pkgs/applications/science/biology/star/default.nix


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39

{ lib, stdenv, fetchFromGitHub, zlib }:

stdenv.mkDerivation rec {
  pname = "star";
  version = "2.7.10b";

  src = fetchFromGitHub {
    repo = "STAR";
    owner = "alexdobin";
    rev = version;
    sha256 = "sha256-58Y4lzqXwBhRlXcionUg2IhAg5znNUuyr/FsuNZd+5Q=";
  };

  sourceRoot = "source/source";

  postPatch = ''
    substituteInPlace Makefile --replace "/bin/rm" "rm"
  '';

  buildInputs = [ zlib ];

  buildFlags = [ "STAR" "STARlong" ];

  enableParallelBuilding = true;

  installPhase = ''
    runHook preInstall
    install -D STAR STARlong -t $out/bin
    runHook postInstall
  '';

  meta = with lib; {
    description = "Spliced Transcripts Alignment to a Reference";
    homepage = "https://github.com/alexdobin/STAR";
    license = licenses.gpl3Plus;
    platforms = [ "x86_64-linux" ];
    maintainers = [ maintainers.arcadio ];
  };
}