diff options
Diffstat (limited to 'pkgs/development')
631 files changed, 7749 insertions, 5645 deletions
diff --git a/pkgs/development/compilers/dmd/binary.nix b/pkgs/development/compilers/dmd/binary.nix index f47e447334b..fdea39db94b 100644 --- a/pkgs/development/compilers/dmd/binary.nix +++ b/pkgs/development/compilers/dmd/binary.nix @@ -18,8 +18,9 @@ in stdenv.mkDerivation { dontConfigure = true; dontBuild = true; - nativeBuildInputs = [ autoPatchelfHook ] - ++ lib.optional hostPlatform.isDarwin fixDarwinDylibNames; + nativeBuildInputs = lib.optionals hostPlatform.isLinux [ + autoPatchelfHook + ] ++ lib.optional hostPlatform.isDarwin fixDarwinDylibNames; propagatedBuildInputs = [ curl tzdata ] ++ lib.optional hostPlatform.isLinux glibc; installPhase = '' diff --git a/pkgs/development/compilers/go/1.16.nix b/pkgs/development/compilers/go/1.16.nix index add1e70bbe3..ffda9f49835 100644 --- a/pkgs/development/compilers/go/1.16.nix +++ b/pkgs/development/compilers/go/1.16.nix @@ -7,7 +7,6 @@ , perl , which , pkg-config -, patch , procps , pcre , cacert @@ -63,7 +62,7 @@ stdenv.mkDerivation rec { }; # perl is used for testing go vet - nativeBuildInputs = [ perl which pkg-config patch procps ]; + nativeBuildInputs = [ perl which pkg-config procps ]; buildInputs = [ cacert pcre ] ++ lib.optionals stdenv.isLinux [ stdenv.cc.libc.out ] ++ lib.optionals (stdenv.hostPlatform.libc == "glibc") [ stdenv.cc.libc.static ]; diff --git a/pkgs/development/compilers/go/1.17.nix b/pkgs/development/compilers/go/1.17.nix index 28d5ffdc6df..d9180e9001d 100644 --- a/pkgs/development/compilers/go/1.17.nix +++ b/pkgs/development/compilers/go/1.17.nix @@ -7,7 +7,6 @@ , perl , which , pkg-config -, patch , procps , pcre , cacert @@ -55,15 +54,15 @@ in stdenv.mkDerivation rec { pname = "go"; - version = "1.17.8"; + version = "1.17.9"; src = fetchurl { url = "https://dl.google.com/go/go${version}.src.tar.gz"; - sha256 = "sha256-Lv/NiYFA2nmgYfN4TKT42LE9gR+yq+na0kBEQtq733o="; + sha256 = "sha256-djrUuvuAqSBEWMX6K45zJ/qXGu5FQlLA42LBEjYVaBM="; }; # perl is used for testing go vet - nativeBuildInputs = [ perl which pkg-config patch procps ]; + nativeBuildInputs = [ perl which pkg-config procps ]; buildInputs = [ cacert pcre ] ++ lib.optionals stdenv.isLinux [ stdenv.cc.libc.out ] ++ lib.optionals (stdenv.hostPlatform.libc == "glibc") [ stdenv.cc.libc.static ]; diff --git a/pkgs/development/compilers/go/1.18.nix b/pkgs/development/compilers/go/1.18.nix index 94e5ac3eccf..5693fa74551 100644 --- a/pkgs/development/compilers/go/1.18.nix +++ b/pkgs/development/compilers/go/1.18.nix @@ -7,7 +7,6 @@ , perl , which , pkg-config -, patch , procps , pcre , cacert @@ -63,7 +62,7 @@ stdenv.mkDerivation rec { }; # perl is used for testing go vet - nativeBuildInputs = [ perl which pkg-config patch procps ]; + nativeBuildInputs = [ perl which pkg-config procps ]; buildInputs = [ cacert pcre ] ++ lib.optionals stdenv.isLinux [ stdenv.cc.libc.out ] ++ lib.optionals (stdenv.hostPlatform.libc == "glibc") [ stdenv.cc.libc.static ]; diff --git a/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix b/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix index 77f0fa9b7dc..eac94b7ec1e 100644 --- a/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix +++ b/pkgs/development/compilers/graalvm/community-edition/mkGraal.nix @@ -29,8 +29,8 @@ # See `update.nix` file for a description on how this file works , sourcesPath ? ./. + "/graalvm${javaVersion}-ce-sources.json" # Use musl instead of glibc to allow true static builds in GraalVM's - # Native Image (i.e.: `--static --libc=musl`). This will cause glibc builds - # to fail, so it should be used with care + # Native Image (i.e.: `--static --libc=musl`). This will cause glibc static + # builds to fail, so it should be used with care , useMusl ? false }: @@ -85,7 +85,7 @@ let ] ++ lib.optionals useMusl [ (lib.getDev musl) # GraalVM 21.3.0+ expects musl-gcc as <system>-musl-gcc - (writeShellScriptBin "${stdenv.system}-musl-gcc" ''${lib.getDev musl}/bin/musl-gcc "$@"'') + (writeShellScriptBin "${stdenv.hostPlatform.system}-musl-gcc" ''${lib.getDev musl}/bin/musl-gcc "$@"'') ]); withNativeImageSvm = builtins.elem "native-image-installable-svm" platform.products; @@ -169,8 +169,6 @@ let outputs = [ "out" "lib" ]; installPhase = '' - # ensure that $lib/lib exists to avoid breaking builds - mkdir -p $lib/lib # jni.h expects jni_md.h to be in the header search path. ln -s $out/include/linux/*_md.h $out/include/ @@ -181,25 +179,26 @@ let if [ -z "\''${JAVA_HOME-}" ]; then export JAVA_HOME=$out; fi EOF ${ - lib.optionalString (stdenv.isLinux) '' - # provide libraries needed for static compilation - ${ - if useMusl then - "for f in ${musl.stdenv.cc.cc}/lib/* ${musl}/lib/* ${zlib.static}/lib/*; do" - else - "for f in ${glibc}/lib/* ${glibc.static}/lib/* ${zlib.static}/lib/*; do" - } - ln -s $f $out/lib/svm/clibraries/${platform.arch}/$(basename $f) - done - - # add those libraries to $lib output too, so we can use them with - # `native-image -H:CLibraryPath=''${lib.getLib graalvmXX-ce}/lib ...` and reduce - # closure size by not depending on GraalVM $out (that is much bigger) - mkdir -p $lib/lib - for f in ${glibc}/lib/*; do - ln -s $f $lib/lib/$(basename $f) - done - '' + lib.optionalString (stdenv.isLinux) '' + # provide libraries needed for static compilation + ${ + if useMusl then + ''for f in "${musl.stdenv.cc.cc}/lib/"* "${musl}/lib/"* "${zlib.static}/lib/"*; do'' + else + ''for f in "${glibc}/lib/"* "${glibc.static}/lib/"* "${zlib.static}/lib/"*; do'' + } + ln -s "$f" "$out/lib/svm/clibraries/${platform.arch}/$(basename $f)" + done + + # add those libraries to $lib output too, so we can use them with + # `native-image -H:CLibraryPath=''${lib.getLib graalvmXX-ce}/lib ...` and reduce + # closure size by not depending on GraalVM $out (that is much bigger) + # we always use glibc here, since musl is only supported for static compilation + mkdir -p "$lib/lib" + for f in "${glibc}/lib/"*; do + ln -s "$f" "$lib/lib/$(basename $f)" + done + '' } ''; @@ -210,17 +209,11 @@ let autoPatchelfIgnoreMissingDeps = withRubySvm && stdenv.isDarwin; preFixup = lib.optionalString (stdenv.isLinux) '' - # We cannot use -exec since wrapProgram is a function but not a - # command. - # - # jspawnhelper is executed from JVM, so it doesn't need to wrap it, - # and it breaks building OpenJDK (#114495). - for bin in $( find "$out" -executable -type f -not -path '*/languages/ruby/lib/gems/*' -not -name jspawnhelper ); do - if patchelf --print-interpreter "$bin" &> /dev/null || head -n 1 "$bin" | grep '^#!' -q; then - wrapProgram "$bin" \ - --prefix LD_LIBRARY_PATH : "${runtimeLibraryPath}" \ - --prefix PATH : "${runtimeDependencies}" - fi + # Find all executables in any directory that contains '/bin/' + for bin in $(find "$out" -executable -type f -wholename '*/bin/*'); do + wrapProgram "$bin" \ + --prefix LD_LIBRARY_PATH : "${runtimeLibraryPath}" \ + --prefix PATH : "${runtimeDependencies}" done find "$out" -name libfontmanager.so -exec \ diff --git a/pkgs/development/compilers/inklecate/default.nix b/pkgs/development/compilers/inklecate/default.nix index 32b91f5ddfe..ecf5ed50ab3 100644 --- a/pkgs/development/compilers/inklecate/default.nix +++ b/pkgs/development/compilers/inklecate/default.nix @@ -17,7 +17,7 @@ buildDotnetModule rec { sha256 = "00lagmwsbxap5mgnw4gndpavmv3xsgincdaq1zvw7fkc3vn3pxqc"; }; - nativeBuildInputs = [ autoPatchelfHook ]; + nativeBuildInputs = lib.optionals stdenv.isLinux [ autoPatchelfHook ]; buildInputs = [ stdenv.cc.cc.lib ]; projectFile = "inklecate/inklecate.csproj"; diff --git a/pkgs/development/compilers/ldc/binary.nix b/pkgs/development/compilers/ldc/binary.nix index 05928d396c8..dd4d51c81e3 100644 --- a/pkgs/development/compilers/ldc/binary.nix +++ b/pkgs/development/compilers/ldc/binary.nix @@ -18,8 +18,9 @@ in stdenv.mkDerivation { dontConfigure = true; dontBuild = true; - nativeBuildInputs = [ autoPatchelfHook ] - ++ lib.optional hostPlatform.isDarwin fixDarwinDylibNames; + nativeBuildInputs = lib.optionals hostPlatform.isLinux [ + autoPatchelfHook + ] ++ lib.optional hostPlatform.isDarwin fixDarwinDylibNames; buildInputs = lib.optionals stdenv.hostPlatform.isLinux [ libxml2 stdenv.cc.cc ]; diff --git a/pkgs/development/compilers/llvm/10/llvm/default.nix b/pkgs/development/compilers/llvm/10/llvm/default.nix index bb1b90b36a9..128ac570935 100644 --- a/pkgs/development/compilers/llvm/10/llvm/default.nix +++ b/pkgs/development/compilers/llvm/10/llvm/default.nix @@ -244,6 +244,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/11/llvm/default.nix b/pkgs/development/compilers/llvm/11/llvm/default.nix index e8cfd23faa7..955f9dbec7e 100644 --- a/pkgs/development/compilers/llvm/11/llvm/default.nix +++ b/pkgs/development/compilers/llvm/11/llvm/default.nix @@ -255,6 +255,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/12/llvm/default.nix b/pkgs/development/compilers/llvm/12/llvm/default.nix index 2c035ee67a9..8acd4d2c1fd 100644 --- a/pkgs/development/compilers/llvm/12/llvm/default.nix +++ b/pkgs/development/compilers/llvm/12/llvm/default.nix @@ -242,6 +242,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/13/llvm/default.nix b/pkgs/development/compilers/llvm/13/llvm/default.nix index abfb2b36d18..b760d75cf4e 100644 --- a/pkgs/development/compilers/llvm/13/llvm/default.nix +++ b/pkgs/development/compilers/llvm/13/llvm/default.nix @@ -205,6 +205,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/14/llvm/default.nix b/pkgs/development/compilers/llvm/14/llvm/default.nix index 05aac728b45..ea147337831 100644 --- a/pkgs/development/compilers/llvm/14/llvm/default.nix +++ b/pkgs/development/compilers/llvm/14/llvm/default.nix @@ -200,6 +200,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/5/llvm/default.nix b/pkgs/development/compilers/llvm/5/llvm/default.nix index cf668cd566a..253aaade693 100644 --- a/pkgs/development/compilers/llvm/5/llvm/default.nix +++ b/pkgs/development/compilers/llvm/5/llvm/default.nix @@ -222,6 +222,12 @@ stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${v}.dylib '') versionSuffixes} '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/6/llvm/default.nix b/pkgs/development/compilers/llvm/6/llvm/default.nix index 61f9234274d..622b90e58e8 100644 --- a/pkgs/development/compilers/llvm/6/llvm/default.nix +++ b/pkgs/development/compilers/llvm/6/llvm/default.nix @@ -215,6 +215,12 @@ stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${v}.dylib '') versionSuffixes} '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/7/llvm/default.nix b/pkgs/development/compilers/llvm/7/llvm/default.nix index b324e1a0e4d..01784baca8c 100644 --- a/pkgs/development/compilers/llvm/7/llvm/default.nix +++ b/pkgs/development/compilers/llvm/7/llvm/default.nix @@ -234,6 +234,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${v}.dylib '') versionSuffixes} '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/8/llvm/default.nix b/pkgs/development/compilers/llvm/8/llvm/default.nix index efd1707eb33..01a052d4042 100644 --- a/pkgs/development/compilers/llvm/8/llvm/default.nix +++ b/pkgs/development/compilers/llvm/8/llvm/default.nix @@ -226,6 +226,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/9/llvm/default.nix b/pkgs/development/compilers/llvm/9/llvm/default.nix index 1dd1455ed6d..b197e9ab8ba 100644 --- a/pkgs/development/compilers/llvm/9/llvm/default.nix +++ b/pkgs/development/compilers/llvm/9/llvm/default.nix @@ -241,6 +241,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/llvm/git/llvm/default.nix b/pkgs/development/compilers/llvm/git/llvm/default.nix index d2059cc66ba..02ec0f3ab11 100644 --- a/pkgs/development/compilers/llvm/git/llvm/default.nix +++ b/pkgs/development/compilers/llvm/git/llvm/default.nix @@ -200,6 +200,12 @@ in stdenv.mkDerivation (rec { ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${shortVersion}.dylib ln -s $lib/lib/libLLVM.dylib $lib/lib/libLLVM-${release_version}.dylib '' + + optionalString enableSharedLibraries '' + mkdir -p $dev/lib + mv $lib/lib/*.a $dev/lib + sed -i -E "s|$lib/lib/(.*)\.a|$dev/lib/\1\.a|" \ + "$dev/lib/cmake/llvm/LLVMExports-${if debugVersion then "debug" else "release"}.cmake" + '' + optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' cp NATIVE/bin/llvm-config $dev/bin/llvm-config-native ''; diff --git a/pkgs/development/compilers/mrustc/default.nix b/pkgs/development/compilers/mrustc/default.nix index 4c813d88b76..2172c61099f 100644 --- a/pkgs/development/compilers/mrustc/default.nix +++ b/pkgs/development/compilers/mrustc/default.nix @@ -25,6 +25,7 @@ stdenv.mkDerivation rec { sed -i 's/\$(shell git show --pretty=%H -s)/${rev}/' Makefile sed -i 's/\$(shell git symbolic-ref -q --short HEAD || git describe --tags --exact-match)/${tag}/' Makefile sed -i 's/\$(shell git diff-index --quiet HEAD; echo $$?)/0/' Makefile + sed '1i#include <limits>' -i src/trans/codegen_c.cpp ''; strictDeps = true; diff --git a/pkgs/development/compilers/open-watcom/v2.nix b/pkgs/development/compilers/open-watcom/v2.nix index dc2af6e7835..79973f761c5 100644 --- a/pkgs/development/compilers/open-watcom/v2.nix +++ b/pkgs/development/compilers/open-watcom/v2.nix @@ -12,14 +12,14 @@ stdenv.mkDerivation rec { pname = "open-watcom-v2"; - version = "unstable-2022-03-14"; + version = "unstable-2022-04-18"; name = "${pname}-unwrapped-${version}"; src = fetchFromGitHub { owner = "open-watcom"; repo = "open-watcom-v2"; - rev = "22627ccc1bd3de70aff9ac056e0dc9ecf7f7b6ec"; - sha256 = "khy/fhmQjTGKfx6iOUBt+ySwpEx0df/7meyNvBnJAPY="; + rev = "3e762ff7342f9d82b7d8df54db9558158332ac02"; + sha256 = "KMFvLIUqor2wxeO03Uh/jycvnCTOd1ySxYTq4PJ0tHk="; }; postPatch = '' diff --git a/pkgs/development/compilers/rust/1_59.nix b/pkgs/development/compilers/rust/1_59.nix deleted file mode 100644 index 98125851655..00000000000 --- a/pkgs/development/compilers/rust/1_59.nix +++ /dev/null @@ -1,64 +0,0 @@ -# New rust versions should first go to staging. -# Things to check after updating: -# 1. Rustc should produce rust binaries on x86_64-linux, aarch64-linux and x86_64-darwin: -# i.e. nix-shell -p fd or @GrahamcOfBorg build fd on github -# This testing can be also done by other volunteers as part of the pull -# request review, in case platforms cannot be covered. -# 2. The LLVM version used for building should match with rust upstream. -# Check the version number in the src/llvm-project git submodule in: -# https://github.com/rust-lang/rust/blob/<version-tag>/.gitmodules -# 3. Firefox and Thunderbird should still build on x86_64-linux. - -{ stdenv, lib -, buildPackages -, newScope, callPackage -, CoreFoundation, Security, SystemConfiguration -, pkgsBuildTarget, pkgsBuildBuild, pkgsBuildHost -, makeRustPlatform -, llvmPackages_11 -, llvmPackages_13, llvm_13 -} @ args: - -import ./default.nix { - rustcVersion = "1.59.0"; - rustcSha256 = "sha256-p8juruhb/O+EyWsCsxcdHmVA0VF5/4Pd3Z6vuhhfhfk="; - - llvmSharedForBuild = pkgsBuildBuild.llvmPackages_13.libllvm.override { enableSharedLibraries = true; }; - llvmSharedForHost = pkgsBuildHost.llvmPackages_13.libllvm.override { enableSharedLibraries = true; }; - llvmSharedForTarget = pkgsBuildTarget.llvmPackages_13.libllvm.override { enableSharedLibraries = true; }; - - llvmBootstrapForDarwin = llvmPackages_11; - - # For use at runtime - llvmShared = llvm_13.override { enableSharedLibraries = true; }; - - # Expose llvmPackages used for rustc from rustc via passthru for LTO in Firefox - llvmPackagesForBuild = pkgsBuildBuild.llvmPackages_13; - - # Note: the version MUST be one version prior to the version we're - # building - bootstrapVersion = "1.58.1"; - - # fetch hashes by running `print-hashes.sh ${bootstrapVersion}` - bootstrapHashes = { - i686-unknown-linux-gnu = "c3d282cd96cc9e5292e62db1ebb9fa6d5b738f4684d5ece9883f7472e2f76ad4"; - x86_64-unknown-linux-gnu = "4fac6df9ea49447682c333e57945bebf4f9f45ec7b08849e507a64b2ccd5f8fb"; - x86_64-unknown-linux-musl = "7036e34eadc8ce22d16b0625919d9f2244ca49a5441d6599f4822116c181d272"; - arm-unknown-linux-gnueabihf = "739389d46c5862b0e67d01dece99aa3db2229e055a3d7f7624679c55b6c33e06"; - armv7-unknown-linux-gnueabihf = "6cede2c7795e8126b0f17b1032d52500e594bac64c7d190bdc0ac1c832ef30bd"; - aarch64-unknown-linux-gnu = "ce557516593e4526709b0f33c2e1d7c932b3ddf76af94c2417d8d667921ce90c"; - aarch64-unknown-linux-musl = "b1533fdeeda483a3633617fd18a79d8fad7821331614b8dc13efd8b22acc30f5"; - x86_64-apple-darwin = "d0044680fc132a721481b130a0a4282a444867f423efdb890fe13e447966412f"; - aarch64-apple-darwin = "00b44985bc87e53c53d92622fb10226f09e9f25c79db48a77c0a769a36f83b1e"; - powerpc64le-unknown-linux-gnu = "b15baef702cbd6f0ea2bef7bf98ca7ce5644f2beb219028e8a12e7053da4c849"; - riscv64gc-unknown-linux-gnu = "d8ea2b11a4b24d1169fa3190127488b951b8bdef28293a4129ddd46c0ba9469b"; - mips64el-unknown-linux-gnuabi64 = "4f03bc972ae784d4f66cfa77215b369723531e67f647de9f49ce9fc21e5691af"; - }; - - selectRustPackage = pkgs: pkgs.rust_1_59; - - rustcPatches = [ - ]; -} - -(builtins.removeAttrs args [ "fetchpatch" "pkgsBuildHost" "llvmPackages_11" "llvmPackages_13" "llvm_13"]) diff --git a/pkgs/development/compilers/rust/1_60.nix b/pkgs/development/compilers/rust/1_60.nix new file mode 100644 index 00000000000..0153b5d23a9 --- /dev/null +++ b/pkgs/development/compilers/rust/1_60.nix @@ -0,0 +1,64 @@ +# New rust versions should first go to staging. +# Things to check after updating: +# 1. Rustc should produce rust binaries on x86_64-linux, aarch64-linux and x86_64-darwin: +# i.e. nix-shell -p fd or @GrahamcOfBorg build fd on github +# This testing can be also done by other volunteers as part of the pull +# request review, in case platforms cannot be covered. +# 2. The LLVM version used for building should match with rust upstream. +# Check the version number in the src/llvm-project git submodule in: +# https://github.com/rust-lang/rust/blob/<version-tag>/.gitmodules +# 3. Firefox and Thunderbird should still build on x86_64-linux. + +{ stdenv, lib +, buildPackages +, newScope, callPackage +, CoreFoundation, Security, SystemConfiguration +, pkgsBuildTarget, pkgsBuildBuild, pkgsBuildHost +, makeRustPlatform +, llvmPackages_11 +, llvmPackages_14, llvm_14 +} @ args: + +import ./default.nix { + rustcVersion = "1.60.0"; + rustcSha256 = "1drqr0a26x1rb2w3kj0i6abhgbs3jx5qqkrcwbwdlx7n3inq5ji0"; + + llvmSharedForBuild = pkgsBuildBuild.llvmPackages_14.libllvm.override { enableSharedLibraries = true; }; + llvmSharedForHost = pkgsBuildHost.llvmPackages_14.libllvm.override { enableSharedLibraries = true; }; + llvmSharedForTarget = pkgsBuildTarget.llvmPackages_14.libllvm.override { enableSharedLibraries = true; }; + + llvmBootstrapForDarwin = llvmPackages_11; + + # For use at runtime + llvmShared = llvm_14.override { enableSharedLibraries = true; }; + + # Expose llvmPackages used for rustc from rustc via passthru for LTO in Firefox + llvmPackagesForBuild = pkgsBuildBuild.llvmPackages_14; + + # Note: the version MUST be one version prior to the version we're + # building + bootstrapVersion = "1.59.0"; + + # fetch hashes by running `print-hashes.sh ${bootstrapVersion}` + bootstrapHashes = { + i686-unknown-linux-gnu = "f57ebfafed1e857b2b1dc1a22cf1133766f68a0759dc2f717dec54a8d4385dec"; + x86_64-unknown-linux-gnu = "0c1c2da3fa26372e5178123aa5bb0fdcd4933fbad9bfb268ffbd71807182ecae"; + x86_64-unknown-linux-musl = "c0ae76fa4bb0f1c85b86b9f7637db0fddf5084ce4c8f86c4d4acc3c41813201f"; + arm-unknown-linux-gnueabihf = "f934ddd8533d5df922e3397a5d30404930c5992c6c91c72d3e1475e2978e8793"; + armv7-unknown-linux-gnueabihf = "acb0f793c517de927b17e1c85135f6d58ae7430a8bd094a92009bcf0d4bbb8eb"; + aarch64-unknown-linux-gnu = "ab5da30a3de5433e26cbc74c56b9d97b569769fc2e456fc54378adc8baaee4f0"; + aarch64-unknown-linux-musl = "a3f8afdf23c98e6d25bf3b4bfcf5e9a4712f4c425f3754500931232d946204a9"; + x86_64-apple-darwin = "d82204f536af0c7bfd2ea2213dc46b99911860cfc5517f7321244412ae96f159"; + aarch64-apple-darwin = "5449ae915982967bae97746ce8bea30844f9ab40b4ee4da392b9997e0e7b2926"; + powerpc64le-unknown-linux-gnu = "6892a706ea8118344a4f4624b57a99460a784b5b30cccd9df430c33008d341f3"; + riscv64gc-unknown-linux-gnu = "e0cb22c2383d73b3928c17a630ae8d37f6787ddcea7871c9b3e21fd4560226b2"; + mips64el-unknown-linux-gnuabi64 = "2e2c404741b1dd02b5d73361f187568a91a8531997ade41bd855eca3972e2a5b"; + }; + + selectRustPackage = pkgs: pkgs.rust_1_60; + + rustcPatches = [ + ]; +} + +(builtins.removeAttrs args [ "fetchpatch" "pkgsBuildHost" "llvmPackages_11" "llvmPackages_14" "llvm_14"]) diff --git a/pkgs/development/compilers/rust/rustfmt-fix-self-tests.patch b/pkgs/development/compilers/rust/rustfmt-fix-self-tests.patch deleted file mode 100644 index b60332daef4..00000000000 --- a/pkgs/development/compilers/rust/rustfmt-fix-self-tests.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/src/tools/rustfmt/src/ignore_path.rs -+++ b/src/tools/rustfmt/src/ignore_path.rs -@@ -37,9 +37,9 @@ - #[nightly_only_test] - #[test] - fn test_ignore_path_set() { -- use std::path::{Path, PathBuf}; - use crate::config::{Config, FileName}; - use crate::ignore_path::IgnorePathSet; -+ use std::path::{Path, PathBuf}; - - let config = - Config::from_toml(r#"ignore = ["foo.rs", "bar_dir/*"]"#, Path::new("")).unwrap(); diff --git a/pkgs/development/compilers/rust/rustfmt.nix b/pkgs/development/compilers/rust/rustfmt.nix index 5916b6c07fb..2c2a1446093 100644 --- a/pkgs/development/compilers/rust/rustfmt.nix +++ b/pkgs/development/compilers/rust/rustfmt.nix @@ -21,9 +21,6 @@ rustPlatform.buildRustPackage rec { CFG_RELEASE = rustPlatform.rust.rustc.version; CFG_RELEASE_CHANNEL = if asNightly then "nightly" else "stable"; - # FIXME: seems fixed upstream, remove after the next update - patches = [ ./rustfmt-fix-self-tests.patch ]; - meta = with lib; { description = "A tool for formatting Rust code according to style guidelines"; homepage = "https://github.com/rust-lang-nursery/rustfmt"; diff --git a/pkgs/development/compilers/tinygo/default.nix b/pkgs/development/compilers/tinygo/default.nix index 218b207f243..935260dbcab 100644 --- a/pkgs/development/compilers/tinygo/default.nix +++ b/pkgs/development/compilers/tinygo/default.nix @@ -59,6 +59,6 @@ buildGoModule rec { homepage = "https://tinygo.org/"; description = "Go compiler for small places"; license = licenses.bsd3; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; }; } diff --git a/pkgs/development/compilers/uasm/default.nix b/pkgs/development/compilers/uasm/default.nix index f440208e947..7356175c87c 100644 --- a/pkgs/development/compilers/uasm/default.nix +++ b/pkgs/development/compilers/uasm/default.nix @@ -1,35 +1,42 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, testVersion +, uasm +}: stdenv.mkDerivation rec { pname = "uasm"; - version = "2.53"; + version = "2.55"; src = fetchFromGitHub { owner = "Terraspace"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-Aohwrcb/KTKUFFpfmqVDPNjJh1dMYSNnBJ2eFaP20pM="; + # Specifying only the tag results in the following error during download: + # the given path has multiple possibilities: #<Git::Ref:0x00007f618689c378>, #<Git::Ref:0x00007f618689c1e8> + # Probably because upstream has both a tag and a branch with the same name + rev = "refs/tags/v${version}"; + sha256 = "sha256-CIbHPKJa60SyJeFgF1Tux7RfJZBChhUVXR7HGa+gCtQ="; }; - # https://github.com/Terraspace/UASM/pull/154 - patches = [ - # fix `invalid operands to binary - (have 'char *' and 'uint_8 *' {aka 'unsigned char *'})` + patches = lib.optionals stdenv.isDarwin [ (fetchpatch { - name = "fix_pointers_compare.patch"; - url = "https://github.com/clouds56/UASM/commit/9cd3a400990e230571e06d4c758bd3bd35f90ab6.patch"; - sha256 = "sha256-8mY36dn+g2QNJ1JbWt/y4p0Ha9RSABnOE3vlWANuhsA="; - }) - # fix `dbgcv.c:*:*: fatal error: direct.h: No such file or directory` - (fetchpatch { - name = "fix_build_dbgcv_c_on_unix.patch"; - url = "https://github.com/clouds56/UASM/commit/806d54cf778246c96dcbe61a4649bf0aebcb0eba.patch"; - sha256 = "sha256-uc1LaizdYEh1Ry55Cq+6wrCa1OeBPFo74H5iBpmteAE="; + name = "fix-v2_55-compilation-on-macos.patch"; + url = "https://github.com/Terraspace/UASM/commit/b50c430cc3083c7f32e288a9f64fe1cafb03091d.patch"; + sha256 = "sha256-FGFB282LSEKtGD1cIRH+Qi5bye5Gx4xb0Ty4J03xjCU"; }) ]; enableParallelBuilding = true; - makefile = "gccLinux64.mak"; + makefile = + if stdenv.isDarwin then + "ClangOSX64.mak" + else + "gccLinux64.mak"; + + makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" ]; installPhase = '' runHook preInstall @@ -40,10 +47,16 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru.tests.version = testVersion { + package = uasm; + command = "uasm -h"; + version = "v${version}"; + }; + meta = with lib; { homepage = "http://www.terraspace.co.uk/uasm.html"; description = "A free MASM-compatible assembler based on JWasm"; - platforms = [ "x86_64-linux" ]; + platforms = platforms.unix; maintainers = with maintainers; [ thiagokokada ]; license = licenses.watcom; }; diff --git a/pkgs/development/compilers/vlang/default.nix b/pkgs/development/compilers/vlang/default.nix index 1786c54ac7e..0c24e67123c 100644 --- a/pkgs/development/compilers/vlang/default.nix +++ b/pkgs/development/compilers/vlang/default.nix @@ -46,7 +46,7 @@ stdenv.mkDerivation rec { homepage = "https://vlang.io/"; description = "Simple, fast, safe, compiled language for developing maintainable software"; license = licenses.mit; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; platforms = platforms.all; }; } diff --git a/pkgs/development/compilers/zulu/8.nix b/pkgs/development/compilers/zulu/8.nix index 48573c67241..00f18f1238f 100644 --- a/pkgs/development/compilers/zulu/8.nix +++ b/pkgs/development/compilers/zulu/8.nix @@ -61,18 +61,22 @@ in stdenv.mkDerivation { ]; nativeBuildInputs = [ - autoPatchelfHook makeWrapper + makeWrapper + ] ++ lib.optionals stdenv.isLinux [ + autoPatchelfHook ] ++ lib.optionals stdenv.isDarwin [ unzip ]; installPhase = '' + runHook preInstall + mkdir -p $out cp -r ./* "$out/" - + '' + lib.optionalString stdenv.isLinux '' # jni.h expects jni_md.h to be in the header search path. ln -s $out/include/linux/*_md.h $out/include/ - + '' + '' mkdir -p $out/nix-support printWords ${setJavaClassPath} > $out/nix-support/propagated-build-inputs @@ -87,6 +91,8 @@ in stdenv.mkDerivation { wrapProgram "$bin" --prefix LD_LIBRARY_PATH : "${runtimeLibraryPath}" fi done + '' + '' + runHook postInstall ''; preFixup = '' diff --git a/pkgs/development/compilers/zulu/default.nix b/pkgs/development/compilers/zulu/default.nix index 662d997d882..1b961c3f9e4 100644 --- a/pkgs/development/compilers/zulu/default.nix +++ b/pkgs/development/compilers/zulu/default.nix @@ -63,12 +63,16 @@ in stdenv.mkDerivation { ]; nativeBuildInputs = [ - autoPatchelfHook makeWrapper + makeWrapper + ] ++ lib.optionals stdenv.isLinux [ + autoPatchelfHook ] ++ lib.optionals stdenv.isDarwin [ unzip ]; installPhase = '' + runHook preInstall + mkdir -p $out cp -r ./* "$out/" '' + lib.optionalString stdenv.isLinux '' @@ -90,6 +94,8 @@ in stdenv.mkDerivation { for bin in $( find "$out" -executable -type f -not -name jspawnhelper ); do wrapProgram "$bin" --prefix LD_LIBRARY_PATH : "${runtimeLibraryPath}" done + '' + '' + runHook postInstall ''; preFixup = '' diff --git a/pkgs/development/coq-modules/Verdi/default.nix b/pkgs/development/coq-modules/Verdi/default.nix index 2701cf6f04c..4d76331fb99 100644 --- a/pkgs/development/coq-modules/Verdi/default.nix +++ b/pkgs/development/coq-modules/Verdi/default.nix @@ -6,10 +6,13 @@ with lib; mkCoqDerivation { owner = "uwplse"; inherit version; defaultVersion = with versions; switch coq.coq-version [ + { case = range "8.7" "8.15"; out = "20211026"; } { case = range "8.7" "8.14"; out = "20210524"; } { case = range "8.7" "8.13"; out = "20200131"; } { case = "8.6"; out = "20181102"; } ] null; + release."20211026".rev = "064cc4fb2347453bf695776ed820ffb5fbc1d804"; + release."20211026".sha256 = "sha256:13xrcyzay5sjszf5lg4s44wl9nrcz22n6gi4h95pkpj0ni5clinx"; release."20210524".rev = "54597d8ac7ab7dd4dae683f651237644bf77701e"; release."20210524".sha256 = "sha256:05wb0km2jkhvi8807glxk9fi1kll4lwisiyzkxhqvymz4x6v8xqv"; release."20200131".rev = "fdb4ede19d2150c254f0ebcfbed4fb9547a734b0"; diff --git a/pkgs/development/embedded/stm32/stm32flash/default.nix b/pkgs/development/embedded/stm32/stm32flash/default.nix index 52b30115499..d6e8d459896 100644 --- a/pkgs/development/embedded/stm32/stm32flash/default.nix +++ b/pkgs/development/embedded/stm32/stm32flash/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "stm32flash"; - version = "0.6"; + version = "0.7"; src = fetchurl { url = "mirror://sourceforge/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-7ptA1NPlzSi5k+CK4qLDxVm2vqhzDNfh1Acn3tsd2gk="; + sha256 = "sha256-xMnNi+x52mOxEdFXE+9cws2UfeykEdNdbjBl4ifcQUo="; }; buildFlags = [ "CC=${stdenv.cc.targetPrefix}cc" ]; diff --git a/pkgs/development/go-modules/generic/default.nix b/pkgs/development/go-modules/generic/default.nix index e2428edbb26..502a981596e 100644 --- a/pkgs/development/go-modules/generic/default.nix +++ b/pkgs/development/go-modules/generic/default.nix @@ -204,7 +204,7 @@ let if [ -n "$subPackages" ]; then echo "$subPackages" | sed "s,\(^\| \),\1./,g" else - find . -type f -name \*$type.go -exec dirname {} \; | grep -v "/vendor/" | sort --unique + find . -type f -name \*$type.go -exec dirname {} \; | grep -v "/vendor/" | sort --unique | grep -v "$exclude" fi } @@ -221,7 +221,6 @@ let export NIX_BUILD_CORES=1 fi for pkg in $(getGoDirs ""); do - grep -q "$exclude" <<<$pkg && continue echo "Building subPackage $pkg" buildGoDir install "$pkg" done diff --git a/pkgs/development/go-packages/generic/default.nix b/pkgs/development/go-packages/generic/default.nix index 3d633324eef..0559f7f07a7 100644 --- a/pkgs/development/go-packages/generic/default.nix +++ b/pkgs/development/go-packages/generic/default.nix @@ -184,7 +184,7 @@ let echo "$subPackages" | sed "s,\(^\| \),\1$goPackagePath/,g" else pushd "$NIX_BUILD_TOP/go/src" >/dev/null - find "$goPackagePath" -type f -name \*$type.go -exec dirname {} \; | grep -v "/vendor/" | sort | uniq + find "$goPackagePath" -type f -name \*$type.go -exec dirname {} \; | grep -v "/vendor/" | sort | uniq | grep -v "$exclude" popd >/dev/null fi } @@ -202,7 +202,6 @@ let export NIX_BUILD_CORES=1 fi for pkg in $(getGoDirs ""); do - grep -q "$exclude" <<<$pkg && continue echo "Building subPackage $pkg" buildGoDir install "$pkg" done diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 7bc823b3e84..66bd34bdbc0 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -1190,8 +1190,29 @@ self: super: { # Fix build with attr-2.4.48 (see #53716) xattr = appendPatch ./patches/xattr-fix-build.patch super.xattr; - # Some tests depend on a postgresql instance - esqueleto = dontCheck super.esqueleto; + esqueleto = + overrideCabal + (drv: { + postPatch = drv.postPatch or "" + '' + # patch out TCP usage: https://nixos.org/manual/nixpkgs/stable/#sec-postgresqlTestHook-tcp + sed -i test/PostgreSQL/Test.hs \ + -e s^host=localhost^^ + ''; + # Match the test suite defaults (or hardcoded values?) + preCheck = drv.preCheck or "" + '' + PGUSER=esqutest + PGDATABASE=esqutest + ''; + testFlags = drv.testFlags or [] ++ [ + # We don't have a MySQL test hook yet + "--skip=/Esqueleto/MySQL" + ]; + testToolDepends = drv.testToolDepends or [] ++ [ + pkgs.postgresql + pkgs.postgresqlTestHook + ]; + }) + super.esqueleto; # Requires API keys to run tests algolia = dontCheck super.algolia; @@ -1310,7 +1331,25 @@ self: super: { # Test suite requires database persistent-mysql = dontCheck super.persistent-mysql; - persistent-postgresql = dontCheck super.persistent-postgresql; + persistent-postgresql = + overrideCabal + (drv: { + postPatch = drv.postPath or "" + '' + # patch out TCP usage: https://nixos.org/manual/nixpkgs/stable/#sec-postgresqlTestHook-tcp + # NOTE: upstream host variable takes only two values... + sed -i test/PgInit.hs \ + -e s^'host=" <> host <> "'^^ + ''; + preCheck = drv.preCheck or "" + '' + PGDATABASE=test + PGUSER=test + ''; + testToolDepends = drv.testToolDepends or [] ++ [ + pkgs.postgresql + pkgs.postgresqlTestHook + ]; + }) + super.persistent-postgresql; # Fix EdisonAPI and EdisonCore for GHC 8.8: # https://github.com/robdockins/edison/pull/16 @@ -1515,8 +1554,13 @@ self: super: { }; pg-client = overrideCabal (drv: { librarySystemDepends = with pkgs; [ postgresql krb5.dev openssl.dev ]; - # wants a running DB to check against - doCheck = false; + testToolDepends = drv.testToolDepends or [] ++ [ + pkgs.postgresql pkgs.postgresqlTestHook + ]; + preCheck = drv.preCheck or "" + '' + # empty string means use default connection + export DATABASE_URL="" + ''; }) (super.pg-client.override { resource-pool = self.hasura-resource-pool; ekg-core = self.hasura-ekg-core; diff --git a/pkgs/development/interpreters/dart/default.nix b/pkgs/development/interpreters/dart/default.nix index 366b7df3edd..0891bfd2d8f 100644 --- a/pkgs/development/interpreters/dart/default.nix +++ b/pkgs/development/interpreters/dart/default.nix @@ -13,6 +13,10 @@ version = "2.15.1"; in { + "${version}-aarch64-darwin" = fetchurl { + url = "${base}/stable/release/${version}/sdk/dartsdk-macos-${aarch64}-release.zip"; + sha256 = "sha256-DDE4DpA2m8wKkUZuQDn4NpXVvtaJ6sIHeKNjk3RbpYE="; + }; "${version}-x86_64-darwin" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-macos-${x86_64}-release.zip"; sha256 = "sha256-s6bkwh2m5KdRr/WxWXwItO9YaDpp/HI3xjnS2UHmN+I="; @@ -47,6 +51,7 @@ stdenv.mkDerivation { mkdir -p $out cp -R * $out/ echo $libPath + '' + lib.optionalString(stdenv.isLinux) '' find $out/bin -executable -type f -exec patchelf --set-interpreter $(cat $NIX_CC/nix-support/dynamic-linker) {} \; ''; @@ -63,7 +68,7 @@ stdenv.mkDerivation { with C-style syntax. It offers compilation to JavaScript, interfaces, mixins, abstract classes, reified generics, and optional typing. ''; - platforms = [ "x86_64-linux" "i686-linux" "aarch64-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "i686-linux" "aarch64-linux" "x86_64-darwin" "aarch64-darwin" ]; license = licenses.bsd3; }; } diff --git a/pkgs/development/interpreters/gnu-apl/default.nix b/pkgs/development/interpreters/gnu-apl/default.nix index 0f666dd9af5..836a09961fa 100644 --- a/pkgs/development/interpreters/gnu-apl/default.nix +++ b/pkgs/development/interpreters/gnu-apl/default.nix @@ -11,14 +11,16 @@ stdenv.mkDerivation rec { buildInputs = [ readline gettext ncurses ]; - # Needed with GCC 8 NIX_CFLAGS_COMPILE = with lib; toString ((optionals stdenv.cc.isGNU [ + # Needed with GCC 8 "-Wno-error=int-in-bool-context" "-Wno-error=class-memaccess" "-Wno-error=restrict" "-Wno-error=format-truncation" # Needed with GCC 10 "-Wno-error=maybe-uninitialized" + # Needed with GCC 11 + "-Wno-error=misleading-indentation" ]) ++ optional stdenv.cc.isClang "-Wno-error=null-dereference"); patchPhase = lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/development/interpreters/luajit/2.0.nix b/pkgs/development/interpreters/luajit/2.0.nix index 5516bf002cd..f2fc16963ca 100644 --- a/pkgs/development/interpreters/luajit/2.0.nix +++ b/pkgs/development/interpreters/luajit/2.0.nix @@ -1,10 +1,10 @@ { self, callPackage, lib }: callPackage ./default.nix { inherit self; - version = "2.0.5-2021-10-02"; - rev = "d3294fa63b344173db68dd612c6d3801631e28d4"; + version = "2.0.5-2022-03-13"; + rev = "93a65d3cc263aef2d2feb3d7ff2206aca3bee17e"; isStable = true; - sha256 = "0ja6x7bv3iqnf6m8xk6qp1dgan2b7mys0ff86dw671fqqrfw28fn"; + hash = "sha256-Gp7OdfxBGkW59zxWUml2ugPABLUv2SezMiDblA/FZ7g="; extraMeta = { # this isn't precise but it at least stops the useless Hydra build platforms = with lib; filter (p: !hasPrefix "aarch64-" p) (platforms.linux ++ platforms.darwin); diff --git a/pkgs/development/interpreters/luajit/2.1.nix b/pkgs/development/interpreters/luajit/2.1.nix index 4898999281d..507bc40fcf6 100644 --- a/pkgs/development/interpreters/luajit/2.1.nix +++ b/pkgs/development/interpreters/luajit/2.1.nix @@ -1,8 +1,8 @@ { self, callPackage }: callPackage ./default.nix { inherit self; - version = "2.1.0-2021-10-27"; - rev = "b4b2dce9fc3ffaaaede39b36d06415311e2aa516"; + version = "2.1.0-2022-04-05"; + rev = "5e3c45c43bb0e0f1f2917d432e9d2dba12c42a6e"; isStable = false; - sha256 = "185s071aa0yffz8npgdxj7l98cs987vddb2l5pzfcdqfj41gn55q"; + hash = "sha256-Q+34hJDgyCqmtThHbxR16Nn7zhq4Ql142No2rO57HL0="; } diff --git a/pkgs/development/interpreters/luajit/default.nix b/pkgs/development/interpreters/luajit/default.nix index 4e2931aa768..480e3424413 100644 --- a/pkgs/development/interpreters/luajit/default.nix +++ b/pkgs/development/interpreters/luajit/default.nix @@ -4,7 +4,7 @@ , buildPackages , name ? "luajit-${version}" , isStable -, sha256 +, hash , rev , version , extraMeta ? { } @@ -46,7 +46,7 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "LuaJIT"; repo = "LuaJIT"; - inherit sha256 rev; + inherit hash rev; }; luaversion = "5.1"; diff --git a/pkgs/development/interpreters/perl/default.nix b/pkgs/development/interpreters/perl/default.nix index 81099b96745..9c3c34c73aa 100644 --- a/pkgs/development/interpreters/perl/default.nix +++ b/pkgs/development/interpreters/perl/default.nix @@ -1,4 +1,4 @@ -{ config, lib, stdenv, fetchurl, fetchpatch, fetchFromGitHub, pkgs, buildPackages +{ config, lib, stdenv, fetchurl, fetchFromGitHub, pkgs, buildPackages , callPackage , enableThreading ? true, coreutils, makeWrapper , zlib @@ -41,14 +41,7 @@ let ] ++ optional stdenv.isSunOS ./ld-shared.patch ++ optionals stdenv.isDarwin [ ./cpp-precomp.patch ./sw_vers.patch ] - ++ optionals crossCompiling [ - ./MakeMaker-cross.patch - # https://github.com/arsv/perl-cross/pull/120 - (fetchpatch { - url = "https://github.com/arsv/perl-cross/commit/3c318ae6572f8b36cb077c8b49c851e2f5fe181e.patch"; - sha256 = "0cmcy8bams3c68f6xadl52z2w378wcpdjzi3qi4pcyvcfs011l6g"; - }) - ]; + ++ optional crossCompiling ./MakeMaker-cross.patch; # This is not done for native builds because pwd may need to come from # bootstrap tools when building bootstrap perl. @@ -204,14 +197,14 @@ let priority = 6; # in `buildEnv' (including the one inside `perl.withPackages') the library files will have priority over files in `perl` }; } // optionalAttrs (stdenv.buildPlatform != stdenv.hostPlatform) rec { - crossVersion = "393821c7cf53774233aaf130ff2c8ccec701b0a9"; # Sep 22, 2021 + crossVersion = "1.3.7"; # Mar 15, 2022 perl-cross-src = fetchFromGitHub { name = "perl-cross-${crossVersion}"; owner = "arsv"; repo = "perl-cross"; rev = crossVersion; - sha256 = "1fn35b1773aibi2z54m0mar7114737mvfyp81wkdwhakrmzr5nv1"; + sha256 = "sha256-F7Vi3RAgIE/3NPlbD5zQ3Q8Ex9ddXTC4zoCRaOxXK0A="; }; depsBuildBuild = [ buildPackages.stdenv.cc makeWrapper ]; @@ -240,15 +233,15 @@ in { perl534 = common { perl = pkgs.perl534; buildPerl = buildPackages.perl534; - version = "5.34.0"; - sha256 = "16mywn5afpv1mczv9dlc1w84rbgjgrr0pyr4c0hhb2wnif0zq7jm"; + version = "5.34.1"; + sha256 = "sha256-NXlRpJGwuhzjYRJjki/ux4zNWB3dwkpEawM+JazyQqE="; }; # the latest Devel version perldevel = common { perl = pkgs.perldevel; buildPerl = buildPackages.perldevel; - version = "5.35.4"; - sha256 = "1ss2r0qq5li6d2qghfv1iah5nl6nraymd7b7ib1iy1395rwyhl4q"; + version = "5.35.9"; + sha256 = "sha256-/nmSCIIXHXoC68DxFM9b5GM2AKU4WlLbfWLgduanL7U="; }; } diff --git a/pkgs/development/interpreters/python/cpython/default.nix b/pkgs/development/interpreters/python/cpython/default.nix index fd5f4091846..97db4a9fffa 100644 --- a/pkgs/development/interpreters/python/cpython/default.nix +++ b/pkgs/development/interpreters/python/cpython/default.nix @@ -284,7 +284,7 @@ in with passthru; stdenv.mkDerivation { CPPFLAGS = concatStringsSep " " (map (p: "-I${getDev p}/include") buildInputs); LDFLAGS = concatStringsSep " " (map (p: "-L${getLib p}/lib") buildInputs); - LIBS = "${optionalString (!stdenv.isDarwin) "-lcrypt"} ${optionalString (ncurses != null) "-lncurses"}"; + LIBS = "${optionalString (!stdenv.isDarwin) "-lcrypt"}"; NIX_LDFLAGS = lib.optionalString stdenv.cc.isGNU ({ "glibc" = "-lgcc_s"; "musl" = "-lgcc_eh"; diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix index 47871fff320..8198b25bd6a 100644 --- a/pkgs/development/interpreters/python/default.nix +++ b/pkgs/development/interpreters/python/default.nix @@ -124,19 +124,19 @@ with pkgs; sourceVersion = { major = "3"; minor = "9"; - patch = "11"; + patch = "12"; suffix = ""; }; - sha256 = "sha256-ZnZ6NTCdck83DfnlA8FytO5ET0nWK5i8TspyUSPibEk="; + sha256 = "sha256-LNlLIGcOQVnG2atX+R2/JVuX2MGhRR0cNfTsGWit+XE="; }; python310 = { sourceVersion = { major = "3"; minor = "10"; - patch = "3"; + patch = "4"; suffix = ""; }; - sha256 = "sha256-WWxy3pmNw5IFvE9w7w2/ft7HQKMG0JtJqb0Kd4BnMNw="; + sha256 = "sha256-gL+SX1cdpDazUhCIbPefbrX6XWxXExa3NWg0NFH3ehk="; }; }; diff --git a/pkgs/development/interpreters/ruby/default.nix b/pkgs/development/interpreters/ruby/default.nix index ea31f354d0d..d30a2d2073e 100644 --- a/pkgs/development/interpreters/ruby/default.nix +++ b/pkgs/development/interpreters/ruby/default.nix @@ -59,14 +59,9 @@ let pname = "ruby"; inherit version; - src = if useRailsExpress then fetchFromGitHub { - owner = "ruby"; - repo = "ruby"; - rev = tag; - sha256 = sha256.git; - } else fetchurl { + src = fetchurl { url = "https://cache.ruby-lang.org/pub/ruby/${ver.majMin}/ruby-${ver}.tar.gz"; - sha256 = sha256.src; + inherit sha256; }; # Have `configure' avoid `/usr/bin/nroff' in non-chroot builds. @@ -100,17 +95,22 @@ let patchLevel = ver.patchLevel; }).