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* gmsh: 4.5.2 -> 4.5.4R. RyanTM2020-03-05
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* Merge pull request #80759 from Thra11/fix-rTimo Kaufmann2020-02-23
|\ | | | | Fix R
| * R: fix build on aarch64 by removing a failing testTom Hall2020-02-22
| | | | | | | | | | | | I believe this test is currently incorrect on aarch64 and expects a warning about loss of precision with much smaller numbers than the platform's long doubles can handle.
| * R: Enable java support on all platformsTom Hall2020-02-19
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* | geogebra: 5-0-570-0 -> 5-0-573-0Maximilian Bosch2020-02-20
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* clp: 1.17.3 -> 1.17.5R. RyanTM2020-02-10
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* Merge master into staging-nextFrederik Rietdijk2020-02-09
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| * gmsh: 4.5.1 -> 4.5.2R. RyanTM2020-02-08
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* | pspp: 1.0.1 -> 1.2.0, fix build w/glibc-2.30Maximilian Bosch2020-01-30
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* Merge master into staging-nextFrederik Rietdijk2020-01-28
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| * qalculate-gtk: 3.6.0 -> 3.7.0Gabriel Ebner2020-01-26
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* | treewide: Fix unsafe concatenation of $LD_LIBRARY_PATHAnders Kaseorg2020-01-15
| | | | | | | | | | | | | | | | | | | | Naive concatenation of $LD_LIBRARY_PATH can result in an empty colon-delimited segment; this tells glibc to load libraries from the current directory, which is definitely wrong, and may be a security vulnerability if the current directory is untrusted. (See #67234, for example.) Fix this throughout the tree. Signed-off-by: Anders Kaseorg <andersk@mit.edu>
* | Merge staging-next into stagingFrederik Rietdijk2020-01-15
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| * nota: init at 1.0Will Dietz2020-01-14
| | | | | | | | Fixes #77590.
* | pcalc: build with bison3Luka Blaskovic2020-01-13
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* Merge pull request #77083 from r-ryantm/auto-update/gmshmarkuskowa2020-01-09
|\ | | | | gmsh: 4.4.1 -> 4.5.1
| * gmsh: 4.4.1 -> 4.5.1R. RyanTM2020-01-06
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* | geogebra: 5-0-569-0 -> 5-0-570-0Maximilian Bosch2020-01-07
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* polymake: fix for structured attrsRobin Gloster2019-12-31
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* treewide: NIX_*_COMPILE -> stringRobin Gloster2019-12-31
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* treewide: replace make/build/configure/patchFlags with nix listsMerijn Broeren2019-12-30
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* python.pkgs.sympy: 1.4 -> 1.5Timo Kaufmann2019-12-26
| | | | | Sage needs some doctest changes. The patch was included upstream. Modelled after https://trac.sagemath.org/ticket/28911.
* R: 3.6.1 -> 3.6.2Alex Branham2019-12-16
| | | | Closes https://github.com/NixOS/nixpkgs/pull/75587.
* pybrial: 1.2.3 -> 1.2.5, directly use the brial srcTimo Kaufmann2019-12-13
| | | | | | | | The pybrial package is a bit awkward. It doesn't have its own top-level attribute, since it has a cyclic dependency with sage. That's one of the reasons why it rarely gets updated. Its distributed along with brial, so its best to keep the versions synchronized. The easiest way to do this is to just re-use the source of brial.
* Merge branch 'auto-update/libqalculate'Gabriel Ebner2019-12-10
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| * qalculate-gtk: 3.5.0 -> 3.6.0Gabriel Ebner2019-12-10
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* | geogebra: 5-0-560-0 -> 5-0-569-0Maximilian Bosch2019-12-08
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* | giac-with-xcas: fix buildJonathan Ringer2019-12-07
|/ | | | remove libGLU_combined package and replace with libGL and libGLU
* Merge pull request #74945 from timokau/sage-no-timeoutTimo Kaufmann2019-12-04
|\ | | | | sage: disable test timeout
| * sage: disable test timeoutTimo Kaufmann2019-12-01
| | | | | | | | | | | | | | | | | | | | | | I already did that once in 359bf7f1e31ff5615974266e55993aff0a52ddf0. That change mysteriously got lost somehow (presumably in some merge commit). Nix has its own timeout settings, so there is no risk in running forever. At the same time, some tests can exceed the default timeout (30minutes per file for --long tests) when run on many weak cores (like the aarch64 community builder or some hydra builders).
* | dconf: move to top-levelJan Tojnar2019-12-01
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* | Merge staging-next into stagingFrederik Rietdijk2019-11-19
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| * Treewide: fix URL permanent redirectsc0bw3b2019-11-16
| | | | | | | | | | Permanent redirects on homepages and/or source URLs as reported by Repology
* | treewide: Get rid of libGLU_combinedadisbladis2019-11-18
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* mathematica: fix version issue with zlib (#73425)Guanpeng Xu2019-11-14
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* Merge pull request #72954 from nkpart/nkpart/R-darwin-enable-tcltkMatthew Bauer2019-11-07
|\ | | | | R: enable tcltk on darwin
| * R: enable tcltk on darwinNick Partridge2019-11-06
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* | sage: backport fix for threejs r109Timo Kaufmann2019-11-06
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* | sage: fix pkgconfig errors in testsTimo Kaufmann2019-11-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | python.pkgs.pkgconfig raises an exception on missing packages since version 1.5.0. Previously those errors were just silently ignored. That worked fine, since the packages are only missing at runtime (when they are not really needed) but present at buildtime. Since this fails the tests now, we just add the packages to PKG_CONFIG_PATH at runtime. This does not add additional runtime dependencies. Still, it would be nicer if the sage testssuite would not test the buildsystem at runtime in the first place. The breakage was originally caused by the pkgconfig update in 1efa71616fadd5c7f852173445b2db824534b99b.
* | sage: ignore werkzeug immutable dict deprecationTimo Kaufmann2019-11-06
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* | sage: ignore deprecation warnings in rst2swsTimo Kaufmann2019-11-06
| | | | | | | | | | | | Needs to be fixed upstream (by werkzeug, twisted). Doesn't impact the functionality and the tests are soon to be removed with the py3 update anyway.
* | sage: ignore cmp deprecation in sagenbTimo Kaufmann2019-11-06
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* yacas: 1.6.1 -> 1.8.0R. RyanTM2019-11-04
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* qalculate-gtk: 3.4.0 -> 3.5.0Gabriel Ebner2019-11-02
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* Merge pull request #72328 from timokau/sage-ignore-cmp-deprecationTimo Kaufmann2019-10-30
|\ | | | | sage: ignore attrs deprecation warning
| * sage: ignore attrs deprecation warningTimo Kaufmann2019-10-30
| | | | | | | | | | | | | | | | | | cmp is deprecated since attrs 19.2.0: http://www.attrs.org/en/19.2.0/changelog.html The deprecation warning breaks the doctests. Fortunately they have a rather long deprecation window, so we can just wait until upstream(s) fix this.
* | R: Add static argument.Niklas Hambüchen2019-10-30
|/ | | | R's autoconf does not use the normal configure flags for that.
* nauty: 26r11 -> 26r12R. RyanTM2019-10-22
| | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/nauty/versions
* ginac: 1.7.7 -> 1.7.8R. RyanTM2019-10-21
| | | | | | | Semi-automatic update generated by https://github.com/ryantm/nixpkgs-update tools. This update was made based on information from https://repology.org/metapackage/ginac/versions
* Merge pull request #69488 from r-ryantm/auto-update/clpRenaud2019-10-12
|\ | | | | clp: 1.17.2 -> 1.17.3
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