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Diffstat (limited to 'pkgs/development/python-modules/ruffus/default.nix')
-rw-r--r-- | pkgs/development/python-modules/ruffus/default.nix | 53 |
1 files changed, 53 insertions, 0 deletions
diff --git a/pkgs/development/python-modules/ruffus/default.nix b/pkgs/development/python-modules/ruffus/default.nix new file mode 100644 index 00000000000..1b3b271fb61 --- /dev/null +++ b/pkgs/development/python-modules/ruffus/default.nix @@ -0,0 +1,53 @@ +{ gevent +, buildPythonPackage +, fetchFromGitHub +, hostname +, pytest +, python +, stdenv +}: + +buildPythonPackage rec { + pname = "ruffus"; + version = "2.8.1"; + + src = fetchFromGitHub { + owner = "cgat-developers"; + repo = "${pname}"; + rev = "v${version}"; + sha256 = "1gyabqafq4s2sy0prh3k1m8859shzjmfxr7fimx10liflvki96a9"; + }; + + propagatedBuildInputs = [ gevent ]; + + postPatch = '' + sed -i -e 's|/bin/bash|${stdenv.shell}|' ruffus/test/Makefile + sed -i -e 's|\tpytest|\t${pytest}/bin/pytest|' ruffus/test/Makefile + sed -i -e 's|\tpython|\t${python.interpreter}|' ruffus/test/Makefile + sed -i -e 's|/usr/bin/env bash|${stdenv.shell}|' ruffus/test/run_all_unit_tests.cmd + sed -i -e 's|python3|${python.interpreter}|' ruffus/test/run_all_unit_tests3.cmd + sed -i -e 's|python %s|${python.interpreter} %s|' ruffus/test/test_drmaa_wrapper_run_job_locally.py + ''; + + makefile = "ruffus/test/Makefile"; + + checkInputs = [ + gevent + hostname + pytest + ]; + + checkPhase = '' + export HOME=$TMPDIR + cd ruffus/test + make all PYTEST_OPTIONS="-q --disable-warnings" + ''; + + meta = with stdenv.lib; { + description = "Light-weight Python Computational Pipeline Management"; + homepage = http://www.ruffus.org.uk; + license = licenses.mit; + maintainers = [ maintainers.kiwi ]; + }; +} + |