${ver.majMinTiny} ++ op (lib.versionOlder ver.majMin "3.1") ./do-not-regenerate-revision.h.patch - ++ op (atLeast30 && useRailsExpress) ./do-not-update-gems-baseruby.patch - # Ruby prior to 3.0 has a bug the installer (tools/rbinstall.rb) but - # the resulting error was swallowed. Newer rubygems no longer swallows - # this error. We upgrade rubygems when rubygemsSupport is enabled, so - # we have to fix this bug to prevent the install step from failing. - # See https://github.com/ruby/ruby/pull/2930 - ++ op (!atLeast30 && rubygemsSupport) + ++ op (atLeast30 && useBaseRuby) ./do-not-update-gems-baseruby.patch + ++ ops (!atLeast30 && rubygemsSupport) [ + # We upgrade rubygems to a version that isn't compatible with the + # ruby 2.7 installer. Backport the upstream fix. + ./rbinstall-new-rubygems-compat.patch + + # Ruby prior to 3.0 has a bug the installer (tools/rbinstall.rb) but + # the resulting error was swallowed. Newer rubygems no longer swallows + # this error. We upgrade rubygems when rubygemsSupport is enabled, so + # we have to fix this bug to prevent the install step from failing. + # See https://github.com/ruby/ruby/pull/2930 (fetchpatch { url = "https://github.com/ruby/ruby/commit/261d8dd20afd26feb05f00a560abd99227269c1c.patch"; sha256 = "0wrii25cxcz2v8bgkrf7ibcanjlxwclzhayin578bf0qydxdm9qy"; - }); + }) + ]; postUnpack = opString rubygemsSupport '' rm -rf $sourceRoot/{lib,test}/rubygems* @@ -182,6 +182,11 @@ let sed -i '/CC_VERSION_MESSAGE/d' $rbConfig '' } + # Remove unnecessary external intermediate files created by gems + extMakefiles=$(find $out/lib/ruby/gems -name Makefile) + for makefile in $extMakefiles; do + make -C "$(dirname "$makefile")" distclean + done # Bundler tries to create this directory mkdir -p $out/nix-support cat > $out/nix-support/setup-hook <<EOF @@ -252,26 +257,17 @@ let in { ruby_2_7 = generic { - version = rubyVersion "2" "7" "5" ""; - sha256 = { - src = "1wc1hwmz4m6iqlmqag8liyld917p6a8dvnhnpd1v8d8jl80bjm97"; - git = "16565fyl7141hr6q6d74myhsz46lvgam8ifnacshi68vzibwjbbh"; - }; + version = rubyVersion "2" "7" "6" ""; + sha256 = "042xrdk7hsv4072bayz3f8ffqh61i8zlhvck10nfshllq063n877"; }; ruby_3_0 = generic { - version = rubyVersion "3" "0" "3" ""; - sha256 = { - src = "1b4j39zyyvdkf1ax2c6qfa40b4mxfkr87zghhw19fmnzn8f8d1im"; - git = "1q19w5i1jkfxn7qq6f9v9ngax9h52gxwijk7hp312dx6amwrkaim"; - }; + version = rubyVersion "3" "0" "4" ""; + sha256 = "0avj4g3s2839b2y4m6pk8kid74r8nj7k0qm2rsdcwjzhg8h7rd3h"; }; ruby_3_1 = generic { - version = rubyVersion "3" "1" "1" ""; - sha256 = { - src = "sha256-/m5Hgt6XRDl43bqLpL440iKqJNw+PwKmqOdwHA7rYZ0="; - git = "sha256-76t/tGyK5nz7nvcRdHJTjjckU+Kv+/kbTMiNWJ93jU8="; - }; + version = rubyVersion "3" "1" "2" ""; + sha256 = "0gm84ipk6mrfw94852w5h7xxk2lqrxjbnlwb88svf0lz70933131"; }; } diff --git a/pkgs/development/interpreters/ruby/patchsets.nix b/pkgs/development/interpreters/ruby/patchsets.nix index b76dc1a23b1..a0e2b90b0f4 100644 --- a/pkgs/development/interpreters/ruby/patchsets.nix +++ b/pkgs/development/interpreters/ruby/patchsets.nix @@ -1,15 +1,15 @@ { patchSet, useRailsExpress, ops, patchLevel, fetchpatch }: { - "2.7.5" = ops useRailsExpress [ + "2.7.6" = ops useRailsExpress [ "${patchSet}/patches/ruby/2.7/head/railsexpress/01-fix-broken-tests-caused-by-ad.patch" "${patchSet}/patches/ruby/2.7/head/railsexpress/02-improve-gc-stats.patch" "${patchSet}/patches/ruby/2.7/head/railsexpress/03-more-detailed-stacktrace.patch" ]; - "3.0.3" = ops useRailsExpress [ + "3.0.4" = ops useRailsExpress [ "${patchSet}/patches/ruby/3.0/head/railsexpress/01-improve-gc-stats.patch" "${patchSet}/patches/ruby/3.0/head/railsexpress/02-malloc-trim.patch" ]; - "3.1.1" = ops useRailsExpress [ # no patches yet (2021-12-25) + "3.1.2" = ops useRailsExpress [ # no patches yet (2021-12-25) ]; } diff --git a/pkgs/development/interpreters/ruby/rbinstall-new-rubygems-compat.patch b/pkgs/development/interpreters/ruby/rbinstall-new-rubygems-compat.patch new file mode 100644 index 00000000000..54ce8a357a8 --- /dev/null +++ b/pkgs/development/interpreters/ruby/rbinstall-new-rubygems-compat.patch @@ -0,0 +1,87 @@ +From 8e85d27f9ccfe152fc1b891c19f125915a907493 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?V=C3=ADt=20Ondruch?= <vondruch@redhat.com> +Date: Tue, 1 Oct 2019 12:03:33 +0200 +Subject: [PATCH] Use `Gem::Package` like object instead of monkey patching. + +1. This is similar to what RubyGems does and it is less magic [[1]]. +2. It avoids deprecated code paths in RubyGems [[2]]. + +[1]: https://github.com/rubygems/rubygems/blob/92892bbc3adba86a90756c385433835f6761b8da/lib/rubygems/installer.rb#L151 +[2]: https://github.com/rubygems/rubygems/blob/92892bbc3adba86a90756c385433835f6761b8da/lib/rubygems/installer.rb#L187 + +(cherry picked from commit e960ef6f18a25c637c54f00c75bb6c24f8ab55d0) +--- + tool/rbinstall.rb | 47 +++++++++++++++++++++++++++-------------------- + 1 file changed, 27 insertions(+), 20 deletions(-) + +diff --git a/tool/rbinstall.rb b/tool/rbinstall.rb +index 060390626f..28ae8c409a 100755 +--- a/tool/rbinstall.rb ++++ b/tool/rbinstall.rb +@@ -710,28 +710,34 @@ def remove_prefix(prefix, string) + end + end + +- class UnpackedInstaller < Gem::Installer +- module DirPackage +- def extract_files(destination_dir, pattern = "*") +- path = File.dirname(@gem.path) +- return if path == destination_dir +- File.chmod(0700, destination_dir) +- mode = pattern == "bin/*" ? $script_mode : $data_mode +- spec.files.each do |f| +- src = File.join(path, f) +- dest = File.join(without_destdir(destination_dir), f) +- makedirs(dest[/.*(?=\/)/m]) +- install src, dest, :mode => mode +- end +- File.chmod($dir_mode, destination_dir) ++ class DirPackage ++ attr_reader :spec ++ ++ attr_accessor :dir_mode ++ attr_accessor :prog_mode ++ attr_accessor :data_mode ++ ++ def initialize(spec) ++ @spec = spec ++ @src_dir = File.dirname(@spec.loaded_from) ++ end ++ ++ def extract_files(destination_dir, pattern = "*") ++ path = @src_dir ++ return if path == destination_dir ++ File.chmod(0700, destination_dir) ++ mode = pattern == "bin/*" ? $script_mode : $data_mode ++ spec.files.each do |f| ++ src = File.join(path, f) ++ dest = File.join(without_destdir(destination_dir), f) ++ makedirs(dest[/.*(?=\/)/m]) ++ install src, dest, :mode => mode + end ++ File.chmod($dir_mode, destination_dir) + end ++ end + +- def initialize(spec, *options) +- super(spec.loaded_from, *options) +- @package.extend(DirPackage).spec = spec +- end +- ++ class UnpackedInstaller < Gem::Installer + def write_cache_file + end + +@@ -890,7 +896,8 @@ def install_default_gem(dir, srcdir) + if File.directory?(ext = "#{gem_ext_dir}/#{spec.full_name}") + spec.extensions[0] ||= "-" + end +- ins = RbInstall::UnpackedInstaller.new(spec, options) ++ package = RbInstall::DirPackage.new spec ++ ins = RbInstall::UnpackedInstaller.new(package, options) + puts "#{INDENT}#{spec.name} #{spec.version}" + ins.install + File.chmod($data_mode, File.join(install_dir, "specifications", "#{spec.full_name}.gemspec")) +-- +2.35.1 + diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index d8d81492f91..1ce2b1525f0 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -22,6 +22,9 @@ , waylandSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid , wayland , wayland-protocols +, drmSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid +, libdrm +, mesa , libxkbcommon , dbusSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid , dbus @@ -92,7 +95,8 @@ stdenv.mkDerivation rec { ++ optional pulseaudioSupport libpulseaudio ++ optional udevSupport udev ++ optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] - ++ optionals x11Support [ libICE libXi libXScrnSaver libXcursor libXinerama libXext libXrandr libXxf86vm ]; + ++ optionals x11Support [ libICE libXi libXScrnSaver libXcursor libXinerama libXext libXrandr libXxf86vm ] + ++ optionals drmSupport [ libdrm mesa ]; buildInputs = [ libiconv ] ++ dlopenBuildInputs diff --git a/pkgs/development/libraries/argagg/0001-catch.diff b/pkgs/development/libraries/argagg/0001-catch.diff new file mode 100644 index 00000000000..f99649d5681 --- /dev/null +++ b/pkgs/development/libraries/argagg/0001-catch.diff @@ -0,0 +1,20 @@ +--- old/test/doctest.h 2019-03-05 18:04:06.143740733 +0300 ++++ new/test/doctest.h 2019-03-05 18:04:43.577284916 +0300 +@@ -1307,7 +1307,7 @@ + __FILE__, __LINE__, #expr, #as); \ + try { \ + expr; \ +- } catch(as) { \ ++ } catch(as e) { \ + _DOCTEST_RB.m_threw = true; \ + _DOCTEST_RB.m_threw_as = true; \ + } catch(...) { _DOCTEST_RB.m_threw = true; } \ +@@ -1332,7 +1332,7 @@ + #define DOCTEST_REQUIRE_THROWS(expr) DOCTEST_ASSERT_THROWS(expr, DT_REQUIRE_THROWS) + + #define DOCTEST_WARN_THROWS_AS(expr, ex) DOCTEST_ASSERT_THROWS_AS(expr, ex, DT_WARN_THROWS_AS) +-#define DOCTEST_CHECK_THROWS_AS(expr, ex) DOCTEST_ASSERT_THROWS_AS(expr, ex, DT_CHECK_THROWS_AS) ++#define DOCTEST_CHECK_THROWS_AS(expr, ex) DOCTEST_ASSERT_THROWS_AS(expr, const ex &, DT_CHECK_THROWS_AS) + #define DOCTEST_REQUIRE_THROWS_AS(expr, ex) DOCTEST_ASSERT_THROWS_AS(expr, ex, DT_REQUIRE_THROWS_AS) + + #define DOCTEST_WARN_NOTHROW(expr) DOCTEST_ASSERT_NOTHROW(expr, DT_WARN_NOTHROW) diff --git a/pkgs/development/libraries/argagg/default.nix b/pkgs/development/libraries/argagg/default.nix new file mode 100644 index 00000000000..7ff9eaac1e3 --- /dev/null +++ b/pkgs/development/libraries/argagg/default.nix @@ -0,0 +1,46 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +}: + +stdenv.mkDerivation rec { + pname = "argagg"; + version = "0.4.6"; + + src = fetchFromGitHub { + owner = "vietjtnguyen"; + repo = pname; + rev = version; + hash = "sha256-MCtlAPfwdJpgfS8IH+zlcgaaxZ5AsP4hJvbZAFtOa4o="; + }; + + patches = [ + # Fix compilation of macro catch statement + ./0001-catch.diff + ]; + + nativeBuildInputs = [ + cmake + ]; + + meta = with lib; { + homepage = "https://github.com/vietjtnguyen/argagg"; + description = "Argument Aggregator"; + longDescription = '' + argagg is yet another C++ command line argument/option parser. It was + written as a simple and idiomatic alternative to other frameworks like + getopt, Boost program options, TCLAP, and others. The goal is to achieve + the majority of argument parsing needs in a simple manner with an easy to + use API. It operates as a single pass over all arguments, recognizing + flags prefixed by - (short) or -- (long) and aggregating them into easy to + access structures with lots of convenience functions. It defers processing + types until you access them, so the result structures end up just being + pointers into the original command line argument C-strings. + ''; + license = licenses.mit; + maintainers = with maintainers; [ AndersonTorres ]; + platforms = with platforms; all; + badPlatforms = [ "aarch64-darwin" ]; + }; +} diff --git a/pkgs/development/libraries/audio/libopenmpt/default.nix b/pkgs/development/libraries/audio/libopenmpt/default.nix new file mode 100644 index 00000000000..35a79e3b358 --- /dev/null +++ b/pkgs/development/libraries/audio/libopenmpt/default.nix @@ -0,0 +1,66 @@ +{ config +, lib +, stdenv +, fetchurl +, zlib +, pkg-config +, mpg123 +, libogg +, libvorbis +, portaudio +, libsndfile +, flac +, usePulseAudio ? config.pulseaudio or stdenv.isLinux +, libpulseaudio +}: + +stdenv.mkDerivation rec { + pname = "libopenmpt"; + version = "0.6.2"; + + outputs = [ "out" "dev" "bin" ]; + + src = fetchurl { + url = "https://lib.openmpt.org/files/libopenmpt/src/libopenmpt-${version}+release.autotools.tar.gz"; + sha256 = "1dp645gg6d3pzjh82srq1d7qvyxi5h22k7yfdjiyzbyry8pxdh2h"; + }; + + enableParallelBuilding = true; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + zlib + mpg123 + libogg + libvorbis + portaudio + libsndfile + flac + ] ++ lib.optional usePulseAudio libpulseaudio; + + configureFlags = lib.optional (!usePulseAudio) "--without-pulseaudio"; + + doCheck = true; + + postFixup = '' + moveToOutput share/doc $dev + ''; + + passthru.updateScript = ./update.sh; + + meta = with lib; { + description = "Cross-platform C++ and C library to decode tracked music files into a raw PCM audio stream"; + longDescription = '' + libopenmpt is a cross-platform C++ and C library to decode tracked music files (modules) into a raw PCM audio stream. + openmpt123 is a cross-platform command-line or terminal based module file player. + libopenmpt is based on the player code of the OpenMPT project. + ''; + homepage = "https://lib.openmpt.org/libopenmpt/"; + license = licenses.bsd3; + maintainers = with maintainers; [ OPNA2608 ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/audio/libopenmpt/update.sh b/pkgs/development/libraries/audio/libopenmpt/update.sh new file mode 100755 index 00000000000..2d4e5afac0b --- /dev/null +++ b/pkgs/development/libraries/audio/libopenmpt/update.sh @@ -0,0 +1,31 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p common-updater-scripts curl xmlstarlet + +attr=libopenmpt + +set -eu -o pipefail + +# Get update notifications, remove updates for libopenmpt-modplug, find latest eligible & extract versions +versions="$( + curl -s 'https://lib.openmpt.org/libopenmpt/feed.xml' | + xmlstarlet sel -N atom="http://www.w3.org/2005/Atom" -t -m /atom:feed/atom:entry -v atom:title -n | + grep -v 'libopenmpt-modplug' | head -n1 | + grep -Eo '([0-9][^,\s]+)' | tr '\n' ' ' +)" +echo "Latest $attr versions: $versions" + +# Find a version that is > current version and not a rc +# rc's have different download path and a full release will usually follow shortly +currentVersion="$(nix-instantiate --eval -E "with import ./. {}; $attr.version" | tr -d '"')" +echo "Current $attr version: $currentVersion" +for version in $versions; do + (echo "$version" | grep -q 'rc') && continue + [ "$version" = "$(printf '%s\n%s' "$version" "$currentVersion" | sort -V | head -n1)" ] && continue + + echo "Updating to $version. Please check if other versions qualify for backport to stable!" + update-source-version "$attr" "$version" + exit 0 +done + +echo "No version eligible for bump." +exit 0 diff --git a/pkgs/development/libraries/audio/lilv/default.nix b/pkgs/development/libraries/audio/lilv/default.nix index a29fda0ec2b..14b0d4c5e46 100644 --- a/pkgs/development/libraries/audio/lilv/default.nix +++ b/pkgs/development/libraries/audio/lilv/default.nix @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config python3 wafHook ]; buildInputs = [ serd sord sratom ]; propagatedBuildInputs = [ lv2 ]; + dontAddWafCrossFlags = true; passthru.tests = { inherit pipewire; diff --git a/pkgs/development/libraries/audio/lv2/default.nix b/pkgs/development/libraries/audio/lv2/default.nix index d0ef2e65c59..6371a52b4df 100644 --- a/pkgs/development/libraries/audio/lv2/default.nix +++ b/pkgs/development/libraries/audio/lv2/default.nix @@ -22,6 +22,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config wafHook + python3 ]; buildInputs = [ @@ -35,6 +36,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals stdenv.isDarwin [ "--lv2dir=${placeholder "out"}/lib/lv2" ]; + dontAddWafCrossFlags = true; passthru.tests = { inherit pipewire; diff --git a/pkgs/development/libraries/audio/sratom/default.nix b/pkgs/development/libraries/audio/sratom/default.nix index 1a40d249fd5..67a66dbfe5a 100644 --- a/pkgs/development/libraries/audio/sratom/default.nix +++ b/pkgs/development/libraries/audio/sratom/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config wafHook python3 ]; buildInputs = [ lv2 serd sord ]; + dontAddWafCrossFlags = true; meta = with lib; { homepage = "http://drobilla.net/software/sratom"; diff --git a/pkgs/development/libraries/aws-c-sdkutils/default.nix b/pkgs/development/libraries/aws-c-sdkutils/default.nix index f5b5dfaeebc..6fb04fbb3a2 100644 --- a/pkgs/development/libraries/aws-c-sdkutils/default.nix +++ b/pkgs/development/libraries/aws-c-sdkutils/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "aws-c-sdkutils"; - version = "0.1.1"; + version = "0.1.2"; src = fetchFromGitHub { owner = "awslabs"; repo = "aws-c-sdkutils"; rev = "v${version}"; - sha256 = "sha256-jYeyNEoJsF67XQAkmC7oegnIRBRD3FXKf5wF/NCVb4o="; + sha256 = "sha256-G+ykP39EmI8BCeulTsZ/OSFKRzXVbEK0+mtJ3tugl5M="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/aws-sdk-cpp/default.nix b/pkgs/development/libraries/aws-sdk-cpp/default.nix index 769cc2d3bd2..3cd846c87a1 100644 --- a/pkgs/development/libraries/aws-sdk-cpp/default.nix +++ b/pkgs/development/libraries/aws-sdk-cpp/default.nix @@ -1,7 +1,19 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, curl, openssl, s2n-tls, zlib +{ lib +, stdenv +, fetchFromGitHub +, cmake +, curl +, openssl +, s2n-tls +, zlib , aws-crt-cpp -, aws-c-cal, aws-c-common, aws-c-event-stream, aws-c-io, aws-checksums -, CoreAudio, AudioToolbox +, aws-c-cal +, aws-c-common +, aws-c-event-stream +, aws-c-io +, aws-checksums +, CoreAudio +, AudioToolbox , # Allow building a limited set of APIs, e.g. ["s3" "ec2"]. apis ? ["*"] , # Whether to enable AWS' custom memory management. @@ -18,16 +30,31 @@ in stdenv.mkDerivation rec { pname = "aws-sdk-cpp"; - version = "1.9.150"; + version = "1.9.238"; src = fetchFromGitHub { owner = "aws"; repo = "aws-sdk-cpp"; rev = version; - sha256 = "sha256-fgLdXWQKHaCwulrw9KV3vpQ71DjnQAL4heIRW7Rk7UY="; + sha256 = "sha256-pEmsTfZXsvJMV79dGkjDNbUVajwyoYgzE5DCsC53pGY="; }; postPatch = '' + # Missing includes for GCC11 + sed '5i#include <thread>' -i \ + aws-cpp-sdk-cloudfront-integration-tests/CloudfrontOperationTest.cpp \ + aws-cpp-sdk-cognitoidentity-integration-tests/IdentityPoolOperationTest.cpp \ + aws-cpp-sdk-dynamodb-integration-tests/TableOperationTest.cpp \ + aws-cpp-sdk-elasticfilesystem-integration-tests/ElasticFileSystemTest.cpp \ + aws-cpp-sdk-lambda-integration-tests/FunctionTest.cpp \ + aws-cpp-sdk-mediastore-data-integration-tests/MediaStoreDataTest.cpp \ + aws-cpp-sdk-queues/source/sqs/SQSQueue.cpp \ + aws-cpp-sdk-redshift-integration-tests/RedshiftClientTest.cpp \ + aws-cpp-sdk-s3-crt-integration-tests/BucketAndObjectOperationTest.cpp \ + aws-cpp-sdk-s3-integration-tests/BucketAndObjectOperationTest.cpp \ + aws-cpp-sdk-s3control-integration-tests/S3ControlTest.cpp \ + aws-cpp-sdk-sqs-integration-tests/QueueOperationTest.cpp \ + aws-cpp-sdk-transfer-tests/TransferTests.cpp # Flaky on Hydra rm aws-cpp-sdk-core-tests/aws/auth/AWSCredentialsProviderTest.cpp # Includes aws-c-auth private headers, so only works with submodule build @@ -82,12 +109,6 @@ stdenv.mkDerivation rec { patches = [ ./cmake-dirs.patch - - # fix cmake config - (fetchpatch { - url = "https://github.com/aws/aws-sdk-cpp/commit/b102aaf5693c4165c84b616ab9ffb9edfb705239.diff"; - sha256 = "sha256-38QBo3MEFpyHPb8jZEURRPkoeu4DqWhVeErJayiHKF0="; - }) ]; # Builds in 2+h with 2 cores, and ~10m with a big-parallel builder. diff --git a/pkgs/development/libraries/belle-sip/default.nix b/pkgs/development/libraries/belle-sip/default.nix index 4032734416e..e1b517f66bf 100644 --- a/pkgs/development/libraries/belle-sip/default.nix +++ b/pkgs/development/libraries/belle-sip/default.nix @@ -30,9 +30,10 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DENABLE_STATIC=NO" ]; NIX_CFLAGS_COMPILE = toString [ + "-Wno-error=cast-function-type" "-Wno-error=deprecated-declarations" "-Wno-error=format-truncation" - "-Wno-error=cast-function-type" + "-Wno-error=stringop-overflow" ]; propagatedBuildInputs = [ libantlr3c mbedtls bctoolbox ]; diff --git a/pkgs/development/libraries/clucene-core/default.nix b/pkgs/development/libraries/clucene-core/default.nix index 6f0eb8dfff0..c767e9f1d2f 100644 --- a/pkgs/development/libraries/clucene-core/default.nix +++ b/pkgs/development/libraries/clucene-core/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation rec { patches = [ ./gcc6.patch ]; + NIX_CFLAGS_COMPILE = [ + "-std=c++11" + ]; + meta = with lib; { description = "Core library for full-featured text search engine"; longDescription = '' diff --git a/pkgs/development/libraries/cpp-ipfs-api/default.nix b/pkgs/development/libraries/cpp-ipfs-api/default.nix index 839ddb9b76f..315a477e72a 100644 --- a/pkgs/development/libraries/cpp-ipfs-api/default.nix +++ b/pkgs/development/libraries/cpp-ipfs-api/default.nix @@ -15,6 +15,10 @@ stdenv.mkDerivation { buildInputs = [ curl ]; propagatedBuildInputs = [ nlohmann_json ]; + NIX_CFLAGS_COMPILE = [ + "-Wno-error=range-loop-construct" + ]; + meta = with lib; { description = "IPFS C++ API client library"; homepage = "https://github.com/vasild/cpp-ipfs-api"; diff --git a/pkgs/development/libraries/cutelyst/default.nix b/pkgs/development/libraries/cutelyst/default.nix index 9f7d020feaf..d7fe4e92802 100644 --- a/pkgs/development/libraries/cutelyst/default.nix +++ b/pkgs/development/libraries/cutelyst/default.nix @@ -14,20 +14,28 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ cmake pkg-config wrapQtAppsHook ]; - buildInputs = [ qtbase libuuid libcap uwsgi grantlee pcre ]; + buildInputs = [ + qtbase + grantlee + ] ++ lib.optionals stdenv.isLinux [ + libuuid + libcap + uwsgi + pcre + ]; cmakeFlags = [ - "-DPLUGIN_UWSGI=ON" + "-DPLUGIN_UWSGI=${if stdenv.isLinux then "ON" else "OFF"}" # Missing uwsgi symbols on Darwin "-DPLUGIN_STATICCOMPRESSED=ON" "-DPLUGIN_CSRFPROTECTION=ON" "-DPLUGIN_VIEW_GRANTLEE=ON" ]; - preBuild = '' + preBuild = lib.optionalString stdenv.isLinux '' export LD_LIBRARY_PATH="$LD_LIBRARY_PATH''${LD_LIBRARY_PATH:+:}`pwd`/Cutelyst:`pwd`/EventLoopEPoll" ''; - postBuild = '' + postBuild = lib.optionalString stdenv.isLinux '' unset LD_LIBRARY_PATH ''; @@ -35,6 +43,7 @@ stdenv.mkDerivation rec { description = "C++ Web Framework built on top of Qt"; homepage = "https://cutelyst.org/"; license = licenses.lgpl21Plus; + platforms = platforms.unix; maintainers = with maintainers; [ fpletz ]; }; } diff --git a/pkgs/development/libraries/faudio/default.nix b/pkgs/development/libraries/faudio/default.nix index baf2b102437..58601c39a57 100644 --- a/pkgs/development/libraries/faudio/default.nix +++ b/pkgs/development/libraries/faudio/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "faudio"; - version = "21.10"; + version = "22.02"; src = fetchFromGitHub { owner = "FNA-XNA"; repo = "FAudio"; rev = version; - sha256 = "sha256-gh/QYH25j9A+XalW6ajRjs+yOYEfkZmw11CHjR6LK1E="; + sha256 = "sha256-qjXFpxoFF70aOaEq9/JfI2DtFxxHjyK2OnDaXMiqQMM="; }; nativeBuildInputs = [cmake]; diff --git a/pkgs/development/libraries/flatcc/default.nix b/pkgs/development/libraries/flatcc/default.nix index 6b40814119c..488cb6846d0 100644 --- a/pkgs/development/libraries/flatcc/default.nix +++ b/pkgs/development/libraries/flatcc/default.nix @@ -21,6 +21,11 @@ stdenv.mkDerivation rec { "-DCMAKE_BUILD_TYPE=Release" ]; + NIX_CFLAGS_COMPILE = [ + "-Wno-error=misleading-indentation" + "-Wno-error=stringop-overflow" + ]; + meta = { description = "FlatBuffers Compiler and Library in C for C "; homepage = "https://github.com/dvidelabs/flatcc"; diff --git a/pkgs/development/libraries/freetype/default.nix b/pkgs/development/libraries/freetype/default.nix index 5dfd5637002..7f906e19224 100644 --- a/pkgs/development/libraries/freetype/default.nix +++ b/pkgs/development/libraries/freetype/default.nix @@ -12,11 +12,11 @@ stdenv.mkDerivation rec { pname = "freetype"; - version = "2.11.1"; + version = "2.12.0"; src = fetchurl { url = "mirror://savannah/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-MzOufP2ohCnJenrmO30BqzmAdsO2cYLpYOVoQFDyxcg="; + sha256 = "sha256-71wzaqzBoHn/kmLWMI1sKgZt1NKpBTAcSt2ps1Q5kDM="; }; propagatedBuildInputs = [ zlib bzip2 libpng ]; # needed when linking against freetype diff --git a/pkgs/development/libraries/gensio/default.nix b/pkgs/development/libraries/gensio/default.nix index 90fe4658267..84d54b3bc35 100644 --- a/pkgs/development/libraries/gensio/default.nix +++ b/pkgs/development/libraries/gensio/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "gensio"; - version = "2.3.6"; + version = "2.3.7"; src = fetchFromGitHub { owner = "cminyard"; repo = pname; rev = "v${version}"; - sha256 = "sha256-aPTwN5DuUFPqLDwq73KvmBR8tEN5bIX6/JOZMfOAoow="; + sha256 = "sha256-g1o/udsIFLJ+gunvI2QtsnksPaa946jWKkcdmdGmQ/k="; }; passthru = { diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index 386130cc622..97da2a7c3be 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -69,6 +69,12 @@ stdenv.mkDerivation rec { ./glib-appinfo-watch.patch ./schema-override-variable.patch + # Add support for the GNOME’s default terminal emulator. + # https://gitlab.gnome.org/GNOME/glib/-/issues/2618 + ./gnome-console-support.patch + # Do the same for Pantheon’s terminal emulator. + ./elementary-terminal-support.patch + # GLib contains many binaries used for different purposes; # we will install them to different outputs: # 1. Tools for desktop environment ($bin) diff --git a/pkgs/development/libraries/glib/elementary-terminal-support.patch b/pkgs/development/libraries/glib/elementary-terminal-support.patch new file mode 100644 index 00000000000..0b8c8a70871 --- /dev/null +++ b/pkgs/development/libraries/glib/elementary-terminal-support.patch @@ -0,0 +1,16 @@ +diff --git a/gio/gdesktopappinfo.c b/gio/gdesktopappinfo.c +index a441bfec9..6bcd3e690 100644 +--- a/gio/gdesktopappinfo.c ++++ b/gio/gdesktopappinfo.c +@@ -2678,6 +2678,11 @@ prepend_terminal_to_vector (int *argc, + if (check != NULL) + pass_cmd_as_single_arg = TRUE; + } ++ if (check == NULL) { ++ check = g_find_program_in_path ("io.elementary.terminal"); ++ if (check != NULL) ++ pass_cmd_as_single_arg = TRUE; ++ } + if (check == NULL) + check = g_find_program_in_path ("tilix"); + if (check == NULL) diff --git a/pkgs/development/libraries/glib/gnome-console-support.patch b/pkgs/development/libraries/glib/gnome-console-support.patch new file mode 100644 index 00000000000..7f6894a5cec --- /dev/null +++ b/pkgs/development/libraries/glib/gnome-console-support.patch @@ -0,0 +1,55 @@ +diff --git a/gio/gdesktopappinfo.c b/gio/gdesktopappinfo.c +index 60d6debb2..a441bfec9 100644 +--- a/gio/gdesktopappinfo.c ++++ b/gio/gdesktopappinfo.c +@@ -2627,6 +2627,7 @@ prepend_terminal_to_vector (int *argc, + int i, j; + char **term_argv = NULL; + int term_argc = 0; ++ gboolean pass_cmd_as_single_arg = FALSE; + char *check; + char **the_argv; + +@@ -2672,6 +2673,11 @@ prepend_terminal_to_vector (int *argc, + } + else + { ++ if (check == NULL) { ++ check = g_find_program_in_path ("kgx"); ++ if (check != NULL) ++ pass_cmd_as_single_arg = TRUE; ++ } + if (check == NULL) + check = g_find_program_in_path ("tilix"); + if (check == NULL) +@@ -2697,14 +2703,27 @@ prepend_terminal_to_vector (int *argc, + } + } + +- real_argc = term_argc + *argc; ++ real_argc = term_argc + (pass_cmd_as_single_arg ? 1 : *argc); + real_argv = g_new (char *, real_argc + 1); + + for (i = 0; i < term_argc; i++) + real_argv[i] = term_argv[i]; + +- for (j = 0; j < *argc; j++, i++) +- real_argv[i] = (char *)the_argv[j]; ++ if (pass_cmd_as_single_arg) { ++ char **quoted_argv = g_new (char *, *argc + 1); ++ ++ for (j = 0; j < *argc; j++) { ++ quoted_argv[j] = g_shell_quote (the_argv[j]); ++ g_free (the_argv[j]); ++ } ++ quoted_argv[j] = NULL; ++ ++ real_argv[i++] = g_strjoinv (" ", quoted_argv); ++ g_strfreev (quoted_argv); ++ } else { ++ for (j = 0; j < *argc; j++, i++) ++ real_argv[i] = (char *)the_argv[j]; ++ } + + real_argv[i] = NULL; + diff --git a/pkgs/development/libraries/glm/default.nix b/pkgs/development/libraries/glm/default.nix index 81b0b47d5ba..d4c836b6912 100644 --- a/pkgs/development/libraries/glm/default.nix +++ b/pkgs/development/libraries/glm/default.nix @@ -28,6 +28,11 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ]; + NIX_CFLAGS_COMPILE = + lib.optionals (stdenv.cc.isGNU && lib.versionAtLeast stdenv.cc.version "11") [ + "-fno-ipa-modref" # https://gcc.gnu.org/bugzilla/show_bug.cgi?id=102823 + ]; + cmakeFlags = [ "-DBUILD_SHARED_LIBS=OFF" "-DBUILD_STATIC_LIBS=OFF" diff --git a/pkgs/development/libraries/glog/default.nix b/pkgs/development/libraries/glog/default.nix index 72758a1b3e7..98ae294c480 100644 --- a/pkgs/development/libraries/glog/default.nix +++ b/pkgs/development/libraries/glog/default.nix @@ -1,27 +1,16 @@ -{ stdenv, lib, fetchFromGitHub, fetchpatch, cmake, gflags, perl }: +{ stdenv, lib, fetchFromGitHub, cmake, gflags, perl }: stdenv.mkDerivation rec { pname = "glog"; - version = "0.5.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "google"; repo = "glog"; rev = "v${version}"; - sha256 = "17014q25c99qyis6l3fwxidw6222bb269fdlr74gn7pzmzg4lvg3"; + sha256 = "sha256-xqRp9vaauBkKz2CXbh/Z4TWqhaUtqfbsSlbYZR/kW9s="; }; - patches = [ - # Fix duplicate-concatenated nix store path in cmake file, see: - # https://github.com/NixOS/nixpkgs/pull/144561#issuecomment-960296043 - # TODO: Remove when https://github.com/google/glog/pull/733 is merged and available. - (fetchpatch { - name = "glog-cmake-Fix-incorrect-relative-path-concatenation.patch"; - url = "https://github.com/google/glog/pull/733/commits/57c636c02784f909e4b5d3c2f0ecbdbb47097266.patch"; - sha256 = "1py93gkzmcyi2ypcwyj3nri210z8fmlaif51yflzmrrv507zd7bi"; - }) - ]; - nativeBuildInputs = [ cmake ]; propagatedBuildInputs = [ gflags ]; @@ -35,6 +24,8 @@ stdenv.mkDerivation rec { # TODO: Re-enable Darwin tests once we're on a release that has https://github.com/google/glog/issues/709#issuecomment-960381653 fixed doCheck = !stdenv.isDarwin; + # There are some non-thread safe tests that can fail + enableParallelChecking = false; checkInputs = [ perl ]; meta = with lib; { diff --git a/pkgs/development/libraries/graphene/0001-meson-add-options-for-tests-installation-dirs.patch b/pkgs/development/libraries/graphene/0001-meson-add-options-for-tests-installation-dirs.patch index 9111217ea08..36d81ca9f13 100644 --- a/pkgs/development/libraries/graphene/0001-meson-add-options-for-tests-installation-dirs.patch +++ b/pkgs/development/libraries/graphene/0001-meson-add-options-for-tests-installation-dirs.patch @@ -1,12 +1,12 @@ -From 57bed86429db9d871f1442c94f14e94e38972ca3 Mon Sep 17 00:00:00 2001 +From d68fcb793d70032e978ecf8e0577eea955a741cf Mon Sep 17 00:00:00 2001 From: worldofpeace <worldofpeace@protonmail.ch> -Date: Thu, 16 May 2019 21:15:15 -0400 +Date: Sun, 10 Apr 2022 12:02:10 +0800 Subject: [PATCH] meson: add options for tests installation dirs --- meson_options.txt | 6 ++++++ - tests/meson.build | 23 ++++++++++++++++------- - 2 files changed, 22 insertions(+), 7 deletions(-) + tests/meson.build | 13 +++++++++++-- + 2 files changed, 17 insertions(+), 2 deletions(-) diff --git a/meson_options.txt b/meson_options.txt index b9a2fb5..4b8629f 100644 @@ -23,7 +23,7 @@ index b9a2fb5..4b8629f 100644 + value: '', + description: 'Installation directory for binary files in tests') diff --git a/tests/meson.build b/tests/meson.build -index 77281f5..7522456 100644 +index 2b925e7..3276849 100644 --- a/tests/meson.build +++ b/tests/meson.build @@ -21,8 +21,17 @@ unit_tests = [ @@ -32,66 +32,20 @@ index 77281f5..7522456 100644 -installed_test_datadir = join_paths(get_option('prefix'), get_option('datadir'), 'installed-tests', graphene_api_path) -installed_test_bindir = join_paths(get_option('prefix'), get_option('libexecdir'), 'installed-tests', graphene_api_path) -+test_suffix = join_paths('installed-tests', graphene_api_path) ++installed_test_suffix = join_paths('installed-tests', graphene_api_path) + -+test_datadir = join_paths(get_option('installed_test_datadir'), test_suffix) -+if test_datadir == '' -+ test_datadir = join_paths(get_option('prefix'), get_option('datadir'), test_suffix) ++installed_test_datadir = join_paths(get_option('installed_test_datadir'), installed_test_suffix) ++if installed_test_datadir == '' ++ installed_test_datadir = join_paths(get_option('prefix'), get_option('datadir'), installed_test_suffix) +endif + -+test_bindir = join_paths(get_option('installed_test_bindir'), test_suffix) -+if test_bindir == '' -+ test_bindir = join_paths(get_option('prefix'), get_option('libexecdir'), test_suffix) ++installed_test_bindir = join_paths(get_option('installed_test_bindir'), installed_test_suffix) ++if installed_test_bindir == '' ++ installed_test_bindir = join_paths(get_option('prefix'), get_option('libexecdir'), installed_test_suffix) +endif # Make tests conditional on having mutest-1 installed system-wide, or # available as a subproject -@@ -40,13 +49,13 @@ if mutest_dep.found() - output: wrapper, - command: [ - gen_installed_test, -- '--testdir=@0@'.format(installed_test_bindir), -+ '--testdir=@0@'.format(test_bindir), - '--testname=@0@'.format(unit), - '--outdir=@OUTDIR@', - '--outfile=@0@'.format(wrapper), - ], - install: get_option('installed_tests'), -- install_dir: installed_test_datadir, -+ install_dir: test_datadir, - ) - - test(unit, -@@ -55,7 +64,7 @@ if mutest_dep.found() - include_directories: graphene_inc, - c_args: common_cflags, - install: get_option('installed_tests'), -- install_dir: installed_test_bindir, -+ install_dir: test_bindir, - ), - env: ['MUTEST_OUTPUT=tap'], - protocol: 'tap', -@@ -66,17 +75,18 @@ endif - if build_gir and host_system == 'linux' and not meson.is_cross_build() - foreach unit: ['introspection.py'] - wrapper = '@0@.test'.format(unit) -+ install_data(unit, install_dir: test_bindir) - custom_target(wrapper, - output: wrapper, - command: [ - gen_installed_test, -- '--testdir=@0@'.format(installed_test_bindir), -+ '--testdir=@0@'.format(test_bindir), - '--testname=@0@'.format(unit), - '--outdir=@OUTDIR@', - '--outfile=@0@'.format(wrapper), - ], - install: get_option('installed_tests'), -- install_dir: installed_test_datadir, -+ install_dir: test_datadir, - ) - - test(unit, -- -2.31.1 +2.35.1 diff --git a/pkgs/development/libraries/graphene/default.nix b/pkgs/development/libraries/graphene/default.nix index 22c0e044f1e..b883c549da5 100644 --- a/pkgs/development/libraries/graphene/default.nix +++ b/pkgs/development/libraries/graphene/default.nix @@ -1,5 +1,7 @@ -{ lib, stdenv +{ stdenv +, lib , fetchFromGitHub +, fetchpatch , nix-update-script , pkg-config , meson @@ -17,7 +19,7 @@ stdenv.mkDerivation rec { pname = "graphene"; - version = "1.10.6"; + version = "1.10.8"; outputs = [ "out" ] ++ lib.optionals (stdenv.buildPlatform == stdenv.hostPlatform) [ "devdoc" "installedTests" ]; @@ -26,12 +28,21 @@ stdenv.mkDerivation rec { owner = "ebassi"; repo = pname; rev = version; - sha256 = "v6YH3fRMTzhp7wmU8in9ukcavzHmOAW54EK9ZwQyFxc="; + sha256 = "P6JQhSktzvyMHatP/iojNGXPmcsxsFxdYerXzS23ojI="; }; patches = [ # Add option for changing installation path of installed tests. ./0001-meson-add-options-for-tests-installation-dirs.patch + + # Disable flaky simd_operators_reciprocal test + # https://github.com/ebassi/graphene/issues/246 + (fetchpatch { + url = "https://github.com/ebassi/graphene/commit/4fbdd07ea3bcd0964cca3966010bf71cb6fa8209.patch"; + sha256 = "uFkkH0u4HuQ/ua1mfO7sJZ7MPrQdV/JON7mTYB4DW80="; + includes = [ "tests/simd.c" ]; + revert = true; + }) ]; depsBuildBuild = [ diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix index 37c2a1a4413..f55e2c2f6e4 100644 --- a/pkgs/development/libraries/grpc/default.nix +++ b/pkgs/development/libraries/grpc/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { pname = "grpc"; - version = "1.44.0"; # N.B: if you change this, please update: + version = "1.45.2"; # N.B: if you change this, please update: # pythonPackages.grpcio-tools # pythonPackages.grpcio-status @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { owner = "grpc"; repo = "grpc"; rev = "v${version}"; - sha256 = "sha256-pG8RtAJJCLnxm+3hW1YsikyeNr9pjIRANeYhDJfTPbo="; + sha256 = "sha256-l2r1NdbfwViXfLcwbfUgLueqfAVnLzI+gdEarlkIqkI="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/gsettings-desktop-schemas/default.nix b/pkgs/development/libraries/gsettings-desktop-schemas/default.nix index 085544a3612..acc143cd556 100644 --- a/pkgs/development/libraries/gsettings-desktop-schemas/default.nix +++ b/pkgs/development/libraries/gsettings-desktop-schemas/default.nix @@ -39,14 +39,20 @@ stdenv.mkDerivation rec { patchShebangs build-aux/meson/post-install.py ''; - # meson installs the schemas to share/glib-2.0/schemas - # We add the override file there too so it will be compiled and later moved by - # glib's setup hook. preInstall = '' + # Meson installs the schemas to share/glib-2.0/schemas + # We add the override file there too so it will be compiled and later moved by + # glib's setup hook. mkdir -p $out/share/glib-2.0/schemas cat - > $out/share/glib-2.0/schemas/remove-backgrounds.gschema.override <<- EOF + # These paths are supposed to refer to gnome-backgrounds + # but since we do not use FHS, they are broken. + # And we do not want to hardcode the correct paths + # since then every GTK app would pull in gnome-backgrounds. + # Let’s just override the broken paths so that people are not confused. [org.gnome.desktop.background] picture-uri=''' + picture-uri-dark=''' [org.gnome.desktop.screensaver] picture-uri=''' diff --git a/pkgs/development/libraries/gspell/default.nix b/pkgs/development/libraries/gspell/default.nix index be45a48090f..6c37529fb3d 100644 --- a/pkgs/development/libraries/gspell/default.nix +++ b/pkgs/development/libraries/gspell/default.nix @@ -16,14 +16,14 @@ stdenv.mkDerivation rec { pname = "gspell"; - version = "1.9.1"; + version = "1.10.0"; outputs = [ "out" "dev" ]; outputBin = "dev"; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "1pdb4gbjrs8mk6r0ipw5vxyvzav1wvkjq46kiq53r3nyznfpdfyw"; + sha256 = "gDu4hMAhXT/SKoXX8wQjr/iNl5LwWlGZ2KSJov+q4do="; }; patches = [ diff --git a/pkgs/development/libraries/hunspell/dictionaries.nix b/pkgs/development/libraries/hunspell/dictionaries.nix index ffa8c5d191b..4f520772b75 100644 --- a/pkgs/development/libraries/hunspell/dictionaries.nix +++ b/pkgs/development/libraries/hunspell/dictionaries.nix @@ -45,8 +45,7 @@ let maintainers = with maintainers; [ renzo ]; platforms = platforms.all; }; - nativeBuildInputs = [ unzip ]; - buildInputs = [ bash coreutils which zip ]; + nativeBuildInputs = [ bash coreutils which zip unzip ]; patchPhase = '' substituteInPlace ortograf/herramientas/make_dict.sh \ --replace /bin/bash bash \ @@ -234,7 +233,7 @@ let sha256 = "1a3055hp2bc4q4nlg3gmg0147p3a1zlfnc65xiv2v9pyql1nya8p"; }; - buildInputs = [ ispell perl hunspell ]; + nativeBuildInputs = [ ispell perl hunspell ]; dontBuild = true; diff --git a/pkgs/development/libraries/hwloc/default.nix b/pkgs/development/libraries/hwloc/default.nix index a1119f4be2c..1544bb946ea 100644 --- a/pkgs/development/libraries/hwloc/default.nix +++ b/pkgs/development/libraries/hwloc/default.nix @@ -8,11 +8,11 @@ with lib; stdenv.mkDerivation rec { pname = "hwloc"; - version = "2.7.0"; + version = "2.7.1"; src = fetchurl { url = "https://www.open-mpi.org/software/hwloc/v${versions.majorMinor version}/downloads/hwloc-${version}.tar.bz2"; - sha256 = "1q440fwvhnxz6j8k5bn3bxj86b3lzbr8fgib78l4iq6gxd9yx302"; + sha256 = "sha256-DU4dNsOnLF1hkBv9R3M39aTH4Kl12lcWUjfQDjXvUo0="; }; configureFlags = [ diff --git a/pkgs/development/libraries/kde-frameworks/fetch.sh b/pkgs/development/libraries/kde-frameworks/fetch.sh index 1e2e36d6784..50a0489529e 100644 --- a/pkgs/development/libraries/kde-frameworks/fetch.sh +++ b/pkgs/development/libraries/kde-frameworks/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/frameworks/5.92/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/frameworks/5.93/ -A '*.tar.xz' ) diff --git a/pkgs/development/libraries/kde-frameworks/srcs.nix b/pkgs/development/libraries/kde-frameworks/srcs.nix index 1cddd857dda..457ae06bb65 100644 --- a/pkgs/development/libraries/kde-frameworks/srcs.nix +++ b/pkgs/development/libraries/kde-frameworks/srcs.nix @@ -4,667 +4,667 @@ { attica = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/attica-5.92.0.tar.xz"; - sha256 = "0cy9dd8kazfkhas87bxjj5smmzay3gvkjwsmy6gvkfxc6rvpqr5z"; - name = "attica-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/attica-5.93.0.tar.xz"; + sha256 = "1qcj0n00ma6lyhbdk5dx2a1iwjqwzkbqvrwdhv8hgsqvj44q1hc1"; + name = "attica-5.93.0.tar.xz"; }; }; baloo = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/baloo-5.92.0.tar.xz"; - sha256 = "0xd4a0p22gjm523ymlyd5nfgp8z3ayb0nq6a04h5py507mc70d98"; - name = "baloo-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/baloo-5.93.0.tar.xz"; + sha256 = "1kfmmsinpnsh169dw8ycl9cavw4n7pfwx4davgfx12nvzmlibl95"; + name = "baloo-5.93.0.tar.xz"; }; }; bluez-qt = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/bluez-qt-5.92.0.tar.xz"; - sha256 = "1dlasb39kqrcql6hq0sl74ax3n5bdcy3pkhvc9vwpf9dxn1j93gm"; - name = "bluez-qt-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/bluez-qt-5.93.0.tar.xz"; + sha256 = "091n2bcvzczn28zkry5yxfrg0zpx78y2la3rhdybb4bplgm88pdb"; + name = "bluez-qt-5.93.0.tar.xz"; }; }; breeze-icons = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/breeze-icons-5.92.0.tar.xz"; - sha256 = "0rj30r52ca6njx00gmmni4k70yn8873ihxfbc66lklwzk1irdq29"; - name = "breeze-icons-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/breeze-icons-5.93.0.tar.xz"; + sha256 = "1rh39pgyhz73lly7n9sp1z16z6isw2bbx284d2ilb9lanjkdyrs3"; + name = "breeze-icons-5.93.0.tar.xz"; }; }; extra-cmake-modules = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/extra-cmake-modules-5.92.0.tar.xz"; - sha256 = "1vq3sd4qfr4hjcgqyfpykcz5wyagbfvrd4p24pdki1zjqn5j76pq"; - name = "extra-cmake-modules-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/extra-cmake-modules-5.93.0.tar.xz"; + sha256 = "088b93ahiw00msn20iibp8642p2vy5zd8wb99vvwayv425xylg89"; + name = "extra-cmake-modules-5.93.0.tar.xz"; }; }; frameworkintegration = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/frameworkintegration-5.92.0.tar.xz"; - sha256 = "0pgcwfxxzvfvqyjfgqzsllzfy9il4y8xr8dzdyjmd5vccpvgd3mx"; - name = "frameworkintegration-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/frameworkintegration-5.93.0.tar.xz"; + sha256 = "19m2i09r7hzqj8dkmxdkj7lh5jilm332i7177aadm6v7xv4m8vhm"; + name = "frameworkintegration-5.93.0.tar.xz"; }; }; kactivities = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kactivities-5.92.0.tar.xz"; - sha256 = "1kfvg23gdl4k6azs6700j8i8ncl8c7rrc70w1i2xhphz27ybc1pw"; - name = "kactivities-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/kactivities-5.93.0.tar.xz"; + sha256 = "0hv8y6i03ib89ivmpfg4ifypnnia73la6ljp5frs3fykh91j0szb"; + name = "kactivities-5.93.0.tar.xz"; }; }; kactivities-stats = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kactivities-stats-5.92.0.tar.xz"; - sha256 = "0lgp7zxgjmjm02x4mydlv6ivmlxqjkklav5vfwgjgf6v1qp161i2"; - name = "kactivities-stats-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/kactivities-stats-5.93.0.tar.xz"; + sha256 = "1a03xznriszw12jd0a2c7snilzd23nbgglx096isw1cf49r9h1pi"; + name = "kactivities-stats-5.93.0.tar.xz"; }; }; kapidox = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kapidox-5.92.0.tar.xz"; - sha256 = "0vd5k4wmmawbhyy3cxj0gjidf4haghwbsbly9yr3zg3qb3g02ljg"; - name = "kapidox-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/kapidox-5.93.0.tar.xz"; + sha256 = "0nqxz2jg51kyis07k2jqk4ni1wly6zx8mv81lgqfhb9l6mm34a22"; + name = "kapidox-5.93.0.tar.xz"; }; }; karchive = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/karchive-5.92.0.tar.xz"; - sha256 = "1blzm6vf8kpflam4671r1y4svrsb79bglln7aia7baqh7a6a4xjh"; - name = "karchive-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/karchive-5.93.0.tar.xz"; + sha256 = "1yy7jibbjpi67d6aihz5kcq4ynq8c9j9ds5rz2vp00l682l2dqv1"; + name = "karchive-5.93.0.tar.xz"; }; }; kauth = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kauth-5.92.0.tar.xz"; - sha256 = "0a27z9xr5ccxfcxmx93vs4hgxc388nsd9ac906mdh475ivv4p0j4"; - name = "kauth-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/kauth-5.93.0.tar.xz"; + sha256 = "0v6s79n9bd75dzncz9rmp449j82945gralmcycsihqyzpxw00n1l"; + name = "kauth-5.93.0.tar.xz"; }; }; kbookmarks = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kbookmarks-5.92.0.tar.xz"; - sha256 = "0hym3558xnp3h7q8kf1ljcy65r3g37mcmqb1ll3nxd912rv4wl4r"; - name = "kbookmarks-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/kbookmarks-5.93.0.tar.xz"; + sha256 = "0gw6zl87xhm3k2qdmd6993xyj8i0y2z5yvlwsnq91glrzyazgvry"; + name = "kbookmarks-5.93.0.tar.xz"; }; }; kcalendarcore = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/kcalendarcore-5.92.0.tar.xz"; - sha256 = "0fhbas8i7i08z4x32yq49admiz8vk4h9vwgkh7qy14lbzf6ydwkg"; 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+ sha256 = "0q59xg00pxhva75rncwizjca7fjq7h7ib9hyyn14c28iv3i8qn5q"; + name = "networkmanager-qt-5.93.0.tar.xz"; }; }; oxygen-icons5 = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/oxygen-icons5-5.92.0.tar.xz"; - sha256 = "1wcy8bv4d6jns7vaisbvjc8nxriw9vkiz7j4za5ry7wnvlzv126a"; - name = "oxygen-icons5-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/oxygen-icons5-5.93.0.tar.xz"; + sha256 = "019h6my69cq32rlmnxkpnzix6m5r78rpzpn518snbrivvi23ykkk"; + name = "oxygen-icons5-5.93.0.tar.xz"; }; }; plasma-framework = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/plasma-framework-5.92.0.tar.xz"; - sha256 = "1xq66lyagjsgfashhqgqgqhda0rqfqf0l5yf1gc4ziv48mibrhn6"; - name = "plasma-framework-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/plasma-framework-5.93.0.tar.xz"; + sha256 = "08n3nnbds4smd0jdqidlshp10n643x25issnqbkxza1fxa3wd8nl"; + name = "plasma-framework-5.93.0.tar.xz"; }; }; prison = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/prison-5.92.0.tar.xz"; - sha256 = "07p47q8sva82hglfzp145a1sajlal8b3qshhkicc9rkbsngywvvy"; - name = "prison-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/prison-5.93.0.tar.xz"; + sha256 = "0mpvhbxxsnanf41cclhdbadw14979qbh3a7rf5mkq9ng49kdwhqz"; + name = "prison-5.93.0.tar.xz"; }; }; purpose = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/purpose-5.92.0.tar.xz"; - sha256 = "02j09zf18dwjk17mn841m7cm0qsn7gcz5lff8dad3yah0lc3wqcl"; - name = "purpose-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/purpose-5.93.0.tar.xz"; + sha256 = "1i1cx5s6mdrfvabvqkllycv5lmck73mwwck1hlhpxcnrqp3w02yw"; + name = "purpose-5.93.0.tar.xz"; }; }; qqc2-desktop-style = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/qqc2-desktop-style-5.92.0.tar.xz"; - sha256 = "1b5xr71lan7ixvd1nfxy9wj21h4wwidsaxa192sha1d8p49hhlwp"; - name = "qqc2-desktop-style-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/qqc2-desktop-style-5.93.0.tar.xz"; + sha256 = "1a597chr7awbmg2d64gylg1v9rsih33j6xyvp8r3bqi9ln2w07hn"; + name = "qqc2-desktop-style-5.93.0.tar.xz"; }; }; solid = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/solid-5.92.0.tar.xz"; - sha256 = "172sid8l1znzxxz0hi5m19yy4vg7l1nbghvzjvh18ssbmxcwh9l9"; - name = "solid-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/solid-5.93.0.tar.xz"; + sha256 = "1skb1lzib230crrhzbgzl0lch51a0bcrgq1jnpn3yy888vwz7vr2"; + name = "solid-5.93.0.tar.xz"; }; }; sonnet = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/sonnet-5.92.0.tar.xz"; - sha256 = "08jps1hy0qvk62wnzn50qi8iaay7xav3hbcj55sk70mm7pd1vz1i"; - name = "sonnet-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/sonnet-5.93.0.tar.xz"; + sha256 = "170d460vhm42vi21prjg5792h34flcbb2j5wx3r3pr6ybsj6n51w"; + name = "sonnet-5.93.0.tar.xz"; }; }; syndication = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/syndication-5.92.0.tar.xz"; - sha256 = "0ijxpnsygwzzybic5lp8gfq57y84vrp3bq7vdbjh3h0345vvk6hw"; - name = "syndication-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/syndication-5.93.0.tar.xz"; + sha256 = "08ysirymi5j6as8syvx3rxc7yh12ylwxz1a7yh6ifq370wv4xw9m"; + name = "syndication-5.93.0.tar.xz"; }; }; syntax-highlighting = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/syntax-highlighting-5.92.0.tar.xz"; - sha256 = "03p5qzf13nbf54gzad3q1q6i33iggz3ik0ydr9szhj92kfppwd4r"; - name = "syntax-highlighting-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/syntax-highlighting-5.93.0.tar.xz"; + sha256 = "06vixhzmmqvbgmzsrhgx0ncfxm80crp3gpy7axscjardjbw53nzb"; + name = "syntax-highlighting-5.93.0.tar.xz"; }; }; threadweaver = { - version = "5.92.0"; + version = "5.93.