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author | mimadrid <mimadrid@ucm.es> | 2016-06-26 13:47:22 +0200 |
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committer | mimadrid <mimadrid@ucm.es> | 2016-06-26 19:27:56 +0200 |
commit | 5c7a75412e2959741d4f66939cae89fc7365058a (patch) | |
tree | cb69f5db507da6446bea777d917c9ed3c3d7e222 /pkgs/applications/science/biology | |
parent | cab28503ad5e6fb516845890a06e4f8693d0ea16 (diff) | |
download | nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar.gz nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar.bz2 nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar.lz nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar.xz nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.tar.zst nixpkgs-5c7a75412e2959741d4f66939cae89fc7365058a.zip |
igv: init at 2.3.77
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/igv/default.nix | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix new file mode 100644 index 00000000000..3d0f7154e0e --- /dev/null +++ b/pkgs/applications/science/biology/igv/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchurl, unzip, jre }: + +stdenv.mkDerivation rec { + name = "igv-${version}"; + version = "2.3.77"; + + src = fetchurl { + url = "http://data.broadinstitute.org/igv/projects/downloads/IGV_${version}.zip"; + sha256 = "9d8c622649f9f02026e92fa44006bb57e897baad4359c8708ca9cdbb71f94bb5"; + }; + + buildInputs = [ unzip jre ]; + + installPhase = '' + mkdir -pv $out/{share,bin} + cp -Rv * $out/share/ + + sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh + sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh + + ln -s $out/share/igv.sh $out/bin/igv + + chmod +x $out/bin/igv + ''; + + meta = with stdenv.lib; { + homepage = "https://www.broadinstitute.org/igv/"; + description = "A visualization tool for interactive exploration of genomic datasets"; + license = licenses.lgpl21; + platforms = platforms.unix; + maintainers = [ maintainers.mimadrid ]; + }; +} |