blob: efaa4403f41d338018c3887287c47d99113e8021 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
{ lib, stdenv, fetchpatch, fetchFromGitHub, htslib, zlib, bzip2, lzma, ncurses, boost }:
stdenv.mkDerivation rec {
pname = "delly";
version = "0.8.7";
src = fetchFromGitHub {
owner = "dellytools";
repo = pname;
rev = "v${version}";
sha256 = "sha256-DWwC35r8cQbePUzppkFQlev0YZdxk2+BSrNTW/DOY3M=";
};
buildInputs = [ zlib htslib bzip2 lzma ncurses boost ];
EBROOTHTSLIB = htslib;
installPhase = ''
runHook preInstall
install -Dm555 src/delly $out/bin/delly
runHook postInstall
'';
meta = with lib; {
description = "Structural variant caller for mapped DNA sequenced data";
license = licenses.bsd3;
maintainers = with maintainers; [ scalavision ];
platforms = platforms.linux;
longDescription = ''
Delly is an integrated structural variant (SV) prediction method
that can discover, genotype and visualize deletions, tandem duplications,
inversions and translocations at single-nucleotide resolution in
short-read massively parallel sequencing data. It uses paired-ends,
split-reads and read-depth to sensitively and accurately delineate
genomic rearrangements throughout the genome.
'';
};
}
|