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.92/threadweaver-5.92.0.tar.xz"; - sha256 = "008in2wbl6zr404m9hbqdvy3d4r06mmb3jrr13myldwljqywzc28"; - name = "threadweaver-5.92.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.93/threadweaver-5.93.0.tar.xz"; + sha256 = "11gi0rfd02zjnn8fizhwzgxbaz0jw8m7jhrba56vqbh5fv9bf3bc"; + name = "threadweaver-5.93.0.tar.xz"; }; }; } diff --git a/pkgs/development/libraries/libarchive/default.nix b/pkgs/development/libraries/libarchive/default.nix index a448748ff22..240371917f1 100644 --- a/pkgs/development/libraries/libarchive/default.nix +++ b/pkgs/development/libraries/libarchive/default.nix @@ -1,36 +1,58 @@ -{ - fetchFromGitHub, lib, stdenv, pkg-config, autoreconfHook, - acl, attr, bzip2, e2fsprogs, libxml2, lzo, openssl, sharutils, xz, zlib, zstd, +{ lib +, stdenv +, fetchFromGitHub +, acl +, attr +, autoreconfHook +, bzip2 +, e2fsprogs +, lzo +, openssl +, pkg-config +, sharutils +, xz +, zlib +, zstd +# Optional but increases closure only negligibly. Also, while libxml2 builds +# fine on windows, libarchive has trouble linking windows things it depends on +# for some reason. +, xarSupport ? stdenv.hostPlatform.isUnix, libxml2 - # Optional but increases closure only negligibly. Also, while libxml2 - # builds fine on windows, but libarchive has trouble linking windows - # things it depends on for some reason. - xarSupport ? stdenv.hostPlatform.isUnix, - - # for passthru.tests - cmake, nix, samba +# for passthru.tests +, cmake +, nix +, samba }: assert xarSupport -> libxml2 != null; stdenv.mkDerivation rec { pname = "libarchive"; - version = "3.6.0"; + version = "3.6.1"; src = fetchFromGitHub { owner = "libarchive"; repo = "libarchive"; rev = "v${version}"; - sha256 = "sha256-u6Zeu9yTjhx5U7KZVUkuuUsQPjWN71mE5egG4T+FGfY="; + hash = "sha256-G4wL5DDbX0FqaA4cnOlVLZ25ObN8dNsRtxyas29tpDA="; }; outputs = [ "out" "lib" "dev" ]; - nativeBuildInputs = [ pkg-config autoreconfHook ]; - buildInputs = - lib.optional stdenv.hostPlatform.isUnix sharutils - ++ [ zlib bzip2 openssl xz lzo zstd ] - ++ lib.optionals stdenv.isLinux [ e2fsprogs attr acl ] + nativeBuildInputs = [ + autoreconfHook + pkg-config + ]; + + buildInputs = [ + bzip2 + lzo + openssl + xz + zlib + zstd + ] ++ lib.optional stdenv.hostPlatform.isUnix sharutils + ++ lib.optionals stdenv.isLinux [ acl attr e2fsprogs ] ++ lib.optional xarSupport libxml2; # Without this, pkg-config-based dependencies are unhappy @@ -38,11 +60,17 @@ stdenv.mkDerivation rec { configureFlags = lib.optional (!xarSupport) "--without-xml2"; - preBuild = if stdenv.isCygwin then '' + postPatch = '' + substituteInPlace Makefile.am --replace '/bin/pwd' 'pwd' + ''; + + preBuild = lib.optionalString stdenv.isCygwin '' echo "#include <windows.h>" >> config.h - '' else null; + ''; - doCheck = false; # fails + # 484: test_write_disk_perms FAIL + # TODO: how to disable it? Should it be reported upstream? + doCheck = false; preFixup = '' sed -i $lib/lib/libarchive.la \ @@ -52,21 +80,22 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - passthru.tests = { - inherit cmake nix samba; - }; - - meta = { + meta = with lib; { + homepage = "http://libarchive.org"; description = "Multi-format archive and compression library"; longDescription = '' - This library has code for detecting and reading many archive formats and - compressions formats including (but not limited to) tar, shar, cpio, zip, and - compressed with gzip, bzip2, lzma, xz, ... + The libarchive project develops a portable, efficient C library that can + read and write streaming archives in a variety of formats. It also + includes implementations of the common tar, cpio, and zcat command-line + tools that use the libarchive library. ''; - homepage = "http://libarchive.org"; changelog = "https://github.com/libarchive/libarchive/releases/tag/v${version}"; - license = lib.licenses.bsd3; - platforms = with lib.platforms; all; - maintainers = with lib.maintainers; [ jcumming ]; + license = licenses.bsd3; + maintainers = with maintainers; [ jcumming AndersonTorres ]; + platforms = platforms.all; + }; + + passthru.tests = { + inherit cmake nix samba; }; } diff --git a/pkgs/development/libraries/libargon2/default.nix b/pkgs/development/libraries/libargon2/default.nix index 2003c8957ff..eb8e6333d41 100644 --- a/pkgs/development/libraries/libargon2/default.nix +++ b/pkgs/development/libraries/libargon2/default.nix @@ -11,7 +11,9 @@ stdenv.mkDerivation rec { sha256 = "0p4ry9dn0mi9js0byijxdyiwx74p1nr8zj7wjpd1fjgqva4sk23i"; }; - nativeBuildInputs = [ fixDarwinDylibNames ]; + nativeBuildInputs = lib.optionals stdenv.isDarwin [ + fixDarwinDylibNames + ]; patches = [ # TODO: remove when https://github.com/P-H-C/phc-winner-argon2/pull/277 is merged + released diff --git a/pkgs/development/libraries/libavif/default.nix b/pkgs/development/libraries/libavif/default.nix index 03dd9a33628..d5a2a686b89 100644 --- a/pkgs/development/libraries/libavif/default.nix +++ b/pkgs/development/libraries/libavif/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "libavif"; - version = "0.9.3"; + version = "0.10.0"; src = fetchFromGitHub { owner = "AOMediaCodec"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ME/mkaHhFeHajTbc7zhg9vtf/8XgkgSRu9I/mlQXnds="; + sha256 = "sha256-EGu2avkqQXHFX4gKWsVfVdQN99f4J7Hm86C0sAhuP1Y="; }; # reco: encode libaom slowest but best, decode dav1d fastest diff --git a/pkgs/development/libraries/libdvbcsa/default.nix b/pkgs/development/libraries/libdvbcsa/default.nix new file mode 100644 index 00000000000..3eebaafe450 --- /dev/null +++ b/pkgs/development/libraries/libdvbcsa/default.nix @@ -0,0 +1,22 @@ +{lib, stdenv, fetchurl}: + +stdenv.mkDerivation rec { + pname = "libdvbcsa"; + version = "1.1.0"; + + src = fetchurl { + url = "http://get.videolan.org/libdvbcsa/${version}/${pname}-${version}.tar.gz"; + sha256 = "4db78af5cdb2641dfb1136fe3531960a477c9e3e3b6ba19a2754d046af3f456d"; + }; + + doCheck = true; + + meta = { + description = "A free implementation of the DVB Common Scrambling Algorithm with encryption and decryption capabilities"; + homepage = "http://www.videolan.org/developers/libdvbcsa.html"; + platforms = lib.platforms.unix; + license = lib.licenses.gpl1; + maintainers = with lib.maintainers; [ melias122 ]; + }; + +} diff --git a/pkgs/development/libraries/libepoxy/default.nix b/pkgs/development/libraries/libepoxy/default.nix index c54c3c86d23..348fbfee7b8 100644 --- a/pkgs/development/libraries/libepoxy/default.nix +++ b/pkgs/development/libraries/libepoxy/default.nix @@ -19,13 +19,13 @@ let in stdenv.mkDerivation rec { pname = "libepoxy"; - version = "1.5.9"; + version = "1.5.10"; src = fetchFromGitHub { owner = "anholt"; repo = pname; rev = version; - sha256 = "sha256-8rdmC8FZUkKkEvWPJIdfrBQHiwa81vl5tmVqRdU4UIY="; + sha256 = "sha256-gZiyPOW2PeTMILcPiUTqPUGRNlMM5mI1z9563v4SgEs="; }; patches = [ ./libgl-path.patch ]; @@ -62,7 +62,6 @@ stdenv.mkDerivation rec { --replace "[ 'cgl_epoxy_api', [ 'cgl_epoxy_api.c' ] ]," "" ''; - # tests are running from version 1.5.9 doCheck = true; meta = with lib; { diff --git a/pkgs/development/libraries/libevdev/default.nix b/pkgs/development/libraries/libevdev/default.nix index cca5abef4fc..b757e516573 100644 --- a/pkgs/development/libraries/libevdev/default.nix +++ b/pkgs/development/libraries/libevdev/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libevdev"; - version = "1.12.0"; + version = "1.12.1"; src = fetchurl { url = "https://www.freedesktop.org/software/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-L3KeNIBpV5H5SC6DiL1yNAK4nw6vEYBXu96jzs7psjc="; + sha256 = "sha256-HbukG8UW08p6vA2luGLv4+qKcBj6bpuXzp05QBsiQmw="; }; nativeBuildInputs = [ python3 ]; diff --git a/pkgs/development/libraries/libgcrypt/default.nix b/pkgs/development/libraries/libgcrypt/default.nix index eb4e8e94862..56594620963 100644 --- a/pkgs/development/libraries/libgcrypt/default.nix +++ b/pkgs/development/libraries/libgcrypt/default.nix @@ -15,11 +15,11 @@ assert enableCapabilities -> stdenv.isLinux; stdenv.mkDerivation rec { pname = "libgcrypt"; - version = "1.9.4"; + version = "1.10.1"; src = fetchurl { url = "mirror://gnupg/libgcrypt/${pname}-${version}.tar.bz2"; - sha256 = "1xxabjv45zlxyryiwhmbfblsx41kl267wsb78bny6m14ly1rr17a"; + hash = "sha256-7xSuVGsAhM2EJZ9hpV4Ho4w7U6/A9Ua//O8vAbr/6d4="; }; outputs = [ "out" "dev" "info" ]; diff --git a/pkgs/development/libraries/libjson/default.nix b/pkgs/development/libraries/libjson/default.nix index 9106c197471..0a1a631a6b9 100644 --- a/pkgs/development/libraries/libjson/default.nix +++ b/pkgs/development/libraries/libjson/default.nix @@ -10,6 +10,7 @@ stdenv.mkDerivation rec { patches = [ ./install-fix.patch ]; nativeBuildInputs = [ unzip ]; makeFlags = [ "prefix=$(out)" ]; + NIX_CFLAGS_COMPILE = [ "-std=c++11" ]; preInstall = "mkdir -p $out/lib"; meta = with lib; { diff --git a/pkgs/development/libraries/liblastfm/default.nix b/pkgs/development/libraries/liblastfm/default.nix index 0f0fec46a27..68658d20ba6 100644 --- a/pkgs/development/libraries/liblastfm/default.nix +++ b/pkgs/development/libraries/liblastfm/default.nix @@ -23,6 +23,11 @@ stdenv.mkDerivation rec { buildInputs = [ fftwSinglePrec libsamplerate qtbase ] ++ lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.SystemConfiguration; + NIX_CFLAGS_COMPILE = + lib.optionals (stdenv.cc.isGNU && lib.versionAtLeast stdenv.cc.version "11") [ + "-std=c++11" + ]; + dontWrapQtApps = true; meta = with lib; { diff --git a/pkgs/development/libraries/libmnl/default.nix b/pkgs/development/libraries/libmnl/default.nix index a8ec4c5f3b9..9a6f6a1d14d 100644 --- a/pkgs/development/libraries/libmnl/default.nix +++ b/pkgs/development/libraries/libmnl/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libmnl"; - version = "1.0.4"; + version = "1.0.5"; src = fetchurl { url = "https://netfilter.org/projects/libmnl/files/${pname}-${version}.tar.bz2"; - sha256 = "108zampspaalv44zn0ar9h386dlfixpd149bnxa5hsi8kxlqj7qp"; + sha256 = "09851ns07399rbz0y8slrlmnw3fn1nakr8d37pxjn5gkks8rnjr7"; }; meta = { diff --git a/pkgs/development/libraries/libnfnetlink/Use-stdlib-uint-instead-of-u_int.patch b/pkgs/development/libraries/libnfnetlink/Use-stdlib-uint-instead-of-u_int.patch deleted file mode 100644 index 074bef42b97..00000000000 --- a/pkgs/development/libraries/libnfnetlink/Use-stdlib-uint-instead-of-u_int.patch +++ /dev/null @@ -1,499 +0,0 @@ -From patchwork Fri Apr 3 22:04:46 2015 -Content-Type: text/plain; charset="utf-8" -MIME-Version: 1.0 -Content-Transfer-Encoding: 7bit -Subject: Use stdlib uint* instead of u_int* -From: Nathan McSween <nwmcsween@gmail.com> -X-Patchwork-Id: 458131 -X-Patchwork-Delegate: pablo@netfilter.org -Message-Id: <1428098686-17843-1-git-send-email-nwmcsween@gmail.com> -To: netfilter-devel@vger.kernel.org -Cc: Nathan McSween <nwmcsween@gmail.com> -Date: Fri, 3 Apr 2015 22:04:46 +0000 - -Signed-off-by: Nathan McSween <nwmcsween@gmail.com> ---- - include/libnfnetlink/libnfnetlink.h | 25 +++++----- - include/libnfnetlink/linux_nfnetlink.h | 11 +++-- - include/libnfnetlink/linux_nfnetlink_compat.h | 6 ++- - src/iftable.c | 9 ++-- - src/iftable.h | 6 ++- - src/libnfnetlink.c | 71 ++++++++++++++------------- - src/rtnl.c | 5 +- - src/rtnl.h | 3 +- - 8 files changed, 73 insertions(+), 63 deletions(-) - -diff --git a/include/libnfnetlink/libnfnetlink.h b/include/libnfnetlink/libnfnetlink.h -index 1d8c49d..cd0be3d 100644 ---- a/include/libnfnetlink/libnfnetlink.h -+++ b/include/libnfnetlink/libnfnetlink.h -@@ -15,6 +15,7 @@ - #define aligned_u64 unsigned long long __attribute__((aligned(8))) - #endif - -+#include <stdint.h> - #include <sys/socket.h> /* for sa_family_t */ - #include <linux/netlink.h> - #include <libnfnetlink/linux_nfnetlink.h> -@@ -55,7 +56,7 @@ struct nfnlhdr { - struct nfnl_callback { - int (*call)(struct nlmsghdr *nlh, struct nfattr *nfa[], void *data); - void *data; -- u_int16_t attr_count; -+ uint16_t attr_count; - }; - - struct nfnl_handle; -@@ -69,7 +70,7 @@ extern struct nfnl_handle *nfnl_open(void); - extern int nfnl_close(struct nfnl_handle *); - - extern struct nfnl_subsys_handle *nfnl_subsys_open(struct nfnl_handle *, -- u_int8_t, u_int8_t, -+ uint8_t, uint8_t, - unsigned int); - extern void nfnl_subsys_close(struct nfnl_subsys_handle *); - -@@ -88,8 +89,8 @@ extern int nfnl_sendiov(const struct nfnl_handle *nfnlh, - const struct iovec *iov, unsigned int num, - unsigned int flags); - extern void nfnl_fill_hdr(struct nfnl_subsys_handle *, struct nlmsghdr *, -- unsigned int, u_int8_t, u_int16_t, u_int16_t, -- u_int16_t); -+ unsigned int, uint8_t, uint16_t, uint16_t, -+ uint16_t); - extern __attribute__((deprecated)) int - nfnl_talk(struct nfnl_handle *, struct nlmsghdr *, pid_t, - unsigned, struct nlmsghdr *, -@@ -103,8 +104,8 @@ nfnl_listen(struct nfnl_handle *, - /* receiving */ - extern ssize_t nfnl_recv(const struct nfnl_handle *h, unsigned char *buf, size_t len); - extern int nfnl_callback_register(struct nfnl_subsys_handle *, -- u_int8_t type, struct nfnl_callback *cb); --extern int nfnl_callback_unregister(struct nfnl_subsys_handle *, u_int8_t type); -+ uint8_t type, struct nfnl_callback *cb); -+extern int nfnl_callback_unregister(struct nfnl_subsys_handle *, uint8_t type); - extern int nfnl_handle_packet(struct nfnl_handle *, char *buf, int len); - - /* parsing */ -@@ -180,12 +181,12 @@ extern int nfnl_query(struct nfnl_handle *h, struct nlmsghdr *nlh); - - /* nfnl attribute handling functions */ - extern int nfnl_addattr_l(struct nlmsghdr *, int, int, const void *, int); --extern int nfnl_addattr8(struct nlmsghdr *, int, int, u_int8_t); --extern int nfnl_addattr16(struct nlmsghdr *, int, int, u_int16_t); --extern int nfnl_addattr32(struct nlmsghdr *, int, int, u_int32_t); -+extern int nfnl_addattr8(struct nlmsghdr *, int, int, uint8_t); -+extern int nfnl_addattr16(struct nlmsghdr *, int, int, uint16_t); -+extern int nfnl_addattr32(struct nlmsghdr *, int, int, uint32_t); - extern int nfnl_nfa_addattr_l(struct nfattr *, int, int, const void *, int); --extern int nfnl_nfa_addattr16(struct nfattr *, int, int, u_int16_t); --extern int nfnl_nfa_addattr32(struct nfattr *, int, int, u_int32_t); -+extern int nfnl_nfa_addattr16(struct nfattr *, int, int, uint16_t); -+extern int nfnl_nfa_addattr32(struct nfattr *, int, int, uint32_t); - extern int nfnl_parse_attr(struct nfattr **, int, struct nfattr *, int); - #define nfnl_parse_nested(tb, max, nfa) \ - nfnl_parse_attr((tb), (max), NFA_DATA((nfa)), NFA_PAYLOAD((nfa))) -@@ -197,7 +198,7 @@ extern int nfnl_parse_attr(struct nfattr **, int, struct nfattr *, int); - ({ (tail)->nfa_len = (void *) NLMSG_TAIL(nlh) - (void *) tail; }) - - extern void nfnl_build_nfa_iovec(struct iovec *iov, struct nfattr *nfa, -- u_int16_t type, u_int32_t len, -+ uint16_t type, uint32_t len, - unsigned char *val); - extern unsigned int nfnl_rcvbufsiz(const struct nfnl_handle *h, - unsigned int size); -diff --git a/include/libnfnetlink/linux_nfnetlink.h b/include/libnfnetlink/linux_nfnetlink.h -index 76a8550..7b843c6 100644 ---- a/include/libnfnetlink/linux_nfnetlink.h -+++ b/include/libnfnetlink/linux_nfnetlink.h -@@ -1,5 +1,6 @@ - #ifndef _NFNETLINK_H - #define _NFNETLINK_H -+#include <stdint.h> - #include <linux/types.h> - #include <libnfnetlink/linux_nfnetlink_compat.h> - -@@ -25,9 +26,9 @@ enum nfnetlink_groups { - /* General form of address family dependent message. - */ - struct nfgenmsg { -- u_int8_t nfgen_family; /* AF_xxx */ -- u_int8_t version; /* nfnetlink version */ -- u_int16_t res_id; /* resource id */ -+ uint8_t nfgen_family; /* AF_xxx */ -+ uint8_t version; /* nfnetlink version */ -+ uint16_t res_id; /* resource id */ - }; - - #define NFNETLINK_V0 0 -@@ -59,7 +60,7 @@ struct nfnl_callback - int (*call)(struct sock *nl, struct sk_buff *skb, - struct nlmsghdr *nlh, struct nlattr *cda[]); - const struct nla_policy *policy; /* netlink attribute policy */ -- const u_int16_t attr_count; /* number of nlattr's */ -+ const uint16_t attr_count; /* number of nlattr's */ - }; - - struct nfnetlink_subsystem -@@ -76,7 +77,7 @@ extern int nfnetlink_subsys_unregister(const struct nfnetlink_subsystem *n); - extern int nfnetlink_has_listeners(unsigned int group); - extern int nfnetlink_send(struct sk_buff *skb, u32 pid, unsigned group, - int echo); --extern int nfnetlink_unicast(struct sk_buff *skb, u_int32_t pid, int flags); -+extern int nfnetlink_unicast(struct sk_buff *skb, uint32_t pid, int flags); - - #define MODULE_ALIAS_NFNL_SUBSYS(subsys) \ - MODULE_ALIAS("nfnetlink-subsys-" __stringify(subsys)) -diff --git a/include/libnfnetlink/linux_nfnetlink_compat.h b/include/libnfnetlink/linux_nfnetlink_compat.h -index e145176..cd094fc 100644 ---- a/include/libnfnetlink/linux_nfnetlink_compat.h -+++ b/include/libnfnetlink/linux_nfnetlink_compat.h -@@ -3,6 +3,8 @@ - #ifndef __KERNEL__ - /* Old nfnetlink macros for userspace */ - -+#include <stdint.h> -+ - /* nfnetlink groups: Up to 32 maximum */ - #define NF_NETLINK_CONNTRACK_NEW 0x00000001 - #define NF_NETLINK_CONNTRACK_UPDATE 0x00000002 -@@ -20,8 +22,8 @@ - - struct nfattr - { -- u_int16_t nfa_len; -- u_int16_t nfa_type; /* we use 15 bits for the type, and the highest -+ uint16_t nfa_len; -+ uint16_t nfa_type; /* we use 15 bits for the type, and the highest - * bit to indicate whether the payload is nested */ - }; - -diff --git a/src/iftable.c b/src/iftable.c -index 5976ed8..3411c4c 100644 ---- a/src/iftable.c -+++ b/src/iftable.c -@@ -9,6 +9,7 @@ - /* IFINDEX handling */ - - #include <unistd.h> -+#include <stdint.h> - #include <stdlib.h> - #include <stdio.h> - #include <string.h> -@@ -27,10 +28,10 @@ - struct ifindex_node { - struct list_head head; - -- u_int32_t index; -- u_int32_t type; -- u_int32_t alen; -- u_int32_t flags; -+ uint32_t index; -+ uint32_t type; -+ uint32_t alen; -+ uint32_t flags; - char addr[8]; - char name[16]; - }; -diff --git a/src/iftable.h b/src/iftable.h -index 8df7f24..0cc5335 100644 ---- a/src/iftable.h -+++ b/src/iftable.h -@@ -1,8 +1,10 @@ - #ifndef _IFTABLE_H - #define _IFTABLE_H - --int iftable_delete(u_int32_t dst, u_int32_t mask, u_int32_t gw, u_int32_t oif); --int iftable_insert(u_int32_t dst, u_int32_t mask, u_int32_t gw, u_int32_t oif); -+#include <stdint.h> -+ -+int iftable_delete(uint32_t dst, uint32_t mask, uint32_t gw, uint32_t oif); -+int iftable_insert(uint32_t dst, uint32_t mask, uint32_t gw, uint32_t oif); - - int iftable_init(void); - void iftable_fini(void); -diff --git a/src/libnfnetlink.c b/src/libnfnetlink.c -index 398b7d7..b8958dc 100644 ---- a/src/libnfnetlink.c -+++ b/src/libnfnetlink.c -@@ -36,6 +36,7 @@ - * minor cleanups - */ - -+#include <stdint.h> - #include <stdlib.h> - #include <stdio.h> - #include <unistd.h> -@@ -72,9 +73,9 @@ - - struct nfnl_subsys_handle { - struct nfnl_handle *nfnlh; -- u_int32_t subscriptions; -- u_int8_t subsys_id; -- u_int8_t cb_count; -+ uint32_t subscriptions; -+ uint8_t subsys_id; -+ uint8_t cb_count; - struct nfnl_callback *cb; /* array of callbacks */ - }; - -@@ -86,11 +87,11 @@ struct nfnl_handle { - int fd; - struct sockaddr_nl local; - struct sockaddr_nl peer; -- u_int32_t subscriptions; -- u_int32_t seq; -- u_int32_t dump; -- u_int32_t rcv_buffer_size; /* for nfnl_catch */ -- u_int32_t flags; -+ uint32_t subscriptions; -+ uint32_t seq; -+ uint32_t dump; -+ uint32_t rcv_buffer_size; /* for nfnl_catch */ -+ uint32_t flags; - struct nlmsghdr *last_nlhdr; - struct nfnl_subsys_handle subsys[NFNL_MAX_SUBSYS+1]; - }; -@@ -145,7 +146,7 @@ unsigned int nfnl_portid(const struct nfnl_handle *h) - static int recalc_rebind_subscriptions(struct nfnl_handle *nfnlh) - { - int i, err; -- u_int32_t new_subscriptions = nfnlh->subscriptions; -+ uint32_t new_subscriptions = nfnlh->subscriptions; - - for (i = 0; i < NFNL_MAX_SUBSYS; i++) - new_subscriptions |= nfnlh->subsys[i].subscriptions; -@@ -273,8 +274,8 @@ void nfnl_set_rcv_buffer_size(struct nfnl_handle *h, unsigned int size) - * a valid address that points to a nfnl_subsys_handle structure is returned. - */ - struct nfnl_subsys_handle * --nfnl_subsys_open(struct nfnl_handle *nfnlh, u_int8_t subsys_id, -- u_int8_t cb_count, u_int32_t subscriptions) -+nfnl_subsys_open(struct nfnl_handle *nfnlh, uint8_t subsys_id, -+ uint8_t cb_count, uint32_t subscriptions) - { - struct nfnl_subsys_handle *ssh; - -@@ -435,10 +436,10 @@ int nfnl_sendiov(const struct nfnl_handle *nfnlh, const struct iovec *iov, - */ - void nfnl_fill_hdr(struct nfnl_subsys_handle *ssh, - struct nlmsghdr *nlh, unsigned int len, -- u_int8_t family, -- u_int16_t res_id, -- u_int16_t msg_type, -- u_int16_t msg_flags) -+ uint8_t family, -+ uint16_t res_id, -+ uint16_t msg_type, -+ uint16_t msg_flags) - { - assert(ssh); - assert(nlh); -@@ -849,14 +850,14 @@ int nfnl_nfa_addattr_l(struct nfattr *nfa, int maxlen, int type, - } - - /** -- * nfnl_addattr8 - Add u_int8_t attribute to nlmsghdr -+ * nfnl_addattr8 - Add uint8_t attribute to nlmsghdr - * - * @n: netlink message header to which attribute is to be added - * @maxlen: maximum length of netlink message header - * @type: type of new attribute - * @data: content of new attribute - */ --int nfnl_addattr8(struct nlmsghdr *n, int maxlen, int type, u_int8_t data) -+int nfnl_addattr8(struct nlmsghdr *n, int maxlen, int type, uint8_t data) - { - assert(n); - assert(maxlen > 0); -@@ -866,7 +867,7 @@ int nfnl_addattr8(struct nlmsghdr *n, int maxlen, int type, u_int8_t data) - } - - /** -- * nfnl_nfa_addattr16 - Add u_int16_t attribute to struct nfattr -+ * nfnl_nfa_addattr16 - Add uint16_t attribute to struct nfattr - * - * @nfa: struct nfattr - * @maxlen: maximal length of nfattr buffer -@@ -875,7 +876,7 @@ int nfnl_addattr8(struct nlmsghdr *n, int maxlen, int type, u_int8_t data) - * - */ - int nfnl_nfa_addattr16(struct nfattr *nfa, int maxlen, int type, -- u_int16_t data) -+ uint16_t data) - { - assert(nfa); - assert(maxlen > 0); -@@ -885,7 +886,7 @@ int nfnl_nfa_addattr16(struct nfattr *nfa, int maxlen, int type, - } - - /** -- * nfnl_addattr16 - Add u_int16_t attribute to nlmsghdr -+ * nfnl_addattr16 - Add uint16_t attribute to nlmsghdr - * - * @n: netlink message header to which attribute is to be added - * @maxlen: maximum length of netlink message header -@@ -894,7 +895,7 @@ int nfnl_nfa_addattr16(struct nfattr *nfa, int maxlen, int type, - * - */ - int nfnl_addattr16(struct nlmsghdr *n, int maxlen, int type, -- u_int16_t data) -+ uint16_t data) - { - assert(n); - assert(maxlen > 0); -@@ -904,7 +905,7 @@ int nfnl_addattr16(struct nlmsghdr *n, int maxlen, int type, - } - - /** -- * nfnl_nfa_addattr32 - Add u_int32_t attribute to struct nfattr -+ * nfnl_nfa_addattr32 - Add uint32_t attribute to struct nfattr - * - * @nfa: struct nfattr - * @maxlen: maximal length of nfattr buffer -@@ -913,7 +914,7 @@ int nfnl_addattr16(struct nlmsghdr *n, int maxlen, int type, - * - */ - int nfnl_nfa_addattr32(struct nfattr *nfa, int maxlen, int type, -- u_int32_t data) -+ uint32_t data) - { - assert(nfa); - assert(maxlen > 0); -@@ -923,7 +924,7 @@ int nfnl_nfa_addattr32(struct nfattr *nfa, int maxlen, int type, - } - - /** -- * nfnl_addattr32 - Add u_int32_t attribute to nlmsghdr -+ * nfnl_addattr32 - Add uint32_t attribute to nlmsghdr - * - * @n: netlink message header to which attribute is to be added - * @maxlen: maximum length of netlink message header -@@ -932,7 +933,7 @@ int nfnl_nfa_addattr32(struct nfattr *nfa, int maxlen, int type, - * - */ - int nfnl_addattr32(struct nlmsghdr *n, int maxlen, int type, -- u_int32_t data) -+ uint32_t data) - { - assert(n); - assert(maxlen > 0); -@@ -980,7 +981,7 @@ int nfnl_parse_attr(struct nfattr *tb[], int max, struct nfattr *nfa, int len) - * - */ - void nfnl_build_nfa_iovec(struct iovec *iov, struct nfattr *nfa, -- u_int16_t type, u_int32_t len, unsigned char *val) -+ uint16_t type, uint32_t len, unsigned char *val) - { - assert(iov); - assert(nfa); -@@ -1115,7 +1116,7 @@ struct nlmsghdr *nfnl_get_msg_next(struct nfnl_handle *h, - * appropiately. - */ - int nfnl_callback_register(struct nfnl_subsys_handle *ssh, -- u_int8_t type, struct nfnl_callback *cb) -+ uint8_t type, struct nfnl_callback *cb) - { - assert(ssh); - assert(cb); -@@ -1138,7 +1139,7 @@ int nfnl_callback_register(struct nfnl_subsys_handle *ssh, - * On sucess, 0 is returned. On error, -1 is returned and errno is - * set appropiately. - */ --int nfnl_callback_unregister(struct nfnl_subsys_handle *ssh, u_int8_t type) -+int nfnl_callback_unregister(struct nfnl_subsys_handle *ssh, uint8_t type) - { - assert(ssh); - -@@ -1161,8 +1162,8 @@ int nfnl_check_attributes(const struct nfnl_handle *h, - assert(nfa); - - int min_len; -- u_int8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -- u_int8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); -+ uint8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -+ uint8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); - const struct nfnl_subsys_handle *ssh; - struct nfnl_callback *cb; - -@@ -1212,8 +1213,8 @@ static int __nfnl_handle_msg(struct nfnl_handle *h, struct nlmsghdr *nlh, - int len) - { - struct nfnl_subsys_handle *ssh; -- u_int8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -- u_int8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); -+ uint8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -+ uint8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); - int err = 0; - - if (subsys_id > NFNL_MAX_SUBSYS) -@@ -1243,7 +1244,7 @@ int nfnl_handle_packet(struct nfnl_handle *h, char *buf, int len) - { - - while (len >= NLMSG_SPACE(0)) { -- u_int32_t rlen; -+ uint32_t rlen; - struct nlmsghdr *nlh = (struct nlmsghdr *)buf; - - if (nlh->nlmsg_len < sizeof(struct nlmsghdr) -@@ -1285,8 +1286,8 @@ static int nfnl_is_error(struct nfnl_handle *h, struct nlmsghdr *nlh) - static int nfnl_step(struct nfnl_handle *h, struct nlmsghdr *nlh) - { - struct nfnl_subsys_handle *ssh; -- u_int8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -- u_int8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); -+ uint8_t type = NFNL_MSG_TYPE(nlh->nlmsg_type); -+ uint8_t subsys_id = NFNL_SUBSYS_ID(nlh->nlmsg_type); - - /* Is this an error message? */ - if (nfnl_is_error(h, nlh)) { -diff --git a/src/rtnl.c b/src/rtnl.c -index 7b4ac7d..34802fe 100644 ---- a/src/rtnl.c -+++ b/src/rtnl.c -@@ -11,6 +11,7 @@ - /* rtnetlink - routing table netlink interface */ - - #include <unistd.h> -+#include <stdint.h> - #include <stdlib.h> - #include <string.h> - #include <errno.h> -@@ -30,7 +31,7 @@ - #define rtnl_log(x, ...) - - static inline struct rtnl_handler * --find_handler(struct rtnl_handle *rtnl_handle, u_int16_t type) -+find_handler(struct rtnl_handle *rtnl_handle, uint16_t type) - { - struct rtnl_handler *h; - for (h = rtnl_handle->handlers; h; h = h->next) { -@@ -41,7 +42,7 @@ find_handler(struct rtnl_handle *rtnl_handle, u_int16_t type) - } - - static int call_handler(struct rtnl_handle *rtnl_handle, -- u_int16_t type, -+ uint16_t type, - struct nlmsghdr *hdr) - { - struct rtnl_handler *h = find_handler(rtnl_handle, type); -diff --git a/src/rtnl.h b/src/rtnl.h -index 0c403dc..9858ae5 100644 ---- a/src/rtnl.h -+++ b/src/rtnl.h -@@ -1,13 +1,14 @@ - #ifndef _RTNL_H - #define _RTNL_H - -+#include <stdint.h> - #include <linux/types.h> - #include <linux/rtnetlink.h> - - struct rtnl_handler { - struct rtnl_handler *next; - -- u_int16_t nlmsg_type; -+ uint16_t nlmsg_type; - int (*handlefn)(struct nlmsghdr *h, void *arg); - void *arg; - }; diff --git a/pkgs/development/libraries/libnfnetlink/default.nix b/pkgs/development/libraries/libnfnetlink/default.nix index b22722d3439..3b6b804a8dc 100644 --- a/pkgs/development/libraries/libnfnetlink/default.nix +++ b/pkgs/development/libraries/libnfnetlink/default.nix @@ -2,17 +2,13 @@ stdenv.mkDerivation rec { pname = "libnfnetlink"; - version = "1.0.1"; + version = "1.0.2"; src = fetchurl { url = "https://www.netfilter.org/projects/libnfnetlink/files/libnfnetlink-${version}.tar.bz2"; - sha256 = "06mm2x4b01k3m7wnrxblk9j0mybyr4pfz28ml7944xhjx6fy2w7j"; + sha256 = "0xn3rcrzxr6g82kfxzs9bqn2zvl2kf2yda30drwb9vr6sk1wfr5h"; }; - patches = [ - ./Use-stdlib-uint-instead-of-u_int.patch - ]; - meta = { description = "Low-level library for netfilter related kernel/userspace communication"; longDescription = '' diff --git a/pkgs/development/libraries/libotr/default.nix b/pkgs/development/libraries/libotr/default.nix index bd8a521544c..a9c1d2008af 100644 --- a/pkgs/development/libraries/libotr/default.nix +++ b/pkgs/development/libraries/libotr/default.nix @@ -9,6 +9,8 @@ stdenv.mkDerivation rec { sha256 = "1x8rliydhbibmzwdbyr7pd7n87m2jmxnqkpvaalnf4154hj1hfwb"; }; + patches = [ ./fix-regtest-client.patch ]; + outputs = [ "bin" "out" "dev" ]; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/libotr/fix-regtest-client.patch b/pkgs/development/libraries/libotr/fix-regtest-client.patch new file mode 100644 index 00000000000..bfd0007b961 --- /dev/null +++ b/pkgs/development/libraries/libotr/fix-regtest-client.patch @@ -0,0 +1,11 @@ +diff -Nur a/tests/regression/client/client.c b/tests/regression/client/client.c +--- a/tests/regression/client/client.c 2015-12-25 17:39:45.000000000 +0000 ++++ b/tests/regression/client/client.c 2022-03-29 19:33:18.646398117 +0100 +@@ -27,6 +27,7 @@ + #include <syscall.h> + #include <sys/epoll.h> + #include <sys/types.h> ++#include <sys/socket.h> + #include <sys/un.h> + #include <unistd.h> + diff --git a/pkgs/development/libraries/libsoup/3.x.nix b/pkgs/development/libraries/libsoup/3.x.nix index 4791e49ae3f..c4ab1094cce 100644 --- a/pkgs/development/libraries/libsoup/3.x.nix +++ b/pkgs/development/libraries/libsoup/3.x.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "libsoup"; - version = "3.0.5"; + version = "3.0.6"; outputs = [ "out" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-9dFD22gws4Je3CocREnWOSc7C/oBeklwhxli2byiIUU="; + sha256 = "sha256-tF1Z+EC5rPm7Rf1FhU4+9nL1fjq5V0AcOtjXUCrCPaY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libunistring/default.nix b/pkgs/development/libraries/libunistring/default.nix index f7a77832c18..01b302abd68 100644 --- a/pkgs/development/libraries/libunistring/default.nix +++ b/pkgs/development/libraries/libunistring/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "libunistring"; - version = "0.9.10"; + version = "1.0"; src = fetchurl { url = "mirror://gnu/libunistring/${pname}-${version}.tar.gz"; - sha256 = "02v17za10mxnj095x4pvm80jxyqwk93kailfc2j8xa1r6crmnbm8"; + sha256 = "sha256-PAGEwOSS18IIzjHSXdHSxY8MPtbLvgMsWySM3a0xhUQ="; }; outputs = [ "out" "dev" "info" "doc" ]; diff --git a/pkgs/development/libraries/libunwind/default.nix b/pkgs/development/libraries/libunwind/default.nix index 4bce1341c7d..bda9001f913 100644 --- a/pkgs/development/libraries/libunwind/default.nix +++ b/pkgs/development/libraries/libunwind/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, autoreconfHook, xz, buildPackages }: +{ stdenv, lib, fetchurl, fetchpatch, autoreconfHook, xz, buildPackages }: stdenv.mkDerivation rec { pname = "libunwind"; @@ -9,6 +9,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-SmrsZmmR+0XQiJxErt6K1usQgHHDVU/N/2cfnJR5SXY="; }; + patches = [ + # Fix for aarch64 and non-4K pages. Remove once upgraded past 1.6.2. + (fetchpatch { + url = "https://github.com/libunwind/libunwind/commit/e85b65cec757ef589f28957d0c6c21c498a03bdf.patch"; + sha256 = "1lnlygvhqrdrjgw303pg2k2k4ms4gaghpjsgmhk47q83vy1yjwfg"; + }) + ]; + postPatch = if stdenv.cc.isClang then '' substituteInPlace configure.ac --replace "-lgcc_s" "" '' else lib.optionalString stdenv.hostPlatform.isMusl '' diff --git a/pkgs/development/libraries/libwacom/default.nix b/pkgs/development/libraries/libwacom/default.nix index 7ccc0d2a199..a46ccdf7850 100644 --- a/pkgs/development/libraries/libwacom/default.nix +++ b/pkgs/development/libraries/libwacom/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { pname = "libwacom"; - version = "2.1.0"; + version = "2.2.0"; outputs = [ "out" "dev" ]; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { owner = "linuxwacom"; repo = "libwacom"; rev = "libwacom-${version}"; - sha256 = "sha256-yqOhlbOgDIAsxgQWoLKj7WpwJXvxeuW8yCvuKTtE7h0="; + sha256 = "sha256-SqKXxmyP31kb6ikMQRqPaKNIpeLcMLLEGInCGIx5jWM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libxcrypt/default.nix b/pkgs/development/libraries/libxcrypt/default.nix index 4df5bde2287..8bba9945abf 100644 --- a/pkgs/development/libraries/libxcrypt/default.nix +++ b/pkgs/development/libraries/libxcrypt/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libxcrypt"; - version = "4.4.18"; + version = "4.4.28"; src = fetchFromGitHub { owner = "besser82"; repo = "libxcrypt"; rev = "v${version}"; - sha256 = "4015bf1b3a2aab31da5a544424be36c1a0f0ffc1eaa219c0e7b048e4cdcbbfe1"; + sha256 = "sha256-Ohf+RCOXnoCxAFnXXV9e2TCqpfZziQl+FGJTGDSQTF0="; }; preConfigure = '' diff --git a/pkgs/development/libraries/log4shib/default.nix b/pkgs/development/libraries/log4shib/default.nix index 0602b4c3b52..1c9a6a1e2ac 100644 --- a/pkgs/development/libraries/log4shib/default.nix +++ b/pkgs/development/libraries/log4shib/default.nix @@ -12,6 +12,8 @@ stdenv.mkDerivation { nativeBuildInputs = [ autoreconfHook ]; + NIX_CFLAGS_COMPILE = [ "-std=c++11" ]; + meta = with lib; { description = "A forked version of log4cpp that has been created for the Shibboleth project"; maintainers = [ maintainers.jammerful ]; diff --git a/pkgs/development/libraries/mapbox-gl-native/default.nix b/pkgs/development/libraries/mapbox-gl-native/default.nix index c71bf17a3c7..47b9ba63fc2 100644 --- a/pkgs/development/libraries/mapbox-gl-native/default.nix +++ b/pkgs/development/libraries/mapbox-gl-native/default.nix @@ -30,6 +30,11 @@ mkDerivation rec { url = "https://git.alpinelinux.org/aports/plain/testing/mapbox-gl-native/0002-skip-license-check.patch?id=6751a93dca26b0b3ceec9eb151272253a2fe497e"; sha256 = "1yybwzxbvn0lqb1br1fyg7763p2h117s6mkmywkl4l7qg9daa7ba"; }) + (fetchpatch { + name = "fix-compilation.patch"; + url = "https://aur.archlinux.org/cgit/aur.git/plain/fix-compilation.patch?h=mapbox-gl-native"; + hash = "sha256-KgJHyoIdKdnQo+gedns3C+mEXlaTH/UtyQsaYR1T3iI="; + }) ]; postPatch = '' diff --git a/pkgs/development/libraries/mediastreamer/default.nix b/pkgs/development/libraries/mediastreamer/default.nix index 5d9cc98b1a9..aa584deddb8 100644 --- a/pkgs/development/libraries/mediastreamer/default.nix +++ b/pkgs/development/libraries/mediastreamer/default.nix @@ -92,12 +92,14 @@ stdenv.mkDerivation rec { # Do not build static libraries cmakeFlags = [ "-DENABLE_STATIC=NO" ]; - NIX_CFLAGS_COMPILE = toString [ + NIX_CFLAGS_COMPILE = [ "-DGIT_VERSION=\"v${version}\"" "-Wno-error=deprecated-declarations" "-Wno-error=cast-function-type" "-Wno-error=stringop-truncation" "-Wno-error=stringop-overflow" + ] ++ lib.optionals (stdenv.cc.isGNU && lib.versionAtLeast stdenv.cc.version "11") [ + "-Wno-error=stringop-overread" ]; NIX_LDFLAGS = "-lXext"; diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index a8711a3eff5..f5dbb30d65f 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -6,7 +6,6 @@ , libelf, libvdpau , libglvnd, libunwind , galliumDrivers ? ["auto"] -, driDrivers ? ["auto"] , vulkanDrivers ? ["auto"] , eglPlatforms ? [ "x11" ] ++ lib.optionals stdenv.isLinux [ "wayland" ] , OpenGL, Xplugin @@ -34,7 +33,7 @@ with lib; let # Release calendar: https://www.mesa3d.org/release-calendar.html # Release frequency: https://www.mesa3d.org/releasing.html#schedule - version = "21.3.8"; + version = "22.0.1"; branch = versions.major version; self = stdenv.mkDerivation { @@ -48,7 +47,7 @@ self = stdenv.mkDerivation { "ftp://ftp.freedesktop.org/pub/mesa/${version}/mesa-${version}.tar.xz" "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz" ]; - sha256 = "19wx5plk6z0hhi0zdzxjx8ynl3lhlc5mbd8vhwqyk92kvhxjf3g7"; + sha256 = "0vs20kyq9sxh52hd242yf7nz2wzw6di8jw7s19pb6q25qn19cpy0"; }; # TODO: @@ -114,7 +113,6 @@ self = stdenv.mkDerivation { "-Ddri-search-path=${libglvnd.driverLink}/lib/dri" "-Dplatforms=${concatStringsSep "," eglPlatforms}" - "-Ddri-drivers=${concatStringsSep "," driDrivers}" "-Dgallium-drivers=${concatStringsSep "," galliumDrivers}" "-Dvulkan-drivers=${concatStringsSep "," vulkanDrivers}" diff --git a/pkgs/development/libraries/mpich/default.nix b/pkgs/development/libraries/mpich/default.nix index ae73a7991eb..60e543c4629 100644 --- a/pkgs/development/libraries/mpich/default.nix +++ b/pkgs/development/libraries/mpich/default.nix @@ -22,6 +22,9 @@ stdenv.mkDerivation rec { "--enable-shared" "--enable-sharedlib" "--with-pm=${withPm}" + ] ++ lib.optionals (lib.versionAtLeast gfortran.version "10") [ + "FFLAGS=-fallow-argument-mismatch" # https://github.com/pmodels/mpich/issues/4300 + "FCFLAGS=-fallow-argument-mismatch" ]; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/mvapich/default.nix b/pkgs/development/libraries/mvapich/default.nix index c496927ebca..0f358c27962 100644 --- a/pkgs/development/libraries/mvapich/default.nix +++ b/pkgs/development/libraries/mvapich/default.nix @@ -40,6 +40,7 @@ stdenv.mkDerivation rec { "--enable-threads=multiple" "--enable-hybrid" "--enable-shared" + "FFLAGS=-fallow-argument-mismatch" # fix build with gfortran 10 ] ++ optional useSlurm "--with-pm=slurm" ++ optional (network == "ethernet") "--with-device=ch3:sock" ++ optionals (network == "infiniband") [ "--with-device=ch3:mrail" "--with-rdma=gen2" ] diff --git a/pkgs/development/libraries/netcdf-fortran/default.nix b/pkgs/development/libraries/netcdf-fortran/default.nix index 40f22b0cabe..d64d631f94c 100644 --- a/pkgs/development/libraries/netcdf-fortran/default.nix +++ b/pkgs/development/libraries/netcdf-fortran/default.nix @@ -15,6 +15,9 @@ stdenv.mkDerivation rec { ++ lib.optional stdenv.isDarwin CoreFoundation; doCheck = true; + FFLAGS = [ "-std=legacy" ]; + FCFLAGS = [ "-std=legacy" ]; + meta = with lib; { description = "Fortran API to manipulate netcdf files"; homepage = "https://www.unidata.ucar.edu/software/netcdf/"; diff --git a/pkgs/development/libraries/netcdf/default.nix b/pkgs/development/libraries/netcdf/default.nix index fe51d4b524a..da2ad9c3f9b 100644 --- a/pkgs/development/libraries/netcdf/default.nix +++ b/pkgs/development/libraries/netcdf/default.nix @@ -1,6 +1,5 @@ { lib, stdenv -, fetchpatch -, fetchurl +, fetchurl, unzip , hdf5 , m4 , curl # for DAP @@ -11,25 +10,13 @@ let inherit (hdf5) mpiSupport mpi; in stdenv.mkDerivation rec { pname = "netcdf" + lib.optionalString mpiSupport "-mpi"; - version = "4.8.0"; # Remove patch mentioned below on upgrade + version = "4.8.1"; src = fetchurl { - url = "https://www.unidata.ucar.edu/downloads/netcdf/ftp/netcdf-c-${version}.tar.gz"; - sha256 = "1mfn8qi4k0b8pyar3wa8v0npj69c7rhgfdlppdwmq5jqk88kb5k7"; + url = "https://downloads.unidata.ucar.edu/netcdf-c/${version}/netcdf-c-${version}.tar.gz"; + sha256 = "1cbjwjmp9691clacw5v88hmpz46ngxs3bfpkf2xy1j7cvlkc72l0"; }; - patches = [ - # Fixes: - # *** Checking vlen of compound file...Sorry! Unexpected result, tst_h_atts3.c, line: 289 - # FAIL tst_h_atts3 (exit status: 2) - # TODO: Remove with next netcdf release (see https://github.com/Unidata/netcdf-c/pull/1980) - (fetchpatch { - name = "netcdf-Fix-tst_h_atts3-for-hdf5-1.12.patch"; - url = "https://github.com/Unidata/netcdf-c/commit/9fc8ae62a8564e095ff17f4612874581db0e4db5.patch"; - sha256 = "128kxz5jikq32x5qjmi0xdngi0k336rf6bvbcppvlk5gibg5nk7v"; - }) - ]; - postPatch = '' patchShebangs . @@ -61,6 +48,7 @@ in stdenv.mkDerivation rec { ''; doCheck = !