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{ stdenv
, buildPythonPackage
, fetchPypi
, cython
, lockfile
, cachecontrol
, decorator
, ipython
, matplotlib
, natsort
, numpy
, pandas
, scipy
, hdmedians
, scikitlearn
, coverage
, python
, isPy3k
}:
buildPythonPackage rec {
version = "0.5.5";
pname = "scikit-bio";
disabled = !isPy3k;
src = fetchPypi {
inherit pname version;
sha256 = "9fa813be66e88a994f7b7a68b8ba2216e205c525caa8585386ebdeebed6428df";
};
buildInputs = [ cython ];
checkInputs = [ coverage ];
propagatedBuildInputs = [ lockfile cachecontrol decorator ipython matplotlib natsort numpy pandas scipy hdmedians scikitlearn ];
# remove on when version > 0.5.4
postPatch = ''
sed -i "s/numpy >= 1.9.2, < 1.14.0/numpy/" setup.py
sed -i "s/pandas >= 0.19.2, < 0.23.0/pandas/" setup.py
'';
# cython package not included for tests
doCheck = false;
checkPhase = ''
${python.interpreter} -m skbio.test
'';
meta = with stdenv.lib; {
homepage = "http://scikit-bio.org/";
description = "Data structures, algorithms and educational resources for bioinformatics";
license = licenses.bsd3;
maintainers = [ maintainers.costrouc ];
};
}
|