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author | Bruno Bzeznik <Bruno.Bzeznik@imag.fr> | 2020-01-09 18:38:54 +0100 |
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committer | Dmitry Kalinkin <dmitry.kalinkin@gmail.com> | 2020-01-09 12:38:53 -0500 |
commit | f7a4e4a93a2a317fb76b9e09a97ea6246e477da2 (patch) | |
tree | b65c51f30682a6269a3563d4303607629cd499c2 /pkgs/applications/science/biology | |
parent | 7d38d95e76d995c26e60dad7fcd203245fdc9ea6 (diff) | |
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bayescan: init at 2.1 (#68191)
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/bayescan/default.nix | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/bayescan/default.nix b/pkgs/applications/science/biology/bayescan/default.nix new file mode 100644 index 00000000000..4e216fbdbe6 --- /dev/null +++ b/pkgs/applications/science/biology/bayescan/default.nix @@ -0,0 +1,39 @@ +{ stdenv, fetchurl, unzip, llvmPackages }: + +stdenv.mkDerivation rec { + pname = "bayescan"; + version = "2.1"; + + src = fetchurl { + url = "http://cmpg.unibe.ch/software/BayeScan/files/BayeScan${version}.zip"; + sha256 = "0ismima8j8z0zj9yc267rpf7z90w57b2pbqzjnayhc3ab8mcbfy6"; + }; + + nativeBuildInputs = [ unzip ]; + buildInputs = stdenv.lib.optional stdenv.cc.isClang llvmPackages.openmp; + + # Disable FORTIFY_SOURCE or the binary fails with "buffer overflow" + hardeningDisable = [ "fortify" ]; + + sourceRoot = "BayeScan${version}/source"; + + postPatch = '' + substituteInPlace Makefile --replace "-static" "" \ + --replace "g++" "c++" + ''; + + installPhase = '' + mkdir -p $out/bin + mkdir -p $out/share/doc/bayescan + cp bayescan_${version} $out/bin + cp -r ../*pdf ../input_examples ../"R functions" $out/share/doc/bayescan + ''; + + meta = with stdenv.lib; { + description = "Detecting natural selection from population-based genetic data"; + homepage = "http://cmpg.unibe.ch/software/BayeScan"; + license = licenses.gpl3; + maintainers = [ maintainers.bzizou ]; + platforms = stdenv.lib.platforms.all; + }; +} |