(mpiSupport || (stdenv.isDarwin && stdenv.isAarch64)); + checkInputs = [ unzip ]; meta = { description = "Libraries for the Unidata network Common Data Format"; diff --git a/pkgs/development/libraries/nss/esr.nix b/pkgs/development/libraries/nss/esr.nix new file mode 100644 index 00000000000..a958fa059d6 --- /dev/null +++ b/pkgs/development/libraries/nss/esr.nix @@ -0,0 +1,4 @@ +import ./generic.nix { + version = "3.68.3"; + sha256 = "sha256-5NDZsLVhfLM0gSZC7YAfjlH1mVyN2FwN78jMra/Lwzc="; +} diff --git a/pkgs/development/libraries/nss/default.nix b/pkgs/development/libraries/nss/generic.nix index 454c09e1b02..3d109b96790 100644 --- a/pkgs/development/libraries/nss/default.nix +++ b/pkgs/development/libraries/nss/generic.nix @@ -1,3 +1,4 @@ +{ version, sha256 }: { lib , stdenv , fetchurl @@ -22,14 +23,7 @@ let sha256 = "10ibz6y0hknac15zr6dw4gv9nb5r5z9ym6gq18j3xqx7v7n3vpdw"; }; - # NOTE: Whenever you updated this version check if the `cacert` package also - # needs an update. You can run the regular updater script for cacerts. - # It will rebuild itself using the version of this package (NSS) and if - # an update is required do the required changes to the expression. - # Example: nix-shell ./maintainers/scripts/update.nix --argstr package cacert - version = "3.76"; underscoreVersion = lib.replaceStrings [ "." ] [ "_" ] version; - in stdenv.mkDerivation rec { pname = "nss"; @@ -37,7 +31,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://mozilla/security/nss/releases/NSS_${underscoreVersion}_RTM/src/${pname}-${version}.tar.gz"; - sha256 = "0c0nmajcvnm8gqz2v6wrlq04yzy3y7hcs806wjnx4r6kml8073hv"; + inherit sha256; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; @@ -192,7 +186,7 @@ stdenv.mkDerivation rec { homepage = "https://developer.mozilla.org/en-US/docs/Mozilla/Projects/NSS"; description = "A set of libraries for development of security-enabled client and server applications"; changelog = "https://github.com/nss-dev/nss/blob/master/doc/rst/releases/nss_${underscoreVersion}.rst"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ hexa ajs124 ]; license = licenses.mpl20; platforms = platforms.all; }; diff --git a/pkgs/development/libraries/nss/latest.nix b/pkgs/development/libraries/nss/latest.nix new file mode 100644 index 00000000000..db8d0179add --- /dev/null +++ b/pkgs/development/libraries/nss/latest.nix @@ -0,0 +1,10 @@ +# NOTE: Whenever you updated this version check if the `cacert` package also +# needs an update. You can run the regular updater script for cacerts. +# It will rebuild itself using the version of this package (NSS) and if +# an update is required do the required changes to the expression. +# Example: nix-shell ./maintainers/scripts/update.nix --argstr package cacert + +import ./generic.nix { + version = "3.76.1"; + sha256 = "0ai37ncg50n4s5243bfvsip8isqq1y6w2swg1n4xgqg2fk1h8cg1"; +} diff --git a/pkgs/development/libraries/openvino/default.nix b/pkgs/development/libraries/openvino/default.nix index 6e253b97318..0b870bf9e40 100644 --- a/pkgs/development/libraries/openvino/default.nix +++ b/pkgs/development/libraries/openvino/default.nix @@ -129,6 +129,8 @@ stdenv.mkDerivation rec { ''; homepage = "https://docs.openvinotoolkit.org/"; license = with licenses; [ asl20 ]; + platforms = platforms.all; + broken = stdenv.isDarwin; # Cannot find macos sdk maintainers = with maintainers; [ tfmoraes ]; }; } diff --git a/pkgs/development/libraries/pcre/default.nix b/pkgs/development/libraries/pcre/default.nix index 5fc8d496ba9..9d4e52acb4d 100644 --- a/pkgs/development/libraries/pcre/default.nix +++ b/pkgs/development/libraries/pcre/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { outputs = [ "bin" "dev" "out" "doc" "man" ]; # Disable jit on Apple Silicon, https://github.com/zherczeg/sljit/issues/51 - configureFlags = optional (!stdenv.hostPlatform.isRiscV && !(stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64)) "--enable-jit" ++ [ + configureFlags = optional (!(stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64)) "--enable-jit=auto" ++ [ "--enable-unicode-properties" "--disable-cpp" ] diff --git a/pkgs/development/libraries/pcre2/default.nix b/pkgs/development/libraries/pcre2/default.nix index 8393cb8c591..0c57b4cd5cf 100644 --- a/pkgs/development/libraries/pcre2/default.nix +++ b/pkgs/development/libraries/pcre2/default.nix @@ -15,9 +15,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-pcre2-16" "--enable-pcre2-32" - ] ++ lib.optional (!stdenv.hostPlatform.isRiscV && - !(stdenv.hostPlatform.isDarwin && - stdenv.hostPlatform.isAarch64)) "--enable-jit"; + ] ++ lib.optional (!(stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isAarch64)) "--enable-jit=auto"; outputs = [ "bin" "dev" "out" "doc" "man" "devdoc" ]; diff --git a/pkgs/development/libraries/physics/qcdnum/default.nix b/pkgs/development/libraries/physics/qcdnum/default.nix index 834e3fcbba8..f09a1a0e19b 100644 --- a/pkgs/development/libraries/physics/qcdnum/default.nix +++ b/pkgs/development/libraries/physics/qcdnum/default.nix @@ -12,6 +12,10 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ gfortran ]; buildInputs = [ zlib ]; + FFLAGS = [ + "-std=legacy" # fix build with gfortran 10 + ]; + enableParallelBuilding = true; meta = { diff --git a/pkgs/development/libraries/pmdk/default.nix b/pkgs/development/libraries/pmdk/default.nix index 6e0b6ab6722..1f02bfa0dab 100644 --- a/pkgs/development/libraries/pmdk/default.nix +++ b/pkgs/development/libraries/pmdk/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "pmdk"; - version = "1.9.2"; + version = "1.11.1"; src = fetchFromGitHub { owner = "pmem"; repo = "pmdk"; rev = "refs/tags/${version}"; - sha256 = "0awmkj6j9y2pbqqmp9ql00s7qa3mnpppa82dfy5324lindq0z8a1"; + hash = "sha256-8bnyLtgkKfgIjJkfY/ZS1I9aCYcrz0nrdY7m/TUVWAk="; }; nativeBuildInputs = [ autoconf pkg-config gnum4 pandoc ]; @@ -21,6 +21,8 @@ stdenv.mkDerivation rec { patchPhase = "patchShebangs utils"; + NIX_CFLAGS_COMPILE = "-Wno-error"; + installPhase = '' make install prefix=$out diff --git a/pkgs/development/libraries/polkit-qt-1/default.nix b/pkgs/development/libraries/polkit-qt-1/default.nix index 86ef2af96e7..e6cb90994d9 100644 --- a/pkgs/development/libraries/polkit-qt-1/default.nix +++ b/pkgs/development/libraries/polkit-qt-1/default.nix @@ -14,11 +14,11 @@ mkDerivation rec { pname = "polkit-qt-1"; - version = "0.113.0"; + version = "0.114.0"; src = fetchurl { url = "mirror://kde/stable/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-W4ZqKVTvEP+2YVbi/orQMhtVKKjfLkqRsC9QQc5VY6c="; + sha256 = "sha256-LrDyJEWIgpX/or+8DDaThHoPlzu2sMPkzOAhi+fjkH4="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/development/libraries/qrupdate/default.nix b/pkgs/development/libraries/qrupdate/default.nix index 2f119311c1f..d3d821ba1db 100644 --- a/pkgs/development/libraries/qrupdate/default.nix +++ b/pkgs/development/libraries/qrupdate/default.nix @@ -25,12 +25,14 @@ stdenv.mkDerivation rec { "LAPACK=-L${lapack}/lib -llapack" "BLAS=-L${blas}/lib -lblas" "PREFIX=${placeholder "out"}" - ${lib.optionalString blas.isILP64 - # If another application intends to use qrupdate compiled with blas with - # 64 bit support, it should add this to it's FFLAGS as well. See (e.g): - # https://savannah.gnu.org/bugs/?50339 - "FFLAGS=-fdefault-integer-8" - } + "FFLAGS=${toString ([ + "-std=legacy" + ] ++ lib.optionals blas.isILP64 [ + # If another application intends to use qrupdate compiled with blas with + # 64 bit support, it should add this to it's FFLAGS as well. See (e.g): + # https://savannah.gnu.org/bugs/?50339 + "-fdefault-integer-8" + ])}" ) ''; diff --git a/pkgs/development/libraries/qt-5/5.12/default.nix b/pkgs/development/libraries/qt-5/5.12/default.nix index a3664ae9e05..2b8dccf162c 100644 --- a/pkgs/development/libraries/qt-5/5.12/default.nix +++ b/pkgs/development/libraries/qt-5/5.12/default.nix @@ -84,12 +84,6 @@ let qtlocation = [ ./qtlocation-gcc-9.patch ]; qtscript = [ ./qtscript.patch ]; qtserialport = [ ./qtserialport.patch ]; - qtwayland = [ - # NixOS-specific, ensure that app_id is correctly determined for - # wrapped executables from `wrapQtAppsHook` (see comment in patch for further - # context). Beware: shared among different Qt5 versions. - ../modules/qtwayland-app_id.patch - ]; qtwebengine = [ # glibc 2.34 compat (fetchpatch { @@ -152,7 +146,7 @@ let } { inherit self srcs patches; }; - callPackage = self.newScope { inherit qtCompatVersion qtModule srcs; }; + callPackage = self.newScope { inherit qtCompatVersion qtModule srcs stdenv; }; in { inherit callPackage qtCompatVersion qtModule srcs; diff --git a/pkgs/development/libraries/qt-5/5.14/default.nix b/pkgs/development/libraries/qt-5/5.14/default.nix index 2bb0695c8d0..b95d49fef87 100644 --- a/pkgs/development/libraries/qt-5/5.14/default.nix +++ b/pkgs/development/libraries/qt-5/5.14/default.nix @@ -126,13 +126,6 @@ let ./qtwebkit-darwin-no-qos-classes.patch ]; qttools = [ ./qttools.patch ]; - qtwayland = [ - ./qtwayland-libdrm-build.patch - # NixOS-specific, ensure that app_id is correctly determined for - # wrapped executables from `wrapQtAppsHook` (see comment in patch for further - # context). Beware: shared among different Qt5 versions. - ../modules/qtwayland-app_id.patch - ]; }; addPackages = self: with self; @@ -151,7 +144,7 @@ let } { inherit self srcs patches; }; - callPackage = self.newScope { inherit qtCompatVersion qtModule srcs; }; + callPackage = self.newScope { inherit qtCompatVersion qtModule srcs stdenv; }; in { inherit callPackage qtCompatVersion qtModule srcs; diff --git a/pkgs/development/libraries/qt-5/5.14/qtwayland-libdrm-build.patch b/pkgs/development/libraries/qt-5/5.14/qtwayland-libdrm-build.patch deleted file mode 100644 index fb3d6327e45..00000000000 --- a/pkgs/development/libraries/qt-5/5.14/qtwayland-libdrm-build.patch +++ /dev/null @@ -1,56 +0,0 @@ -commit 7217ea9cf297e664be876eb82b66a1b4f157ca80 -Author: Peter Seiderer <ps.report@gmx.net> -Date: Fri Apr 3 21:52:30 2020 +0200 - - fix libdrm related configure test failure - - Fixes: - - Project ERROR: Test config.qtwayland_client.tests.dmabuf-server-buffer tries to use undeclared library 'drm' - Project ERROR: Test config.qtwayland_compositor.tests.dmabuf-server-buffer tries to use undeclared library 'drm' - Project ERROR: Test config.qtwayland_compositor.tests.dmabuf-client-buffer tries to use undeclared library 'drm' - - Task-number: QTBUG-83303 - Change-Id: I3970f4e3855fcfa760493631a14adb6a16950aa9 - Reviewed-by: Ville Voutilainen <ville.voutilainen@qt.io> - Reviewed-by: Heikki Halmet <heikki.halmet@qt.io> - Reviewed-by: Eskil Abrahamsen Blomfeldt <eskil.abrahamsen-blomfeldt@qt.io> - (cherry picked from commit ca63fe81df8ac910f43539719566ed6745700c2b) - (cherry picked from commit 1344ca6b5a8fbc1b28727feea6d856af8bf3bc93) - -diff --git a/src/client/configure.json b/src/client/configure.json -index 06213968..27c73f89 100644 ---- a/src/client/configure.json -+++ b/src/client/configure.json -@@ -74,7 +74,8 @@ - "label": "Linux dma-buf Buffer Sharing", - "type": "compile", - "test": "dmabuf_server_buffer", -- "use": "egl drm" -+ "libs": "-ldrm", -+ "use": "egl" - }, - "vulkan-server-buffer": { - "label": "Vulkan Buffer Sharing", -diff --git a/src/compositor/configure.json b/src/compositor/configure.json -index 0dbb3364..73e4c1a8 100644 ---- a/src/compositor/configure.json -+++ b/src/compositor/configure.json -@@ -80,13 +80,15 @@ - "label": "Linux dma-buf Buffer Sharing", - "type": "compile", - "test": "dmabuf_server_buffer", -- "use": "egl drm" -+ "libs": "-ldrm", -+ "use": "egl" - }, - "dmabuf-client-buffer": { - "label": "Linux Client dma-buf Buffer Sharing", - "type": "compile", - "test": "dmabuf_client_buffer", -- "use": "egl drm" -+ "libs": "-ldrm", -+ "use": "egl" - }, - "vulkan-server-buffer": { - "label": "Vulkan Buffer Sharing", diff --git a/pkgs/development/libraries/qt-5/5.15/default.nix b/pkgs/development/libraries/qt-5/5.15/default.nix index 946c196f4a2..763bfc675cb 100644 --- a/pkgs/development/libraries/qt-5/5.15/default.nix +++ b/pkgs/development/libraries/qt-5/5.15/default.nix @@ -60,12 +60,6 @@ let ./qtwebengine-darwin-no-platform-check.patch ./qtwebengine-mac-dont-set-dsymutil-path.patch ]; - qtwayland = [ - # NixOS-specific, ensure that app_id is correctly determined for - # wrapped executables from `wrapQtAppsHook` (see comment in patch for further - # context). Beware: shared among different Qt5 versions. - ../modules/qtwayland-app_id.patch - ]; qtwebkit = [ (fetchpatch { name = "qtwebkit-bison-3.7-build.patch"; @@ -107,7 +101,7 @@ let } { inherit self srcs patches; }; - callPackage = self.newScope { inherit qtCompatVersion qtModule srcs; }; + callPackage = self.newScope { inherit qtCompatVersion qtModule srcs stdenv; }; in { inherit callPackage qtCompatVersion qtModule srcs; diff --git a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json index 8bf6386c4c6..b772331fc3d 100644 --- a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json +++ b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json @@ -1,117 +1,117 @@ { "qt3d": { "url": "https://invent.kde.org/qt/qt/qt3d.git", - "rev": "dba14d48611b9e9d59576172658779ab4a39b416", + "rev": "6d926ec2739f2289c6b0bbfbc325700046e1ceee", "sha256": "1w2m1rm6mhj9qbanak36rqvc30x495zvj7mh2syy1yd29by0g5i8" }, "qtactiveqt": { "url": "https://invent.kde.org/qt/qt/qtactiveqt.git", - "rev": "f0d03da0e37a84029a4eae1733813521482ac1fb", + "rev": "2c53a16f431bbb950bfca8ac32ddabf217a0bf04", "sha256": "0llk76lf0mh4mzj7pwd8cs55wpmfq8v1bsdzvizb1sx0vfbjh8g6" }, "qtandroidextras": { "url": "https://invent.kde.org/qt/qt/qtandroidextras.git", - "rev": "8cce1098c59534352aa0f343ea73861f603ac04a", + "rev": "1939eada1cdf00052bba32657d9d975c1e255128", "sha256": "130a1yda2m7pa10as3rccz84m3617422n6s51pdn4kp8p8rk7cs6" }, "qtbase": { "url": "https://invent.kde.org/qt/qt/qtbase.git", - "rev": "d16bf02a11953dcac01dca73e6f3778f293adefe", - "sha256": "0rpyd5r60707lzfmfi3y501c7is1gzhh30bframsy8bwglck2hjj" + "rev": "ee7a89b2c4750bc3cabe4aeb466645d6ac2a872b", + "sha256": "10aj4nxfpx34k0if2kl5sxfjpk3sb1r9z7p6haypjpw60cssjbsl" }, "qtcharts": { "url": "https://invent.kde.org/qt/qt/qtcharts.git", - "rev": "130463160b4923069eb98da49edaf7d93180f4f8", - "sha256": "19g35cddbfh307mk76wac1ps03warynlsj7xi8i596bxiaf7i4pw" + "rev": "f13988aa1ad9de5d92e7b0ba4d0d947dd019d759", + "sha256": "1l7zmdkakc7bc9c10nzijg86ps9f3jpi1nblkfxr6521g0xjrmb8" }, "qtconnectivity": { "url": "https://invent.kde.org/qt/qt/qtconnectivity.git", - "rev": "5e9ca5d36d65dadb98ef90013a1dcf15fbd7ae26", - "sha256": "1lpiq3svlnj8f8apd12if11sng7k0l8y6vhr317srzz4dd77cfry" + "rev": "aa2def2bdb76f8fd2454dc4515883fd7b5ddb521", + "sha256": "1fy4anhj432fz05kinb67v8ckdp9h7150fhy4dm6hgbjq6y7j16g" }, "qtdatavis3d": { "url": "https://invent.kde.org/qt/qt/qtdatavis3d.git", - "rev": "c085311c02dd216e5a041b90c164d55b3cf3ce92", + "rev": "19af9584f7b80928ee49950c573c770af68c9519", "sha256": "0xya1m2csb42yisl90s9822p9q92n7ags909nlbapfsb49qwsqnj" }, "qtdeclarative": { "url": "https://invent.kde.org/qt/qt/qtdeclarative.git", - "rev": "1d49a5b678957adde7e2db23a485a3f48157bc8f", - "sha256": "1wdpgh23mdn0nny9c837iyg9kszc3m4cdmaanf8glymkzn0rkd8w" + "rev": "02105099301450c890e1caba977ef44efdc43da7", + "sha256": "0wk8a9fbjwrqwb4gj5s78ipg1svdrhz80cykjd6qgkd26dh1p4kn" }, "qtdoc": { "url": "https://invent.kde.org/qt/qt/qtdoc.git", - "rev": "897e90fe304d844beaf694b82a93a50237fa8b9e", - "sha256": "1c4m9vlgg6bfw7hwzanl5s4vslg0r7xiz50lanhqrlcrr9i36xs1" + "rev": "ed002122ce74b3505ba55262ddbc842a810e8159", + "sha256": "03hb1jgx49rh5gldxq7d85s1ny0yl64nylw7d61dvsgbs422fqn9" }, "qtgamepad": { "url": "https://invent.kde.org/qt/qt/qtgamepad.git", - "rev": "64afa18a0a1e9588060e2e6d917bb01ccdd48a81", + "rev": "6b7a6303439f83147680723f4d8142d676cdb928", "sha256": "1h9yb0asprynnb2qyjbmyglrkk9f9v19g6zzpk0gmixrp0h8gk46" }, "qtgraphicaleffects": { "url": "https://invent.kde.org/qt/qt/qtgraphicaleffects.git", - "rev": "c36998dc1581167b12cc3de8e4ac68c2a5d9f76e", + "rev": "379577925766385991f413a2b0d0d46831381ffa", "sha256": "0x11n2fym765z3gyb4xnfl7v6zrip1wjkkl6nx1bxaya173fvdw8" }, "qtimageformats": { "url": "https://invent.kde.org/qt/qt/qtimageformats.git", - "rev": "cb82c74310837fe4e832c8ab72176a5d63e4355f", - "sha256": "0j4cv5sa6mm3adcjw8cv6kbzrslmhjc1rgxqgc130l8vm3vmgbkr" + "rev": "90038c936763645610fe1e5f05cfc025e4d98631", + "sha256": "1yqfz58p7s92jr8d4lk4n0dv6ij8fslh4sxdz0azd0p6077rim77" }, "qtlocation": { "url": "https://invent.kde.org/qt/qt/qtlocation.git", - "rev": "861e372b6ad81570d4f496e42fb25a6699b72f2f", - "sha256": "1g24pg9v6sv5zf80r48innp3h4g0hss69hnr7ygfzfvfnmmn6g52" + "rev": "e07f35879536640ad784e71e5261c5a597d504f5", + "sha256": "1yhwaz2wyq2hx9bqrcimabj9jbv2kr9h0czxxryh5b9b6aim6ncw" }, "qtlottie": { "url": "https://invent.kde.org/qt/qt/qtlottie.git", - "rev": "fa8c8bfc6742ab98b61d1351e054e0e73e9a42f4", + "rev": "fca3f80f0ce389271e5bd9af864ce56a313d359a", "sha256": "1xgykaw8qjnaip6h9jx0nfadc9amb6aclk758vm5pp43dvs5j96r" }, "qtmacextras": { "url": "https://invent.kde.org/qt/qt/qtmacextras.git", - "rev": "e72896968697e2a8af16a312e1560948e4c40f30", - "sha256": "1hndpbr1nnybn7frg76q99bk1c8fhvra6wjm0q78p4a8pinrvcms" + "rev": "80bc8d86508579c7a57110c09a44e33f9d8bc0e5", + "sha256": "1n9qixhgz66frsp56cr7zzaxcns3ijip46pa9zcz3m0f438n08z7" }, "qtmultimedia": { "url": "https://invent.kde.org/qt/qt/qtmultimedia.git", - "rev": "bd29c87027637a013f2c5e3b549fcda84e4d7545", - "sha256": "11pz9zzrhsr3n78ga7l3kp3gi20rpxsa4iz3wclhcbcm2xr3nd94" + "rev": "fa6c3d653682f9fd331d859c7196a291a8a4d8d5", + "sha256": "0x4112b93dryfgy6w49z3jqd8xi8pvc3xqfn2j0n0qhdp4vvz5sl" }, "qtnetworkauth": { "url": "https://invent.kde.org/qt/qt/qtnetworkauth.git", - "rev": "53870ee9bb9117702cd1f11cb1c5d1cfc2d5394a", + "rev": "958db00a2064f77b354b573102ca2c2b2e07529c", "sha256": "0idaysqpwrghih7ijrm9hagj9jw3fy9nw539fr4d9rmcggnkkzn2" }, "qtpurchasing": { "url": "https://invent.kde.org/qt/qt/qtpurchasing.git", - "rev": "cbf444fb570ca4f4ca21d963d2ae4010f10d473e", + "rev": "255b9e16f286003bbfaff9d48e4548fb0cb3b398", "sha256": "1cki7n62wqm3xxn36mka0y67ngn7jvjkrvr08vsassbjb7kfsmxp" }, "qtquick3d": { "url": "https://invent.kde.org/qt/qt/qtquick3d.git", - "rev": "3e3e53c834b25dc2959dd30f319d12d6f84ee1e3", - "sha256": "1b1khfg26zl3p28yvhwjfldqy3flh10pb5hm5z0av03rz7jy7l8s" + "rev": "1ede2ac20170357b3e8d7d9810e5474e08170827", + "sha256": "1sxlyv1y6aanln7cv1m8fgjkp72lgx2k4q8a23m79g7xryl0xx2a" }, "qtquickcontrols": { "url": "https://invent.kde.org/qt/qt/qtquickcontrols.git", - "rev": "cf3f6d7fec824cdf01f9b329ab3b92b1c0e0a420", - "sha256": "1vxp0kwigwhqyyfm0xg8llyd1l1f4l18hmk6xqkm57xpi15x55bc" + "rev": "d054de15b3c9ead0f96655ddfb1a6381ed7a0e2b", + "sha256": "0inym59pnr6pk9y4im2fsq1hzs8b4rwqs3x6cgc61z3kqyv74cb6" }, "qtquickcontrols2": { "url": "https://invent.kde.org/qt/qt/qtquickcontrols2.git", - "rev": "d8d6b14b9907adbc6ce307d52be34aaa761a58fa", - "sha256": "15c7nrvvn7qc3l7kdbl5wdpazqwv8zvg1aij2jvcrhbymn0zl3mc" + "rev": "26bd7f5414dc592ab5277e2bb4ad0199faa889de", + "sha256": "0d53d1fqcc7ccd9ljr3q1qxd7k7kkn6msqa81592pg6b4ridzdsq" }, "qtquicktimeline": { "url": "https://invent.kde.org/qt/qt/qtquicktimeline.git", - "rev": "67503cdadea43b95ddad0de1a04951aff0ce1a07", - "sha256": "0h4b3ibcf6rsmqmcfbwbk9pbvw3b9cac8nx2538aqvnpyyp1vhid" + "rev": "98b1ff53458887061b4bcc183efcce899f432394", + "sha256": "1q4d88cym0c5vmw40qjp968x5sp7dx4mq6cr1r6px9i0ifvimdrg" }, "qtremoteobjects": { "url": "https://invent.kde.org/qt/qt/qtremoteobjects.git", - "rev": "4d6d1e35fb8e0cb900b5e5e9266edea51dc4f735", + "rev": "581475dfeb44c8b51c0be86e0f2f57df7d117a80", "sha256": "1zbxl5jk7x8qklrnbbaikymyviigqdq7vf0wc8gzls4126vcx146" }, "qtscript": { @@ -121,87 +121,87 @@ }, "qtscxml": { "url": "https://invent.kde.org/qt/qt/qtscxml.git", - "rev": "7a15000f42c7a3171719727cd056f82a78244ed7", - "sha256": "1i2ajsj9pb1s4lk4djj1h1ay9mkz1z3m75a747cspyc1p1iymipq" + "rev": "50d2da3965ed8e85f3f5f5760393c42b12d34a9f", + "sha256": "148qdyw084agpp4n31cfcgk39ppwf9ndifnvihd94c6ksf1ax3ks" }, "qtsensors": { "url": "https://invent.kde.org/qt/qt/qtsensors.git", - "rev": "921a31375f29e429e95352b08b2b9dbfea663cb1", - "sha256": "1ijayk6lf34nwv7s3ib3cfqx9sjrmr1c6jnziwmxa1l6fy3ik4g8" + "rev": "975ba788d3d0ee87aa08bb5301cd33dcbf00521b", + "sha256": "13x0d0ky5dybp1lq39yy82xg7hxdvmksam8r85gqargsi0zr5s8x" }, "qtserialbus": { "url": "https://invent.kde.org/qt/qt/qtserialbus.git", - 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"rev": "33693a928986006d79c1ee743733cde5966ac402", - "sha256": "02n0lppsp6g4s9bdvnfxpf7ndkbs9bzm0clcwvirwf2cd8q95a4n" + "rev": "a3e5b2eb8ef5982bc1fffb390ebcd141be1deee4", + "sha256": "1x7vzqvc80k0fanvahibmglcv4za07hfiamp26wkhmk0g634ms2q" }, "qttranslations": { "url": "https://invent.kde.org/qt/qt/qttranslations.git", - "rev": "8fbbdf21f127197f97b58c7d80d2fa2a59135638", + "rev": "a6d5e7f84a57394db4c8b069f81c56cfeb802e19", "sha256": "06r2jb2fsdr5fvxs748war0lr4mm3l3d3b37xc4n73y294vwrmn7" }, "qtvirtualkeyboard": { "url": "https://invent.kde.org/qt/qt/qtvirtualkeyboard.git", - "rev": "98d1fd864cbb6c7c012c4139118808af110fb8f0", - "sha256": "07xjmhca7z5bva03zk73d948qz0a3wnn4kvyy6j4cnp3w5giz5kc" + "rev": "bb40dee811333929dd467a480dce24ab7af84ef9", + "sha256": "0w6li1qwm2x4plzixd1dv6s1jvcmyrbaw328sri2cmiswajhywdw" }, "qtwayland": { "url": "https://invent.kde.org/qt/qt/qtwayland.git", - "rev": "214f7ab9d3384a4123f14d9f6cd0205cf0aaa794", - "sha256": "1qd64w5c16gmpgi936dfjc0pn1a1rbs752k8lfqv2xwysx7qkqwi" + "rev": "118674630cdb5933e66a8b4415afe7c716ad4662", + "sha256": "1zvx11z0cfv2avj211zsh79806m6mdkk3kczwhcd98k1qs9r9d3p" }, "qtwebchannel": { "url": "https://invent.kde.org/qt/qt/qtwebchannel.git", - "rev": "fa8b07105b5e274daaa8adcc129fa4aa0447f9f7", + "rev": "611016a49f3a9ba7b58bef29bc295323e06373ae", "sha256": "0mggqa8kixknbm1p5i5lkrmkj1na3b2xflj011dkjbj8wb78i42n" }, "qtwebglplugin": { "url": "https://invent.kde.org/qt/qt/qtwebglplugin.git", - "rev": "550a8cee241bbf8c11863dec9587d579dcb1108b", + "rev": "4318ad91c2a8bea3a0aaaa64aaf49d3b997e50a1", "sha256": "0p1y0b8zsm7rrkhhylndp282ghgki2cjrgc4n5zhjn732ahxg515" }, "qtwebsockets": { "url": "https://invent.kde.org/qt/qt/qtwebsockets.git", - "rev": "b13b56904b76e96ea52d0efe56395acc94b17d96", - "sha256": "047asrq7c44v7cn2d7c5zba47qzpsb6nidba77i2xn7gqlfv6z3b" + "rev": "7196d2cc34adf9f45b50a9488f4ff95b36092993", + "sha256": "1a7n5i4s6nsb19z4r3m3w7gadjpp0irm77ysk61axqjda4ypi7fw" }, "qtwebview": { "url": "https://invent.kde.org/qt/qt/qtwebview.git", - "rev": "920de5f1cd9f9001cfef1bfd2c19e6720793362f", - "sha256": "04hnqalabhypkd2hgl45jxf9p1p6dgjwlc5b7gs4f6588lafgd3f" + "rev": "ec4de0cec2299f4ae0228ea2c71011e0520ca40e", + "sha256": "1na9xv2q4wwy10bcr7684i59d9a20n6s91m12n49yjgrhpn4f4jv" }, "qtwinextras": { "url": "https://invent.kde.org/qt/qt/qtwinextras.git", - "rev": "3df03dab21f3e84d5a7274c64dd879854ca1bfe7", - "sha256": "12dkw982xcm7hxw3lxhg34wny4srbickxm9s3nz7bdyp9dmqnygx" + "rev": "051202df9c553d7c0a384f07bd67fde98f3b02c4", + "sha256": "0d8y4x41slqjr3nflb14ah1wl2hrlir7331ch9k1qfrk3798a760" }, "qtx11extras": { "url": "https://invent.kde.org/qt/qt/qtx11extras.git", - "rev": "3898f5484fd4864b047729bfeda9a1222f32364f", + "rev": "f628d7a60e45d90a439cb0a393a6229ac6892be5", "sha256": "04rp8arml19b03iybd7sa78dsdv7386m9ymmgqciwl13dhwjssra" }, "qtxmlpatterns": { "url": "https://invent.kde.org/qt/qt/qtxmlpatterns.git", - "rev": "189e28d0aff1f3d7960228ba318b83e3cadac98c", + "rev": "af4958af9d628d6124e64abd9743abce42f15a6f", "sha256": "0vs9j2i1dnlivcrzz175zz66ql1m8mrdqkglvyqjqv6cb7mpskrq" } } diff --git a/pkgs/development/libraries/qt-5/modules/qtbase.nix b/pkgs/development/libraries/qt-5/modules/qtbase.nix index 0222a708bb8..c3da951ca52 100644 --- a/pkgs/development/libraries/qt-5/modules/qtbase.nix +++ b/pkgs/development/libraries/qt-5/modules/qtbase.nix @@ -7,11 +7,10 @@ , libiconv, libobjc, xcbuild, AGL, AppKit, ApplicationServices, Carbon, Cocoa, CoreAudio, CoreBluetooth , CoreLocation, CoreServices, DiskArbitration, Foundation, OpenGL, MetalKit, IOKit -, dbus, fontconfig, freetype, glib, harfbuzz, icu, libX11, libXcomposite -, libXcursor, libXext, libXi, libXrender, libinput, libjpeg, libpng -, libxcb, libxkbcommon, libxml2, libxslt, openssl, pcre16, pcre2, sqlite, udev -, xcbutil, xcbutilimage, xcbutilkeysyms, xcbutilrenderutil, xcbutilwm -, zlib, at-spi2-core +, dbus, fontconfig, freetype, glib, harfbuzz, icu, libdrm, libX11, libXcomposite +, libXcursor, libXext, libXi, libXrender, libinput, libjpeg, libpng , libxcb +, libxkbcommon, libxml2, libxslt, openssl, pcre16, pcre2, sqlite, udev, xcbutil +, xcbutilimage, xcbutilkeysyms, xcbutilrenderutil, xcbutilwm , zlib, at-spi2-core # optional dependencies , cups ? null, libmysqlclient ? null, postgresql ? null @@ -62,6 +61,8 @@ stdenv.mkDerivation { # Text rendering fontconfig freetype + libdrm + # X11 libs libX11 libXcomposite libXext libXi libXrender libxcb libxkbcommon xcbutil xcbutilimage xcbutilkeysyms xcbutilrenderutil xcbutilwm @@ -151,6 +152,9 @@ stdenv.mkDerivation { ''} NIX_CFLAGS_COMPILE+=" -DNIXPKGS_QT_PLUGIN_PREFIX=\"$qtPluginPrefix\"" + + # paralellize compilation of qtmake, which happens within ./configure + export MAKEFLAGS+=" -j$NIX_BUILD_CORES" '' + lib.optionalString (compareVersion "5.15.0" >= 0) '' ./bin/syncqt.pl -version $version ''; diff --git a/pkgs/development/libraries/qt-5/modules/qtmultimedia.nix b/pkgs/development/libraries/qt-5/modules/qtmultimedia.nix index baf5c30e73c..41a7eb6776c 100644 --- a/pkgs/development/libraries/qt-5/modules/qtmultimedia.nix +++ b/pkgs/development/libraries/qt-5/modules/qtmultimedia.nix @@ -15,8 +15,9 @@ qtModule { pname = "qtmultimedia"; qtInputs = [ qtbase qtdeclarative ]; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ gstreamer gst-plugins-base libpulseaudio ] - ++ lib.optional (stdenv.isLinux) alsa-lib + buildInputs = [ gstreamer gst-plugins-base ] + # https://github.com/NixOS/nixpkgs/pull/169336 regarding libpulseaudio + ++ lib.optionals stdenv.isLinux [ libpulseaudio alsa-lib ] ++ lib.optional (lib.versionAtLeast qtbase.version "5.14.0" && stdenv.isLinux) wayland; outputs = [ "bin" "dev" "out" ]; qmakeFlags = [ "GST_VERSION=1.0" ]; diff --git a/pkgs/development/libraries/qt-5/modules/qtwayland.nix b/pkgs/development/libraries/qt-5/modules/qtwayland.nix index 1bd1adedaf0..851e4ad6966 100644 --- a/pkgs/development/libraries/qt-5/modules/qtwayland.nix +++ b/pkgs/development/libraries/qt-5/modules/qtwayland.nix @@ -6,4 +6,10 @@ qtModule { buildInputs = [ wayland ]; nativeBuildInputs = [ pkg-config ]; outputs = [ "out" "dev" "bin" ]; + patches = [ + # NixOS-specific, ensure that app_id is correctly determined for + # wrapped executables from `wrapQtAppsHook` (see comment in patch for further + # context). Beware: shared among different Qt5 versions. + ./qtwayland-app_id.patch + ]; } diff --git a/pkgs/development/libraries/qt-5/qtModule.nix b/pkgs/development/libraries/qt-5/qtModule.nix index 3323e3fb4cc..b74d5e08680 100644 --- a/pkgs/development/libraries/qt-5/qtModule.nix +++ b/pkgs/development/libraries/qt-5/qtModule.nix @@ -14,7 +14,7 @@ in mkDerivation (args // { inherit pname version src; - patches = args.patches or patches.${pname} or []; + patches = (args.patches or []) ++ (patches.${pname} or []); nativeBuildInputs = (args.nativeBuildInputs or []) ++ [ perl self.qmake ]; propagatedBuildInputs = args.qtInputs ++ (args.propagatedBuildInputs or []); diff --git a/pkgs/development/libraries/re2/default.nix b/pkgs/development/libraries/re2/default.nix index 2cdad981fbd..4c8249abe87 100644 --- a/pkgs/development/libraries/re2/default.nix +++ b/pkgs/development/libraries/re2/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "re2"; - version = "2022-02-01"; + version = "2022-04-01"; src = fetchFromGitHub { owner = "google"; repo = "re2"; rev = version; - sha256 = "sha256-3RspCfJD2jV7GYuzeBUcxkZsdHyL14kaz8lSoIrH7b8="; + sha256 = "sha256-ywmXIAyVWYMKBOsAndcq7dFYpn9ZgNz5YWTPjylXxsk="; }; preConfigure = '' diff --git a/pkgs/development/libraries/rlottie/default.nix b/pkgs/development/libraries/rlottie/default.nix index f1d3ffd0212..6f641bd6a60 100644 --- a/pkgs/development/libraries/rlottie/default.nix +++ b/pkgs/development/libraries/rlottie/default.nix @@ -1,4 +1,11 @@ -{ lib, stdenv, fetchFromGitHub, meson, ninja, pkg-config }: +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, meson +, ninja +, pkg-config +}: stdenv.mkDerivation rec { pname = "rlottie"; @@ -11,6 +18,14 @@ stdenv.mkDerivation rec { sha256 = "10bxr1zf9wxl55d4cw2j02r6sgqln7mbxplhhfvhw0z92fi40kr3"; }; + patches = [ + # Fixed build with GCC 11 + (fetchpatch { + url = "https://github.com/Samsung/rlottie/commit/2d7b1fa2b005bba3d4b45e8ebfa632060e8a157a.patch"; + hash = "sha256-2JPsj0WiBMMu0N3NUYDrHumvPN2YS8nPq5Zwagx6UWE="; + }) + ]; + nativeBuildInputs = [ meson ninja pkg-config ]; meta = with lib; { diff --git a/pkgs/development/libraries/science/math/cudnn/extension.nix b/pkgs/development/libraries/science/math/cudnn/extension.nix index 172935fc979..f1bdfb9836e 100644 --- a/pkgs/development/libraries/science/math/cudnn/extension.nix +++ b/pkgs/development/libraries/science/math/cudnn/extension.nix @@ -5,7 +5,11 @@ final: prev: let ### CuDNN - buildCuDnnPackage = args: callPackage ./generic.nix {} args; + buildCuDnnPackage = args: + let + useCudatoolkitRunfile = lib.versionOlder cudaVersion "11.3.999"; + in + callPackage ./generic.nix { inherit useCudatoolkitRunfile; } args; toUnderscore = str: lib.replaceStrings ["."] ["_"] str; diff --git a/pkgs/development/libraries/science/math/cudnn/generic.nix b/pkgs/development/libraries/science/math/cudnn/generic.nix index 2e53bdcdfc4..1e9bac5efed 100644 --- a/pkgs/development/libraries/science/math/cudnn/generic.nix +++ b/pkgs/development/libraries/science/math/cudnn/generic.nix @@ -1,8 +1,14 @@ { stdenv , lib -, cudatoolkit +, zlib +, useCudatoolkitRunfile ? false +, cudaVersion +, cudaMajorVersion +, cudatoolkit # if cuda>=11: only used for .cc +, libcublas ? null # cuda <11 doesn't ship redist packages +, autoPatchelfHook +, autoAddOpenGLRunpathHook , fetchurl -, addOpenGLRunpath , # The distributed version of CUDNN includes both dynamically liked .so files, # as well as statically linked .a files. However, CUDNN is quite large # (multiple gigabytes), so you can save some space in your nix store by @@ -17,44 +23,53 @@ , url , hash ? null , sha256 ? null -, supportedCudaVersions ? [] +, supportedCudaVersions ? [ ] }: assert (hash != null) || (sha256 != null); +assert useCudatoolkitRunfile || (libcublas != null); + let + inherit (cudatoolkit) cc; + majorMinorPatch = version: lib.concatStringsSep "." (lib.take 3 (lib.splitVersion version)); version = majorMinorPatch fullVersion; -in stdenv.mkDerivation { - name = "cudatoolkit-${cudatoolkit.majorVersion}-cudnn-${version}"; + cudatoolkit_root = + if useCudatoolkitRunfile + then cudatoolkit + else libcublas; +in +stdenv.mkDerivation { + pname = "cudatoolkit-${cudaMajorVersion}-cudnn"; inherit version; - # It's often the case that the src depends on the version of cudatoolkit it's - # being linked against, so we pass in `cudatoolkit` as an argument to `mkSrc`. + src = fetchurl { inherit url hash sha256; }; - nativeBuildInputs = [ addOpenGLRunpath ]; + # Check and normalize Runpath against DT_NEEDED using autoPatchelf. + # Prepend /run/opengl-driver/lib using addOpenGLRunpath for dlopen("libcudacuda.so") + nativeBuildInputs = [ + autoPatchelfHook + autoAddOpenGLRunpathHook + ]; + + # Used by autoPatchelfHook + buildInputs = [ + cc.cc.lib # libstdc++ + zlib + cudatoolkit_root + ]; - # Some cuDNN libraries depend on things in cudatoolkit, eg. - # libcudnn_ops_infer.so.8 tries to load libcublas.so.11. So we need to patch - # cudatoolkit into RPATH. See also https://github.com/NixOS/nixpkgs/blob/88a2ad974692a5c3638fcdc2c772e5770f3f7b21/pkgs/development/python-modules/jaxlib/bin.nix#L78-L98. + # We used to patch Runpath here, but now we use autoPatchelfHook # # Note also that version <=8.3.0 contained a subdirectory "lib64/" but in # version 8.3.2 it seems to have been renamed to simply "lib/". installPhase = '' runHook preInstall - function fixRunPath { - p=$(patchelf --print-rpath $1) - patchelf --set-rpath "''${p:+$p:}${lib.makeLibraryPath [ stdenv.cc.cc cudatoolkit.lib ]}:${cudatoolkit}/lib:\$ORIGIN/" $1 - } - - for sofile in {lib,lib64}/lib*.so; do - fixRunPath $sofile - done - mkdir -p $out cp -a include $out/include [ -d "lib/" ] && cp -a lib $out/lib @@ -66,20 +81,20 @@ in stdenv.mkDerivation { runHook postInstall ''; - # Set RUNPATH so that libcuda in /run/opengl-driver(-32)/lib can be found. - # See the explanation in addOpenGLRunpath. - postFixup = '' - for lib in $out/lib/lib*.so; do - addOpenGLRunpath $lib - done + # Without --add-needed autoPatchelf forgets $ORIGIN on cuda>=8.0.5. + postFixup = lib.optionalString (lib.versionAtLeast fullVersion "8.0.5") '' + patchelf $out/lib/libcudnn.so --add-needed libcudnn_cnn_infer.so ''; - propagatedBuildInputs = [ - cudatoolkit - ]; - passthru = { - inherit cudatoolkit; + inherit useCudatoolkitRunfile; + + cudatoolkit = lib.warn '' + cudnn.cudatoolkit passthru attribute is deprecated; + if your derivation uses cudnn directly, it should probably consume cudaPackages instead + '' + cudatoolkit; + majorVersion = lib.versions.major version; }; @@ -89,9 +104,10 @@ in stdenv.mkDerivation { # official version constraints (as recorded in default.nix). In some cases # you _may_ be able to smudge version constraints, just know that you're # embarking into unknown and unsupported territory when doing so. - broken = !(elem cudatoolkit.majorMinorVersion supportedCudaVersions); + broken = !(elem cudaVersion supportedCudaVersions); description = "NVIDIA CUDA Deep Neural Network library (cuDNN)"; homepage = "https://developer.nvidia.com/cudnn"; + # TODO: consider marking unfreRedistributable when not using runfile license = licenses.unfree; platforms = [ "x86_64-linux" ]; maintainers = with maintainers; [ mdaiter samuela ]; diff --git a/pkgs/development/libraries/smesh/default.nix b/pkgs/development/libraries/smesh/default.nix index 8494799333b..0181977873a 100644 --- a/pkgs/development/libraries/smesh/default.nix +++ b/pkgs/development/libraries/smesh/default.nix @@ -23,6 +23,8 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ninja ]; buildInputs = [ opencascade ] ++ lib.optionals stdenv.isDarwin [ Cocoa ]; + NIX_CFLAGS_COMPILE = [ "-std=c++11" ]; + meta = with lib; { description = "Extension to OCE providing advanced meshing features"; homepage = "https://github.com/tpaviot/smesh"; diff --git a/pkgs/development/libraries/sundials/default.nix b/pkgs/development/libraries/sundials/default.nix index 75c238a430c..0b3dff1ebd8 100644 --- a/pkgs/development/libraries/sundials/default.nix +++ b/pkgs/development/libraries/sundials/default.nix @@ -59,6 +59,19 @@ stdenv.mkDerivation rec { )] ; + # disable stackprotector on aarch64-darwin for now + # https://github.com/NixOS/nixpkgs/issues/127608 + # + # build error: + # + # /private/tmp/nix-build-sundials-5.7.0.drv-0/ccD2dUtR.s:21:15: error: index must be an integer in range [-256, 255]. + # ldr x0, [x0, ___stack_chk_guard];momd + # ^ + # /private/tmp/nix-build-sundials-5.7.0.drv-0/ccD2dUtR.s:46:15: error: index must be an integer in range [-256, 255]. + # ldr x0, [x0, ___stack_chk_guard];momd + + hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ]; + doCheck = true; checkTarget = "test"; diff --git a/pkgs/development/libraries/talloc/default.nix b/pkgs/development/libraries/talloc/default.nix index 07d830f00ce..cb7af61a63e 100644 --- a/pkgs/development/libraries/talloc/default.nix +++ b/pkgs/development/libraries/talloc/default.nix @@ -21,11 +21,12 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config - fixDarwinDylibNames python3 wafHook docbook-xsl-nons docbook_xml_dtd_42 + ] ++ lib.optionals stdenv.isDarwin [ + fixDarwinDylibNames ]; buildInputs = [ diff --git a/pkgs/development/libraries/tpm2-tss/default.nix b/pkgs/development/libraries/tpm2-tss/default.nix index 5ab4ff3b413..34a545d7996 100644 --- a/pkgs/development/libraries/tpm2-tss/default.nix +++ b/pkgs/development/libraries/tpm2-tss/default.nix @@ -2,6 +2,7 @@ , autoreconfHook, autoconf-archive, pkg-config, doxygen, perl , openssl, json_c, curl, libgcrypt , cmocka, uthash, ibm-sw-tpm2, iproute2, procps, which +, shadow }: let # Avoid a circular dependency on Linux systems (systemd depends on tpm2-tss, @@ -14,17 +15,18 @@ in stdenv.mkDerivation rec { pname = "tpm2-tss"; - version = "3.0.3"; + version = "3.2.0"; src = fetchFromGitHub { owner = "tpm2-software"; repo = pname; rev = version; - sha256 = "106yhsjwjadxsl9dqxywg287mdwsksman02hdalhav18vcnvnlpj"; + sha256 = "1jijxnvjcsgz5yw4i9fj7ycdnnz90r3l0zicpwinswrw47ac3yy5"; }; nativeBuildInputs = [ autoreconfHook autoconf-archive pkg-config doxygen perl + shadow ]; # cmocka is checked / used(?) in the configure script @@ -57,6 +59,8 @@ stdenv.mkDerivation rec { --replace '@PREFIX@' $out/lib/ substituteInPlace ./test/unit/tctildr-dl.c \ --replace '@PREFIX@' $out/lib + substituteInPlace ./configure.ac \ + --replace 'm4_esyscmd_s([git describe --tags --always --dirty])' '${version}' ''; configureFlags = lib.optionals (stdenv.buildPlatform == stdenv.hostPlatform) [ @@ -85,6 +89,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/tpm2-software/tpm2-tss"; license = licenses.bsd2; platforms = platforms.linux; - maintainers = with maintainers; [ delroth ]; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/libraries/zlib/CVE-2018-25032-1.patch b/pkgs/development/libraries/zlib/CVE-2018-25032-1.patch new file mode 100644 index 00000000000..1ade02654e5 --- /dev/null +++ b/pkgs/development/libraries/zlib/CVE-2018-25032-1.patch @@ -0,0 +1,346 @@ +From 5c44459c3b28a9bd3283aaceab7c615f8020c531 Mon Sep 17 00:00:00 2001 +From: Mark Adler <madler@alumni.caltech.edu> +Date: Tue, 17 Apr 2018 22:09:22 -0700 +Subject: [PATCH 1/2] Fix a bug that can crash deflate on some input when using + Z_FIXED. + +This bug was reported by Danilo Ramos of Eideticom, Inc. It has +lain in wait 13 years before being found! The bug was introduced +in zlib 1.2.2.2, with the addition of the Z_FIXED option. That +option forces the use of fixed Huffman codes. For rare inputs with +a large number of distant matches, the pending buffer into which +the compressed data is written can overwrite the distance symbol +table which it overlays. That results in corrupted output due to +invalid distances, and can result in out-of-bound accesses, +crashing the application. + +The fix here combines the distance buffer and literal/length +buffers into a single symbol buffer. Now three bytes of pending +buffer space are opened up for each literal or length/distance +pair consumed, instead of the previous two bytes. This assures +that the pending buffer cannot overwrite the symbol table, since +the maximum fixed code compressed length/distance is 31 bits, and +since there are four bytes of pending space for every three bytes +of symbol space. +--- + deflate.c | 74 ++++++++++++++++++++++++++++++++++++++++--------------- + deflate.h | 25 +++++++++---------- + trees.c | 50 +++++++++++-------------------------- + 3 files changed, 79 insertions(+), 70 deletions(-) + +diff --git a/deflate.c b/deflate.c +index 425babc..19cba87 100644 +--- a/deflate.c ++++ b/deflate.c +@@ -255,11 +255,6 @@ int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, + int wrap = 1; + static const char my_version[] = ZLIB_VERSION; + +- ushf *overlay; +- /* We overlay pending_buf and d_buf+l_buf. This works since the average +- * output size for (length,distance) codes is <= 24 bits. +- */ +- + if (version == Z_NULL || version[0] != my_version[0] || + stream_size != sizeof(z_stream)) { + return Z_VERSION_ERROR; +@@ -329,9 +324,47 @@ int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, + + s->lit_bufsize = 1 << (memLevel + 6); /* 16K elements by default */ + +- overlay = (ushf *) ZALLOC(strm, s->lit_bufsize, sizeof(ush)+2); +- s->pending_buf = (uchf *) overlay; +- s->pending_buf_size = (ulg)s->lit_bufsize * (sizeof(ush)+2L); ++ /* We overlay pending_buf and sym_buf. This works since the average size ++ * for length/distance pairs over any compressed block is assured to be 31 ++ * bits or less. ++ * ++ * Analysis: The longest fixed codes are a length code of 8 bits plus 5 ++ * extra bits, for lengths 131 to 257. The longest fixed distance codes are ++ * 5 bits plus 13 extra bits, for distances 16385 to 32768. The longest ++ * possible fixed-codes length/distance pair is