{ stdenv, fetchPypi, isPy27, python, buildPythonPackage , numpy, hdf5, cython, six, pkgconfig, unittest2, fetchpatch , mpi4py ? null, openssh }: assert hdf5.mpiSupport -> mpi4py != null && hdf5.mpi == mpi4py.mpi; with stdenv.lib; let mpi = hdf5.mpi; mpiSupport = hdf5.mpiSupport; in buildPythonPackage rec { version = "2.9.0"; pname = "h5py"; src = fetchPypi { inherit pname version; sha256 = "9d41ca62daf36d6b6515ab8765e4c8c4388ee18e2a665701fef2b41563821002"; }; patches = [ ( fetchpatch { # Skip a test that probes an already fixed bug in HDF5 (upstream patch) url = "https://github.com/h5py/h5py/commit/141eafa531c6c09a06efe6a694251a1eea84908d.patch"; sha256 = "0lmdn0gznr7gadx7qkxybl945fvwk6r0cc4lg3ylpf8ril1975h8"; })]; configure_flags = "--hdf5=${hdf5}" + optionalString mpiSupport " --mpi"; postConfigure = '' ${python.executable} setup.py configure ${configure_flags} # Needed to run the tests reliably. See: # https://bitbucket.org/mpi4py/mpi4py/issues/87/multiple-test-errors-with-openmpi-30 ${optionalString mpiSupport "export OMPI_MCA_rmaps_base_oversubscribe=yes"} ''; preBuild = if mpiSupport then "export CC=${mpi}/bin/mpicc" else ""; checkInputs = optional isPy27 unittest2 ++ [ openssh ]; nativeBuildInputs = [ pkgconfig ]; buildInputs = [ hdf5 cython ] ++ optional mpiSupport mpi; propagatedBuildInputs = [ numpy six] ++ optionals mpiSupport [ mpi4py openssh ]; meta = { description = "Pythonic interface to the HDF5 binary data format"; homepage = http://www.h5py.org/; license = stdenv.lib.licenses.bsd2; }; }