path: root/pkgs/applications/science/biology/minc-widgets/default.nix

{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper,
  perlPackages,
  libminc, octave, coreutils, minc_tools }:

stdenv.mkDerivation rec {
  pname = "minc-widgets";
  name  = "${pname}-2016-04-20";


  src = fetchFromGitHub {
    owner  = "BIC-MNI";
    repo   = pname;
    rev    = "f08b643894c81a1a2e0fbfe595a17a42ba8906db";
    sha256 = "1b9g6lf37wpp211ikaji4rf74rl9xcmrlyqcw1zq3z12ji9y33bm";
  };

  nativeBuildInputs = [ cmake makeWrapper ];
  buildInputs = [ libminc ];
  propagatedBuildInputs = (with perlPackages; [ perl GetoptTabular MNI-Perllib ]) ++ [ octave coreutils minc_tools ];

  postFixup = ''
    for p in $out/bin/*; do
      wrapProgram $p --prefix PERL5LIB : $PERL5LIB --set PATH "${lib.makeBinPath [ coreutils minc_tools ]}";
    done
  '';

  meta = with lib; {
    homepage = "https://github.com/BIC-MNI/${pname}";
    description = "Collection of Perl and shell scripts for processing MINC files";
    maintainers = with maintainers; [ bcdarwin ];
    platforms = platforms.unix;
    license = licenses.free;
  };
}