then 31 bits total. ++ * ++ * sym_buf starts one-fourth of the way into pending_buf. So there are ++ * three bytes in sym_buf for every four bytes in pending_buf. Each symbol ++ * in sym_buf is three bytes -- two for the distance and one for the ++ * literal/length. As each symbol is consumed, the pointer to the next ++ * sym_buf value to read moves forward three bytes. From that symbol, up to ++ * 31 bits are written to pending_buf. The closest the written pending_buf ++ * bits gets to the next sym_buf symbol to read is just before the last ++ * code is written. At that time, 31*(n-2) bits have been written, just ++ * after 24*(n-2) bits have been consumed from sym_buf. sym_buf starts at ++ * 8*n bits into pending_buf. (Note that the symbol buffer fills when n-1 ++ * symbols are written.) The closest the writing gets to what is unread is ++ * then n+14 bits. Here n is lit_bufsize, which is 16384 by default, and ++ * can range from 128 to 32768. ++ * ++ * Therefore, at a minimum, there are 142 bits of space between what is ++ * written and what is read in the overlain buffers, so the symbols cannot ++ * be overwritten by the compressed data. That space is actually 139 bits, ++ * due to the three-bit fixed-code block header. ++ * ++ * That covers the case where either Z_FIXED is specified, forcing fixed ++ * codes, or when the use of fixed codes is chosen, because that choice ++ * results in a smaller compressed block than dynamic codes. That latter ++ * condition then assures that the above analysis also covers all dynamic ++ * blocks. A dynamic-code block will only be chosen to be emitted if it has ++ * fewer bits than a fixed-code block would for the same set of symbols. ++ * Therefore its average symbol length is assured to be less than 31. So ++ * the compressed data for a dynamic block also cannot overwrite the ++ * symbols from which it is being constructed. ++ */ ++ ++ s->pending_buf = (uchf *) ZALLOC(strm, s->lit_bufsize, 4); ++ s->pending_buf_size = (ulg)s->lit_bufsize * 4; + + if (s->window == Z_NULL || s->prev == Z_NULL || s->head == Z_NULL || + s->pending_buf == Z_NULL) { +@@ -340,8 +373,12 @@ int ZEXPORT deflateInit2_(strm, level, method, windowBits, memLevel, strategy, + deflateEnd (strm); + return Z_MEM_ERROR; + } +- s->d_buf = overlay + s->lit_bufsize/sizeof(ush); +- s->l_buf = s->pending_buf + (1+sizeof(ush))*s->lit_bufsize; ++ s->sym_buf = s->pending_buf + s->lit_bufsize; ++ s->sym_end = (s->lit_bufsize - 1) * 3; ++ /* We avoid equality with lit_bufsize*3 because of wraparound at 64K ++ * on 16 bit machines and because stored blocks are restricted to ++ * 64K-1 bytes. ++ */ + + s->level = level; + s->strategy = strategy; +@@ -552,7 +589,7 @@ int ZEXPORT deflatePrime (strm, bits, value) + + if (deflateStateCheck(strm)) return Z_STREAM_ERROR; + s = strm->state; +- if ((Bytef *)(s->d_buf) < s->pending_out + ((Buf_size + 7) >> 3)) ++ if (s->sym_buf < s->pending_out + ((Buf_size + 7) >> 3)) + return Z_BUF_ERROR; + do { + put = Buf_size - s->bi_valid; +@@ -1113,7 +1150,6 @@ int ZEXPORT deflateCopy (dest, source) + #else + deflate_state *ds; + deflate_state *ss; +- ushf *overlay; + + + if (deflateStateCheck(source) || dest == Z_NULL) { +@@ -1133,8 +1169,7 @@ int ZEXPORT deflateCopy (dest, source) + ds->window = (Bytef *) ZALLOC(dest, ds->w_size, 2*sizeof(Byte)); + ds->prev = (Posf *) ZALLOC(dest, ds->w_size, sizeof(Pos)); + ds->head = (Posf *) ZALLOC(dest, ds->hash_size, sizeof(Pos)); +- overlay = (ushf *) ZALLOC(dest, ds->lit_bufsize, sizeof(ush)+2); +- ds->pending_buf = (uchf *) overlay; ++ ds->pending_buf = (uchf *) ZALLOC(dest, ds->lit_bufsize, 4); + + if (ds->window == Z_NULL || ds->prev == Z_NULL || ds->head == Z_NULL || + ds->pending_buf == Z_NULL) { +@@ -1148,8 +1183,7 @@ int ZEXPORT deflateCopy (dest, source) + zmemcpy(ds->pending_buf, ss->pending_buf, (uInt)ds->pending_buf_size); + + ds->pending_out = ds->pending_buf + (ss->pending_out - ss->pending_buf); +- ds->d_buf = overlay + ds->lit_bufsize/sizeof(ush); +- ds->l_buf = ds->pending_buf + (1+sizeof(ush))*ds->lit_bufsize; ++ ds->sym_buf = ds->pending_buf + ds->lit_bufsize; + + ds->l_desc.dyn_tree = ds->dyn_ltree; + ds->d_desc.dyn_tree = ds->dyn_dtree; +@@ -1925,7 +1959,7 @@ local block_state deflate_fast(s, flush) + FLUSH_BLOCK(s, 1); + return finish_done; + } +- if (s->last_lit) ++ if (s->sym_next) + FLUSH_BLOCK(s, 0); + return block_done; + } +@@ -2056,7 +2090,7 @@ local block_state deflate_slow(s, flush) + FLUSH_BLOCK(s, 1); + return finish_done; + } +- if (s->last_lit) ++ if (s->sym_next) + FLUSH_BLOCK(s, 0); + return block_done; + } +@@ -2131,7 +2165,7 @@ local block_state deflate_rle(s, flush) + FLUSH_BLOCK(s, 1); + return finish_done; + } +- if (s->last_lit) ++ if (s->sym_next) + FLUSH_BLOCK(s, 0); + return block_done; + } +@@ -2170,7 +2204,7 @@ local block_state deflate_huff(s, flush) + FLUSH_BLOCK(s, 1); + return finish_done; + } +- if (s->last_lit) ++ if (s->sym_next) + FLUSH_BLOCK(s, 0); + return block_done; + } +diff --git a/deflate.h b/deflate.h +index 23ecdd3..d4cf1a9 100644 +--- a/deflate.h ++++ b/deflate.h +@@ -217,7 +217,7 @@ typedef struct internal_state { + /* Depth of each subtree used as tie breaker for trees of equal frequency + */ + +- uchf *l_buf; /* buffer for literals or lengths */ ++ uchf *sym_buf; /* buffer for distances and literals/lengths */ + + uInt lit_bufsize; + /* Size of match buffer for literals/lengths. There are 4 reasons for +@@ -239,13 +239,8 @@ typedef struct internal_state { + * - I can't count above 4 + */ + +- uInt last_lit; /* running index in l_buf */ +- +- ushf *d_buf; +- /* Buffer for distances. To simplify the code, d_buf and l_buf have +- * the same number of elements. To use different lengths, an extra flag +- * array would be necessary. +- */ ++ uInt sym_next; /* running index in sym_buf */ ++ uInt sym_end; /* symbol table full when sym_next reaches this */ + + ulg opt_len; /* bit length of current block with optimal trees */ + ulg static_len; /* bit length of current block with static trees */ +@@ -325,20 +320,22 @@ void ZLIB_INTERNAL _tr_stored_block OF((deflate_state *s, charf *buf, + + # define _tr_tally_lit(s, c, flush) \ + { uch cc = (c); \ +- s->d_buf[s->last_lit] = 0; \ +- s->l_buf[s->last_lit++] = cc; \ ++ s->sym_buf[s->sym_next++] = 0; \ ++ s->sym_buf[s->sym_next++] = 0; \ ++ s->sym_buf[s->sym_next++] = cc; \ + s->dyn_ltree[cc].Freq++; \ +- flush = (s->last_lit == s->lit_bufsize-1); \ ++ flush = (s->sym_next == s->sym_end); \ + } + # define _tr_tally_dist(s, distance, length, flush) \ + { uch len = (uch)(length); \ + ush dist = (ush)(distance); \ +- s->d_buf[s->last_lit] = dist; \ +- s->l_buf[s->last_lit++] = len; \ ++ s->sym_buf[s->sym_next++] = dist; \ ++ s->sym_buf[s->sym_next++] = dist >> 8; \ ++ s->sym_buf[s->sym_next++] = len; \ + dist--; \ + s->dyn_ltree[_length_code[len]+LITERALS+1].Freq++; \ + s->dyn_dtree[d_code(dist)].Freq++; \ +- flush = (s->last_lit == s->lit_bufsize-1); \ ++ flush = (s->sym_next == s->sym_end); \ + } + #else + # define _tr_tally_lit(s, c, flush) flush = _tr_tally(s, 0, c) +diff --git a/trees.c b/trees.c +index 4f4a650..decaeb7 100644 +--- a/trees.c ++++ b/trees.c +@@ -416,7 +416,7 @@ local void init_block(s) + + s->dyn_ltree[END_BLOCK].Freq = 1; + s->opt_len = s->static_len = 0L; +- s->last_lit = s->matches = 0; ++ s->sym_next = s->matches = 0; + } + + #define SMALLEST 1 +@@ -948,7 +948,7 @@ void ZLIB_INTERNAL _tr_flush_block(s, buf, stored_len, last) + + Tracev((stderr, "\nopt %lu(%lu) stat %lu(%lu) stored %lu lit %u ", + opt_lenb, s->opt_len, static_lenb, s->static_len, stored_len, +- s->last_lit)); ++ s->sym_next / 3)); + + if (static_lenb <= opt_lenb) opt_lenb = static_lenb; + +@@ -1017,8 +1017,9 @@ int ZLIB_INTERNAL _tr_tally (s, dist, lc) + unsigned dist; /* distance of matched string */ + unsigned lc; /* match length-MIN_MATCH or unmatched char (if dist==0) */ + { +- s->d_buf[s->last_lit] = (ush)dist; +- s->l_buf[s->last_lit++] = (uch)lc; ++ s->sym_buf[s->sym_next++] = dist; ++ s->sym_buf[s->sym_next++] = dist >> 8; ++ s->sym_buf[s->sym_next++] = lc; + if (dist == 0) { + /* lc is the unmatched char */ + s->dyn_ltree[lc].Freq++; +@@ -1033,30 +1034,7 @@ int ZLIB_INTERNAL _tr_tally (s, dist, lc) + s->dyn_ltree[_length_code[lc]+LITERALS+1].Freq++; + s->dyn_dtree[d_code(dist)].Freq++; + } +- +-#ifdef TRUNCATE_BLOCK +- /* Try to guess if it is profitable to stop the current block here */ +- if ((s->last_lit & 0x1fff) == 0 && s->level > 2) { +- /* Compute an upper bound for the compressed length */ +- ulg out_length = (ulg)s->last_lit*8L; +- ulg in_length = (ulg)((long)s->strstart - s->block_start); +- int dcode; +- for (dcode = 0; dcode < D_CODES; dcode++) { +- out_length += (ulg)s->dyn_dtree[dcode].Freq * +- (5L+extra_dbits[dcode]); +- } +- out_length >>= 3; +- Tracev((stderr,"\nlast_lit %u, in %ld, out ~%ld(%ld%%) ", +- s->last_lit, in_length, out_length, +- 100L - out_length*100L/in_length)); +- if (s->matches < s->last_lit/2 && out_length < in_length/2) return 1; +- } +-#endif +- return (s->last_lit == s->lit_bufsize-1); +- /* We avoid equality with lit_bufsize because of wraparound at 64K +- * on 16 bit machines and because stored blocks are restricted to +- * 64K-1 bytes. +- */ ++ return (s->sym_next == s->sym_end); + } + + /* =========================================================================== +@@ -1069,13 +1047,14 @@ local void compress_block(s, ltree, dtree) + { + unsigned dist; /* distance of matched string */ + int lc; /* match length or unmatched char (if dist == 0) */ +- unsigned lx = 0; /* running index in l_buf */ ++ unsigned sx = 0; /* running index in sym_buf */ + unsigned code; /* the code to send */ + int extra; /* number of extra bits to send */ + +- if (s->last_lit != 0) do { +- dist = s->d_buf[lx]; +- lc = s->l_buf[lx++]; ++ if (s->sym_next != 0) do { ++ dist = s->sym_buf[sx++] & 0xff; ++ dist += (unsigned)(s->sym_buf[sx++] & 0xff) << 8; ++ lc = s->sym_buf[sx++]; + if (dist == 0) { + send_code(s, lc, ltree); /* send a literal byte */ + Tracecv(isgraph(lc), (stderr," '%c' ", lc)); +@@ -1100,11 +1079,10 @@ local void compress_block(s, ltree, dtree) + } + } /* literal or match pair ? */ + +- /* Check that the overlay between pending_buf and d_buf+l_buf is ok: */ +- Assert((uInt)(s->pending) < s->lit_bufsize + 2*lx, +- "pendingBuf overflow"); ++ /* Check that the overlay between pending_buf and sym_buf is ok: */ ++ Assert(s->pending < s->lit_bufsize + sx, "pendingBuf overflow"); + +- } while (lx < s->last_lit); ++ } while (sx < s->sym_next); + + send_code(s, END_BLOCK, ltree); + } +-- +2.33.1 + diff --git a/pkgs/development/libraries/zlib/CVE-2018-25032-2.patch b/pkgs/development/libraries/zlib/CVE-2018-25032-2.patch new file mode 100644 index 00000000000..dadc904a07f --- /dev/null +++ b/pkgs/development/libraries/zlib/CVE-2018-25032-2.patch @@ -0,0 +1,27 @@ +From 4346a16853e19b45787ce933666026903fb8f3f8 Mon Sep 17 00:00:00 2001 +From: Mark Adler <madler@alumni.caltech.edu> +Date: Tue, 17 Apr 2018 22:44:41 -0700 +Subject: [PATCH 2/2] Assure that the number of bits for deflatePrime() is + valid. + +--- + deflate.c | 3 ++- + 1 file changed, 2 insertions(+), 1 deletion(-) + +diff --git a/deflate.c b/deflate.c +index 19cba87..23aef18 100644 +--- a/deflate.c ++++ b/deflate.c +@@ -589,7 +589,8 @@ int ZEXPORT deflatePrime (strm, bits, value) + + if (deflateStateCheck(strm)) return Z_STREAM_ERROR; + s = strm->state; +- if (s->sym_buf < s->pending_out + ((Buf_size + 7) >> 3)) ++ if (bits < 0 || bits > 16 || ++ s->sym_buf < s->pending_out + ((Buf_size + 7) >> 3)) + return Z_BUF_ERROR; + do { + put = Buf_size - s->bi_valid; +-- +2.33.1 + diff --git a/pkgs/development/lua-modules/overrides.nix b/pkgs/development/lua-modules/overrides.nix index 656695d6910..b659bd9382a 100644 --- a/pkgs/development/lua-modules/overrides.nix +++ b/pkgs/development/lua-modules/overrides.nix @@ -295,7 +295,8 @@ with prev; buildInputs = [ pkgs.libuv ]; - nativeBuildInputs = [ pkgs.pkg-config pkgs.fixDarwinDylibNames pkgs.cmake ]; + nativeBuildInputs = [ pkgs.pkg-config pkgs.cmake ] + ++ pkgs.lib.optionals pkgs.stdenv.isDarwin [ pkgs.fixDarwinDylibNames ]; }; luv = prev.lib.overrideLuarocks prev.luv (drv: { diff --git a/pkgs/development/misc/msp430/mspds/binary.nix b/pkgs/development/misc/msp430/mspds/binary.nix index 2fc306f8e5f..967562580c6 100644 --- a/pkgs/development/misc/msp430/mspds/binary.nix +++ b/pkgs/development/misc/msp430/mspds/binary.nix @@ -17,7 +17,8 @@ in stdenv.mkDerivation rec { if stdenv.hostPlatform.isWindows then "MSP430${archPostfix}.dll" else "libmsp430${archPostfix}${stdenv.hostPlatform.extensions.sharedLibrary}"; - nativeBuildInputs = [ unzip autoPatchelfHook ]; + nativeBuildInputs = [ unzip ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ stdenv.cc.cc ]; installPhase = '' diff --git a/pkgs/development/mobile/androidenv/build-tools.nix b/pkgs/development/mobile/androidenv/build-tools.nix index 536a025d15b..641560f1992 100644 --- a/pkgs/development/mobile/androidenv/build-tools.nix +++ b/pkgs/development/mobile/androidenv/build-tools.nix @@ -2,8 +2,8 @@ deployAndroidPackage { inherit package os; - buildInputs = [ autoPatchelfHook makeWrapper ] ++ - lib.optionals (os == "linux") [ pkgs.glibc pkgs.zlib pkgs.ncurses5 pkgs_i686.glibc pkgs_i686.zlib pkgs_i686.ncurses5 pkgs.libcxx ]; + buildInputs = [ makeWrapper ] ++ + lib.optionals (os == "linux") [ autoPatchelfHook pkgs.glibc pkgs.zlib pkgs.ncurses5 pkgs_i686.glibc pkgs_i686.zlib pkgs_i686.ncurses5 pkgs.libcxx ]; patchInstructions = '' ${lib.optionalString (os == "linux") '' addAutoPatchelfSearchPath $packageBaseDir/lib diff --git a/pkgs/development/mobile/androidenv/platform-tools.nix b/pkgs/development/mobile/androidenv/platform-tools.nix index c39d966959a..52443486bbb 100644 --- a/pkgs/development/mobile/androidenv/platform-tools.nix +++ b/pkgs/development/mobile/androidenv/platform-tools.nix @@ -2,8 +2,7 @@ deployAndroidPackage { inherit package os; - buildInputs = [ autoPatchelfHook ] - ++ lib.optionals (os == "linux") [ pkgs.glibc pkgs.zlib pkgs.ncurses5 ]; + buildInputs = lib.optionals (os == "linux") [ autoPatchelfHook pkgs.glibc pkgs.zlib pkgs.ncurses5 ]; patchInstructions = lib.optionalString (os == "linux") '' addAutoPatchelfSearchPath $packageBaseDir/lib64 autoPatchelf --no-recurse $packageBaseDir/lib64 diff --git a/pkgs/development/ocaml-modules/bap/default.nix b/pkgs/development/ocaml-modules/bap/default.nix index ea009083e8d..2bf671c6a09 100644 --- a/pkgs/development/ocaml-modules/bap/default.nix +++ b/pkgs/development/ocaml-modules/bap/default.nix @@ -16,12 +16,12 @@ else stdenv.mkDerivation rec { pname = "ocaml${ocaml.version}-bap"; - version = "2.2.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "BinaryAnalysisPlatform"; repo = "bap"; rev = "v${version}"; - sha256 = "0c53sps6ba9n5cjdmapi8ylzlpcc11pksijp9swzlwgxyz5d276f"; + sha256 = "1xc8zfcwm40zihs3ajcrh2x32xd08qnygay03qy3qxhybr5hqngr"; }; sigs = fetchurl { @@ -62,6 +62,7 @@ stdenv.mkDerivation rec { ''; disableIda = "--disable-ida"; + disableGhidra = "--disable-ghidra"; patches = [ ./curses_is_ncurses.patch ]; @@ -69,7 +70,7 @@ stdenv.mkDerivation rec { substituteInPlace oasis/elf-loader --replace bitstring.ppx ppx_bitstring ''; - configureFlags = [ "--enable-everything ${disableIda}" "--with-llvm-config=${llvm.dev}/bin/llvm-config" ]; + configureFlags = [ "--enable-everything ${disableIda} ${disableGhidra}" "--with-llvm-config=${llvm.dev}/bin/llvm-config" ]; meta = with lib; { description = "Platform for binary analysis. It is written in OCaml, but can be used from other languages."; diff --git a/pkgs/development/ocaml-modules/bjack/default.nix b/pkgs/development/ocaml-modules/bjack/default.nix new file mode 100644 index 00000000000..fa03194bde4 --- /dev/null +++ b/pkgs/development/ocaml-modules/bjack/default.nix @@ -0,0 +1,25 @@ +{ lib, buildDunePackage, fetchFromGitHub, dune-configurator, libsamplerate, libjack2 }: + +buildDunePackage rec { + pname = "bjack"; + version = "0.1.6"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-bjack"; + rev = "v${version}"; + sha256 = "1gf31a8i9byp6npn0x6gydcickn6sf5dnzmqr2c1b9jn2nl7334c"; + }; + + buildInputs = [ dune-configurator ]; + propagatedBuildInputs = [ libsamplerate libjack2 ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-bjack"; + description = "Blocking API for the jack audio connection kit"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/ocaml-modules/brisk-reconciler/default.nix b/pkgs/development/ocaml-modules/brisk-reconciler/default.nix new file mode 100644 index 00000000000..65d5abd6f44 --- /dev/null +++ b/pkgs/development/ocaml-modules/brisk-reconciler/default.nix @@ -0,0 +1,33 @@ +{ buildDunePackage, fetchFromGitHub, lib, reason, ppxlib }: + +buildDunePackage rec { + pname = "brisk-reconciler"; + version = "unstable-2020-12-02"; + + src = fetchFromGitHub { + owner = "briskml"; + repo = "brisk-reconciler"; + rev = "c9d5c4cf5dd17ff2da994de2c3b0f34c72778f70"; + sha256 = "sha256-AAB4ZzBnwfwFXOAqX/sIT6imOl70F0YNMt96SWOOE9w="; + }; + + nativeBuildInputs = [ reason ]; + + buildInputs = [ + ppxlib + ]; + + meta = with lib; { + description = "React.js-like reconciler implemented in OCaml/Reason"; + longDescription = '' + Easily model any `tree-shaped state` with simple `stateful functions`. + + Definitions: + * tree-shaped state: Any tree shaped-state like the DOM tree, app navigation state, or even rich text document! + * stateful functions: Functions that maintain state over time. Imagine that you can take any variable in your function and manage its value over the function's invocation. Now, imagine that any function invocation really creates its own "instance" of the function which will track this state separately from other invocations of this function. + ''; + homepage = "https://github.com/briskml/brisk-reconciler"; + maintainers = with maintainers; [ superherointj ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/ocaml-modules/coin/default.nix b/pkgs/development/ocaml-modules/coin/default.nix index f2e0919bdee..0ff2ce94041 100644 --- a/pkgs/development/ocaml-modules/coin/default.nix +++ b/pkgs/development/ocaml-modules/coin/default.nix @@ -1,20 +1,19 @@ { buildDunePackage -, fetchzip +, fetchurl , findlib , lib -, menhir , ocaml , re }: buildDunePackage rec { pname = "coin"; - version = "0.1.3"; + version = "0.1.4"; minimalOCamlVersion = "4.03"; - src = fetchzip { - url = "https://github.com/mirage/coin/releases/download/v${version}/coin-v${version}.tbz"; - sha256 = "06bfidvglyp9hzvr2xwbdx8wf26is2xrzc31fldzjf5ab0vd076p"; + src = fetchurl { + url = "https://github.com/mirage/coin/releases/download/v${version}/coin-${version}.tbz"; + sha256 = "sha256:0069qqswd1ik5ay3d5q1v1pz0ql31kblfsnv0ax0z8jwvacp3ack"; }; postPatch = '' @@ -22,9 +21,7 @@ buildDunePackage rec { 'ocaml} -I ${findlib}/lib/ocaml/${ocaml.version}/site-lib ' ''; - useDune2 = true; - - nativeBuildInputs = [ menhir findlib ]; + nativeBuildInputs = [ findlib ]; buildInputs = [ re ]; strictDeps = true; diff --git a/pkgs/development/ocaml-modules/ctypes/default.nix b/pkgs/development/ocaml-modules/ctypes/default.nix index 833ea45a869..0558cf4a163 100644 --- a/pkgs/development/ocaml-modules/ctypes/default.nix +++ b/pkgs/development/ocaml-modules/ctypes/default.nix @@ -6,13 +6,13 @@ else stdenv.mkDerivation rec { pname = "ocaml${ocaml.version}-ctypes"; - version = "0.18.0"; + version = "0.20.0"; src = fetchFromGitHub { owner = "ocamllabs"; repo = "ocaml-ctypes"; rev = version; - sha256 = "sha256-eu5RAuPYC97IM4XUsUw3HQ1BJlEHQ+eBpsdUE6hd+Q8="; + sha256 = "sha256-fr60H/hiSVjEg11qM8LF1Y5CotS3FEyFdCcIh0A0uI4="; }; nativeBuildInputs = [ pkg-config ocaml findlib ]; diff --git a/pkgs/development/ocaml-modules/dssi/default.nix b/pkgs/development/ocaml-modules/dssi/default.nix new file mode 100644 index 00000000000..b8235cef969 --- /dev/null +++ b/pkgs/development/ocaml-modules/dssi/default.nix @@ -0,0 +1,25 @@ +{ lib, buildDunePackage, fetchFromGitHub, dune-configurator, ladspa, alsa-lib }: + +buildDunePackage rec { + pname = "dssi"; + version = "0.1.5"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-dssi"; + rev = "v${version}"; + sha256 = "1frbmx1aznwp60r6bkx1whqyr6mkflvd9ysmjg7s7b80mh0s4ix6"; + }; + + buildInputs = [ dune-configurator ]; + propagatedBuildInputs = [ ladspa alsa-lib ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-dssi"; + description = "Bindings for the DSSI API which provides audio synthesizers"; + license = licenses.gpl2Only; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/ocaml-modules/ffmpeg/base.nix b/pkgs/development/ocaml-modules/ffmpeg/base.nix index 77a6ef01ac9..5dc5f612fd3 100644 --- a/pkgs/development/ocaml-modules/ffmpeg/base.nix +++ b/pkgs/development/ocaml-modules/ffmpeg/base.nix @@ -1,7 +1,7 @@ { lib, fetchFromGitHub }: rec { - version = "1.1.0"; + version = "1.1.3"; useDune2 = true; @@ -9,7 +9,7 @@ rec { owner = "savonet"; repo = "ocaml-ffmpeg"; rev = "v${version}"; - sha256 = "13rc3d0n963a28my5ahv78r82rh450hvbsc74mb6ld0r9v210r0p"; + sha256 = "1l40dfc0v3wn2drfq0mclrc1lrlpycdjrkrw4knkwpsg0za68v4c"; }; meta = with lib; { diff --git a/pkgs/development/ocaml-modules/flex/default.nix b/pkgs/development/ocaml-modules/flex/default.nix new file mode 100644 index 00000000000..c9db2440e01 --- /dev/null +++ b/pkgs/development/ocaml-modules/flex/default.nix @@ -0,0 +1,22 @@ +{ buildDunePackage, fetchFromGitHub, lib, reason }: + +buildDunePackage rec { + pname = "flex"; + version = "unstable-2020-09-12"; + + src = fetchFromGitHub { + owner = "jordwalke"; + repo = "flex"; + rev = "6ff12fe4f96749ffd3c0ea3d9962742767937b4a"; + sha256 = "sha256-GomTOdlU5ZwElKK8CM4DEMr51YDIrFKmTxUCGMLL3c4="; + }; + + nativeBuildInputs = [ reason ]; + + meta = with lib; { + description = "Native Reason implementation of CSS Flexbox layout. An Yoga project port"; + homepage = "https://github.com/jordwalke/flex"; + maintainers = with maintainers; [ superherointj ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/ocaml-modules/frontc/default.nix b/pkgs/development/ocaml-modules/frontc/default.nix index c05422497ee..c4ec0908fb0 100644 --- a/pkgs/development/ocaml-modules/frontc/default.nix +++ b/pkgs/development/ocaml-modules/frontc/default.nix @@ -1,26 +1,19 @@ -{ stdenv, lib, fetchurl, fetchpatch, fetchFromGitHub, ocaml, findlib }: +{ lib, buildDunePackage, fetchFromGitHub, ocaml, menhir }: -let - meta_file = fetchurl { - url = "https://raw.githubusercontent.com/ocaml/opam-repository/3c191ae9356ca7b3b628f2707cfcb863db42480f/packages/FrontC/FrontC.3.4.1/files/META"; - sha256 = "0s2wsinycldk8y5p09xd0hsgbhckhy7bkghzl63bph6mwv64kq2d"; - }; -in - -stdenv.mkDerivation rec { - pname = "ocaml${ocaml.version}-FrontC"; - version = "3.4.1"; +buildDunePackage rec { + pname = "FrontC"; + version = "4.1.0"; src = fetchFromGitHub { owner = "BinaryAnalysisPlatform"; repo = "FrontC"; - rev = "V_${lib.replaceStrings ["."] ["_"] version}"; - sha256 = "1dq5nks0c9gsbr1m8k39m1bniawr5hqcy1r8x5px7naa95ch06ak"; + rev = "v${version}"; + sha256 = "1mi1vh4qgscnb470qwidccaqd068j1bqlz6pf6wddk21paliwnqb"; }; - nativeBuildInputs = [ ocaml findlib ]; + minimalOCamlVersion = "4.08"; - strictDeps = true; + nativeBuildInputs = [ menhir ]; meta = with lib; { inherit (src.meta) homepage; @@ -29,14 +22,4 @@ stdenv.mkDerivation rec { license = licenses.lgpl21; maintainers = [ maintainers.maurer ]; }; - - patches = [ (fetchpatch { - url = "https://raw.githubusercontent.com/ocaml/opam-repository/3c191ae9356ca7b3b628f2707cfcb863db42480f/packages/FrontC/FrontC.3.4.1/files/opam.patch"; - sha256 = "0v4f6740jbj1kxg1y03dzfa3x3gsrhv06wpzdj30gl4ki5fvj4hs"; - }) - ]; - - makeFlags = [ "PREFIX=$(out)" "OCAML_SITE=$(OCAMLFIND_DESTDIR)" ]; - - postInstall = "cp ${meta_file} $OCAMLFIND_DESTDIR/FrontC/META"; } diff --git a/pkgs/development/ocaml-modules/gen_js_api/default.nix b/pkgs/development/ocaml-modules/gen_js_api/default.nix new file mode 100644 index 00000000000..e0474cdac6a --- /dev/null +++ b/pkgs/development/ocaml-modules/gen_js_api/default.nix @@ -0,0 +1,41 @@ +{ buildDunePackage +, lib +, ppxlib +, fetchFromGitHub +, ojs +, js_of_ocaml-compiler +, nodejs +}: + +buildDunePackage rec { + pname = "gen_js_api"; + version = "1.0.9"; + + src = fetchFromGitHub { + owner = "LexiFi"; + repo = pname; + rev = "v${version}"; + sha256 = "1qx6if1avr484bl9x1h0cksdc6gqw5i4pwzdr27h46hppnnvi8y8"; + }; + + minimalOCamlVersion = "4.08"; + + propagatedBuildInputs = [ ojs ppxlib ]; + checkInputs = [ js_of_ocaml-compiler nodejs ]; + doCheck = true; + + meta = { + homepage = "https://github.com/LexiFi/gen_js_api"; + description = "Easy OCaml bindings for JavaScript libraries"; + longDescription = '' + gen_js_api aims at simplifying the creation of OCaml bindings for + JavaScript libraries. Authors of bindings write OCaml signatures for + JavaScript libraries and the tool generates the actual binding code with a + combination of implicit conventions and explicit annotations. + + gen_js_api is to be used with the js_of_ocaml compiler. + ''; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.bcc32 ]; + }; +} diff --git a/pkgs/development/ocaml-modules/gen_js_api/ojs.nix b/pkgs/development/ocaml-modules/gen_js_api/ojs.nix new file mode 100644 index 00000000000..722f9fa7f6e --- /dev/null +++ b/pkgs/development/ocaml-modules/gen_js_api/ojs.nix @@ -0,0 +1,21 @@ +{ buildDunePackage +, gen_js_api +}: + +buildDunePackage rec { + pname = "ojs"; + + inherit (gen_js_api) version src; + + doCheck = false; # checks depend on gen_js_api, which is a cycle + + minimalOCamlVersion = "4.08"; + + meta = { + inherit (gen_js_api.meta) homepage license maintainers; + description = "Runtime Library for gen_js_api generated libraries"; + longDescription = '' + To be used in conjunction with gen_js_api + ''; + }; +} diff --git a/pkgs/development/ocaml-modules/hacl-star/raw.nix b/pkgs/development/ocaml-modules/hacl-star/raw.nix index 58fa1eb0021..07e4d99344f 100644 --- a/pkgs/development/ocaml-modules/hacl-star/raw.nix +++ b/pkgs/development/ocaml-modules/hacl-star/raw.nix @@ -14,6 +14,9 @@ stdenv.mkDerivation rec { minimalOCamlVersion = "4.08"; + # strictoverflow is disabled because it breaks aarch64-darwin + hardeningDisable = [ "strictoverflow" ]; + postPatch = '' patchShebangs ./ ''; diff --git a/pkgs/development/ocaml-modules/ladspa/default.nix b/pkgs/development/ocaml-modules/ladspa/default.nix new file mode 100644 index 00000000000..b037a61a0fb --- /dev/null +++ b/pkgs/development/ocaml-modules/ladspa/default.nix @@ -0,0 +1,25 @@ +{ lib, buildDunePackage, fetchFromGitHub, dune-configurator, ladspaH }: + +buildDunePackage rec { + pname = "ladspa"; + version = "0.2.2"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-ladspa"; + rev = "v${version}"; + sha256 = "1y83infjaz9apzyvaaqw331zqdysmn3bpidfab061v3bczv4jzbz"; + }; + + buildInputs = [ dune-configurator ]; + propagatedBuildInputs = [ ladspaH ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-alsa"; + description = "Bindings for the LADSPA API which provides audio effects"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/ocaml-modules/lastfm/default.nix b/pkgs/development/ocaml-modules/lastfm/default.nix new file mode 100644 index 00000000000..41bdac459b3 --- /dev/null +++ b/pkgs/development/ocaml-modules/lastfm/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildDunePackage +, fetchFromGitHub +, pkg-config +, dune-configurator +, xmlplaylist +, ocaml_pcre +, ocamlnet +}: + +buildDunePackage rec { + pname = "lastfm"; + version = "0.3.3"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-lastfm"; + rev = "v${version}"; + sha256 = "1sz400ny9h7fs20k7600q475q164x49ba30ls3q9y35rhm3g2y2b"; + }; + + propagatedBuildInputs = [ xmlplaylist ocaml_pcre ocamlnet ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-lastfm"; + description = "OCaml API to lastfm radio and audioscrobbler"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/ocaml-modules/pure-splitmix/default.nix b/pkgs/development/ocaml-modules/pure-splitmix/default.nix new file mode 100644 index 00000000000..228f8ad8c48 --- /dev/null +++ b/pkgs/development/ocaml-modules/pure-splitmix/default.nix @@ -0,0 +1,22 @@ +{ lib, fetchFromGitHub, buildDunePackage }: + +buildDunePackage rec { + pname = "pure-splitmix"; + version = "0.3"; + + src = fetchFromGitHub { + owner = "Lysxia"; + repo = pname; + rev = version; + sha256 = "RUnsAB4hMV87ItCyGhc47bHGY1iOwVv9kco2HxnzqbU="; + }; + + doCheck = true; + + meta = with lib; { + homepage = "https://github.com/Lysxia/pure-splitmix"; + description = "Purely functional splittable PRNG"; + license = licenses.mit; + maintainers = [ maintainers.ulrikstrid ]; + }; +} diff --git a/pkgs/development/ocaml-modules/rebez/default.nix b/pkgs/development/ocaml-modules/rebez/default.nix new file mode 100644 index 00000000000..b82c2ba7482 --- /dev/null +++ b/pkgs/development/ocaml-modules/rebez/default.nix @@ -0,0 +1,22 @@ +{ buildDunePackage, fetchFromGitHub, lib, reason }: + +buildDunePackage rec { + pname = "rebez"; + version = "unstable-2019-06-20"; + + src = fetchFromGitHub { + owner = "jchavarri"; + repo = "rebez"; + rev = "03fa3b707abb28fdd710eb9e57ba40d9cd6ae163"; + sha256 = "sha256-khZSwtwW+mP/EvAvIZMQyOb6FgNR+gmzpBZoD9ZPkpY="; + }; + + nativeBuildInputs = [ reason ]; + + meta = with lib; { + description = "Cubic bezier implementation in Reason / OCaml"; + homepage = "https://github.com/jchavarri/rebez/"; + maintainers = with maintainers; [ superherointj ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/ocaml-modules/samplerate/default.nix b/pkgs/development/ocaml-modules/samplerate/default.nix new file mode 100644 index 00000000000..c101cfc0c27 --- /dev/null +++ b/pkgs/development/ocaml-modules/samplerate/default.nix @@ -0,0 +1,25 @@ +{ lib, buildDunePackage, fetchFromGitHub, dune-configurator, libsamplerate }: + +buildDunePackage rec { + pname = "samplerate"; + version = "0.1.6"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-samplerate"; + rev = "v${version}"; + sha256 = "0h0i9v9p9n2givv3wys8qrfi1i7vp8kq7lnkf14s7d3m4r8x4wrp"; + }; + + buildInputs = [ dune-configurator ]; + propagatedBuildInputs = [ libsamplerate ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-samplerate"; + description = "Interface for libsamplerate"; + license = licenses.bsd2; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/ocaml-modules/xmlplaylist/default.nix b/pkgs/development/ocaml-modules/xmlplaylist/default.nix new file mode 100644 index 00000000000..a3017257350 --- /dev/null +++ b/pkgs/development/ocaml-modules/xmlplaylist/default.nix @@ -0,0 +1,25 @@ +{ lib, buildDunePackage, fetchFromGitHub, dune-configurator, xmlm }: + +buildDunePackage rec { + pname = "xmlplaylist"; + version = "0.1.5"; + + useDune2 = true; + + src = fetchFromGitHub { + owner = "savonet"; + repo = "ocaml-xmlplaylist"; + rev = "v${version}"; + sha256 = "1x5lbwkr2ip00x8vyfbl8936yy79j138vx8a16ix7g9p2j5qsfcq"; + }; + + buildInputs = [ dune-configurator ]; + propagatedBuildInputs = [ xmlm ]; + + meta = with lib; { + homepage = "https://github.com/savonet/ocaml-xmlplaylist"; + description = "Module to parse various RSS playlist formats"; + license = licenses.lgpl21Only; + maintainers = with maintainers; [ dandellion ]; + }; +} diff --git a/pkgs/development/python-modules/Mako/default.nix b/pkgs/development/python-modules/Mako/default.nix index 4c16861823f..d7b350b9f96 100644 --- a/pkgs/development/python-modules/Mako/default.nix +++ b/pkgs/development/python-modules/Mako/default.nix @@ -1,23 +1,45 @@ { lib , buildPythonPackage +, pythonOlder , fetchPypi , isPyPy + +# propagates , markupsafe + +# extras: Babel +, Babel + +# tests , mock , pytestCheckHook }: buildPythonPackage rec { pname = "Mako"; - version = "1.1.6"; + version = "1.2.0"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "4e9e345a41924a954251b95b4b28e14a301145b544901332e658907a7464b6b2"; + sha256 = "sha256-mnx+kiuH2zaGIQz0nV12cDOkHUAQsoTnR2gskr3dizk="; + }; + + propagatedBuildInputs = [ + markupsafe + ]; + + passthru.extras-require = { + babel = [ + Babel + ]; }; - propagatedBuildInputs = [ markupsafe ]; - checkInputs = [ pytestCheckHook markupsafe mock ]; + checkInputs = [ + pytestCheckHook + mock + ] ++ passthru.extras-require.babel; disabledTests = lib.optionals isPyPy [ # https://github.com/sqlalchemy/mako/issues/315 @@ -29,6 +51,11 @@ buildPythonPackage rec { "test_bytestring_passthru" ]; + disabledTestPaths = [ + # lingua dependency is not packaged + "test/ext/test_linguaplugin.py" + ]; + meta = with lib; { description = "Super-fast templating language"; homepage = "https://www.makotemplates.org/"; diff --git a/pkgs/development/python-modules/add-trailing-comma/default.nix b/pkgs/development/python-modules/add-trailing-comma/default.nix index c38a4f06143..5b0131576cd 100644 --- a/pkgs/development/python-modules/add-trailing-comma/default.nix +++ b/pkgs/development/python-modules/add-trailing-comma/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "add-trailing-comma"; - version = "2.2.1"; + version = "2.2.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "asottile"; repo = pname; rev = "v${version}"; - sha256 = "RBOL4mM9VciHHNmCTlRBIoXqeln19MKYxgv9p6GCNvU="; + sha256 = "sha256-hJVVRhaElroZ1GVlbGK49gzts2tozLqp9xfoaPdbb3I="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aenum/default.nix b/pkgs/development/python-modules/aenum/default.nix index a360959a9a7..8ebed55e1bc 100644 --- a/pkgs/development/python-modules/aenum/default.nix +++ b/pkgs/development/python-modules/aenum/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "aenum"; - version = "3.1.8"; + version = "3.1.11"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "8dbe15f446eb8264b788dfeca163fb0a043d408d212152397dc11377b851e4ae"; + sha256 = "sha256-rtLCc1R65yoNXuhpcZwCpkPaFr9QfICVj6rcfgOOP3M="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/aesara/default.nix b/pkgs/development/python-modules/aesara/default.nix index 3e2e9cb2cf3..58a39422a3a 100644 --- a/pkgs/development/python-modules/aesara/default.nix +++ b/pkgs/development/python-modules/aesara/default.nix @@ -18,13 +18,13 @@ buildPythonPackage rec { pname = "aesara"; - version = "2.4.0"; + version = "2.5.3"; src = fetchFromGitHub { owner = "aesara-devs"; repo = "aesara"; - rev = "38d7a813646c1e350170c46bafade0e7d0e2427c"; - sha256 = "sha256-933bM15BZi4sTjnIOGAg5dc5tXVWQ9lFzktOtzj5DNQ="; + rev = "refs/tags/rel-${version}"; + sha256 = "sha256-20nc70gNdcGjtGxv2WxmYxmswNH8v7yGLkToP2iazjc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/afdko/default.nix b/pkgs/development/python-modules/afdko/default.nix index 3fc547ddf96..bbf8d555b5e 100644 --- a/pkgs/development/python-modules/afdko/default.nix +++ b/pkgs/development/python-modules/afdko/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "afdko"; - version = "3.7.1"; + version = "3.8.1"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "05hj2mw3ppfjaig5zdk5db9vfrbbq5gmv5rzggmvvrj0yyfpr0pd"; + sha256 = "sha256-BaSpw7TiBymCvoP0/z1zynWKQJH/PjbbGf85ZI9LOZw="; }; format = "pyproject"; @@ -40,12 +40,6 @@ buildPythonPackage rec { # Use antlr4 runtime from nixpkgs and link it dynamically ./use-dynamic-system-antlr4-runtime.patch - - # Fix compatibility with latest fonttools. - (fetchpatch { - url = "https://github.com/adobe-type-tools/afdko/commit/120752c50a562e4f6c12ff4be1e3bd96ed664e82.patch"; - sha256 = "RDGIpNAuCmK+zqZOeOK7ddCjr9BuqPpcnbnxdtoE48M="; - }) ]; # setup.py will always (re-)execute cmake in buildPhase diff --git a/pkgs/development/python-modules/aiobotocore/default.nix b/pkgs/development/python-modules/aiobotocore/default.nix index 01066c127be..df800eb4755 100644 --- a/pkgs/development/python-modules/aiobotocore/default.nix +++ b/pkgs/development/python-modules/aiobotocore/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "aiobotocore"; - version = "2.1.2"; + version = "2.2.0"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-AP1/Q8wEhNjtJ0/QvkkqoWp/6medvqlqYCu3IspMLSI="; + sha256 = "sha256-cTV5OcMCJnDXu5SDMZQUekTr/OJLFkPk5E/twe5zSbo="; }; # relax version constraints: aiobotocore works with newer botocore versions diff --git a/pkgs/development/python-modules/aiodiscover/default.nix b/pkgs/development/python-modules/aiodiscover/default.nix index dbc684281fb..f54ffc9d4ce 100644 --- a/pkgs/development/python-modules/aiodiscover/default.nix +++ b/pkgs/development/python-modules/aiodiscover/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiodiscover"; - version = "1.4.8"; + version = "1.4.9"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ts3PnL1ePWJHHaLuC0eQKqBOt+HeEeAayeVBAIhnUWs="; + sha256 = "sha256-KfNf09L8WF8Op+uVLRttROIgXpY79v0HfMv8b2qMSxE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aioftp/default.nix b/pkgs/development/python-modules/aioftp/default.nix index 83c5e986f09..56ac63bfc5f 100644 --- a/pkgs/development/python-modules/aioftp/default.nix +++ b/pkgs/development/python-modules/aioftp/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "aioftp"; - version = "0.20.1"; + version = "0.21.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-6p3n5tNNQrbwHqGRXYNL4+cf31Blx2e9elxX6/wxj/4="; + sha256 = "sha256-TwORfChymaB4k5Q3CAPjsPaTXiQdjyi7s2fCN5qTT5I="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiohomekit/default.nix b/pkgs/development/python-modules/aiohomekit/default.nix index b1938c88aa9..66f028cf1df 100644 --- a/pkgs/development/python-modules/aiohomekit/default.nix +++ b/pkgs/development/python-modules/aiohomekit/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aiohomekit"; - version = "0.7.16"; + version = "0.7.17"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,8 +20,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "Jc2k"; repo = pname; - rev = version; - sha256 = "sha256-dakxPhnI1m6KiOj6oQkfQ0UVA7NEBTHFGYnF6L6c8Ck="; + rev = "refs/tags/${version}"; + sha256 = "sha256-vgRiqA3xNvuw3nIzl45RXdmcbDW6OTxvReSH5SVcNEs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/aiotractive/default.nix b/pkgs/development/python-modules/aiotractive/default.nix index b7790751a58..f864dd35f1a 100644 --- a/pkgs/development/python-modules/aiotractive/default.nix +++ b/pkgs/development/python-modules/aiotractive/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "aiotractive"; - version = "0.5.3"; + version = "0.5.4"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "zhulik"; repo = pname; rev = "v${version}"; - sha256 = "1rkylzbxxy3p744q1iqcvpnkn12ra6ja16vhqzidn702n4h5377j"; + sha256 = "sha256-pcGUl8mq1O1QY5EPkNhWRLCKDn2FWAF9XymXkUXWEUk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/alembic/default.nix b/pkgs/development/python-modules/alembic/default.nix index a82cd5e258a..ea8f4d4d131 100644 --- a/pkgs/development/python-modules/alembic/default.nix +++ b/pkgs/development/python-modules/alembic/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "alembic"; - version = "1.7.6"; + version = "1.7.7"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-bAwF6XaKiW2AQ4fiCymYgP4BvFZIQkaw3/6AddbT2Ec="; + sha256 = "sha256-SWEkgXPq186KIe+z3jePE7g5jmYw+rDrJY3HSoryTFg="; }; propagatedBuildInputs = [ @@ -42,10 +42,6 @@ buildPythonPackage rec { pytest-xdist ]; - pytestFlagsArray = [ - "--numprocesses" "$NIX_BUILD_CORES" - ]; - meta = with lib; { homepage = "https://bitbucket.org/zzzeek/alembic"; description = "A database migration tool for SQLAlchemy"; diff --git a/pkgs/development/python-modules/amqp/default.nix b/pkgs/development/python-modules/amqp/default.nix index c23c1d012da..d226192164d 100644 --- a/pkgs/development/python-modules/amqp/default.nix +++ b/pkgs/development/python-modules/amqp/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "amqp"; - version = "5.0.9"; + version = "5.1.