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{ stdenv, fetchurl, hmmer, perl }:
stdenv.mkDerivation rec {
version = "1.1.1";
pname = "itsx";
src = fetchurl {
url = "http://microbiology.se/sw/ITSx_${version}.tar.gz";
sha256 = "0lrmy2n3ax7f208k0k8l3yz0j5cpz05hv4hx1nnxzn0c51z1pc31";
};
buildInputs = [ hmmer perl ];
buildPhase = ''
sed -e "s,profileDB = .*,profileDB = \"$out/share/ITSx_db/HMMs\";," -i ITSx
sed "3 a \$ENV{\'PATH\'}='${hmmer}/bin:'.\"\$ENV{\'PATH\'}\";" -i ITSx
mkdir bin
mv ITSx bin
'';
installPhase = ''
mkdir -p $out/share/doc && cp -a bin $out/
cp *pdf $out/share/doc
cp -r ITSx_db $out/share
'';
meta = with stdenv.lib; {
description = "Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for use in environmental sequencing";
homepage = "https://microbiology.se/software/itsx/";
license = licenses.gpl3;
maintainers = [ maintainers.bzizou ];
platforms = [ "x86_64-linux" "i686-linux" ];
};
}
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