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| author | Aaron Andersen <aaron@fosslib.net> | 2019-09-05 12:08:10 -0400 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2019-09-05 12:08:10 -0400 |
| commit | 11de7aa609ae92771bc1a93315b39922fce5f1cb (patch) | |
| tree | a091c01528670341505c86efe1272c1f38768668 | |
| parent | 636d9043eaf8064054b94f9f5b1ec40616fd8003 (diff) | |
| parent | 3f83cbf5385bb904fa65bd82fedf35029ba31831 (diff) | |
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Merge pull request #64322 from jbedo/xenomapper
xenomapper: init 1.0.2
| -rw-r--r-- | pkgs/applications/science/biology/xenomapper/default.nix | 23 | ||||
| -rw-r--r-- | pkgs/top-level/python-packages.nix | 2 |
2 files changed, 25 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/xenomapper/default.nix b/pkgs/applications/science/biology/xenomapper/default.nix new file mode 100644 index 00000000000..cc235c4ca99 --- /dev/null +++ b/pkgs/applications/science/biology/xenomapper/default.nix @@ -0,0 +1,23 @@ +{buildPythonPackage, lib, fetchFromGitHub, statistics}: + +buildPythonPackage rec { + pname = "xenomapper"; + version = "1.0.2"; + + src = fetchFromGitHub { + owner = "genomematt"; + repo = pname; + rev = "v${version}"; + sha256 = "0mnmfzlq5mhih6z8dq5bkx95vb8whjycz9mdlqwbmlqjb3gb3zhr"; + }; + + propagatedBuildInputs = [ statistics ]; + + meta = with lib; { + homepage = "http://github.com/genomematt/xenomapper"; + description = "A utility for post processing mapped reads that have been aligned to a primary genome and a secondary genome and binning reads into species specific, multimapping in each species, unmapped and unassigned bins"; + license = licenses.gpl3; + platforms = platforms.all; + maintainers = [ maintainers.jbedo ]; + }; +} diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index a7c564d422d..5064efa558b 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -6184,6 +6184,8 @@ in { yattag = callPackage ../development/python-modules/yattag { }; + xenomapper = disabledIf (!isPy3k) (callPackage ../applications/science/biology/xenomapper { }); + z3 = (toPythonModule (pkgs.z3.override { inherit python; })).python; |