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Hl9wdCTlRAeMoZbnKuahSIfOdOAr0Sa+VLfAPJcb7xg="; + hash = "sha256-RGs+io68LOr9Qk/8qrHDU4MNSBYSVleO16ZUSOYB6+0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-lint/default.nix b/pkgs/development/python-modules/ansible-lint/default.nix index 503247580fb..37538088b22 100644 --- a/pkgs/development/python-modules/ansible-lint/default.nix +++ b/pkgs/development/python-modules/ansible-lint/default.nix @@ -57,10 +57,6 @@ buildPythonPackage rec { pytestCheckHook ]; - pytestFlagsArray = [ - "--numprocesses" "$NIX_BUILD_CORES" - ]; - preCheck = '' # ansible wants to write to $HOME and crashes if it can't export HOME=$(mktemp -d) diff --git a/pkgs/development/python-modules/ansible-runner/default.nix b/pkgs/development/python-modules/ansible-runner/default.nix index 0083362c753..706cde06b8b 100644 --- a/pkgs/development/python-modules/ansible-runner/default.nix +++ b/pkgs/development/python-modules/ansible-runner/default.nix @@ -5,6 +5,7 @@ , fetchPypi , mock , openssh +, pbr , pexpect , psutil , pytest-mock @@ -26,6 +27,10 @@ buildPythonPackage rec { hash = "sha256-2m5dD+gGDL5LnY7QbDYiGdu4GYu0C49WU29GZY2bnBo="; }; + nativeBuildInputs = [ + pbr + ]; + propagatedBuildInputs = [ ansible psutil diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index 11990e7d399..e0b5c696e31 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -13,7 +13,7 @@ , pythonOlder , pyyaml , requests -, requests_oauthlib +, requests-oauthlib , six , slixmpp }: @@ -41,7 +41,7 @@ buildPythonPackage rec { markdown pyyaml requests - requests_oauthlib + requests-oauthlib six ]; diff --git a/pkgs/development/python-modules/approvaltests/default.nix b/pkgs/development/python-modules/approvaltests/default.nix index ece87d1894e..a6c94f24442 100644 --- a/pkgs/development/python-modules/approvaltests/default.nix +++ b/pkgs/development/python-modules/approvaltests/default.nix @@ -1,36 +1,58 @@ -{ lib, buildPythonPackage, fetchFromGitHub +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder + +# propagates +, allpairspy , beautifulsoup4 , empty-files -, numpy , pyperclip , pytest + +# tests +, numpy +, pytestCheckHook }: buildPythonPackage rec { - version = "4.0.0"; + version = "5.0.0"; pname = "approvaltests"; + format = "setuptools"; + + disabled = pythonOlder "3.6.1"; # no tests included in PyPI tarball src = fetchFromGitHub { owner = "approvals"; repo = "ApprovalTests.Python"; rev = "v${version}"; - sha256 = "sha256-4dg5xTswqLFRBaZagKrkilCvsAnky9donb03MT/PiWM="; + sha256 = "sha256-ku8J1ccX6LZZitlAOgc3eNCdsFx/FP1nqtdgPJF/jRg="; }; propagatedBuildInputs = [ + allpairspy beautifulsoup4 empty-files - numpy pyperclip pytest ]; - postPatch = '' - substituteInPlace setup.py \ - --replace bs4 beautifulsoup4 \ - --replace "pyperclip==1.5.27" "pyperclip>=1.5.27" - ''; + checkInputs = [ + numpy + pytestCheckHook + ]; + + disabledTests = [ + # tests expects paths below ApprovalTests.Python directory + "test_received_filename" + "test_pytest_namer" + ]; + + pythonImportsCheck = [ + "approvaltests.approvals" + "approvaltests.reporters.generic_diff_reporter_factory" + ]; meta = with lib; { description = "Assertion/verification library to aid testing"; diff --git a/pkgs/development/python-modules/apsw/default.nix b/pkgs/development/python-modules/apsw/default.nix index 5adee7244dd..8ff78f7ad63 100644 --- a/pkgs/development/python-modules/apsw/default.nix +++ b/pkgs/development/python-modules/apsw/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "apsw"; - version = "3.37.0-r1"; + version = "3.38.1-r1"; format = "setuptools"; disabled = isPyPy; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "rogerbinns"; repo = "apsw"; rev = version; - sha256 = "0p6rlbk7p6hj5mbmk1a8phazw3ym6hf5103zkxzg4p1jgjgi0xpl"; + hash = "sha256-pbb6wCu1T1mPlgoydB1Y1AKv+kToGkdVUjiom2vTqf4="; }; buildInputs = [ @@ -43,11 +43,12 @@ buildPythonPackage rec { disabledTests = [ "testCursor" + "testdb" + "testLargeObjects" "testLoadExtension" "testShell" "testVFS" "testVFSWithWAL" - "testdb" ] ++ lib.optionals stdenv.isDarwin [ # This is https://github.com/rogerbinns/apsw/issues/277 but # because we use pytestCheckHook we need to blacklist the test diff --git a/pkgs/development/python-modules/asana/default.nix b/pkgs/development/python-modules/asana/default.nix index c7839f05147..d179f3f9490 100644 --- a/pkgs/development/python-modules/asana/default.nix +++ b/pkgs/development/python-modules/asana/default.nix @@ -1,37 +1,47 @@ -{ buildPythonPackage, pythonAtLeast, pytest, requests, requests_oauthlib, six -, fetchFromGitHub, responses, lib +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +, requests +, requests-oauthlib +, responses +, six }: buildPythonPackage rec { pname = "asana"; - version = "0.10.3"; + version = "0.10.9"; + format = "setuptools"; - # upstream reportedly doesn't support 3.7 yet, blocked on - # https://bugs.python.org/issue34226 - disabled = pythonAtLeast "3.7"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "asana"; repo = "python-asana"; rev = "v${version}"; - sha256 = "11nsfygcfpc2qb2gy4npi9w00cqfh88g7k3rsfq7xambz1zjdz1n"; + sha256 = "sha256-9gOkCMY15ChdhiFdzS0TjvWpVTKKEGt7XIcK6EhkSK8="; }; - checkInputs = [ pytest responses ]; - propagatedBuildInputs = [ requests requests_oauthlib six ]; + propagatedBuildInputs = [ + requests + requests-oauthlib + six + ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "requests_oauthlib >= 0.8.0, == 0.8.*" "requests_oauthlib>=0.8.0<2.0" - ''; + checkInputs = [ + pytestCheckHook + responses + ]; - checkPhase = '' - py.test tests - ''; + pythonImportsCheck = [ + "asana" + ]; meta = with lib; { description = "Python client library for Asana"; homepage = "https://github.com/asana/python-asana"; license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/asdf/default.nix b/pkgs/development/python-modules/asdf/default.nix index 5087884074d..658ec10a0ae 100644 --- a/pkgs/development/python-modules/asdf/default.nix +++ b/pkgs/development/python-modules/asdf/default.nix @@ -20,14 +20,14 @@ buildPythonPackage rec { pname = "asdf"; - version = "2.11.0"; + version = "2.11.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FEWXGSkneduhO9+YlzrZvpJHUsI7TeagVLwBdMEIRvw="; + hash = "sha256-1uDRoS9nyZCLPdbiAQBADoiwqaVBzj1NMpZXdJQYoxQ="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/asgiref/default.nix b/pkgs/development/python-modules/asgiref/default.nix index 5eea9a5579a..2ea9f4130f9 100644 --- a/pkgs/development/python-modules/asgiref/default.nix +++ b/pkgs/development/python-modules/asgiref/default.nix @@ -6,21 +6,31 @@ , pytest-asyncio , pytestCheckHook , pythonOlder +, fetchpatch }: buildPythonPackage rec { - version = "3.4.1"; + version = "3.5.0"; pname = "asgiref"; + format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "django"; repo = pname; rev = version; - sha256 = "sha256-aXD46qH5sTTmp0rlzQGLAN+MfIz1u6obCwtfqoIYgBA="; + sha256 = "sha256-eWDsd8iWK1C/X3t/fKAM1i4hyTM/daGTd8CDSgDTL/U="; }; + patches = [ + (fetchpatch { + name = "remove-sock-nonblock-in-tests.patch"; + url = "https://github.com/django/asgiref/commit/d451a724c93043b623e83e7f86743bbcd9a05c45.patch"; + sha256 = "0whdsn5isln4dqbqqngvsy4yxgaqgpnziz0cndj1zdxim8cdicj7"; + }) + ]; + propagatedBuildInputs = [ async-timeout ]; @@ -40,6 +50,6 @@ buildPythonPackage rec { description = "Reference ASGI adapters and channel layers"; homepage = "https://github.com/django/asgiref"; license = licenses.bsd3; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/astroid/default.nix b/pkgs/development/python-modules/astroid/default.nix index ab62a565ce6..539787403c6 100644 --- a/pkgs/development/python-modules/astroid/default.nix +++ b/pkgs/development/python-modules/astroid/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, pythonAtLeast , pythonOlder , isPyPy , lazy-object-proxy @@ -14,7 +15,7 @@ buildPythonPackage rec { pname = "astroid"; - version = "2.9.3"; # Check whether the version is compatible with pylint + version = "2.11.2"; # Check whether the version is compatible with pylint disabled = pythonOlder "3.6.2"; @@ -22,7 +23,7 @@ buildPythonPackage rec { owner = "PyCQA"; repo = pname; rev = "v${version}"; - sha256 = "1x77faggk1dgxy48ng31xj9h6p51w312kvk5zqgvd5f19nvznxyi"; + sha256 = "sha256-adnvJCchsMWQxsIlenndUb6Mw1MgCNAanZcTmssmsEc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -45,6 +46,9 @@ buildPythonPackage rec { disabledTests = [ # assert (1, 1) == (1, 16) "test_end_lineno_string" + ] ++ lib.optionals (pythonAtLeast "3.10") [ + # AssertionError: Lists differ: ['ABC[16 chars]yBase', 'Final', 'Generic', 'MyProtocol', 'Protocol', 'object'] != ['ABC[16 chars]yBase', 'Final', 'Generic', 'MyProtocol', 'object'] + "test_mro_typing_extensions" ]; passthru.tests = { diff --git a/pkgs/development/python-modules/astropy-extension-helpers/default.nix b/pkgs/development/python-modules/astropy-extension-helpers/default.nix index 90162d431ca..cb15acf8839 100644 --- a/pkgs/development/python-modules/astropy-extension-helpers/default.nix +++ b/pkgs/development/python-modules/astropy-extension-helpers/default.nix @@ -35,6 +35,11 @@ buildPythonPackage rec { "extension_helpers" ]; + disabledTests = [ + # https://github.com/astropy/extension-helpers/issues/43 + "test_write_if_different" + ]; + pythonImportsCheck = [ "extension_helpers" ]; diff --git a/pkgs/development/python-modules/astropy/default.nix b/pkgs/development/python-modules/astropy/default.nix index 6a61dd1009c..56d0cc766ad 100644 --- a/pkgs/development/python-modules/astropy/default.nix +++ b/pkgs/development/python-modules/astropy/default.nix @@ -19,7 +19,7 @@ let pname = "astropy"; - version = "5.0.1"; + version = "5.0.3"; in buildPythonPackage { inherit pname version; @@ -29,7 +29,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - sha256 = "sha256-Y4LN5qIFqgsWoNXmHAwBMevU8BdNbHPilk9L7hMqkCc="; + sha256 = "sha256-GxZOxV63HH8Pil8zVDOcWkLWEpg1ayFOT7n/JWqGgUc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/asttokens/default.nix b/pkgs/development/python-modules/asttokens/default.nix index 1e44ee8fa0e..3d78ae7690b 100644 --- a/pkgs/development/python-modules/asttokens/default.nix +++ b/pkgs/development/python-modules/asttokens/default.nix @@ -22,10 +22,10 @@ buildPythonPackage rec { propagatedBuildInputs = [ six - astroid ]; checkInputs = [ + astroid pytestCheckHook ]; @@ -34,6 +34,11 @@ buildPythonPackage rec { "test_slices" ]; + disabledTestPaths = [ + # incompatible with astroid 2.11.0, pins <= 2.5.3 + "tests/test_astroid.py" + ]; + pythonImportsCheck = [ "asttokens" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/async_generator/default.nix b/pkgs/development/python-modules/async_generator/default.nix index 6f6da10a87f..277616849e1 100644 --- a/pkgs/development/python-modules/async_generator/default.nix +++ b/pkgs/development/python-modules/async_generator/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pythonOlder -, pytest-asyncio , pytestCheckHook }: @@ -19,7 +18,6 @@ buildPythonPackage rec { }; checkInputs = [ - pytest-asyncio pytestCheckHook ]; diff --git a/pkgs/development/python-modules/asyncssh/default.nix b/pkgs/development/python-modules/asyncssh/default.nix index 3d00805537f..bb6ce96ea58 100644 --- a/pkgs/development/python-modules/asyncssh/default.nix +++ b/pkgs/development/python-modules/asyncssh/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "asyncssh"; - version = "2.10.0"; + version = "2.10.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-WF5JmDzHlXFB4D7p9IvRU2pepXFdCqHOnM4Ecobmaws="; + sha256 = "sha256-SZuDbPWKnxknrStaQMPL0N042+CNLfj6is1TjCj8j6k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/atlassian-python-api/default.nix b/pkgs/development/python-modules/atlassian-python-api/default.nix index 468dac55661..4ecf893c1b9 100755 --- a/pkgs/development/python-modules/atlassian-python-api/default.nix +++ b/pkgs/development/python-modules/atlassian-python-api/default.nix @@ -4,7 +4,7 @@ , deprecated , oauthlib , requests -, requests_oauthlib +, requests-oauthlib , six , pytestCheckHook , pythonOlder @@ -28,7 +28,7 @@ buildPythonPackage rec { deprecated oauthlib requests - requests_oauthlib + requests-oauthlib six ]; diff --git a/pkgs/development/python-modules/atom/default.nix b/pkgs/development/python-modules/atom/default.nix index 80e29932ee2..88cfc818e3b 100644 --- a/pkgs/development/python-modules/atom/default.nix +++ b/pkgs/development/python-modules/atom/default.nix @@ -1,19 +1,45 @@ -{ lib, buildPythonPackage, fetchPypi, future, cppy }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, setuptools-scm +, future +, cppy +, pytestCheckHook +}: buildPythonPackage rec { pname = "atom"; - version = "0.7.0"; + version = "0.8.0"; + format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "4055fbdeeb692d3d52c6e3c628d7513fc71f147920cac7d0da05b6dbb5ec8c8d"; + src = fetchFromGitHub { + owner = "nucleic"; + repo = pname; + rev = version; + hash = "sha256-Xby3QopKw7teShMi80RMG8YdhOOvfQb5vwOuFEUTxHQ="; }; - buildInputs = [ cppy ]; - propagatedBuildInputs = [ future ]; + SETUPTOOLS_SCM_PRETEND_VERSION = version; - # Tests not released to pypi - doCheck = true; + nativeBuildInputs = [ + setuptools-scm + ]; + + buildInputs = [ + cppy + ]; + + preCheck = '' + rm -rf atom + ''; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "atom.api" + ]; meta = with lib; { description = "Memory efficient Python objects"; diff --git a/pkgs/development/python-modules/aurorapy/default.nix b/pkgs/development/python-modules/aurorapy/default.nix index 17abcf0e9c4..7e59d9c8bc9 100644 --- a/pkgs/development/python-modules/aurorapy/default.nix +++ b/pkgs/development/python-modules/aurorapy/default.nix @@ -5,6 +5,7 @@ , pyserial , pytestCheckHook , pythonOlder +, six }: buildPythonPackage rec { @@ -28,6 +29,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook + six ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix index 285630db32e..49f18ebca49 100644 --- a/pkgs/development/python-modules/autobahn/default.nix +++ b/pkgs/development/python-modules/autobahn/default.nix @@ -23,14 +23,14 @@ buildPythonPackage rec { pname = "autobahn"; - version = "22.2.2"; + version = "22.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-YOH0xgKqzQUv/j1GrkC2t1+ChrPEaSLCE7UjFi5YwX4="; + sha256 = "sha256-WKiHx6GWuwjYtmJMs2lfSTqeXJ8A/TUNjW+Cm0f/kDY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/awscrt/default.nix b/pkgs/development/python-modules/awscrt/default.nix index ab689bda51e..cc43d411039 100644 --- a/pkgs/development/python-modules/awscrt/default.nix +++ b/pkgs/development/python-modules/awscrt/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.13.8"; + version = "0.13.9"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-n1ckAHU31Lo/CdhKxa4sOWuNLg565BB0XKcmpZovCMs="; + hash = "sha256-9XUzHfezr+bhQt6OKYiVEaCHqqWE6J7Y4Rj3MmaMAXA="; }; buildInputs = lib.optionals stdenv.isDarwin [ diff --git a/pkgs/development/python-modules/azure-core/default.nix b/pkgs/development/python-modules/azure-core/default.nix index fbff37fad37..260a40e9de8 100644 --- a/pkgs/development/python-modules/azure-core/default.nix +++ b/pkgs/development/python-modules/azure-core/default.nix @@ -15,19 +15,20 @@ }: buildPythonPackage rec { - version = "1.22.1"; + version = "1.23.1"; pname = "azure-core"; disabled = isPy27; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-S25AUmijO4cxB3lklc7D8vGx/+k1Ykzg+93/NtONOk0="; + sha256 = "sha256-KKAd+68KaBLE4qgtFkLqMJVqlznyW8d8myO5H06mjw8="; }; propagatedBuildInputs = [ requests six + typing-extensions ]; checkInputs = [ @@ -41,7 +42,6 @@ buildPythonPackage rec { pytest-asyncio pytestCheckHook trio - typing-extensions ]; # test server needs to be available @@ -57,6 +57,8 @@ buildPythonPackage rec { "response" "request" "timeout" + "test_sync_transport_short_read_download_stream" + "test_aio_transport_short_read_download_stream" # disable 8 tests failing on some darwin machines with errors: # azure.core.polling.base_polling.BadStatus: Invalid return status 403 for 'GET' operation # azure.core.exceptions.HttpResponseError: Operation returned an invalid status 'Forbidden' diff --git a/pkgs/development/python-modules/azure-keyvault-keys/default.nix b/pkgs/development/python-modules/azure-keyvault-keys/default.nix index 8ce81bc3d61..d9e37f1b882 100644 --- a/pkgs/development/python-modules/azure-keyvault-keys/default.nix +++ b/pkgs/development/python-modules/azure-keyvault-keys/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "azure-keyvault-keys"; - version = "4.5.0"; + version = "4.5.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-x1AhiARXZXcky3A+DJXoCrvkqsonlkgdrdr6es/VY3s="; + hash = "sha256-2ojnH+ySoU+1jOyIaKv366BAGI3Nzjac4QUK3RllhvY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix index 00e24a2d9f1..4a502ac65db 100644 --- a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "azure-mgmt-containerservice"; - version = "18.0.0"; + version = "19.0.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-b4AwcnSp6JOtG8VaBbUN7d/NIhHN2TPnyjzCUVhMOzg="; + sha256 = "sha256-UHkSUoNzXWomr4vczGRRXVJplVRfqDjwFczkOP2Jwsc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-core/default.nix b/pkgs/development/python-modules/azure-mgmt-core/default.nix index 6adca4c02c7..0a65dbfb7ec 100644 --- a/pkgs/development/python-modules/azure-mgmt-core/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-core/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchPypi , azure-core +, typing-extensions }: buildPythonPackage rec { @@ -16,6 +17,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ azure-core + typing-extensions ]; pythonNamespaces = "azure.mgmt"; diff --git a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix index eed367c2206..d26033c414f 100644 --- a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix @@ -5,18 +5,20 @@ , msrestazure , azure-common , azure-mgmt-core -, azure-mgmt-nspkg -, isPy3k +, pythonOlder }: buildPythonPackage rec { pname = "azure-mgmt-datafactory"; - version = "2.3.0"; + version = "2.4.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-pjBjFPkKhKd8XI6wmzX/rAssHINMzDAZa+XRqG/pLYo="; + hash = "sha256-oCDh7tWsBA6z/auQm3AtkRzT9IUrq8HJ+R//HDJ+1nw="; }; propagatedBuildInputs = [ @@ -24,8 +26,6 @@ buildPythonPackage rec { msrestazure azure-common azure-mgmt-core - ] ++ lib.optionals (!isPy3k) [ - azure-mgmt-nspkg ]; # has no tests diff --git a/pkgs/development/python-modules/azure-mgmt-msi/default.nix b/pkgs/development/python-modules/azure-mgmt-msi/default.nix index bf81b5e67c7..1f1a2dde376 100644 --- a/pkgs/development/python-modules/azure-mgmt-msi/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-msi/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { pname = "azure-mgmt-msi"; - version = "1.0.0"; + version = "6.0.0"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "0n4gbwk843z66hhpcp1kcrnwqkzygbbc2ma01r9asgfv4nmklvyl"; + sha256 = "sha256-RpmYeF6LRKqu0KrjNAFAaOGxyfPuK+TImOumP+FPX2w="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bcrypt/default.nix b/pkgs/development/python-modules/bcrypt/default.nix index d6347b17904..13fb25d0371 100644 --- a/pkgs/development/python-modules/bcrypt/default.nix +++ b/pkgs/development/python-modules/bcrypt/default.nix @@ -1,9 +1,19 @@ -{ lib, buildPythonPackage, isPyPy, fetchPypi, pythonOlder -, cffi, pycparser, mock, pytest, py, six }: +{ lib +, buildPythonPackage +, setuptools +, isPyPy +, fetchPypi +, pythonOlder +, cffi +, pytestCheckHook +, six +}: buildPythonPackage rec { - version = "3.2.0"; pname = "bcrypt"; + version = "3.2.0"; + format = "pyproject"; + disabled = pythonOlder "3.6"; src = fetchPypi { @@ -11,16 +21,31 @@ buildPythonPackage rec { sha256 = "5b93c1726e50a93a033c36e5ca7fdcd29a5c7395af50a6892f5d9e7c6cfbfb29"; }; - buildInputs = [ pycparser mock pytest py ]; + nativeBuildInputs = [ + setuptools + ]; + + propagatedBuildInputs = [ + six + cffi + ]; + + propagatedNativeBuildInputs = [ + cffi + ]; - propagatedBuildInputs = [ six ] ++ lib.optional (!isPyPy) cffi; + checkInputs = [ + pytestCheckHook + ]; - propagatedNativeBuildInputs = lib.optional (!isPyPy) cffi; + pythonImportsCheck = [ + "bcrypt" + ]; meta = with lib; { - maintainers = with maintainers; [ domenkozar ]; description = "Modern password hashing for your software and your servers"; - license = licenses.asl20; homepage = "https://github.com/pyca/bcrypt/"; + license = licenses.asl20; + maintainers = with maintainers; [ domenkozar ]; }; } diff --git a/pkgs/development/python-modules/beautifultable/default.nix b/pkgs/development/python-modules/beautifultable/default.nix index def8f207ee8..646cfe8af9a 100644 --- a/pkgs/development/python-modules/beautifultable/default.nix +++ b/pkgs/development/python-modules/beautifultable/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, wcwidth , pytestCheckHook }: @@ -15,6 +16,10 @@ buildPythonPackage rec { sha256 = "12ci6jy8qmbphsvzvj98466nlhclfzs0a0pmbsv3mf5bfcdwvbh7"; }; + propagatedBuildInputs = [ + wcwidth + ]; + checkInputs = [ pytestCheckHook ]; @@ -25,7 +30,7 @@ buildPythonPackage rec { meta = with lib; { description = "Python package for printing visually appealing tables"; - homepage = "https://github.com/CERT-Polska/mwdblib"; + homepage = "https://github.com/pri22296/beautifultable"; license = with licenses; [ mit ]; maintainers = with maintainers; [ fab ]; }; diff --git a/pkgs/development/python-modules/behave/default.nix b/pkgs/development/python-modules/behave/default.nix index 2384a51e502..5254f79c4b2 100644 --- a/pkgs/development/python-modules/behave/default.nix +++ b/pkgs/development/python-modules/behave/default.nix @@ -1,6 +1,6 @@ { lib, stdenv, fetchFromGitHub , buildPythonApplication, python -, pytestCheckHook, mock, pathpy, pyhamcrest, pytest-html +, pytestCheckHook, mock, path, pyhamcrest, pytest-html , glibcLocales , colorama, cucumber-tag-expressions, parse, parse-type, six }: @@ -16,7 +16,7 @@ buildPythonApplication rec { hash = "sha256-B8PUN1Q4UAsDWrHjPZDlpaPjCKjI/pAogCSI+BQnaWs="; }; - checkInputs = [ pytestCheckHook mock pathpy pyhamcrest pytest-html ]; + checkInputs = [ pytestCheckHook mock path pyhamcrest pytest-html ]; # upstream tests are failing, so instead we only check if we can import it doCheck = false; diff --git a/pkgs/development/python-modules/bitarray/default.nix b/pkgs/development/python-modules/bitarray/default.nix index be7f69fbd8d..d5806d77112 100644 --- a/pkgs/development/python-modules/bitarray/default.nix +++ b/pkgs/development/python-modules/bitarray/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "bitarray"; - version = "2.4.0"; + version = "2.4.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-8SA+kC1R3zGRfXfuupw/540DKHOirXjHN+JkIPAIDlg="; + sha256 = "sha256-+uygP5eemSzHb3QGr365eVyxEbjYlpyJGgMr10l8h9o="; }; checkPhase = '' diff --git a/pkgs/development/python-modules/bitstruct/default.nix b/pkgs/development/python-modules/bitstruct/default.nix index 78b34dfbf17..8279f0ac976 100644 --- a/pkgs/development/python-modules/bitstruct/default.nix +++ b/pkgs/development/python-modules/bitstruct/default.nix @@ -1,17 +1,28 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +}: buildPythonPackage rec { pname = "bitstruct"; - version = "8.12.1"; + version = "8.14.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "45b2b932ce6681f5c6ce8cba39abdd423b579b0568c76fa48b1e09c88368ede7"; + hash = "sha256-IwwZHHXxUm9pIs2wjqtvUsBVRS4iOb9WOPAunP04LJE="; }; + pythonImportsCheck = [ + "bitstruct" + ]; + meta = with lib; { - homepage = "https://github.com/eerimoq/bitstruct"; description = "Python bit pack/unpack package"; + homepage = "https://github.com/eerimoq/bitstruct"; license = licenses.mit; maintainers = with maintainers; [ jakewaksbaum ]; }; diff --git a/pkgs/development/python-modules/black/default.nix b/pkgs/development/python-modules/black/default.nix index 064fe8187ed..884629da0ff 100644 --- a/pkgs/development/python-modules/black/default.nix +++ b/pkgs/development/python-modules/black/default.nix @@ -23,13 +23,13 @@ buildPythonPackage rec { pname = "black"; - version = "22.1.0"; + version = "22.3.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-p8AZLTVjX2/BF0vldct5FekuXdYp7nn9rw3PpBqAr7U="; + hash = "sha256-NQILiIbAIs7ZKCtRtah1ttGrDDh7MaBluE23wzCFynk="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/blinker/default.nix b/pkgs/development/python-modules/blinker/default.nix index ca59a0d710a..53aaacbdf82 100644 --- a/pkgs/development/python-modules/blinker/default.nix +++ b/pkgs/development/python-modules/blinker/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, nose, pytestCheckHook }: +{ lib, buildPythonPackage, fetchPypi, nose }: buildPythonPackage rec { pname = "blinker"; @@ -9,13 +9,18 @@ buildPythonPackage rec { sha256 = "1dpq0vb01p36jjwbhhd08ylvrnyvcc82yxx3mwjx6awrycjyw6j7"; }; - checkInputs = [ nose pytestCheckHook ]; + checkInputs = [ nose ]; + + checkPhase = '' + nosetests + ''; + pythonImportsCheck = [ "blinker" ]; meta = with lib; { homepage = "https://pythonhosted.org/blinker/"; description = "Fast, simple object-to-object and broadcast signaling"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/boto3/default.nix b/pkgs/development/python-modules/boto3/default.nix index d1a104f6ae9..d849d49b64f 100644 --- a/pkgs/development/python-modules/boto3/default.nix +++ b/pkgs/development/python-modules/boto3/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "boto3"; - version = "1.21.12"; # N.B: if you change this, change botocore and awscli to a matching version + version = "1.21.30"; # N.B: if you change this, change botocore and awscli to a matching version src = fetchPypi { inherit pname version; - sha256 = "sha256-yS7CCmcHIbWhvAE7MFqE2yt/nHFmU7MFbOfi+9KhgO8="; + sha256 = "sha256-8K+PTvX+Y1PHlM08zmJ9Rpphi1is58p1pjz9cZ32Fc4="; }; propagatedBuildInputs = [ botocore jmespath s3transfer ] ++ lib.optionals (!isPy3k) [ futures ]; diff --git a/pkgs/development/python-modules/botocore/default.nix b/pkgs/development/python-modules/botocore/default.nix index 0c69de1c0e0..52b8d8d37fc 100644 --- a/pkgs/development/python-modules/botocore/default.nix +++ b/pkgs/development/python-modules/botocore/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "botocore"; - version = "1.24.12"; # N.B: if you change this, change boto3 and awscli to a matching version + version = "1.24.33"; # N.B: if you change this, change boto3 and awscli to a matching version src = fetchPypi { inherit pname version; - sha256 = "sha256-AXSZmgSwouQkVxBgk6zps2+pR3KkQtm89gdQJj0dBz4="; + sha256 = "sha256-6l/RgAggMKbDP6Gb8BHXKXDz7SPP/xtBQTBp4yV2gQM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/boxx/default.nix b/pkgs/development/python-modules/boxx/default.nix index dd521523179..964bf2dd812 100644 --- a/pkgs/development/python-modules/boxx/default.nix +++ b/pkgs/development/python-modules/boxx/default.nix @@ -18,11 +18,11 @@ buildPythonPackage rec { pname = "boxx"; - version = "0.9.10"; + version = "0.9.11"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Iw6jRhKAroqfWmbXhD7YTn4s8FrE/Iyd31EOP0tMdkQ="; + sha256 = "sha256-xB/bCSIzT0JF5ZPWqSn3P8soBJnzDTfCyan+iOrfWzw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/build/default.nix b/pkgs/development/python-modules/build/default.nix index f1f7f0e81bd..d36804649b7 100644 --- a/pkgs/development/python-modules/build/default.nix +++ b/pkgs/development/python-modules/build/default.nix @@ -52,8 +52,6 @@ buildPythonPackage rec { ]; pytestFlagsArray = [ - "-n" - "$NIX_BUILD_CORES" "-W" "ignore::DeprecationWarning" ]; diff --git a/pkgs/development/python-modules/buildbot/default.nix b/pkgs/development/python-modules/buildbot/default.nix index 5190c1fa74f..743c9f2c4b1 100644 --- a/pkgs/development/python-modules/buildbot/default.nix +++ b/pkgs/development/python-modules/buildbot/default.nix @@ -31,11 +31,11 @@ let package = buildPythonPackage rec { pname = "buildbot"; - version = "3.4.1"; + version = "3.5.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-GmKMqejHjtEiEtlZffze7PGNjVwUKB/ZcvUgJ4DoeDQ="; + sha256 = "sha256-woGHdCan5qTp00toNkWa821EgVQMrPK+OWXoqFcgIDQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/buildbot/pkg.nix b/pkgs/development/python-modules/buildbot/pkg.nix index a35506c89b8..a2cffd739d1 100644 --- a/pkgs/development/python-modules/buildbot/pkg.nix +++ b/pkgs/development/python-modules/buildbot/pkg.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "sha256-A2a5rEL5MN9jlu5vVnUIKx9ma2H6wuJAWjkqLpQgcfc="; + sha256 = "sha256-CYbMixfZZ1xypV0J7TW54n/fja9RGMlWiF7StJYFnqM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/buildbot/plugins.nix b/pkgs/development/python-modules/buildbot/plugins.nix index 5b64f4c51ab..62aa51e053d 100644 --- a/pkgs/development/python-modules/buildbot/plugins.nix +++ b/pkgs/development/python-modules/buildbot/plugins.nix @@ -7,7 +7,7 @@ src = fetchPypi { inherit pname version; - sha256 = "sha256-Hly1dwUbWblHoP+ufjxyz4boXby8kxeFSHLMHcCpc1o="; + sha256 = "sha256-boa/MWi/HAhNU3/n96i0fuoQ+jT5I+dWoe1Zd7f/Yvs="; }; # Remove unneccessary circular dependency on buildbot @@ -34,7 +34,7 @@ src = fetchPypi { inherit pname version; - sha256 = "sha256-QuV808Wg9epCgjehuUaMKCLLTLfFJVWBdKPy8sZfBYg="; + sha256 = "sha256-NUDTwgkQuasOlJxNTlvfIm99LNVCrRIdBmgeJnwkSU8="; }; buildInputs = [ buildbot-pkg ]; @@ -56,7 +56,7 @@ src = fetchPypi { inherit pname version; - sha256 = "sha256-p8PRQaWrPb63RrF4FtTX65qM3HdzI4Gl4tR0zTOBFEI="; + sha256 = "sha256-EmiIDCG4iFIwFnwii8fjII7C7wsBifzeZeW7HyY04dE="; }; buildInputs = [ buildbot-pkg ]; @@ -78,7 +78,7 @@ src = fetchPypi { inherit pname version; - sha256 = "sha256-cNYptEp98padbyoY1DmZbpaED7O5pfck9oMjst4RHnI="; + sha256 = "sha256-QcS8QJ17uzDvkynTczj05LojuIT6feGiQNCwCESbVLw="; }; buildInputs = [ buildbot-pkg ]; @@ -100,7 +100,7 @@ src = fetchPypi { inherit pname version; - sha256 = "sha256-o747SIyqJom4ucZ7hmODcP0VC7i+ydgvi+oMxn/vupc="; + sha256 = "sha256-U9ecRxpDowzjD4GsrW4FUHcbNaWeAFGKDlqMrbIoTrQ="; }; buildInputs = [ buildbot-pkg ]; diff --git a/pkgs/development/python-modules/buildbot/worker.nix b/pkgs/development/python-modules/buildbot/worker.nix index 97a3eec770b..8c5319868ce 100644 --- a/pkgs/development/python-modules/buildbot/worker.nix +++ b/pkgs/development/python-modules/buildbot/worker.nix @@ -1,5 +1,26 @@ -{ lib, buildPythonPackage, fetchPypi, buildbot, setuptoolsTrial, mock, twisted, - future, coreutils, nixosTests }: +{ lib +, buildPythonPackage +, fetchPypi +, buildbot + +# patch +, coreutils + +# propagates +, autobahn +, future +, msgpack +, twisted + +# tests +, mock +, parameterized +, psutil +, setuptoolsTrial + +# passthru +, nixosTests +}: buildPythonPackage (rec { pname = "buildbot-worker"; @@ -7,18 +28,31 @@ buildPythonPackage (rec { src = fetchPypi { inherit pname version; - sha256 = "sha256-9wdUvp00vuP7peJ+Oo4guHLfIz0YWHwp6q/zlKOOoXg="; + sha256 = "sha256-HZH3TdH5dhr3f6ev25O3SgPPNbiFGMmAp9DHwcb/2MA="; }; - propagatedBuildInputs = [ twisted future ]; - - checkInputs = [ setuptoolsTrial mock ]; - postPatch = '' substituteInPlace buildbot_worker/scripts/logwatcher.py \ --replace /usr/bin/tail "${coreutils}/bin/tail" ''; + nativeBuildInputs = [ + setuptoolsTrial + ]; + + propagatedBuildInputs = [ + autobahn + future + msgpack + twisted + ]; + + checkInputs = [ + mock + parameterized + psutil + ]; + passthru.tests = { smoke-test = nixosTests.buildbot; }; diff --git a/pkgs/development/python-modules/casbin/default.nix b/pkgs/development/python-modules/casbin/default.nix index 12ea06a5c4f..433b7644e7a 100644 --- a/pkgs/development/python-modules/casbin/default.nix +++ b/pkgs/development/python-modules/casbin/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "casbin"; - version = "1.15.4"; + version = "1.15.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,8 +17,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = pname; repo = "pycasbin"; - rev = "v${version}"; - sha256 = "0vczml14dvvrj401r08d6b0rfn5p5kfm1wr0vrfi8rqk2z5x1w0g"; + rev = "refs/tags/v${version}"; + sha256 = "sha256-7q9zTuqdIUAiipA5kh8CwQa/TeiXGsKuGGvYYwTjObw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cattrs/default.nix b/pkgs/development/python-modules/cattrs/default.nix index 94a357df98b..69a351e3c34 100644 --- a/pkgs/development/python-modules/cattrs/default.nix +++ b/pkgs/development/python-modules/cattrs/default.nix @@ -52,9 +52,6 @@ buildPythonPackage rec { ujson ]; - pytestFlagsArray = [ - "--numprocesses $NIX_BUILD_CORES" - ]; postPatch = '' substituteInPlace pyproject.toml \ diff --git a/pkgs/development/python-modules/cffi/default.nix b/pkgs/development/python-modules/cffi/default.nix index a65cd297f43..22d2e87cd27 100644 --- a/pkgs/development/python-modules/cffi/default.nix +++ b/pkgs/development/python-modules/cffi/default.nix @@ -19,11 +19,12 @@ if isPyPy then null else buildPythonPackage rec { propagatedBuildInputs = [ pycparser ]; - prePatch = lib.optionalString stdenv.isDarwin '' + postPatch = lib.optionalString stdenv.isDarwin '' # Remove setup.py impurities - substituteInPlace setup.py --replace "'-iwithsysroot/usr/include/ffi'" "" - substituteInPlace setup.py --replace "'/usr/include/ffi'," "" - substituteInPlace setup.py --replace '/usr/include/libffi' '${lib.getDev libffi}/include' + substituteInPlace setup.py \ + --replace "'-iwithsysroot/usr/include/ffi'" "" \ + --replace "'/usr/include/ffi'," "" \ + --replace '/usr/include/libffi' '${lib.getDev libffi}/include' ''; # The tests use -Werror but with python3.6 clang detects some unreachable code. diff --git a/pkgs/development/python-modules/chalice/default.nix b/pkgs/development/python-modules/chalice/default.nix index 93499d0f563..d309bc71731 100644 --- a/pkgs/development/python-modules/chalice/default.nix +++ b/pkgs/development/python-modules/chalice/default.nix @@ -62,7 +62,7 @@ buildPythonPackage rec { sed -i setup.py -e "/pip>=/c\'pip'," substituteInPlace setup.py \ --replace "typing==3.6.4" "typing" \ - --replace "attrs>=19.3.0,<21.3.0" "attrs" + --replace "jmespath>=0.9.3,<1.0.0" "jmespath>=0.9.3,<2.0.0" ''; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/cherrypy/default.nix b/pkgs/development/python-modules/cherrypy/default.nix index 01bbfe8841b..f4272f90d62 100644 --- a/pkgs/development/python-modules/cherrypy/default.nix +++ b/pkgs/development/python-modules/cherrypy/default.nix @@ -6,7 +6,7 @@ , jaraco_collections , more-itertools , objgraph -, pathpy +, path , portend , pytest-forked , pytest-services @@ -51,7 +51,7 @@ buildPythonPackage rec { checkInputs = [ objgraph - pathpy + path pytest-forked pytest-services pytestCheckHook diff --git a/pkgs/development/python-modules/ckcc-protocol/default.nix b/pkgs/development/python-modules/ckcc-protocol/default.nix index 670e4a3c923..e2a8ebd9776 100644 --- a/pkgs/development/python-modules/ckcc-protocol/default.nix +++ b/pkgs/development/python-modules/ckcc-protocol/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "ckcc-protocol"; - version = "1.3.0"; + version = "1.3.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-UVLKJHDPxi9ivY3JyIySmce0NUhxIIlIxVTdPoXMaKM="; + sha256 = "sha256-5wsVg7GX/9UygzpGI6DwrkAvexgcOmJyuv8GXiPPWvk="; }; propagatedBuildInputs = [ click ecdsa hidapi pyaes ]; diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index 9816ff3782b..b1650577149 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -8,6 +8,7 @@ , pysmt , pythonOlder , pytestCheckHook +, six , z3 }: @@ -36,6 +37,7 @@ buildPythonPackage rec { checkInputs = [ nose pytestCheckHook + six ]; postPatch = '' diff --git a/pkgs/development/python-modules/click-log/default.nix b/pkgs/development/python-modules/click-log/default.nix index 3145d4775e3..c0b8c89ea64 100644 --- a/pkgs/development/python-modules/click-log/default.nix +++ b/pkgs/development/python-modules/click-log/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "click-log"; - version = "0.3.2"; + version = "0.4.0"; src = fetchPypi { inherit pname version; - sha256 = "16fd1ca3fc6b16c98cea63acf1ab474ea8e676849dc669d86afafb0ed7003124"; + sha256 = "sha256-OXD4VwrFRJEje82z2KtePu9sBX3yn4w9EVGlGpwjuXU="; }; propagatedBuildInputs = [ click ]; diff --git a/pkgs/development/python-modules/click/default.nix b/pkgs/development/python-modules/click/default.nix index 5156ad1048f..a75f563862a 100644 --- a/pkgs/development/python-modules/click/default.nix +++ b/pkgs/development/python-modules/click/default.nix @@ -3,7 +3,6 @@ , pythonOlder , fetchPypi , importlib-metadata -, locale , pytestCheckHook # large-rebuild downstream dependencies @@ -17,18 +16,14 @@ buildPythonPackage rec { pname = "click"; - version = "8.0.4"; + version = "8.1.2"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-hFjXsSh8X7EoyQ4jOBz5nc3nS+r2x/9jhM6E1v4JCts="; + sha256 = "sha256-R5cH/hTZ7JoHV2GLehAKCuTE4jb6xbf4DKaAKBQaGnI="; }; - postPatch = '' - substituteInPlace src/click/_unicodefun.py \ - --replace '"locale"' "'${locale}/bin/locale'" - ''; - propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [ importlib-metadata ]; diff --git a/pkgs/development/python-modules/clickhouse-driver/default.nix b/pkgs/development/python-modules/clickhouse-driver/default.nix index dd1698f9a3a..826ce08c1e0 100644 --- a/pkgs/development/python-modules/clickhouse-driver/default.nix +++ b/pkgs/development/python-modules/clickhouse-driver/default.nix @@ -57,8 +57,6 @@ buildPythonPackage rec { # some test in test_buffered_reader.py doesn't seem to return disabledTestPaths = [ "tests/test_buffered_reader.py" ]; - pytestFlagsArray = [ "-n" "$NIX_BUILD_CORES" ]; - # most tests require `clickhouse` # TODO: enable tests after `clickhouse` unbroken doCheck = false; diff --git a/pkgs/development/python-modules/clize/default.nix b/pkgs/development/python-modules/clize/default.nix index 75c4513d1e3..10b4c8f68c6 100644 --- a/pkgs/development/python-modules/clize/default.nix +++ b/pkgs/development/python-modules/clize/default.nix @@ -1,12 +1,18 @@ { lib , buildPythonPackage , fetchPypi -, python-dateutil + +# propagtes , sigtools , six , attrs , od , docutils + +# extras: datetime +, python-dateutil + +# tests , pygments , unittest2 , pytestCheckHook @@ -21,6 +27,25 @@ buildPythonPackage rec { sha256 = "3177a028e4169d8865c79af82bdd441b24311d4bd9c0ae8803641882d340a51d"; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "docutils ~= 0.17.0" "docutils" + ''; + + propagatedBuildInputs = [ + attrs + docutils + od + sigtools + six + ]; + + passthru.extras-require = { + datetime = [ + python-dateutil + ]; + }; + # repeated_test no longer exists in nixpkgs # also see: https://github.com/epsy/clize/issues/74 doCheck = false; @@ -31,14 +56,6 @@ buildPythonPackage rec { unittest2 ]; - propagatedBuildInputs = [ - attrs - docutils - od - sigtools - six - ]; - pythonImportsCheck = [ "clize" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/commoncode/default.nix b/pkgs/development/python-modules/commoncode/default.nix index ff642c8930e..b6c5f02fb8e 100644 --- a/pkgs/development/python-modules/commoncode/default.nix +++ b/pkgs/development/python-modules/commoncode/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "commoncode"; - version = "30.0.0"; + version = "30.1.1"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-6SeU4u6pfDuGCgCYAO5fdbWBxW9XN3WvM8j6DwUlFwM="; + sha256 = "sha256-KymdX+5CAYSRpOwpqQ1DMCFWqkeMAmOHjVnBZTji76I="; }; postPatch = '' diff --git a/pkgs/development/python-modules/cppy/default.nix b/pkgs/development/python-modules/cppy/default.nix index fffa9174424..5b7e092c42a 100644 --- a/pkgs/development/python-modules/cppy/default.nix +++ b/pkgs/development/python-modules/cppy/default.nix @@ -1,23 +1,28 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k +, pythonOlder +, pytestCheckHook +, setuptools-scm }: buildPythonPackage rec { pname = "cppy"; - version = "1.1.0"; + version = "1.2.1"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "4eda6f1952054a270f32dc11df7c5e24b259a09fddf7bfaa5f33df9fb4a29642"; + sha256 = "sha256-g7Q78XsQhawVxd69tCFU8Ti5KCNLIURzWJgfadDW/hs="; }; - # Headers-only library, no tests - doCheck = false; + nativeBuildInputs = [ + setuptools-scm + ]; - # Not supported - disabled = !isPy3k; + checkInputs = [ pytestCheckHook ]; + + pythonImportsCheck = [ "cppy" ]; meta = { description = "C++ headers for C extension development"; diff --git a/pkgs/development/python-modules/cryptography/default.nix b/pkgs/development/python-modules/cryptography/default.nix index b4a79137d59..b4048366ed5 100644 --- a/pkgs/development/python-modules/cryptography/default.nix +++ b/pkgs/development/python-modules/cryptography/default.nix @@ -1,16 +1,17 @@ -{ lib, stdenv +{ lib +, stdenv +, callPackage , buildPythonPackage , fetchPypi , rustPlatform , setuptools-rust , openssl -, cryptography_vectors -, darwin +, Security , packaging , six , isPyPy , cffi -, pytest +, pytestCheckHook , pytest-subtests , pretend , libiconv @@ -19,20 +20,23 @@ , hypothesis }: +let + cryptography-vectors = callPackage ./vectors.nix { }; +in buildPythonPackage rec { pname = "cryptography"; - version = "36.0.0"; # Also update the hash in vectors.nix + version = "36.0.2"; # Also update the hash in vectors.nix src = fetchPypi { inherit pname version; - sha256 = "0zshc1jaavykdnic5ns8zax6gqganys6gp5f35bqcfggnkn6kxsj"; + sha256 = "sha256-cPj097sqyfNAZVy6yJ1oxSevW7Q4dSKoQT6EHj5mKMk="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; sourceRoot = "${pname}-${version}/${cargoRoot}"; name = "${pname}-${version}"; - sha256 = "1nbw4cfshyc125jwdivg9gxy52qcd1iz31lypl95ij9bn1dyx933"; + sha256 = "sha256-6C4N445h4Xf2nCc9rJWpSZaNPilR9GfgbmKvNlSIFqg="; }; cargoRoot = "src/rust"; @@ -47,37 +51,31 @@ buildPythonPackage rec { ] ++ (with rustPlatform; [ rust.cargo rust.rustc ]); buildInputs = [ openssl ] - ++ lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.Security libiconv ]; - propagatedBuildInputs = [ - packaging - six - ] ++ lib.optionals (!isPyPy) [ + ++ lib.optionals stdenv.isDarwin [ Security libiconv ]; + + propagatedBuildInputs = lib.optionals (!isPyPy) [ cffi ]; checkInputs = [ - cryptography_vectors + cryptography-vectors hypothesis iso8601 pretend - pytest + pytestCheckHook pytest-subtests pytz ]; - pytestFlags = lib.concatStringsSep " " ([ + pytestFlagsArray = [ "--disable-pytest-warnings" - ] ++ - lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ - # aarch64-darwin forbids W+X memory, but this tests depends on it: - # * https://cffi.readthedocs.io/en/latest/using.html#callbacks - "--ignore=tests/hazmat/backends/test_openssl_memleak.py" - ] - ); + ]; - checkPhase = '' - py.test ${pytestFlags} tests - ''; + disabledTestPaths = lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + # aarch64-darwin forbids W+X memory, but this tests depends on it: + # * https://cffi.readthedocs.io/en/latest/using.html#callbacks + "tests/hazmat/backends/test_openssl_memleak.py" + ]; meta = with lib; { description = "A package which provides cryptographic recipes and primitives"; @@ -92,6 +90,6 @@ buildPythonPackage rec { changelog = "https://cryptography.io/en/latest/changelog/#v" + replaceStrings [ "." ] [ "-" ] version; license = with licenses; [ asl20 bsd3 psfl ]; - maintainers = with maintainers; [ primeos ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/cryptography/vectors.nix b/pkgs/development/python-modules/cryptography/vectors.nix index 577c2c87091..99372090726 100644 --- a/pkgs/development/python-modules/cryptography/vectors.nix +++ b/pkgs/development/python-modules/cryptography/vectors.nix @@ -1,23 +1,26 @@ { buildPythonPackage, fetchPypi, lib, cryptography }: buildPythonPackage rec { - pname = "cryptography_vectors"; - # The test vectors must have the same version as the cryptography package: - version = cryptography.version; + pname = "cryptography-vectors"; + # The test vectors must have the same version as the cryptography package + inherit (cryptography) version; src = fetchPypi { - inherit pname version; - sha256 = "19gs051jbsixxwhlfs4xdxpzg8w1vypzpz3w56bp9x01qwzfbdy6"; + pname = "cryptography_vectors"; + inherit version; + sha256 = "sha256-KnkkRJoDAl+vf4dUpvQgAAHKshBzSmzmrB9r2s06aOQ="; }; # No tests included doCheck = false; + pythonImportsCheck = [ "cryptography_vectors" ]; + meta = with lib; { description = "Test vectors for the cryptography package"; homepage = "https://cryptography.io/en/latest/development/test-vectors/"; # Source: https://github.com/pyca/cryptography/tree/master/vectors; license = with licenses; [ asl20 bsd3 ]; - maintainers = with maintainers; [ primeos ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix index 34acc734253..c8a2eefed24 100644 --- a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix +++ b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "cyclonedx-python-lib"; - version = "2.2.0"; + version = "2.3.