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author | Justin Bedo <cu@cua0.org> | 2017-03-07 16:16:03 +1100 |
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committer | Robert Helgesson <robert@rycee.net> | 2017-03-08 22:43:45 +0100 |
commit | 4bb50fd08cb63aefbb4b7d38092310048e62dc20 (patch) | |
tree | 7a11d94b37a756d1a52cf25cd83397ed2ba5dc79 /pkgs/applications/science/biology | |
parent | 7f214e64109438fb8a9bbffd94ca41021d8b8fa7 (diff) | |
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picard-tools: init at 2.7.1
Diffstat (limited to 'pkgs/applications/science/biology')
-rw-r--r-- | pkgs/applications/science/biology/picard-tools/default.nix | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix new file mode 100644 index 00000000000..3f17825202e --- /dev/null +++ b/pkgs/applications/science/biology/picard-tools/default.nix @@ -0,0 +1,30 @@ +{stdenv, fetchurl, jre, makeWrapper}: + +stdenv.mkDerivation rec { + name = "picard-tools-${version}"; + version = "2.7.1"; + + src = fetchurl { + url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar"; + sha256 = "0rcfcvy9zacqmh7nyqlm93hzsx6gfygmcf8d2p02h5l69gvygnb9"; + }; + + buildInputs = [ jre makeWrapper ]; + + phases = [ "installPhase" ]; + + installPhase = '' + mkdir -p $out/libexec/picard + cp $src $out/libexec/picard/picard.jar + mkdir -p $out/bin + makeWrapper ${jre}/bin/java $out/bin/picard --add-flags "-jar $out/libexec/picard/picard.jar" + ''; + + meta = with stdenv.lib; { + description = "Tools for high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF."; + license = licenses.mit; + homepage = https://broadinstitute.github.io/picard/; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.all; + }; +} |