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{ stdenv, fetchFromGitHub, zlib, bzip2, lzma }:
stdenv.mkDerivation rec {
pname = "freebayes";
version = "1.3.1";
src = fetchFromGitHub {
name = "freebayes-${version}-src";
owner = "ekg";
repo = "freebayes";
rev = "v${version}";
sha256 = "035nriknjqq8gvil81vvsmvqwi35v80q8h1cw24vd1gdyn1x7bys";
fetchSubmodules = true;
};
buildInputs = [ zlib bzip2 lzma ];
installPhase = ''
install -vD bin/freebayes bin/bamleftalign scripts/* -t $out/bin
'';
meta = with stdenv.lib; {
description = "Bayesian haplotype-based polymorphism discovery and genotyping";
license = licenses.mit;
homepage = "https://github.com/ekg/freebayes";
maintainers = with maintainers; [ jdagilliland ];
platforms = [ "x86_64-linux" ];
};
}
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