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -26,8 +26,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "CycloneDX"; repo = pname; - rev = "v${version}"; - hash = "sha256-QylA3bf0P65prR74H5+Sm51xWjjhOYpe4jHX7m/f6mI="; + rev = "refs/tags/v${version}"; + hash = "sha256-eZy+m6AkSlZM/i64FyFL+ZgeW86MOSM6sDYPT4ckaHE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dask/default.nix b/pkgs/development/python-modules/dask/default.nix index ffdca65a606..79f07c6e88f 100644 --- a/pkgs/development/python-modules/dask/default.nix +++ b/pkgs/development/python-modules/dask/default.nix @@ -67,8 +67,6 @@ buildPythonPackage rec { ''; pytestFlagsArray = [ - # parallelize - "--numprocesses $NIX_BUILD_CORES" # rerun failed tests up to three times "--reruns 3" # don't run tests that require network access diff --git a/pkgs/development/python-modules/datasette/default.nix b/pkgs/development/python-modules/datasette/default.nix index f2a0d531a0a..18c6943d1e6 100644 --- a/pkgs/development/python-modules/datasette/default.nix +++ b/pkgs/development/python-modules/datasette/default.nix @@ -32,7 +32,7 @@ buildPythonPackage rec { pname = "datasette"; version = "0.61.1"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "simonw"; @@ -41,6 +41,17 @@ buildPythonPackage rec { sha256 = "sha256-HVzMyF4ujYK12UQ25il/XROPo+iBldsMxOTx+duoc5o="; }; + postPatch = '' + substituteInPlace setup.py \ + --replace '"pytest-runner"' "" \ + --replace "click>=7.1.1,<8.1.0" "click>=7.1.1,<8.2.0" \ + --replace "click-default-group~=1.2.2" "click-default-group" \ + --replace "hupper~=1.9" "hupper" \ + --replace "Jinja2>=2.10.3,<3.1.0" "Jinja2" \ + --replace "pint~=0.9" "pint" \ + --replace "uvicorn~=0.11" "uvicorn" + ''; + propagatedBuildInputs = [ aiofiles asgi-csrf @@ -70,17 +81,6 @@ buildPythonPackage rec { trustme ]; - postConfigure = '' - substituteInPlace setup.py \ - --replace '"pytest-runner"' "" - substituteInPlace setup.py \ - --replace "click-default-group~=1.2.2" "click-default-group" \ - --replace "hupper~=1.9" "hupper" \ - --replace "pint~=0.9" "pint" \ - --replace "pluggy~=0.13.0" "pluggy" \ - --replace "uvicorn~=0.11" "uvicorn" \ - ''; - # takes 30-180 mins to run entire test suite, not worth the CPU resources, slows down reviews # with pytest-xdist, it still takes around 10 mins with 32 cores # just run the csv tests, as this should give some indictation of correctness diff --git a/pkgs/development/python-modules/datashader/default.nix b/pkgs/development/python-modules/datashader/default.nix index 152582f6716..b9630aa07fd 100644 --- a/pkgs/development/python-modules/datashader/default.nix +++ b/pkgs/development/python-modules/datashader/default.nix @@ -70,7 +70,6 @@ buildPythonPackage rec { ''; pytestFlagsArray = [ - "-n $NIX_BUILD_CORES" "datashader" ]; diff --git a/pkgs/development/python-modules/dateparser/default.nix b/pkgs/development/python-modules/dateparser/default.nix index 467ed5184c1..7f92077c0c7 100644 --- a/pkgs/development/python-modules/dateparser/default.nix +++ b/pkgs/development/python-modules/dateparser/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "dateparser"; - version = "1.1.0"; + version = "1.1.1"; disabled = !isPy3k; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "scrapinghub"; repo = "dateparser"; rev = "v${version}"; - sha256 = "sha256-RpQWDsj7vGtfu6wf4yETdswfXDfoTkburTl6aOA03Ww="; + sha256 = "sha256-bDup3q93Zq+pvwsy/lQy2byOMjG6C/+7813hWQMbZRU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/debtcollector/default.nix b/pkgs/development/python-modules/debtcollector/default.nix index 1915b64aca8..ced1929bcd7 100644 --- a/pkgs/development/python-modules/debtcollector/default.nix +++ b/pkgs/development/python-modules/debtcollector/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "debtcollector"; - version = "2.4.0"; + version = "2.5.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-G8A+LZAX3kgMQc8+Wg2MyV8bDI8TOSgbTsqKIqz3aiM="; + sha256 = "sha256-3J0a0/dFxD9LvtvKMPn/6JBajAKMmSbmEHeEfV6iV6s="; }; nativeBuildInputs = [ pbr ]; diff --git a/pkgs/development/python-modules/debugpy/default.nix b/pkgs/development/python-modules/debugpy/default.nix index 9f6026ce736..04b78d6c802 100644 --- a/pkgs/development/python-modules/debugpy/default.nix +++ b/pkgs/development/python-modules/debugpy/default.nix @@ -84,7 +84,6 @@ buildPythonPackage rec { # Override default arguments in pytest.ini pytestFlagsArray = [ "--timeout=0" - "-n=$NIX_BUILD_CORES" ]; disabledTests = lib.optionals (pythonAtLeast "3.10") [ diff --git a/pkgs/development/python-modules/dictpath/default.nix b/pkgs/development/python-modules/dictpath/default.nix index 2809d859589..5a648f7898f 100644 --- a/pkgs/development/python-modules/dictpath/default.nix +++ b/pkgs/development/python-modules/dictpath/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , pytestCheckHook +, six }: buildPythonPackage rec { @@ -21,6 +22,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook + six ]; pythonImportsCheck = [ "dictpath" ]; diff --git a/pkgs/development/python-modules/diskcache/default.nix b/pkgs/development/python-modules/diskcache/default.nix index 26cb0e438f0..cf3f7b514b1 100644 --- a/pkgs/development/python-modules/diskcache/default.nix +++ b/pkgs/development/python-modules/diskcache/default.nix @@ -45,10 +45,6 @@ buildPythonPackage rec { "test_get_many" ]; - pytestFlagsArray = [ - "-n $NIX_BUILD_CORES" - ]; - pythonImportsCheck = [ "diskcache" ]; diff --git a/pkgs/development/python-modules/django-allauth/default.nix b/pkgs/development/python-modules/django-allauth/default.nix index a68cfd6d9cd..591d41a960c 100644 --- a/pkgs/development/python-modules/django-allauth/default.nix +++ b/pkgs/development/python-modules/django-allauth/default.nix @@ -1,31 +1,45 @@ -{ lib, buildPythonPackage, fetchFromGitHub, requests, requests_oauthlib -, django, python3-openid, mock, coverage }: +{ lib +, buildPythonPackage +, django +, fetchFromGitHub +, python3-openid +, pythonOlder +, requests +, requests-oauthlib +}: buildPythonPackage rec { pname = "django-allauth"; version = "0.47.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; - # no tests on PyPI src = fetchFromGitHub { owner = "pennersr"; repo = pname; rev = version; - sha256 = "sha256-wKrsute6TCl331UrxNEBf/zTtGnyGHsOZQwdiicbg2o="; + hash = "sha256-wKrsute6TCl331UrxNEBf/zTtGnyGHsOZQwdiicbg2o="; }; - propagatedBuildInputs = [ requests requests_oauthlib django python3-openid ]; - - checkInputs = [ coverage mock ]; + propagatedBuildInputs = [ + requests + requests-oauthlib + django + python3-openid + ]; + # Tests requires a Django instance doCheck = false; - checkPhase = '' - cd $NIX_BUILD_TOP/$sourceRoot - coverage run manage.py test allauth - ''; + + pythonImportsCheck = [ + "allauth" + ]; meta = with lib; { description = "Integrated set of Django applications addressing authentication, registration, account management as well as 3rd party (social) account authentication"; homepage = "https://www.intenct.nl/projects/django-allauth"; license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/django/3.nix b/pkgs/development/python-modules/django/3.nix index 1538b8a82b4..f1cee8c5ffa 100644 --- a/pkgs/development/python-modules/django/3.nix +++ b/pkgs/development/python-modules/django/3.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "django"; - version = "3.2.12"; + version = "3.2.13"; disabled = pythonOlder "3.7"; src = fetchPypi { pname = "Django"; inherit version; - sha256 = "sha256-l3Lmk1cD5Z6ZOWCDLWamFM8CM6HFEjvGIk7MataeQeI="; + sha256 = "sha256-bZNJegqb9roOCxopzM3EDvv8dilyVbEwmzqISmiOxLY="; }; patches = lib.optional withGdal diff --git a/pkgs/development/python-modules/django/4.nix b/pkgs/development/python-modules/django/4.nix index 57c752725d5..db005067981 100644 --- a/pkgs/development/python-modules/django/4.nix +++ b/pkgs/development/python-modules/django/4.nix @@ -39,14 +39,14 @@ buildPythonPackage rec { pname = "Django"; - version = "4.0.3"; + version = "4.0.4"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - hash = "sha256-d/8ucFDjMkybZ+KbZwd1RWb1hRQRKprHMxD2DNUmGTA="; + hash = "sha256-ToF3hYUkQXVjzAQw8p6iSZRtgx6ssAaKFFVoZYffQLU="; }; patches = lib.optional withGdal diff --git a/pkgs/development/python-modules/django_modelcluster/default.nix b/pkgs/development/python-modules/django_modelcluster/default.nix index fc0d0e0921b..02995c1570b 100644 --- a/pkgs/development/python-modules/django_modelcluster/default.nix +++ b/pkgs/development/python-modules/django_modelcluster/default.nix @@ -1,25 +1,43 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub +, django +, django-taggit , pytz , pythonOlder -, six +, python }: buildPythonPackage rec { pname = "django-modelcluster"; - version = "5.2"; + version = "6.0"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "e541a46a0a899ef4778a4708be22e71cac3efacc09a6ff44bc065c5c9194c054"; + disabled = pythonOlder "3.5"; + + src = fetchFromGitHub { + owner = "wagtail"; + repo = pname; + rev = "v${version}"; + hash = "sha256-p6hvOkPWRVJYLHvwyn9nS05wblikRFmlSYZuLiCcuqc="; }; - disabled = pythonOlder "3.5"; + propagatedBuildInputs = [ + django + pytz + ]; + + passthru.extras-require.taggit = [ + django-taggit + ]; - doCheck = false; + checkInputs = passthru.extras-require.taggit; - propagatedBuildInputs = [ pytz six ]; + checkPhase = '' + runHook preCheck + ${python.interpreter} ./runtests.py --noinput + runHook postCheck + ''; meta = with lib; { description = "Django extension to allow working with 'clusters' of models as a single unit, independently of the database"; diff --git a/pkgs/development/python-modules/dm-haiku/default.nix b/pkgs/development/python-modules/dm-haiku/default.nix index 804233804a1..2c4c24b9367 100644 --- a/pkgs/development/python-modules/dm-haiku/default.nix +++ b/pkgs/development/python-modules/dm-haiku/default.nix @@ -39,7 +39,6 @@ buildPythonPackage rec { pytestCheckHook tensorflow ]; - pytestFlagsArray = [ "-n $NIX_BUILD_CORES" ]; pythonImportsCheck = [ "haiku" diff --git a/pkgs/development/python-modules/dnspython/default.nix b/pkgs/development/python-modules/dnspython/default.nix index 5676d270935..1dbbba48b10 100644 --- a/pkgs/development/python-modules/dnspython/default.nix +++ b/pkgs/development/python-modules/dnspython/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "dnspython"; - version = "2.2.0"; + version = "2.2.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; extension = "tar.gz"; - sha256 = "1mi6l2n766y1gic3x1swp2jk2nr7wbkb191qinwhddnh6bh534z7"; + sha256 = "0gk00m8zxjghxnzafhars51k5ahd6wfhf123nrc1j5gzlsj6jx8g"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/docutils/default.nix b/pkgs/development/python-modules/docutils/default.nix index 529a09d3f04..3cd680e062f 100644 --- a/pkgs/development/python-modules/docutils/default.nix +++ b/pkgs/development/python-modules/docutils/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "docutils"; - version = "0.17.1"; + version = "0.18.1"; src = fetchPypi { inherit pname version; - sha256 = "686577d2e4c32380bb50cbb22f575ed742d58168cee37e99117a854bcd88f125"; + sha256 = "sha256-Z5mHyvNhp1OdduWEy+3cMR467pN4d8hzRvMd68Y+nQY="; }; # Only Darwin needs LANG, but we could set it in general. diff --git a/pkgs/development/python-modules/dragonfly/default.nix b/pkgs/development/python-modules/dragonfly/default.nix index 82e1a645c85..74740aeffb7 100644 --- a/pkgs/development/python-modules/dragonfly/default.nix +++ b/pkgs/development/python-modules/dragonfly/default.nix @@ -24,13 +24,13 @@ buildPythonPackage rec { pname = "dragonfly"; - version = "0.32.0"; + version = "0.35.0"; src = fetchFromGitHub { owner = "dictation-toolbox"; repo = pname; rev = version; - sha256 = "BUbIhc8as/DVx8/4VeQS9emOLGcWFujNCxesSEEBqKQ="; + sha256 = "sha256-sqEEEr5/KG3cn4rmOGJt9zMNAjeLO6h3NJgg0EyewrM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/dugong/default.nix b/pkgs/development/python-modules/dugong/default.nix index 5130ea3b004..190411b5333 100644 --- a/pkgs/development/python-modules/dugong/default.nix +++ b/pkgs/development/python-modules/dugong/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, pythonAtLeast , pytestCheckHook }: @@ -21,6 +22,10 @@ buildPythonPackage rec { pytestCheckHook ]; + # Lots of tests hang during teardown with: + # ssl.SSLEOFError: EOF occurred in violation of protocol (_ssl.c:2396) + doCheck = pythonOlder "3.10"; + pythonImportsCheck = [ "dugong" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/enaml/default.nix b/pkgs/development/python-modules/enaml/default.nix index 9e6a910b2ba..ccd8bb497d1 100644 --- a/pkgs/development/python-modules/enaml/default.nix +++ b/pkgs/development/python-modules/enaml/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, setuptools-scm , atom , ply , kiwisolver @@ -12,13 +13,13 @@ buildPythonPackage rec { pname = "enaml"; - version = "0.14.1"; + version = "0.15.0"; src = fetchFromGitHub { owner = "nucleic"; repo = pname; - rev = version; - sha256 = "sha256-QfI7cwl2c5HOlFNNdG+oOv48X9jJZnZNU/kWgutWe6k="; + rev = "refs/tags/${version}"; + sha256 = "sha256-xSMgT8VooDS5kvf4BCcVbv/MNfRDTVnPKU3Ou+/Gq7I="; }; # qt bindings cannot be found during tests @@ -39,6 +40,7 @@ buildPythonPackage rec { "enaml.workbench" ]; + nativeBuildInputs = [ setuptools-scm ]; propagatedBuildInputs = [ atom ply @@ -48,6 +50,7 @@ buildPythonPackage rec { cppy bytecode ]; + SETUPTOOLS_SCM_PRETEND_VERSION = version; meta = with lib; { homepage = "https://github.com/nucleic/enaml"; diff --git a/pkgs/development/python-modules/entrypoint2/default.nix b/pkgs/development/python-modules/entrypoint2/default.nix index 73ede85fb88..4fd464d483f 100644 --- a/pkgs/development/python-modules/entrypoint2/default.nix +++ b/pkgs/development/python-modules/entrypoint2/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, EasyProcess, pathpy, pytestCheckHook }: +{ lib, buildPythonPackage, fetchPypi, EasyProcess, path, pytestCheckHook }: buildPythonPackage rec { pname = "entrypoint2"; @@ -11,7 +11,7 @@ buildPythonPackage rec { pythonImportsCheck = [ "entrypoint2" ]; - checkInputs = [ EasyProcess pathpy pytestCheckHook ]; + checkInputs = [ EasyProcess path pytestCheckHook ]; meta = with lib; { description = "Easy to use command-line interface for python modules"; diff --git a/pkgs/development/python-modules/ephemeral-port-reserve/default.nix b/pkgs/development/python-modules/ephemeral-port-reserve/default.nix new file mode 100644 index 00000000000..0af57945073 --- /dev/null +++ b/pkgs/development/python-modules/ephemeral-port-reserve/default.nix @@ -0,0 +1,42 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +}: + +let + pname = "ephemeral-port-reserve"; + version = "1.1.4"; +in +buildPythonPackage { + inherit pname version; + format = "setuptools"; + + src = fetchFromGitHub { + owner = "Yelp"; + repo = "ephemeral-port-reserve"; + rev = "v${version}"; + hash = "sha256-R6NRpfaT05PO/cTWgCakiGfCuCyucjVOXbAezn5x1cU="; + }; + + checkInputs = [ + pytestCheckHook + ]; + + disabledTests = lib.optionals stdenv.isDarwin [ + # can't find hostname in our darwin build environment + "test_fqdn" + ]; + + pythonImportsCheck = [ + "ephemeral_port_reserve" + ]; + + meta = with lib; { + description = "Find an unused port, reliably"; + homepage = "https://github.com/Yelp/ephemeral-port-reserve/"; + license = licenses.mit; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix index 3550f1e1736..2f3f5fe16ab 100644 --- a/pkgs/development/python-modules/exchangelib/default.nix +++ b/pkgs/development/python-modules/exchangelib/default.nix @@ -17,7 +17,7 @@ , pyyaml , requests , requests_ntlm -, requests_oauthlib +, requests-oauthlib , requests-kerberos , requests-mock , tzdata @@ -35,7 +35,7 @@ buildPythonPackage rec { owner = "ecederstrand"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fdYc+fJEePgCzAkUWz7pmL/CI/O9zm5G9xh1f4bhrH4="; + hash = "sha256-fdYc+fJEePgCzAkUWz7pmL/CI/O9zm5G9xh1f4bhrH4="; }; propagatedBuildInputs = [ @@ -48,7 +48,7 @@ buildPythonPackage rec { pygments requests requests_ntlm - requests_oauthlib + requests-oauthlib requests-kerberos tzdata tzlocal diff --git a/pkgs/development/python-modules/faker/default.nix b/pkgs/development/python-modules/faker/default.nix index 728339621f8..7ca49a48434 100644 --- a/pkgs/development/python-modules/faker/default.nix +++ b/pkgs/development/python-modules/faker/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "faker"; - version = "13.3.0"; + version = "13.3.4"; src = fetchPypi { pname = "Faker"; inherit version; - hash = "sha256-YYsUDHdHV4bb46VAmtU1Ict2dGq3pcd7mcZj8+8bG8I="; + hash = "sha256-GIlhBl+1x46mOfQhdvVRAPcskMOjF5rGyVXEvXErBRE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fakeredis/default.nix b/pkgs/development/python-modules/fakeredis/default.nix index 5860a959afc..5d45c4dc5ce 100644 --- a/pkgs/development/python-modules/fakeredis/default.nix +++ b/pkgs/development/python-modules/fakeredis/default.nix @@ -26,6 +26,11 @@ buildPythonPackage rec { hash = "sha256-fCxLobQuCnUzfFS3d78GcQVrRWllDj/5J+S5s4WvyOw="; }; + postPatch = '' + substituteInPlace setup.cfg \ + --replace "redis<4.2.0" "redis" + ''; + propagatedBuildInputs = [ aioredis lupa diff --git a/pkgs/development/python-modules/falcon/default.nix b/pkgs/development/python-modules/falcon/default.nix index 5dba22d8391..58bbae87283 100644 --- a/pkgs/development/python-modules/falcon/default.nix +++ b/pkgs/development/python-modules/falcon/default.nix @@ -1,22 +1,21 @@ { lib , buildPythonPackage , pythonOlder -, fetchPypi -, pytestCheckHook +, isPyPy +, fetchFromGitHub + +# build +, cython + +# tests , aiofiles , cbor2 -, ddt -, gunicorn , httpx -, hypercorn -, jsonschema , msgpack , mujson -, nose , orjson -, pecan , pytest-asyncio -, python-mimeparse +, pytestCheckHook , pyyaml , rapidjson , requests @@ -28,43 +27,57 @@ buildPythonPackage rec { pname = "falcon"; - version = "3.0.1"; + version = "3.1.0"; format = "pyproject"; disabled = pythonOlder "3.5"; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-xB2E2zJYgahw6LcSnV7P2XL6QyPPd7cRmh0qIZZu5oE="; + src = fetchFromGitHub { + owner = "falconry"; + repo = pname; + rev = version; + hash = "sha256-Y6bD0GCXhqpvMV+/i1v59p2qWZ91f2ey7sPQrVALY54="; }; + nativeBuildInputs = lib.optionals (!isPyPy) [ + cython + ]; + + preCheck = '' + export HOME=$TMPDIR + cp -R tests examples $TMPDIR + pushd $TMPDIR + ''; + + postCheck = '' + popd + ''; + checkInputs = [ - aiofiles - cbor2 - ddt - gunicorn - httpx - hypercorn - jsonschema - msgpack - mujson - nose - orjson - pecan - pytest-asyncio + # https://github.com/falconry/falcon/blob/master/requirements/tests pytestCheckHook - python-mimeparse pyyaml - rapidjson requests - testtools - ujson + rapidjson + orjson + + # ASGI specific + pytest-asyncio + aiofiles + httpx uvicorn websockets + + # handler specific + cbor2 + msgpack + mujson + ujson + ] ++ lib.optionals (pythonOlder "3.10") [ + testtools ]; - disabledTestPaths = [ - # missing optional nuts package - "falcon/bench/nuts/nuts/tests/test_functional.py" + pytestFlagsArray = [ + "tests" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/faraday-plugins/default.nix b/pkgs/development/python-modules/faraday-plugins/default.nix index e1c6fee726e..17f40b7a849 100644 --- a/pkgs/development/python-modules/faraday-plugins/default.nix +++ b/pkgs/development/python-modules/faraday-plugins/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "faraday-plugins"; - version = "1.6.2"; + version = "1.6.3"; format = "setuptools"; src = fetchFromGitHub { owner = "infobyte"; repo = "faraday_plugins"; - rev = "v${version}"; - sha256 = "sha256-1YROdQvwfV5Wp7vsNYCy2X6yR6mplunchD0U4xGUNBc="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-oynDX1miBvBmiN22ILQH1Q2y+PmWOfBunjZmVSnlvKk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fastapi/default.nix b/pkgs/development/python-modules/fastapi/default.nix index cf55a56bdd1..c3abc2163be 100644 --- a/pkgs/development/python-modules/fastapi/default.nix +++ b/pkgs/development/python-modules/fastapi/default.nix @@ -7,6 +7,7 @@ , pytest-asyncio , aiosqlite , databases +, fetchpatch , flask , httpx , passlib @@ -19,7 +20,7 @@ buildPythonPackage rec { pname = "fastapi"; - version = "0.75.1"; + version = "0.75.2"; format = "flit"; disabled = pythonOlder "3.6"; @@ -28,7 +29,7 @@ buildPythonPackage rec { owner = "tiangolo"; repo = pname; rev = version; - sha256 = "sha256-tSZ5isMzDhDsuVNQdoYXG0IYkgCvdVdARtFXELNjTtk="; + hash = "sha256-B4q3Q256Sj4jTQt1TDm3fiEaQKdVxddCF9+KsxkkTWo="; }; propagatedBuildInputs = [ @@ -50,6 +51,16 @@ buildPythonPackage rec { trio ]; + patches = [ + # Bump starlette, https://github.com/tiangolo/fastapi/pull/4483 + (fetchpatch { + name = "support-later-starlette.patch"; + # PR contains multiple commits + url = "https://patch-diff.githubusercontent.com/raw/tiangolo/fastapi/pull/4483.patch"; + sha256 = "sha256-ZWaqAd/QYEYRL1hSQdXdFPgWgdmOill2GtmEn33vz2U="; + }) + ]; + postPatch = '' substituteInPlace pyproject.toml \ --replace "starlette ==" "starlette >=" @@ -70,10 +81,13 @@ buildPythonPackage rec { disabledTests = [ "test_get_custom_response" - # Failed: DID NOT RAISE <class 'starlette.websockets.WebSocketDisconnect'> "test_websocket_invalid_data" "test_websocket_no_credentials" + # TypeError: __init__() missing 1...starlette-releated + "test_head" + "test_options" + "test_trace" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/fastcore/default.nix b/pkgs/development/python-modules/fastcore/default.nix index b7fc364958d..e86013605e7 100644 --- a/pkgs/development/python-modules/fastcore/default.nix +++ b/pkgs/development/python-modules/fastcore/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "fastcore"; - version = "1.4.1"; + version = "1.4.2"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -16,8 +16,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "fastai"; repo = pname; - rev = version; - sha256 = "sha256-qZsCsMwZxJsnznQ/C1SUPexkquv0tIyCkNYL5f2k0FU="; + rev = "refs/tags/${version}"; + sha256 = "sha256-0q+qFrfMsXkwgu08igt2kHZ9c3/aqz/inCpJXkPZsdg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fasteners/default.nix b/pkgs/development/python-modules/fasteners/default.nix index b1281c686d8..ef8a62bc8e8 100644 --- a/pkgs/development/python-modules/fasteners/default.nix +++ b/pkgs/development/python-modules/fasteners/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchFromGitHub , diskcache +, more-itertools , pytestCheckHook }: @@ -19,6 +20,7 @@ buildPythonPackage rec { checkInputs = [ diskcache + more-itertools pytestCheckHook ]; diff --git a/pkgs/development/python-modules/fastparquet/default.nix b/pkgs/development/python-modules/fastparquet/default.nix index 56fb6a53e14..30aa6a2ab76 100644 --- a/pkgs/development/python-modules/fastparquet/default.nix +++ b/pkgs/development/python-modules/fastparquet/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "fastparquet"; - version = "0.7.1"; + version = "0.8.1"; src = fetchFromGitHub { owner = "dask"; repo = pname; rev = version; - hash = "sha256-xV0AXNZSy4LSrHf11OP/+KDbeDQu8yF1ugX+W4mie1E="; + sha256 = "05qb4nz87p9vnrdsyl25hdp5sj35lki64gjza5dahc89fwfdnsmd"; }; postPatch = '' diff --git a/pkgs/development/python-modules/findpython/default.nix b/pkgs/development/python-modules/findpython/default.nix index ad35f379b90..6c4f5daf648 100644 --- a/pkgs/development/python-modules/findpython/default.nix +++ b/pkgs/development/python-modules/findpython/default.nix @@ -15,7 +15,7 @@ let pname = "findpython"; - version = "0.1.3"; + version = "0.1.6"; in buildPythonPackage { inherit pname version; @@ -25,7 +25,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - hash = "sha256-tVpBa5/PLShyG/vqHOsqbLZ6APmexLlKdtoix6IAKHA="; + hash = "sha256-n9YYXNy5a6pxCTCER++0k7LH8aj1aeEorxTXJrKmnhg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/fitbit/default.nix b/pkgs/development/python-modules/fitbit/default.nix index b41ac0a4983..3a1c7677677 100644 --- a/pkgs/development/python-modules/fitbit/default.nix +++ b/pkgs/development/python-modules/fitbit/default.nix @@ -1,41 +1,49 @@ { lib , buildPythonPackage , fetchFromGitHub -, coverage -, python-dateutil , freezegun , mock +, pytestCheckHook +, python-dateutil +, pythonOlder , requests-mock -, requests_oauthlib -, sphinx +, requests-oauthlib }: buildPythonPackage rec { pname = "fitbit"; version = "0.3.1"; + format = "setuptools"; - checkInputs = [ coverage freezegun mock requests-mock sphinx ]; - propagatedBuildInputs = [ python-dateutil requests_oauthlib ]; + disabled = pythonOlder "3.7"; - # The source package on PyPi is missing files required for unit testing. - # https://github.com/orcasgit/python-fitbit/issues/148 src = fetchFromGitHub { - rev = version; owner = "orcasgit"; repo = "python-fitbit"; - sha256 = "1w2lpgf6bs5nbnmslppaf4lbhr9cj6grg0a525xv41jip7iy3vfn"; + rev = version; + hash = "sha256-1u3h47lRBrJ7EUWBl5+RLGW4KHHqXqqrXbboZdy7VPA="; }; - postPatch = '' - substituteInPlace requirements/test.txt \ - --replace 'Sphinx>=1.2,<1.4' 'Sphinx' \ - --replace 'coverage>=3.7,<4.0' 'coverage' - ''; + propagatedBuildInputs = [ + python-dateutil + requests-oauthlib + ]; + + checkInputs = [ + freezegun + mock + pytestCheckHook + requests-mock + ]; + + pythonImportsCheck = [ + "fitbit" + ]; meta = with lib; { description = "Fitbit API Python Client Implementation"; - license = licenses.asl20; homepage = "https://github.com/orcasgit/python-fitbit"; + license = licenses.asl20; maintainers = with maintainers; [ delroth ]; }; } diff --git a/pkgs/development/python-modules/flake8-blind-except/default.nix b/pkgs/development/python-modules/flake8-blind-except/default.nix index ee3f46d078c..c25985e1681 100644 --- a/pkgs/development/python-modules/flake8-blind-except/default.nix +++ b/pkgs/development/python-modules/flake8-blind-except/default.nix @@ -1,6 +1,7 @@ { lib , fetchPypi , buildPythonPackage +, pycodestyle , pythonOlder }: @@ -16,6 +17,10 @@ buildPythonPackage rec { hash = "sha256-8lpXWp3LPus8dgv5wi22C4taIxICJO0fqppD913X3RY="; }; + propagatedBuildInputs = [ + pycodestyle + ]; + # Module has no tests doCheck = false; diff --git a/pkgs/development/python-modules/flake8/default.nix b/pkgs/development/python-modules/flake8/default.nix index c707cb3caaa..73dc7403b25 100644 --- a/pkgs/development/python-modules/flake8/default.nix +++ b/pkgs/development/python-modules/flake8/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.cfg \ - --replace "pyflakes >= 2.3.0, < 2.4.0" "pyflakes >= 2.3.0, < 2.5.0" + --replace "mccabe>=0.6.0,<0.7.0" "mccabe>=0.7.0,<0.8.0" ''; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flask-admin/default.nix b/pkgs/development/python-modules/flask-admin/default.nix index 7187e879052..6a1ea3991cf 100644 --- a/pkgs/development/python-modules/flask-admin/default.nix +++ b/pkgs/development/python-modules/flask-admin/default.nix @@ -62,6 +62,11 @@ buildPythonPackage rec { wtf-peewee ]; + disabledTests = [ + # Incompatible with werkzeug 2.1 + "test_mockview" + ]; + disabledTestPaths = [ # Tests have additional requirements "flask_admin/tests/geoa/test_basic.py" diff --git a/pkgs/development/python-modules/flask-bcrypt/default.nix b/pkgs/development/python-modules/flask-bcrypt/default.nix index fd0e63d26f3..1c09b6d809c 100644 --- a/pkgs/development/python-modules/flask-bcrypt/default.nix +++ b/pkgs/development/python-modules/flask-bcrypt/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "flask-bcrypt"; - version = "0.7.1"; + version = "1.0.1"; src = fetchFromGitHub { owner = "maxcountryman"; repo = pname; rev = version; - sha256 = "0036gag3nj7fzib23lbbpwhlrn1s0kkrfwk5pd90y4cjcfqh8z9x"; + sha256 = "sha256-WlIholi/nzq6Ikc0LS6FhG0Q5Kz0kvvAlA2YJ7EksZ4="; }; propagatedBuildInputs = [ @@ -23,9 +23,15 @@ buildPythonPackage rec { ]; checkPhase = '' - ${python.interpreter} test_bcrypt.py + runHook preCheck + ${python.interpreter} -m unittest discover + runHook postCheck ''; + pythonImportsCheck = [ + "flask_bcrypt" + ]; + meta = with lib; { description = "Brcrypt hashing for Flask"; homepage = "https://github.com/maxcountryman/flask-bcrypt"; diff --git a/pkgs/development/python-modules/flask-login/default.nix b/pkgs/development/python-modules/flask-login/default.nix index 3c7058c1212..62eb3287f8c 100644 --- a/pkgs/development/python-modules/flask-login/default.nix +++ b/pkgs/development/python-modules/flask-login/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "flask-login"; - version = "0.5.0"; + version = "0.6.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "Flask-Login"; inherit version; - sha256 = "6d33aef15b5bcead780acc339464aae8a6e28f13c90d8b1cf9de8b549d1c0b4b"; + sha256 = "sha256-qoT8+0w88JyljAjoFre85z8TSboc8T0A2N/8WHLV/PY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flask-paranoid/default.nix b/pkgs/development/python-modules/flask-paranoid/default.nix index 787b34a93b3..8de346593ef 100644 --- a/pkgs/development/python-modules/flask-paranoid/default.nix +++ b/pkgs/development/python-modules/flask-paranoid/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "flask-paranoid"; - version = "0.2"; + version = "0.3.0"; src = fetchFromGitHub { owner = "miguelgrinberg"; repo = pname; rev = "v${version}"; - sha256 = "0WWc/ktAOuTk4A75xI1jCj/aef2+1TjLKBA9+PRfJO0="; + sha256 = "sha256-tikD8efc3Q3xIQnaC3SSBaCRQxMI1HzXxeupvYeNnE4="; }; postPatch = '' diff --git a/pkgs/development/python-modules/flask-restful/default.nix b/pkgs/development/python-modules/flask-restful/default.nix index db7a63c5ed4..1af875d4bbc 100644 --- a/pkgs/development/python-modules/flask-restful/default.nix +++ b/pkgs/development/python-modules/flask-restful/default.nix @@ -20,6 +20,10 @@ buildPythonPackage rec { sha256 = "0gm5dz088v3d2k1dkcp9b3nnqpkk0fp2jly870hijj2xhc5nbv6c"; }; + patches = [ + ./werkzeug-2.1.0-compat.patch + ]; + propagatedBuildInputs = [ aniso8601 flask diff --git a/pkgs/development/python-modules/flask-restful/werkzeug-2.1.0-compat.patch b/pkgs/development/python-modules/flask-restful/werkzeug-2.1.0-compat.patch new file mode 100644 index 00000000000..c8707b23943 --- /dev/null +++ b/pkgs/development/python-modules/flask-restful/werkzeug-2.1.0-compat.patch @@ -0,0 +1,114 @@ +Fixes compatibility with Werkzeug 2.1.0 ported over from flask-restx#423. + +https://github.com/python-restx/flask-restx/pull/423 + +diff --git a/flask_restful/reqparse.py b/flask_restful/reqparse.py +index 9bb3099..5c59594 100644 +--- a/flask_restful/reqparse.py ++++ b/flask_restful/reqparse.py +@@ -114,7 +114,10 @@ class Argument(object): + :param request: The flask request object to parse arguments from + """ + if isinstance(self.location, six.string_types): +- value = getattr(request, self.location, MultiDict()) ++ if self.location in {"json", "get_json"}: ++ value = request.get_json(silent=True) ++ else: ++ value = getattr(request, self.location, MultiDict()) + if callable(value): + value = value() + if value is not None: +@@ -122,7 +125,10 @@ class Argument(object): + else: + values = MultiDict() + for l in self.location: +- value = getattr(request, l, None) ++ if l in {"json", "get_json"}: ++ value = request.get_json(silent=True) ++ else: ++ value = getattr(request, l, None) + if callable(value): + value = value() + if value is not None: +diff --git a/tests/test_api.py b/tests/test_api.py +index 15f12eb..9a9cceb 100644 +--- a/tests/test_api.py ++++ b/tests/test_api.py +@@ -936,7 +936,7 @@ class APITestCase(unittest.TestCase): + app = app.test_client() + resp = app.get('/api') + self.assertEqual(resp.status_code, 302) +- self.assertEqual(resp.headers['Location'], 'http://localhost/') ++ self.assertEqual(resp.headers['Location'], '/') + + def test_json_float_marshalled(self): + app = Flask(__name__) +diff --git a/tests/test_reqparse.py b/tests/test_reqparse.py +index 1d75e40..e5c586b 100644 +--- a/tests/test_reqparse.py ++++ b/tests/test_reqparse.py +@@ -23,8 +23,9 @@ class ReqParseTestCase(unittest.TestCase): + with app.app_context(): + parser = RequestParser() + parser.add_argument('foo', choices=('one', 'two'), help='Bad choice: {error_msg}') +- req = Mock(['values']) ++ req = Mock(["values", "get_json"]) + req.values = MultiDict([('foo', 'three')]) ++ req.get_json.return_value = None + parser.parse_args(req) + expected = {'foo': 'Bad choice: three is not a valid choice'} + abort.assert_called_with(400, message=expected) +@@ -35,8 +36,9 @@ class ReqParseTestCase(unittest.TestCase): + with app.app_context(): + parser = RequestParser() + parser.add_argument('foo', choices=('one', 'two'), help=u'Bad choice: {error_msg}') +- req = Mock(['values']) ++ req = Mock(["values", "get_json"]) + req.values = MultiDict([('foo', u'\xf0\x9f\x8d\x95')]) ++ req.get_json.return_value = None + parser.parse_args(req) + expected = {'foo': u'Bad choice: \xf0\x9f\x8d\x95 is not a valid choice'} + abort.assert_called_with(400, message=expected) +@@ -47,8 +49,9 @@ class ReqParseTestCase(unittest.TestCase): + with app.app_context(): + parser = RequestParser() + parser.add_argument('foo', choices=['one', 'two'], help='Please select a valid choice') +- req = Mock(['values']) ++ req = Mock(["values", "get_json"]) + req.values = MultiDict([('foo', 'three')]) ++ req.get_json.return_value = None + parser.parse_args(req) + expected = {'foo': 'Please select a valid choice'} + abort.assert_called_with(400, message=expected) +@@ -58,8 +61,9 @@ class ReqParseTestCase(unittest.TestCase): + def bad_choice(): + parser = RequestParser() + parser.add_argument('foo', choices=['one', 'two']) +- req = Mock(['values']) ++ req = Mock(["values", "get_json"]) + req.values = MultiDict([('foo', 'three')]) ++ req.get_json.return_value = None + parser.parse_args(req) + abort.assert_called_with(400, message='three is not a valid choice') + app = Flask(__name__) +@@ -190,7 +194,8 @@ class ReqParseTestCase(unittest.TestCase): + self.assertTrue(len(arg.source(req)) == 0) # yes, basically you don't find it + + def test_source_default_location(self): +- req = Mock(['values']) ++ req = Mock(['values', 'get_json']) ++ req.get_json.return_value = None + req._get_child_mock = lambda **kwargs: MultiDict() + arg = Argument('foo') + self.assertEqual(arg.source(req), req.values) +@@ -215,8 +220,9 @@ class ReqParseTestCase(unittest.TestCase): + args = parser.parse_args(req) + self.assertEqual(args['foo'], "bar") + +- req = Mock() ++ req = Mock(['get_json']) + req.values = () ++ req.get_json.return_value = None + req.json = None + req.view_args = {"foo": "bar"} + parser = RequestParser() diff --git a/pkgs/development/python-modules/flask-restx/default.nix b/pkgs/development/python-modules/flask-restx/default.nix index 42e3eabec74..4b88ab56450 100644 --- a/pkgs/development/python-modules/flask-restx/default.nix +++ b/pkgs/development/python-modules/flask-restx/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, fetchpatch , aniso8601 , jsonschema , flask @@ -28,6 +29,20 @@ buildPythonPackage rec { sha256 = "18vrmknyxw6adn62pz3kr9kvazfgjgl4pgimdf8527fyyiwcqy15"; }; + patches = [ + # Fixes werkzeug 2.1 compatibility + (fetchpatch { + # https://github.com/python-restx/flask-restx/pull/427 + url = "https://github.com/python-restx/flask-restx/commit/bb72a51860ea8a42c928f69bdd44ad20b1f9ee7e.patch"; + hash = "sha256-DRH3lI6TV1m0Dq1VyscL7GQS26OOra9g88dXZNrNpmQ="; + }) + (fetchpatch { + # https://github.com/python-restx/flask-restx/pull/427 + url = "https://github.com/python-restx/flask-restx/commit/bb3e9dd83b9d4c0d0fa0de7d7ff713fae71eccee.patch"; + hash = "sha256-HJpjG4aQWzEPCMfbXfkw4mz5TH9d89BCvGH2dE6Jfv0="; + }) + ]; + propagatedBuildInputs = [ aniso8601 flask diff --git a/pkgs/development/python-modules/flask-seasurf/default.nix b/pkgs/development/python-modules/flask-seasurf/default.nix index ff1f97c4218..6d09d7ec45c 100644 --- a/pkgs/development/python-modules/flask-seasurf/default.nix +++ b/pkgs/development/python-modules/flask-seasurf/default.nix @@ -1,19 +1,29 @@ -{ lib, fetchFromGitHub, buildPythonPackage, isPy3k, flask }: +{ lib, fetchFromGitHub, buildPythonPackage, isPy3k, flask, mock, python }: buildPythonPackage rec { pname = "Flask-SeaSurf"; - version = "0.3.0"; + version = "1.1.1"; disabled = !isPy3k; src = fetchFromGitHub { owner = "maxcountryman"; repo = "flask-seasurf"; rev = version; - sha256 = "02hsvppsz1d93v641f14fdnd22gbc12ilc9k9kn7wl119n5s3pd8"; + sha256 = "sha256-L/ZUEqqHmsyXG5eShcITII36ttwQlZN5GBngo+GcCdw="; }; propagatedBuildInputs = [ flask ]; + checkInputs = [ + mock + ]; + + checkPhase = '' + runHook preCheck + ${python.interpreter} -m unittest discover + runHook postCheck + ''; + pythonImportsCheck = [ "flask_seasurf" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/flask-security-too/default.nix b/pkgs/development/python-modules/flask-security-too/default.nix index e88556c07d0..8379ec7bcfe 100644 --- a/pkgs/development/python-modules/flask-security-too/default.nix +++ b/pkgs/development/python-modules/flask-security-too/default.nix @@ -1,69 +1,103 @@ { lib , buildPythonPackage , fetchPypi -, flask + +# extras: babel +, Babel +, flask-babel + +# extras: common +, bcrypt +, bleach +, flask_mail + +# extras: fsqla +, flask_sqlalchemy +, sqlalchemy +, sqlalchemy-utils + +# extras: mfa +, cryptography +, phonenumbers +, pyqrcode + +# propagates , blinker -, setuptools -, itsdangerous -, flask_principal -, passlib , email_validator -, flask_wtf +, flask , flask_login -, pytestCheckHook -, flask_mail -, sqlalchemy -, flask_sqlalchemy +, flask_principal +, flask_wtf +, itsdangerous +, passlib + +# tests , flask-mongoengine +, mongoengine +, mongomock , peewee , pony +, pytestCheckHook , zxcvbn -, mongoengine -, cryptography -, pyqrcode -, phonenumbers -, bleach -, mongomock }: buildPythonPackage rec { pname = "flask-security-too"; - version = "4.1.3"; + version = "4.1.4"; src = fetchPypi { pname = "Flask-Security-Too"; inherit version; - sha256 = "sha256-mW2NKGeJpyR4Ri7m+KE3ElSg3E+P7qbzNTTCo3cskc8="; + sha256 = "sha256-j6My1CD+GY2InHlN0IXPcNqfq+ytdoDD3y+5s2o3WRI="; }; propagatedBuildInputs = [ + blinker + email_validator flask flask_login flask_principal flask_wtf - email_validator itsdangerous passlib - blinker - setuptools ]; + passthru.extras-require = { + babel = [ + Babel + flask-babel + ]; + common = [ + bcrypt + bleach + flask_mail + ]; + fsqla = [ + flask_sqlalchemy + sqlalchemy + sqlalchemy-utils + ]; + mfa = [ + cryptography + phonenumbers + pyqrcode + ]; + }; + checkInputs = [ - pytestCheckHook - flask_mail - sqlalchemy - flask_sqlalchemy flask-mongoengine + mongoengine + mongomock peewee pony + pytestCheckHook zxcvbn - mongoengine - cryptography - pyqrcode - phonenumbers - bleach - mongomock - ]; + ] + ++ passthru.extras-require.babel + ++ passthru.extras-require.common + ++ passthru.extras-require.fsqla + ++ passthru.extras-require.mfa; + pythonImportsCheck = [ "flask_security" ]; diff --git a/pkgs/development/python-modules/flask-socketio/default.nix b/pkgs/development/python-modules/flask-socketio/default.nix index 496676600fc..a429e81ce0f 100644 --- a/pkgs/development/python-modules/flask-socketio/default.nix +++ b/pkgs/development/python-modules/flask-socketio/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "Flask-SocketIO"; - version = "5.0.1"; + version = "5.1.1"; src = fetchFromGitHub { owner = "miguelgrinberg"; repo = "Flask-SocketIO"; rev = "v${version}"; - sha256 = "01zf6cy95pgc4flgn0740z2my90l7rxwliahp6rb2xbp7rh32cng"; + sha256 = "sha256-PnNJEtcWaisOlt6OmYUl97TlZb9cK2ORvtEcmGPxSB0="; }; propagatedBuildInputs = [ @@ -28,6 +28,10 @@ buildPythonPackage rec { pytestCheckHook ]; + pytestFlagsArray = [ + "test_socketio.py" + ]; + pythonImportsCheck = [ "flask_socketio" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/flask-talisman/default.nix b/pkgs/development/python-modules/flask-talisman/default.nix index b57d5882470..82f3e09b479 100644 --- a/pkgs/development/python-modules/flask-talisman/default.nix +++ b/pkgs/development/python-modules/flask-talisman/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "flask-talisman"; - version = "0.8.1"; + version = "1.0.0"; src = fetchPypi { inherit pname version; - sha256 = "11gjgqkpj2yqydb0pfhjyx56iy4l9szgz33vg5d7bw8vqp02wl2x"; + sha256 = "sha256-IF0958Xs+tZnyEEj9fvlgLH2jNmhsFjXNTzANI4Vsb8="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/flask/default.nix b/pkgs/development/python-modules/flask/default.nix index 6b49d2d2a6e..997a28de1e9 100644 --- a/pkgs/development/python-modules/flask/default.nix +++ b/pkgs/development/python-modules/flask/default.nix @@ -3,21 +3,22 @@ , fetchPypi , asgiref , click +, importlib-metadata , itsdangerous , jinja2 , python-dotenv , werkzeug -, setuptools , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { - version = "2.0.3"; + version = "2.1.1"; pname = "Flask"; src = fetchPypi { inherit pname version; - sha256 = "sha256-4RIMIoyi9VO0cN9KX6knq2YlhGdSYGmYGz6wqRkCaH0="; + sha256 = "sha256-qMm9PlWOyZZG0Xepc5xB3x3tBilIC0yNKXVBLzyVGcg="; }; propagatedBuildInputs = [ @@ -27,11 +28,7 @@ buildPythonPackage rec { itsdangerous jinja2 werkzeug - - # required for CLI subcommand autodiscovery - # see: https://github.com/pallets/flask/blob/fdac8a5404e3e3a316568107a293f134707c75bb/src/flask/cli.py#L498 - setuptools - ]; + ] ++ lib.optional (pythonOlder "3.10") importlib-metadata; checkInputs = [ pytestCheckHook @@ -48,5 +45,6 @@ buildPythonPackage rec { Python web application frameworks. ''; license = licenses.bsd3; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/flax/default.nix b/pkgs/development/python-modules/flax/default.nix index 42d506cccde..97f2c3c3862 100644 --- a/pkgs/development/python-modules/flax/default.nix +++ b/pkgs/development/python-modules/flax/default.nix @@ -42,7 +42,10 @@ buildPythonPackage rec { pytestCheckHook tensorflow ]; - pytestFlagsArray = [ "-n $NIX_BUILD_CORES -W ignore::FutureWarning" ]; + + pytestFlagsArray = [ + "-W ignore::FutureWarning" + ]; disabledTestPaths = [ # Docs test, needs extra deps + we're not interested in it. diff --git a/pkgs/development/python-modules/flickrapi/default.nix b/pkgs/development/python-modules/flickrapi/default.nix index d7d20f19ea7..8ad1071cd24 100644 --- a/pkgs/development/python-modules/flickrapi/default.nix +++ b/pkgs/development/python-modules/flickrapi/default.nix @@ -1,35 +1,66 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , requests , requests-toolbelt -, requests_oauthlib -, pytest -, pytest-runner -, pytest-cov +, requests-oauthlib +, pytestCheckHook , responses +, pythonOlder }: buildPythonPackage rec { - pname = "flickrapi"; - version = "2.4.0"; + pname = "flickrapi"; + version = "2.4"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "03g2z21k6nhxgwysjrgnxj9m1yg25mnnkr10gpyfhfkd9w77pcpz"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "sybrenstuvel"; + repo = pname; + rev = "version-${version}"; + hash = "sha256-vRZrlXKI0UDdmDevh3XUngH4X8G3VlOCSP0z/rxhIgw="; }; - propagatedBuildInputs = [ requests requests-toolbelt requests_oauthlib ]; + propagatedBuildInputs = [ + requests + requests-toolbelt + requests-oauthlib + ]; + + checkInputs = [ + pytestCheckHook + responses + ]; + + preCheck = '' + export HOME=$(mktemp -d); + ''; + + disabledTests = [ + # Tests require network access + "test_default_format" + "test_etree_default_format" + "test_etree_format_error" + "test_etree_format_happy" + "test_explicit_format" + "test_json_callback_format" + "test_json_format" + "test_parsed_json_format" + "test_walk" + "test_xmlnode_format" + "test_xmlnode_format_error" + ]; - checkInputs = [ pytest pytest-runner pytest-cov responses ]; - doCheck = false; # Otherwise: - # ========================= no tests ran in 0.01 seconds ========================= - # builder for '/nix/store/c8a58v6aa18zci08q2l53s12ywn8jqhq-python3.6-flickrapi-2.4.0.drv' failed with exit code 5 + pythonImportsCheck = [ + "flickrapi" + ]; - meta = { + meta = with lib; { description = "A Python interface to the Flickr API"; - homepage = "https://stuvel.eu/flickrapi"; - license = lib.licenses.psfl; - maintainers = with lib.maintainers; [ obadz ]; + homepage = "https://stuvel.eu/flickrapi"; + license = licenses.psfl; + maintainers = with maintainers; [ obadz ]; }; } diff --git a/pkgs/development/python-modules/flit-core/default.nix b/pkgs/development/python-modules/flit-core/default.nix index 35bba06f1f3..d0b83d30ea2 100644 --- a/pkgs/development/python-modules/flit-core/default.nix +++ b/pkgs/development/python-modules/flit-core/default.