mpi: use mpi attribute consistently as the default MPI implementations

Use the attribute mpi to provide a system wide default MPI
implementation. The default is openmpi (as before).
This now allows for overriding the MPI implentation by using
the overlay mechanism. Build all packages with mpich instead
of the default openmpi can now be achived like this:
self: super:
 {
   mpi = super.mpich;
 }

All derivations that have been using "mpi ? null" to provide optional
building with MPI have been change in the following way to allow for
optional builds with MPI:
{ ...
, mpi
, useMpi ? false
}

1 files changed, 5 insertions, 5 deletions

diff --git a/pkgs/applications/science/biology/raxml/default.nix b/pkgs/applications/science/biology/raxml/default.nix
index 4f9b5aca1b2..6e747e318f5 100644
--- a/pkgs/applications/science/biology/raxml/default.nix
+++ b/pkgs/applications/science/biology/raxml/default.nix
@@ -1,7 +1,7 @@
 { lib, stdenv
 , fetchFromGitHub
-, pkgs
-, mpi ? false
+, useMpi ? false
+, mpi
 }:
 
 stdenv.mkDerivation rec {
@@ -15,16 +15,16 @@ stdenv.mkDerivation rec {
     sha256 = "1jqjzhch0rips0vp04prvb8vmc20c5pdmsqn8knadcf91yy859fh";
   };
 
-  buildInputs = lib.optionals mpi [ pkgs.openmpi ];
+  buildInputs = lib.optionals useMpi [ mpi ];
 
   # TODO darwin, AVX and AVX2 makefile targets
-  buildPhase = if mpi then ''
+  buildPhase = if useMpi then ''
       make -f Makefile.MPI.gcc
     '' else ''
       make -f Makefile.SSE3.PTHREADS.gcc
     '';
 
-  installPhase = if mpi then ''
+  installPhase = if useMpi then ''
     mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
   '' else ''
     mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin