{ stdenv , fetchFromGitHub , fetchpatch }: # This file is responsible for fetching the sage source and adding necessary patches. # It does not actually build anything, it just copies the patched sources to $out. # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. stdenv.mkDerivation rec { version = "10.0"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; sha256 = "sha256-zN/Lo/GBCjYGemuaYpgG3laufN8te3wPjXMQ+Me9zgY="; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ # Parallelize docubuild using subprocesses, fixing an isolation issue. See # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch # After updating smypow to (https://github.com/sagemath/sage/issues/3360) # we can now set the cache dir to be within the .sage directory. This is # not strictly necessary, but keeps us from littering in the user's HOME. ./patches/sympow-cache.patch ]; # Since sage unfortunately does not release bugfix releases, packagers must # fix those bugs themselves. This is for critical bugfixes, where "critical" # == "causes (transient) doctest failures / somebody complained". bugfixPatches = [ # Sage uses mixed integer programs (MIPs) to find edge disjoint # spanning trees. For some reason, aarch64 glpk takes much longer # than x86_64 glpk to solve such MIPs. Since the MIP formulation # has "numerous problems" and will be replaced by a polynomial # algorithm soon, disable this test for now. # https://github.com/sagemath/sage/issues/34575 ./patches/disable-slow-glpk-test.patch ]; # Patches needed because of package updates. We could just pin the versions of # dependencies, but that would lead to rebuilds, confusion and the burdons of # maintaining multiple versions of dependencies. Instead we try to make sage # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. packageUpgradePatches = [ # https://github.com/sagemath/sage/pull/35584, positively reviewed (fetchpatch { name = "networkx-3.1-upgrade.patch"; url = "https://github.com/sagemath/sage/compare/10.0.rc2..e599562cf5fdfb9799a5412fac40c2f8e9f97341.diff"; sha256 = "sha256-3A90kXqNR0c7+k8xrZXAt5wqWg/VFAPNhQujwTdOyhI="; }) # https://github.com/sagemath/sage/pull/35612, positively reviewed (fetchpatch { name = "linbox-1.7-upgrade.patch"; url = "https://github.com/sagemath/sage/compare/10.0.rc2..9c8796c7b677e3a056348e3510331ea8b8c3c42e.diff"; sha256 = "sha256-/TpvIQZUqmbUuz6wvp3ni9oRir5LBA2FKDJcmnHI1r4="; }) # https://github.com/sagemath/sage/pull/35619 (fetchpatch { name = "maxima-5.46.0-upgrade.patch"; url = "https://github.com/sagemath/sage/compare/10.0.rc3..7e86af5dae8f89868b25a6f57189bb5ca618da89.diff"; sha256 = "sha256-pxSxdJ2lyHoMUIxhlIn1nTHaddRxGvvTj9IbwFCTBFU="; }) # https://github.com/sagemath/sage/pull/35635, positively reviewed (fetchpatch { name = "sympy-1.12-upgrade.patch"; url = "https://github.com/sagemath/sage/compare/10.0.rc2..aa4193cdc8ec9fb7bd7c49696b7f914668f7913a.diff"; sha256 = "sha256-UAmYCxHvnE5p+H2DySNZTPFVm915jHtOEoG+tZz5n7I="; }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; # do not create .orig backup files if patch applies with fuzz patchFlags = [ "--no-backup-if-mismatch" "-p1" ]; postPatch = '' # Make sure sage can at least be imported without setting any environment # variables. It won't be close to feature complete though. sed -i \ "s|var(\"SAGE_ROOT\".*|var(\"SAGE_ROOT\", \"$out\")|" \ src/sage/env.py ''; buildPhase = "# do nothing"; installPhase = '' cp -r . "$out" ''; }