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| author | Renato Garcia <fgarcia.renato@gmail.com> | 2023-05-08 03:05:40 -0300 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-05-08 02:05:40 -0400 |
| commit | 9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f (patch) | |
| tree | e0501dabda01ebf42f70122c8350277547e5127e /pkgs/applications/science/misc/snakemake/default.nix | |
| parent | 6c3e79e0adf8845fda55af9686e32121d43b7c72 (diff) | |
| download | nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar.gz nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar.bz2 nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar.lz nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar.xz nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.tar.zst nixpkgs-9d1a27e2fdd970acd629ac0f3b14bcf0ee0a4c7f.zip | |
snakemake: 7.14.2 -> 7.25.3 (#230524)
Diffstat (limited to 'pkgs/applications/science/misc/snakemake/default.nix')
| -rw-r--r-- | pkgs/applications/science/misc/snakemake/default.nix | 15 |
1 files changed, 7 insertions, 8 deletions
diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix index f162e2329a7..f3828176131 100644 --- a/pkgs/applications/science/misc/snakemake/default.nix +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "snakemake"; - version = "7.14.2"; + version = "7.25.3"; format = "setuptools"; src = fetchFromGitHub { owner = "snakemake"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-4XduybmDmlux3zvjbN1ouaJ1PkNO8h6vHuxgZ3YLBrw="; + hash = "sha256-KrstajTocVX5Tw7aiPoJ9vxJ0nKF+jqJcYJKrJvBt0Q="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -21,22 +21,20 @@ python3.pkgs.buildPythonApplication rec { connection-pool datrie docutils - filelock gitpython + humanfriendly jinja2 jsonschema nbformat - networkx psutil pulp - pygraphviz pyyaml - ratelimiter requests - retry + reretry smart-open stopit tabulate + throttler toposort wrapt yte @@ -44,7 +42,7 @@ python3.pkgs.buildPythonApplication rec { # See # https://github.com/snakemake/snakemake/blob/main/.github/workflows/main.yml#L99 - # for the current basic test suite. Tibanna and Tes require extra + # for the current basic test suite. Slurm, Tibanna and Tes require extra # setup. nativeCheckInputs = with python3.pkgs; [ @@ -54,6 +52,7 @@ python3.pkgs.buildPythonApplication rec { ]; disabledTestPaths = [ + "tests/test_slurm.py" "tests/test_tes.py" "tests/test_tibanna.py" "tests/test_linting.py" |