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|
{ lib
, stdenv
, fetchurl
, makeWrapper
, jre
, wget
, which
, gnused
, gawk
, coreutils
}:
stdenv.mkDerivation rec {
pname = "nextflow";
version = "21.10.6";
src = fetchurl {
url = "https://github.com/nextflow-io/nextflow/releases/download/v${version}/nextflow-${version}-all";
sha256 = "0l9hi51vrhvfx3px2pxw7lp4h21n8ks50x4icfk3hbgl2hwf7fvx";
};
nativeBuildInputs = [ makeWrapper ];
buildInputs = [ jre wget which gnused gawk coreutils ];
dontUnpack = true;
installPhase = ''
runHook preInstall
mkdir -p $out/bin
install -Dm755 $src $out/bin/nextflow
runHook postInstall
'';
postFixup = ''
wrapProgram $out/bin/nextflow --prefix PATH : ${lib.makeBinPath buildInputs}
'';
meta = with lib; {
description = "A DSL for data-driven computational pipelines";
longDescription = ''
Nextflow is a bioinformatics workflow manager that enables the development of portable and reproducible workflows.
It supports deploying workflows on a variety of execution platforms including local, HPC schedulers, AWS Batch, Google Cloud Life Sciences, and Kubernetes.
Additionally, it provides support for manage your workflow dependencies through built-in support for Conda, Docker, Singularity, and Modules.
'';
homepage = "https://www.nextflow.io/";
changelog = "https://github.com/nextflow-io/nextflow/releases";
license = licenses.asl20;
maintainers = [ maintainers.Etjean ];
mainProgram = "nextflow";
platforms = platforms.unix;
};
}
|