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{stdenv, fetchurl, cpio}:
# The NCBI package only builds on 32bits - on 64bits it breaks because
# of position dependent code. Debian packagers have written replacement
# make files(!). Either we use these, or negotiate a version which can
# be pushed upstream to NCBI.
#
# Another note: you may want the older and deprecated C-libs at ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/Mar_17_2008/NCBI_C_Toolkit/ncbi_c--Mar_17_2008.tar.gz
stdenv.mkDerivation rec {
name = "ncbi_tools";
ncbi_version = "Dec_31_2008";
src = fetchurl {
url = "ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/2008/${ncbi_version}/ncbi_cxx--${ncbi_version}.tar.gz";
sha256 = "1b2v0dcdqn3bysgdkj57sxmd6s0hc9wpnxssviz399g6plhxggbr";
};
configureFlags = [
"--without-debug"
"--with-bin-release"
"--with-dll"
"--without-static"
];
buildInputs = [ cpio ];
meta = {
description = ''NCBI Bioinformatics toolbox (incl. BLAST)'';
longDescription = ''The NCBI Bioinformatics toolsbox, including command-line utilties, libraries and include files. No X11 support'';
homepage = "http://www.ncbi.nlm.nih.gov/IEB/ToolBox/";
license = "GPL";
priority = 5; # zlib.so gives a conflict with zlib
broken = true;
};
}
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