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{ stdenv
, lib
, fetchurl
, unzip
, makeDesktopItem
, jre
}:
let
desktopItem = makeDesktopItem {
name = "jmol";
exec = "jmol";
desktopName = "JMol";
genericName = "Molecular Modeler";
mimeTypes = [
"chemical/x-pdb"
"chemical/x-mdl-molfile"
"chemical/x-mol2"
"chemical/seq-aa-fasta"
"chemical/seq-na-fasta"
"chemical/x-xyz"
"chemical/x-mdl-sdf"
];
categories = [ "Graphics" "Education" "Science" "Chemistry" ];
};
in
stdenv.mkDerivation rec {
version = "14.32.33";
pname = "jmol";
src = let
baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
in fetchurl {
url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
sha256 = "sha256-aImV5zgXjsXdRJLrYIomDymXHRhxuOwGYAwpMIr7wak=";
};
patchPhase = ''
sed -i -e "4s:.*:command=${jre}/bin/java:" -e "10s:.*:jarpath=$out/share/jmol/Jmol.jar:" -e "11,21d" jmol
'';
installPhase = ''
mkdir -p "$out/share/jmol" "$out/bin"
${unzip}/bin/unzip jsmol.zip -d "$out/share/"
cp *.jar jmol.sh "$out/share/jmol"
cp -r ${desktopItem}/share/applications $out/share
cp jmol $out/bin
'';
enableParallelBuilding = true;
meta = with lib; {
description = "A Java 3D viewer for chemical structures";
homepage = "https://sourceforge.net/projects/jmol";
license = licenses.lgpl2;
platforms = platforms.all;
maintainers = with maintainers; [ mounium ] ++ teams.sage.members;
};
}
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