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { pname = "flit-core"; - version = "3.6.0"; + inherit (flit) version; format = "pyproject"; outputs = [ @@ -35,7 +35,7 @@ buildPythonPackage rec { meta = with lib; { description = "Distribution-building parts of Flit. See flit package for more information"; - homepage = "https://github.com/takluyver/flit"; + homepage = "https://github.com/pypa/flit"; license = licenses.bsd3; maintainers = with maintainers; [ fridh SuperSandro2000 ]; }; diff --git a/pkgs/development/python-modules/flit/default.nix b/pkgs/development/python-modules/flit/default.nix index 830ed2702b8..598905d97ff 100644 --- a/pkgs/development/python-modules/flit/default.nix +++ b/pkgs/development/python-modules/flit/default.nix @@ -3,7 +3,7 @@ , fetchFromGitHub , docutils , requests -, pytest +, pytestCheckHook , testpath , responses , flit-core @@ -18,14 +18,14 @@ buildPythonPackage rec { pname = "flit"; - version = "3.6.0"; + version = "3.7.1"; format = "pyproject"; src = fetchFromGitHub { owner = "takluyver"; repo = "flit"; rev = version; - sha256 = "sha256-D3q/1g6njrrmizooGmzNd9g2nKs00dMGj9jrrv3Y6HQ="; + sha256 = "sha256-zKgaeK3fskz2TuHvIWlxBrdZIWfIJHhaqopZ3+V36wY="; }; nativeBuildInputs = [ @@ -40,18 +40,17 @@ buildPythonPackage rec { tomli-w ]; - checkInputs = [ pytest testpath responses ]; + checkInputs = [ pytestCheckHook testpath responses ]; - # Disable test that needs some ini file. - # Disable test that wants hg - checkPhase = '' - HOME=$(mktemp -d) pytest -k "not test_invalid_classifier and not test_build_sdist" - ''; + disabledTests = [ + # needs some ini file. + "test_invalid_classifier" + ]; meta = with lib; { description = "A simple packaging tool for simple packages"; - homepage = "https://github.com/takluyver/flit"; + homepage = "https://github.com/pypa/flit"; license = licenses.bsd3; - maintainers = [ maintainers.fridh ]; + maintainers = with maintainers; [ fridh SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/fn/default.nix b/pkgs/development/python-modules/fn/default.nix index f64d1a3d122..0acdf24d954 100644 --- a/pkgs/development/python-modules/fn/default.nix +++ b/pkgs/development/python-modules/fn/default.nix @@ -1,20 +1,34 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib +, buildPythonPackage +, fetchpatch +, fetchPypi +}: buildPythonPackage rec { pname = "fn"; version = "0.4.3"; - meta = { + src = fetchPypi { + inherit pname version; + sha256 = "1nmsjmn8jb4gp22ksx0j0hhdf4y0zm8rjykyy2i6flzimg6q1kgq"; + }; + + patches = [ + (fetchpatch { + url = "https://github.com/kachayev/fn.py/commit/a54fc0bd8aeae277de2db726131d249ce607c0c2.patch"; + hash = "sha256-I0ZISOgVibsc1k7gwSfeW6qV9PspQqdaHlRLr/IusQ8="; + excludes = [ + "fn/monad.py" + ]; + }) + ]; + + meta = with lib; { description = '' Functional programming in Python: implementation of missing features to enjoy FP ''; homepage = "https://github.com/kachayev/fn.py"; - license = lib.licenses.asl20; - }; - - src = fetchPypi { - inherit pname version; - sha256 = "1nmsjmn8jb4gp22ksx0j0hhdf4y0zm8rjykyy2i6flzimg6q1kgq"; + license = licenses.asl20; }; } diff --git a/pkgs/development/python-modules/fontparts/default.nix b/pkgs/development/python-modules/fontparts/default.nix index 7830cb11712..16d594eab04 100644 --- a/pkgs/development/python-modules/fontparts/default.nix +++ b/pkgs/development/python-modules/fontparts/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, python +{ lib, buildPythonPackage, fetchPypi, python, pythonOlder , fonttools, lxml, fs, unicodedata2 , defcon, fontpens, fontmath, booleanoperations , pytest, setuptools-scm @@ -6,11 +6,13 @@ buildPythonPackage rec { pname = "fontParts"; - version = "0.10.3"; + version = "0.10.4"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-aHtjLHdc2/s3ppF8fz8qFAqxwEKMZJJAFNlBaZ7FAb4="; + sha256 = "1ic453q86s5hsw8mxnclk1vr4qp69fd67gywhv23zqwz9a7kb7lh"; extension = "zip"; }; diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix index 84f2edb7210..a70dfef0054 100644 --- a/pkgs/development/python-modules/fonttools/default.nix +++ b/pkgs/development/python-modules/fonttools/default.nix @@ -17,16 +17,15 @@ buildPythonPackage rec { pname = "fonttools"; - version = "4.29.1"; + version = "4.30.0"; - # Bump to 3.7 when https://github.com/fonttools/fonttools/pull/2417 is merged - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-xviNGFcb1wj5WuA6UxHpw3BkpdjSJL3fbsBytJacp8w="; + sha256 = "1y9f071bdl66rsx42j16j5v53h85xra5qlg860rz3m054s2rmin9"; }; # all dependencies are optional, but diff --git a/pkgs/development/python-modules/freezegun/default.nix b/pkgs/development/python-modules/freezegun/default.nix index 2ffefa1a4e0..171d2b0556a 100644 --- a/pkgs/development/python-modules/freezegun/default.nix +++ b/pkgs/development/python-modules/freezegun/default.nix @@ -1,21 +1,23 @@ { lib , buildPythonPackage -, pythonOlder -, pythonAtLeast , fetchpatch , fetchPypi -, python-dateutil , pytestCheckHook +, python-dateutil +, pythonAtLeast +, pythonOlder }: buildPythonPackage rec { pname = "freezegun"; - version = "1.1.0"; - disabled = pythonOlder "3.5"; + version = "1.2.1"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "177f9dd59861d871e27a484c3332f35a6e3f5d14626f2bf91be37891f18927f3"; + hash = "sha256-tMZO+ydea8aNxudxsX/+D/D5C4GipRiQQ1ULZRmSa6Q="; }; patches = lib.optionals (pythonAtLeast "3.10") [ @@ -26,13 +28,22 @@ buildPythonPackage rec { }) ]; - propagatedBuildInputs = [ python-dateutil ]; - checkInputs = [ pytestCheckHook ]; + propagatedBuildInputs = [ + python-dateutil + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "freezegun" + ]; meta = with lib; { - description = "FreezeGun: Let your Python tests travel through time"; + description = "Library that allows your Python tests to travel through time"; homepage = "https://github.com/spulec/freezegun"; license = licenses.asl20; + maintainers = with maintainers; [ fab ]; }; - } diff --git a/pkgs/development/python-modules/funcparserlib/default.nix b/pkgs/development/python-modules/funcparserlib/default.nix index 3ace04b108d..ba535146cf2 100644 --- a/pkgs/development/python-modules/funcparserlib/default.nix +++ b/pkgs/development/python-modules/funcparserlib/default.nix @@ -6,6 +6,7 @@ , python , pytestCheckHook , pythonOlder +, six }: buildPythonPackage rec { @@ -28,6 +29,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook + six ]; patches = [ diff --git a/pkgs/development/python-modules/geoalchemy2/default.nix b/pkgs/development/python-modules/geoalchemy2/default.nix index 15ba87400e3..9260bb6e3c3 100644 --- a/pkgs/development/python-modules/geoalchemy2/default.nix +++ b/pkgs/development/python-modules/geoalchemy2/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "GeoAlchemy2"; - version = "0.10.2"; + version = "0.11.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "3db833746e11bc802b754751ec94eaab81009a9ad8fe647d461fe76d1a47a3fd"; + sha256 = "sha256-+SoPrdtbdDhNu/PHAAQzNYzo4HoYD+HWwoQ+qgQ3/wg="; }; nativeBuildInputs = [ @@ -34,6 +34,12 @@ buildPythonPackage rec { pytestCheckHook ]; + pytestFlagsArray = [ + # tests require live postgis database + "--deselect=tests/test_pickle.py::TestPickle::test_pickle_unpickle" + "--deselect=tests/gallery/test_specific_compilation.py::test_specific_compilation" + ]; + disabledTestPaths = [ # tests require live postgis database "tests/gallery/test_decipher_raster.py" @@ -41,6 +47,11 @@ buildPythonPackage rec { "tests/gallery/test_summarystatsagg.py" "tests/gallery/test_type_decorator.py" "tests/test_functional.py" + "tests/test_functional_postgresql.py" + ]; + + pythonImportsCheck = [ + "geoalchemy2" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/gipc/default.nix b/pkgs/development/python-modules/gipc/default.nix index 2bab62fbcb1..85d17ee3ab8 100644 --- a/pkgs/development/python-modules/gipc/default.nix +++ b/pkgs/development/python-modules/gipc/default.nix @@ -27,8 +27,6 @@ buildPythonPackage rec { ''; homepage = "http://gehrcke.de/gipc"; license = licenses.mit; - # gipc only has support for older versions of gevent - broken = versionOlder "1.6" gevent.version; }; } diff --git a/pkgs/development/python-modules/glean-parser/default.nix b/pkgs/development/python-modules/glean-parser/default.nix index 704c556c003..3cb8d83b7c8 100644 --- a/pkgs/development/python-modules/glean-parser/default.nix +++ b/pkgs/development/python-modules/glean-parser/default.nix @@ -26,6 +26,12 @@ buildPythonPackage rec { hash = "sha256-PjOMNUnrz0kDfYEXv5Ni/9RIHn4Yylle6NJOK1Rb3SY="; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "pytest-runner" "" \ + --replace "MarkupSafe==2.0.1" "MarkupSafe" + ''; + nativeBuildInputs = [ setuptools-scm ]; @@ -44,11 +50,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "pytest-runner" "" - ''; - disabledTests = [ # https://bugzilla.mozilla.org/show_bug.cgi?id=1741668 "test_validate_ping" diff --git a/pkgs/development/python-modules/glfw/default.nix b/pkgs/development/python-modules/glfw/default.nix index e9587d0b765..accd8fcf5b9 100644 --- a/pkgs/development/python-modules/glfw/default.nix +++ b/pkgs/development/python-modules/glfw/default.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "glfw"; - version = "2.5.1"; + version = "2.5.3"; src = fetchFromGitHub { owner = "FlorianRhiem"; repo = "pyGLFW"; - rev = "v${version}"; - sha256 = "sha256-XR6TqIrbCR93Qe9cRMgJ0aT/6ZZFj+6Mz+9GhiMD8lM="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-LaK/lYCUN7PDy8QsaGCnQPM1nvQNeBRTdEEkKtaMUHA="; }; # Patch path to GLFW shared object diff --git a/pkgs/development/python-modules/google-api-core/default.nix b/pkgs/development/python-modules/google-api-core/default.nix index 468b2476de9..b5a9bfea212 100644 --- a/pkgs/development/python-modules/google-api-core/default.nix +++ b/pkgs/development/python-modules/google-api-core/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "google-api-core"; - version = "2.5.0"; + version = "2.7.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-8zhjpnCWUXA7ixi2cJNRSDjHnysE0CqlASAwefJLgBg="; + sha256 = "sha256-sPpXflEvDI4GM4a5dHGLhhRYanmMWJTtNL7fJW2driQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-api-python-client/default.nix b/pkgs/development/python-modules/google-api-python-client/default.nix index 493bda2f9d5..bce1897eac5 100644 --- a/pkgs/development/python-modules/google-api-python-client/default.nix +++ b/pkgs/development/python-modules/google-api-python-client/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-api-python-client"; - version = "2.39.0"; + version = "2.42.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-QBFpIV7K+1r7aD0/4OQ8BZ62Jccf6hkp8WQD3acqLcE="; + sha256 = "sha256-e/WLZltjXQattHeXqaT3NILnOeAu0DbNlg3HwYM2H2c="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-auth-oauthlib/default.nix b/pkgs/development/python-modules/google-auth-oauthlib/default.nix index 6ee0cb06540..449a07ea40c 100644 --- a/pkgs/development/python-modules/google-auth-oauthlib/default.nix +++ b/pkgs/development/python-modules/google-auth-oauthlib/default.nix @@ -6,12 +6,16 @@ , mock , pytestCheckHook , google-auth -, requests_oauthlib +, requests-oauthlib +, pythonOlder }: buildPythonPackage rec { pname = "google-auth-oauthlib"; version = "0.5.1"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; @@ -20,7 +24,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ google-auth - requests_oauthlib + requests-oauthlib ]; checkInputs = [ @@ -29,7 +33,13 @@ buildPythonPackage rec { pytestCheckHook ]; - disabledTests = lib.optionals stdenv.isDarwin [ "test_run_local_server" ]; + disabledTests = lib.optionals stdenv.isDarwin [ + "test_run_local_server" + ]; + + pythonImportsCheck = [ + "google_auth_oauthlib" + ]; meta = with lib; { description = "Google Authentication Library: oauthlib integration"; diff --git a/pkgs/development/python-modules/google-cloud-bigquery/default.nix b/pkgs/development/python-modules/google-cloud-bigquery/default.nix index 86ac3048e0a..e6b2ba11f67 100644 --- a/pkgs/development/python-modules/google-cloud-bigquery/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigquery/default.nix @@ -18,12 +18,12 @@ buildPythonPackage rec { pname = "google-cloud-bigquery"; - version = "2.34.2"; + version = "3.0.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-DriC3zCgD1oe89M5ojpnAjCACyqySUWVkafmharWcU8="; + sha256 = "sha256-UmW6BEV44Ucdg/hUGSQk/kyDnB+Hsyx4q3AXTQe89hI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-bigtable/default.nix b/pkgs/development/python-modules/google-cloud-bigtable/default.nix index d6cc1f35e61..1fbe806db3c 100644 --- a/pkgs/development/python-modules/google-cloud-bigtable/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigtable/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-bigtable"; - version = "2.8.0"; + version = "2.8.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-FLnEEsbTie1Z/9Y8nLzvLFbxiexUL4GFa8jCcEAYK1s="; + hash = "sha256-Gy/CS06uGQyQoPLjm8ChR6MkO6CYkpC/n5wM/VncDDs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-testutils/default.nix b/pkgs/development/python-modules/google-cloud-testutils/default.nix index d4551b4954a..c5d02926f50 100644 --- a/pkgs/development/python-modules/google-cloud-testutils/default.nix +++ b/pkgs/development/python-modules/google-cloud-testutils/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, click, google-auth, six }: +{ lib, buildPythonPackage, fetchPypi, click, google-auth, packaging, six }: buildPythonPackage rec { pname = "google-cloud-testutils"; @@ -9,7 +9,7 @@ buildPythonPackage rec { sha256 = "sha256-X85NRgGZt7+OpL4poOyS+UWec4fuABiTxEYyFpkUpqs="; }; - propagatedBuildInputs = [ click google-auth six ]; + propagatedBuildInputs = [ click google-auth packaging six ]; # does not contain tests doCheck = false; diff --git a/pkgs/development/python-modules/google-nest-sdm/default.nix b/pkgs/development/python-modules/google-nest-sdm/default.nix index b190d7e854e..c14598a8eba 100644 --- a/pkgs/development/python-modules/google-nest-sdm/default.nix +++ b/pkgs/development/python-modules/google-nest-sdm/default.nix @@ -11,7 +11,7 @@ , pytest-asyncio , pytestCheckHook , pythonOlder -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { @@ -33,7 +33,7 @@ buildPythonPackage rec { google-auth google-auth-oauthlib google-cloud-pubsub - requests_oauthlib + requests-oauthlib ]; checkInputs = [ diff --git a/pkgs/development/python-modules/graphene-django/default.nix b/pkgs/development/python-modules/graphene-django/default.nix index f736fbe39d8..404a6779505 100644 --- a/pkgs/development/python-modules/graphene-django/default.nix +++ b/pkgs/development/python-modules/graphene-django/default.nix @@ -19,17 +19,21 @@ buildPythonPackage rec { pname = "graphene-django"; - version = "unstable-2021-06-11"; + version = "unstable-2022-03-03"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "graphql-python"; repo = pname; - rev = "e7f7d8da07ba1020f9916153f17e97b0ec037712"; - sha256 = "0b33q1im90ahp3gzy9wx5amfzy6q57ydjpy5rn988gh81hbyqaxv"; + rev = "f6ec0689c18929344c79ae363d2e3d5628fa4a2d"; + hash = "sha256-KTZ5jcoeHYXnlaF47t8jIi6+7NyMyA4hDPv+il3bt+U="; }; + patches = [ + ./graphene-3_2_0.patch + ]; + postPatch = '' substituteInPlace setup.py \ --replace '"pytest-runner"' "" diff --git a/pkgs/development/python-modules/graphene-django/graphene-3_2_0.patch b/pkgs/development/python-modules/graphene-django/graphene-3_2_0.patch new file mode 100644 index 00000000000..0e8fa63464a --- /dev/null +++ b/pkgs/development/python-modules/graphene-django/graphene-3_2_0.patch @@ -0,0 +1,150 @@ +diff --git a/graphene_django/filter/tests/test_fields.py b/graphene_django/filter/tests/test_fields.py +index 7d440f4..0aec6e4 100644 +--- a/graphene_django/filter/tests/test_fields.py ++++ b/graphene_django/filter/tests/test_fields.py +@@ -1005,7 +1005,7 @@ def test_integer_field_filter_type(): + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pets(offset: Int = null, before: String = null, after: String = null, first: Int = null, last: Int = null, age: Int = null): PetTypeConnection +@@ -1074,7 +1074,7 @@ def test_other_filter_types(): + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pets(offset: Int = null, before: String = null, after: String = null, first: Int = null, last: Int = null, age: Int = null, age_Isnull: Boolean = null, age_Lt: Int = null): PetTypeConnection +diff --git a/graphene_django/tests/test_command.py b/graphene_django/tests/test_command.py +index 70116b8..a4ab4db 100644 +--- a/graphene_django/tests/test_command.py ++++ b/graphene_django/tests/test_command.py +@@ -49,7 +49,7 @@ def test_generate_graphql_file_on_call_graphql_schema(): + assert handle.write.called_once() + + schema_output = handle.write.call_args[0][0] +- assert schema_output == dedent( ++ assert schema_output.rstrip() + "\n" == dedent( + """\ + type Query { + hi: String +diff --git a/graphene_django/tests/test_types.py b/graphene_django/tests/test_types.py +index bde72c7..0b64440 100644 +--- a/graphene_django/tests/test_types.py ++++ b/graphene_django/tests/test_types.py +@@ -247,7 +247,7 @@ def test_schema_representation(): + } + """ + ) +- assert str(schema) == expected ++ assert str(schema).rstrip() + "\n" == expected + + + def with_local_registry(func): +@@ -515,7 +515,7 @@ class TestDjangoObjectType: + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pet: Pet +@@ -541,7 +541,7 @@ class TestDjangoObjectType: + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pet: Pet +@@ -576,7 +576,7 @@ class TestDjangoObjectType: + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pet: Pet +@@ -603,7 +603,7 @@ class TestDjangoObjectType: + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pet: PetModelKind +@@ -642,7 +642,7 @@ class TestDjangoObjectType: + + schema = Schema(query=Query) + +- assert str(schema) == dedent( ++ assert str(schema).rstrip() + "\n" == dedent( + """\ + type Query { + pet: PetModelKind +diff --git a/graphene_django/tests/test_views.py b/graphene_django/tests/test_views.py +index 945fa87..e2e8b46 100644 +--- a/graphene_django/tests/test_views.py ++++ b/graphene_django/tests/test_views.py +@@ -109,12 +109,10 @@ def test_reports_validation_errors(client): + { + "message": "Cannot query field 'unknownOne' on type 'QueryRoot'.", + "locations": [{"line": 1, "column": 9}], +- "path": None, + }, + { + "message": "Cannot query field 'unknownTwo' on type 'QueryRoot'.", + "locations": [{"line": 1, "column": 21}], +- "path": None, + }, + ] + } +@@ -135,8 +133,6 @@ def test_errors_when_missing_operation_name(client): + "errors": [ + { + "message": "Must provide operation name if query contains multiple operations.", +- "locations": None, +- "path": None, + } + ] + } +@@ -476,8 +472,7 @@ def test_handles_syntax_errors_caught_by_graphql(client): + "errors": [ + { + "locations": [{"column": 1, "line": 1}], +- "message": "Syntax Error: Unexpected Name 'syntaxerror'.", +- "path": None, ++ "message": "Syntax Error: Unexpected Name 'syntaxerror'." + } + ] + } +diff --git a/graphene_django/views.py b/graphene_django/views.py +index c23b020..f533f70 100644 +--- a/graphene_django/views.py ++++ b/graphene_django/views.py +@@ -11,7 +11,6 @@ from django.views.decorators.csrf import ensure_csrf_cookie + from django.views.generic import View + from graphql import OperationType, get_operation_ast, parse, validate + from graphql.error import GraphQLError +-from graphql.error import format_error as format_graphql_error + from graphql.execution import ExecutionResult + + from graphene import Schema +@@ -387,7 +386,7 @@ class GraphQLView(View): + @staticmethod + def format_error(error): + if isinstance(error, GraphQLError): +- return format_graphql_error(error) ++ return error.formatted + + return {"message": str(error)} + diff --git a/pkgs/development/python-modules/graphene/default.nix b/pkgs/development/python-modules/graphene/default.nix index e975bff8fee..7d44f4c6a24 100644 --- a/pkgs/development/python-modules/graphene/default.nix +++ b/pkgs/development/python-modules/graphene/default.nix @@ -1,6 +1,7 @@ { lib , aniso8601 , buildPythonPackage +, fetchpatch , fetchFromGitHub , graphql-core , graphql-relay @@ -29,6 +30,20 @@ buildPythonPackage rec { sha256 = "0qgp3nl6afyz6y27bw175hyqppx75pp1vqwl7nvlpwvgwyyc2mnl"; }; + patches = [ + # Fix graphql-core 3.2.0 support + (fetchpatch { + # https://github.com/graphql-python/graphene/pull/1378 + url = "https://github.com/graphql-python/graphene/commit/989970f89341ebb949962d13dcabca8a6ccddad4.patch"; + hash = "sha256-qRxWTqv5XQN7uFjL2uv9NjTvSLi76/MyFSa4jpkb8to="; + }) + (fetchpatch { + # https://github.com/graphql-python/graphene/pull/1417 + url = "https://github.com/graphql-python/graphene/commit/4e0e18d1682b7759bdf16499c573f675c7fb51cb.patch"; + hash = "sha256-icdTGDabJouQ3hVpcMkkeabNwdoDxdVVAboTOWFbO94="; + }) + ]; + propagatedBuildInputs = [ aniso8601 graphql-core @@ -53,6 +68,8 @@ buildPythonPackage rec { # Expects different Exeception classes, but receives none of them # https://github.com/graphql-python/graphene/issues/1346 "test_unexpected_error" + # https://github.com/graphql-python/graphene/pull/1417#issuecomment-1102492138 + "test_example_end_to_end" ] ++ lib.optionals (pythonAtLeast "3.10") [ "test_objecttype_as_container_extra_args" "test_objecttype_as_container_invalid_kwargs" diff --git a/pkgs/development/python-modules/graphql-relay/default.nix b/pkgs/development/python-modules/graphql-relay/default.nix index d5460461925..435f1f5d8d0 100644 --- a/pkgs/development/python-modules/graphql-relay/default.nix +++ b/pkgs/development/python-modules/graphql-relay/default.nix @@ -1,22 +1,36 @@ { lib , buildPythonPackage , fetchPypi + +, pythonOlder + +# build +, poetry-core + +# runtime , graphql-core +, typing-extensions + +# tests , pytest-asyncio +, pytest-describe , pytestCheckHook -, pythonOlder -, typing-extensions }: buildPythonPackage rec { pname = "graphql-relay"; - version = "3.1.5"; + version = "3.2.0"; + format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-En9AkT8Ry4R0Uu95STEmGq47Ii6q+Xb3yEMCmFNOVNM="; + hash = "sha256-H/HFEpg1bkgaC+AJzN/ySYMs5T8wVZwTOPIqDg0XJQw="; }; + nativeBuildInputs = [ + poetry-core + ]; + propagatedBuildInputs = [ graphql-core ] ++ lib.optionals (pythonOlder "3.8") [ @@ -25,6 +39,7 @@ buildPythonPackage rec { checkInputs = [ pytest-asyncio + pytest-describe pytestCheckHook ]; diff --git a/pkgs/development/python-modules/grip/default.nix b/pkgs/development/python-modules/grip/default.nix index dafa692493e..eab4b45547c 100644 --- a/pkgs/development/python-modules/grip/default.nix +++ b/pkgs/development/python-modules/grip/default.nix @@ -1,6 +1,5 @@ { lib , fetchFromGitHub -, fetchpatch # Python bits: , buildPythonPackage , pytest @@ -16,23 +15,15 @@ buildPythonPackage rec { pname = "grip"; - version = "4.5.2"; + version = "4.6.1"; src = fetchFromGitHub { owner = "joeyespo"; repo = "grip"; rev = "v${version}"; - sha256 = "0hphplnyi903jx7ghfxplg1qlj2kpcav1frr2js7p45pbh5ib9rm"; + sha256 = "sha256-CHL2dy0H/i0pLo653F7aUHFvZHTeZA6jC/rwn1KrEW4="; }; - patches = [ - # Render "front matter", used in our RFC template and elsewhere - (fetchpatch { - url = "https://github.com/joeyespo/grip/pull/249.patch"; - sha256 = "07za5iymfv647dfrvi6hhj54a96hgjyarys51zbi08c51shqyzpg"; - }) - ]; - checkInputs = [ pytest responses ]; propagatedBuildInputs = [ docopt flask markdown path-and-address pygments requests tabulate ]; diff --git a/pkgs/development/python-modules/grpcio-status/default.nix b/pkgs/development/python-modules/grpcio-status/default.nix index fc069dccbaf..173353fc9f2 100644 --- a/pkgs/development/python-modules/grpcio-status/default.nix +++ b/pkgs/development/python-modules/grpcio-status/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "grpcio-status"; - version = "1.44.0"; + version = "1.45.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-rGE6t6RTgMv6PlKQItCzcxfYWPFyum5lwYiqc1VTk5g="; + sha256 = "sha256-S6rY6Ow8RHiOA4wk49fccCWeBroJ9ApbgXhThWO6Plo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-tools/default.nix b/pkgs/development/python-modules/grpcio-tools/default.nix index c428be64307..b3794e8b9d4 100644 --- a/pkgs/development/python-modules/grpcio-tools/default.nix +++ b/pkgs/development/python-modules/grpcio-tools/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "grpcio-tools"; - version = "1.44.0"; + version = "1.45.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-vjf0WOpRDJqPHKq7wrJY0S5V0YmlZ/Xtys6Q8n3A778="; + sha256 = "sha256-oBbPwh4NkbOwNtPU+WjR/eqGXfoDUkyx++yoRxn9RaI="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/python-modules/gym/default.nix b/pkgs/development/python-modules/gym/default.nix index aff7d1a2978..1616343f8b4 100644 --- a/pkgs/development/python-modules/gym/default.nix +++ b/pkgs/development/python-modules/gym/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "gym"; - version = "0.22.0"; + version = "0.21.0"; src = fetchFromGitHub { owner = "openai"; repo = pname; - rev = version; - sha256 = "sha256-JbPWLuQGo+fErUlCKKpMwWdu0KvXBDuH2MeAHdJCTgM="; + rev = "v${version}"; + sha256 = "12b545xz0r2g4z5r7f8amxl7nm0lqymkzwcwhg1bni9h0sxwpv6c"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/h11/default.nix b/pkgs/development/python-modules/h11/default.nix index be4802566f7..98dd8eef6cb 100644 --- a/pkgs/development/python-modules/h11/default.nix +++ b/pkgs/development/python-modules/h11/default.nix @@ -2,11 +2,13 @@ , buildPythonPackage , fetchPypi , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "h11"; version = "0.13.0"; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; @@ -22,5 +24,6 @@ buildPythonPackage rec { description = "Pure-Python, bring-your-own-I/O implementation of HTTP/1.1"; homepage = "https://github.com/python-hyper/h11"; license = licenses.mit; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/hidapi/default.nix b/pkgs/development/python-modules/hidapi/default.nix index cf54198b18b..b77dcaaa9d3 100644 --- a/pkgs/development/python-modules/hidapi/default.nix +++ b/pkgs/development/python-modules/hidapi/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "hidapi"; - version = "0.11.0.post2"; + version = "0.11.2"; src = fetchPypi { inherit pname version; - sha256 = "da815e0d1d4b2ef1ebbcc85034572105dca29627eb61881337aa39010f2ef8cb"; + sha256 = "sha256-yYS37C/C6ph81EzwaUflVXJJjtLUPGSJC0q1iymvcrw="; }; nativeBuildInputs = lib.optionals stdenv.isDarwin [ xcbuild ]; diff --git a/pkgs/development/python-modules/homeconnect/default.nix b/pkgs/development/python-modules/homeconnect/default.nix index b6fca4201ad..b615274416a 100644 --- a/pkgs/development/python-modules/homeconnect/default.nix +++ b/pkgs/development/python-modules/homeconnect/default.nix @@ -2,26 +2,33 @@ , buildPythonPackage , fetchPypi , requests -, requests_oauthlib +, requests-oauthlib +, pythonOlder }: buildPythonPackage rec { pname = "homeconnect"; version = "0.7.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-/h0dEVmP0R9tVt56mvu72Ksrvnuox1FA7BgrZMOhV6Q="; + hash = "sha256-/h0dEVmP0R9tVt56mvu72Ksrvnuox1FA7BgrZMOhV6Q="; }; propagatedBuildInputs = [ requests - requests_oauthlib + requests-oauthlib ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "homeconnect" ]; + + pythonImportsCheck = [ + "homeconnect" + ]; meta = with lib; { description = "Python client for the BSH Home Connect REST API"; diff --git a/pkgs/development/python-modules/hpack/default.nix b/pkgs/development/python-modules/hpack/default.nix index a5140a216cf..842c6d5f8bf 100644 --- a/pkgs/development/python-modules/hpack/default.nix +++ b/pkgs/development/python-modules/hpack/default.nix @@ -1,21 +1,34 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub +, pythonOlder +, hypothesis +, pytestCheckHook }: buildPythonPackage rec { pname = "hpack"; version = "4.0.0"; + disabled = pythonOlder "3.6"; - src = fetchPypi { - inherit pname version; - sha256 = "fc41de0c63e687ebffde81187a948221294896f6bdc0ae2312708df339430095"; + src = fetchFromGitHub { + owner = "python-hyper"; + repo = "hpack"; + rev = "v${version}"; + sha256 = "sha256-2CehGy3K5fKbkB1J8+8x1D4XvnBn1Mbapx+p8rdXDYc="; }; + checkInputs = [ + hypothesis + pytestCheckHook + ]; + + pythonImportsCheck = [ "hpack" ]; + meta = with lib; { description = "Pure-Python HPACK header compression"; - homepage = "http://hyper.rtfd.org"; + homepage = "https://github.com/python-hyper/hpack"; license = licenses.mit; + maintainers = with maintainers; [ SuperSandro2000 ]; }; - } diff --git a/pkgs/development/python-modules/html-sanitizer/default.nix b/pkgs/development/python-modules/html-sanitizer/default.nix index 111d7e00d1b..09539b590cb 100644 --- a/pkgs/development/python-modules/html-sanitizer/default.nix +++ b/pkgs/development/python-modules/html-sanitizer/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { owner = "matthiask"; repo = pname; rev = version; - sha256 = "sha256-1JSdi1PFM+N+UuEPfgWkOZw8S2PZ4ntadU0wnVJNnjw="; + hash = "sha256-1JSdi1PFM+N+UuEPfgWkOZw8S2PZ4ntadU0wnVJNnjw="; }; propagatedBuildInputs = [ @@ -31,7 +31,9 @@ buildPythonPackage rec { ]; disabledTests = [ + # Tests are sensitive to output "test_billion_laughs" + "test_10_broken_html" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/httpbin/default.nix b/pkgs/development/python-modules/httpbin/default.nix index 8359fcf0a09..a5a77a82af2 100644 --- a/pkgs/development/python-modules/httpbin/default.nix +++ b/pkgs/development/python-modules/httpbin/default.nix @@ -2,6 +2,7 @@ , brotlipy , buildPythonPackage , decorator +, fetchpatch , fetchPypi , flask , flask-limiter @@ -22,6 +23,15 @@ buildPythonPackage rec { hash = "sha256-y7N3kMkVdfTxV1f0KtQdn3KesifV7b6J5OwXVIbbjfo="; }; + patches = [ + (fetchpatch { + # Replaces BaseResponse class with Response class for Werkezug 2.1.0 compatibility + # https://github.com/postmanlabs/httpbin/pull/674 + url = "https://github.com/postmanlabs/httpbin/commit/5cc81ce87a3c447a127e4a1a707faf9f3b1c9b6b.patch"; + hash = "sha256-SbEWjiqayMFYrbgAPZtSsXqSyCDUz3z127XgcKOcrkE="; + }) + ]; + propagatedBuildInputs = [ brotlipy flask diff --git a/pkgs/development/python-modules/httplib2/default.nix b/pkgs/development/python-modules/httplib2/default.nix index 9fc6b4ff144..7f331c8edad 100644 --- a/pkgs/development/python-modules/httplib2/default.nix +++ b/pkgs/development/python-modules/httplib2/default.nix @@ -9,21 +9,20 @@ , pytest-forked , pytest-randomly , pytest-timeout -, pytest-xdist , pytestCheckHook , six }: buildPythonPackage rec { pname = "httplib2"; - version = "0.20.3"; + version = "0.20.4"; format = "setuptools"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-Q5KkhVqyHDoIeKjvvYoHRbZPY7LUXGDwgp4CSuyvQ1g="; + sha256 = "sha256-eLvxmG9PUX+2RB3M6oG442Wmh6c5GI/aKP/Z8Z5Ixq8="; }; propagatedBuildInputs = [ @@ -36,7 +35,6 @@ buildPythonPackage rec { pytest-forked pytest-randomly pytest-timeout - pytest-xdist six pytestCheckHook ]; diff --git a/pkgs/development/python-modules/hyperframe/default.nix b/pkgs/development/python-modules/hyperframe/default.nix index d10ecc6c075..e22dc0761a7 100644 --- a/pkgs/development/python-modules/hyperframe/default.nix +++ b/pkgs/development/python-modules/hyperframe/default.nix @@ -11,9 +11,12 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ "hyperframe" ]; + meta = with lib; { description = "HTTP/2 framing layer for Python"; - homepage = "http://hyper.rtfd.org/"; + homepage = "https://github.com/python-hyper/hyperframe/"; license = licenses.mit; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/hypothesis/default.nix b/pkgs/development/python-modules/hypothesis/default.nix index c928a13950c..8eaa808563e 100644 --- a/pkgs/development/python-modules/hypothesis/default.nix +++ b/pkgs/development/python-modules/hypothesis/default.nix @@ -19,7 +19,7 @@ buildPythonPackage rec { # If you need these, you can just add them to your environment. pname = "hypothesis"; - version = "6.38.0"; + version = "6.40.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -28,7 +28,7 @@ buildPythonPackage rec { owner = "HypothesisWorks"; repo = "hypothesis-python"; rev = "hypothesis-python-${version}"; - sha256 = "sha256-JLAM9gBf/Lh+UO7audy6V2jEPg5Cn4DR7moQV7VBwGc="; + hash = "sha256-6BC3CTotkMhguueH4NJM8VjbrYhofHqtZEUytcllMwQ="; }; postUnpack = "sourceRoot=$sourceRoot/hypothesis-python"; diff --git a/pkgs/development/python-modules/hypothesmith/default.nix b/pkgs/development/python-modules/hypothesmith/default.nix index 33174deb657..4bac9c0bb02 100644 --- a/pkgs/development/python-modules/hypothesmith/default.nix +++ b/pkgs/development/python-modules/hypothesmith/default.nix @@ -1,4 +1,13 @@ -{ lib, buildPythonPackage, fetchPypi, hypothesis, lark, libcst, black, parso, pytestCheckHook, pytest-cov, pytest-xdist }: +{ lib +, buildPythonPackage +, fetchPypi +, hypothesis +, lark +, libcst +, parso +, pytestCheckHook +, pytest-xdist +}: buildPythonPackage rec { pname = "hypothesmith"; @@ -9,17 +18,32 @@ buildPythonPackage rec { sha256 = "0fb7b3fd03d76eddd4474b0561e1c2662457593a74cc300fd27e5409cd4d7922"; }; + patches = [ + ./remove-black.patch + ]; + postPatch = '' - substituteInPlace setup.py --replace "lark-parser" "lark" + substituteInPlace setup.py \ + --replace "lark-parser" "lark" + + substituteInPlace tox.ini \ + --replace "--cov=hypothesmith" "" \ + --replace "--cov-branch" "" \ + --replace "--cov-report=term-missing:skip-covered" "" \ + --replace "--cov-fail-under=100" "" ''; propagatedBuildInputs = [ hypothesis lark libcst ]; - checkInputs = [ black parso pytestCheckHook pytest-cov pytest-xdist ]; + checkInputs = [ parso pytestCheckHook pytest-xdist ]; pytestFlagsArray = [ "-v" - "--numprocesses $NIX_BUILD_CORES" + ]; + + disabledTests = [ + # https://github.com/Zac-HD/hypothesmith/issues/21 + "test_source_code_from_libcst_node_type" ]; pythonImportsCheck = [ "hypothesmith" ]; diff --git a/pkgs/development/python-modules/hypothesmith/remove-black.patch b/pkgs/development/python-modules/hypothesmith/remove-black.patch new file mode 100644 index 00000000000..565f350b06b --- /dev/null +++ b/pkgs/development/python-modules/hypothesmith/remove-black.patch @@ -0,0 +1,88 @@ +diff --git a/tests/test_cst.py b/tests/test_cst.py +index c436183..bdba2d7 100644 +--- a/tests/test_cst.py ++++ b/tests/test_cst.py +@@ -3,7 +3,6 @@ import ast + from inspect import isabstract + from operator import attrgetter + +-import black + import libcst + import parso + import pytest +@@ -51,27 +50,6 @@ def test_ast_unparse_from_nodes(source_code): + assert ast.dump(first) == ast.dump(second) + + +-@pytest.mark.xfail +-@example("A\u2592", black.FileMode()) +-@given( +- source_code=hypothesmith.from_node(), +- mode=st.builds( +- black.FileMode, +- line_length=st.just(88) | st.integers(0, 200), +- string_normalization=st.booleans(), +- is_pyi=st.booleans(), +- ), +-) +-def test_black_autoformatter_from_nodes(source_code, mode): +- try: +- result = black.format_file_contents(source_code, fast=False, mode=mode) +- except black.NothingChanged: +- pass +- else: +- with pytest.raises(black.NothingChanged): +- black.format_file_contents(result, fast=False, mode=mode) +- +- + @given(source_code=hypothesmith.from_node()) + def test_from_node_always_compilable(source_code): + compile(source_code, "<string>", "exec") +diff --git a/tests/test_syntactic.py b/tests/test_syntactic.py +index 7ea42e9..a77ac39 100644 +--- a/tests/test_syntactic.py ++++ b/tests/test_syntactic.py +@@ -3,8 +3,6 @@ import ast + import io + import tokenize + +-import black +-import blib2to3 + import parso + import pytest + from hypothesis import example, given, reject, strategies as st +@@ -58,34 +56,6 @@ def test_ast_unparse_from_grammar(source_code): + assert ast.dump(first) == ast.dump(second) + + +-@example("\\", black.FileMode()) +-@example("A#\r#", black.FileMode()) +-@given( +- source_code=hypothesmith.from_grammar(), +- mode=st.builds( +- black.FileMode, +- line_length=st.just(88) | st.integers(0, 200), +- string_normalization=st.booleans(), +- is_pyi=st.booleans(), +- ), +-) +-def test_black_autoformatter_from_grammar(source_code, mode): +- try: +- result = black.format_file_contents(source_code, fast=False, mode=mode) +- except black.NothingChanged: +- pass +- except blib2to3.pgen2.tokenize.TokenError: +- # Fails to tokenise e.g. "\\", though compile("\\", "<string>", "exec") works. +- # See https://github.com/psf/black/issues/1012 +- reject() +- except black.InvalidInput: +- # e.g. "A#\r#", see https://github.com/psf/black/issues/970 +- reject() +- else: +- with pytest.raises(black.NothingChanged): +- black.format_file_contents(result, fast=False, mode=mode) +- +- + @given(source_code=hypothesmith.from_grammar("eval_input")) + def test_eval_input_generation(source_code): + compile(source_code, filename="<string>", mode="eval") diff --git a/pkgs/development/python-modules/ibis-framework/default.nix b/pkgs/development/python-modules/ibis-framework/default.nix index 61b944b4883..e25832fbfcb 100644 --- a/pkgs/development/python-modules/ibis-framework/default.nix +++ b/pkgs/development/python-modules/ibis-framework/default.nix @@ -119,7 +119,6 @@ buildPythonPackage rec { ]; pytestFlagsArray = [ - "--numprocesses $NIX_BUILD_CORES" "ibis/tests" "ibis/backends/tests" "ibis/backends/{${lib.concatStringsSep "," backends}}/tests" diff --git a/pkgs/development/python-modules/imap-tools/default.nix b/pkgs/development/python-modules/imap-tools/default.nix index 9d017b24223..a63754f0c09 100644 --- a/pkgs/development/python-modules/imap-tools/default.nix +++ b/pkgs/development/python-modules/imap-tools/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "imap-tools"; - version = "0.52.0"; + version = "0.54.0"; disabled = isPy27; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "ikvk"; repo = "imap_tools"; rev = "v${version}"; - hash = "sha256-la2+cpTnHZQn/FXtySp+3zDCBTONiLC16Tm+hDiIERc="; + hash = "sha256-RiKGxyCPYlAJ5YbxvEKxCYgUg1D9s29YSCT4tY3FIEE="; }; checkInputs = [ @@ -39,6 +39,7 @@ buildPythonPackage rec { meta = with lib; { description = "Work with email and mailbox by IMAP"; homepage = "https://github.com/ikvk/imap_tools"; + changelog = "https://github.com/ikvk/imap_tools/blob/v${version}/docs/release_notes.rst"; license = licenses.asl20; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/img2pdf/default.nix b/pkgs/development/python-modules/img2pdf/default.nix index 58e3db524a8..791edcb2fb2 100644 --- a/pkgs/development/python-modules/img2pdf/default.nix +++ b/pkgs/development/python-modules/img2pdf/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , isPy27 , fetchPypi -, fetchpatch , pikepdf , pillow , stdenv @@ -19,23 +18,14 @@ buildPythonPackage rec { pname = "img2pdf"; - version = "0.4.3"; + version = "0.4.4"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-jlHFBD76lddRSBtRYHGgBvh8KkBZlhqaxD7COJFd4J8="; + sha256 = "8ec898a9646523fd3862b154f3f47cd52609c24cc3e2dc1fb5f0168f0cbe793c"; }; - patches = [ - # Disable tests broken by Pillow 9.0.0 - # https://gitlab.mister-muffin.de/josch/img2pdf/issues/130#issuecomment-586 - (fetchpatch { - url = "https://salsa.debian.org/debian/img2pdf/-/raw/f77fefc81e7c4b235c47ae6777d222d391c59536/debian/patches/pillow9"; - sha256 = "sha256-8giZCuv5PzSbrBQqslNqiLOhgxbg3LsdBVwt+DWnvh4="; - }) - ]; - propagatedBuildInputs = [ pikepdf pillow diff --git a/pkgs/development/python-modules/importlib-metadata/default.nix b/pkgs/development/python-modules/importlib-metadata/default.nix index 31181d9b1af..26612ff924e 100644 --- a/pkgs/development/python-modules/importlib-metadata/default.nix +++ b/pkgs/development/python-modules/importlib-metadata/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "importlib-metadata"; - version = "4.11.2"; + version = "4.11.3"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "importlib_metadata"; inherit version; - hash = "sha256-s2/6kl/jE5svb/EdaSX/1Pp7xHhwFl46wmCse0+R5qw="; + hash = "sha256-6kxZfr83FC+Ce485KZV54xaFwx06Q4tZ9GlAav0PJTk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/importlib-resources/default.nix b/pkgs/development/python-modules/importlib-resources/default.nix index b28932a74f0..61fb5be068d 100644 --- a/pkgs/development/python-modules/importlib-resources/default.nix +++ b/pkgs/development/python-modules/importlib-resources/default.nix @@ -11,13 +11,14 @@ buildPythonPackage rec { pname = "importlib-resources"; - version = "5.4.0"; + version = "5.6.0"; + format = "pyproject"; disabled = isPy27; src = fetchPypi { pname = "importlib_resources"; inherit version; - sha256 = "sha256-11bi+F3U3iuom+CyHboqO77C6HGkKjoWcZJYoR+HUGs="; + sha256 = "sha256-G5MjjL8jtM3jQkDdgyHZnpvy60vJHAyZsohig+e6rYU="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/installer/default.nix b/pkgs/development/python-modules/installer/default.nix index a19f27a0a75..8749ea16132 100644 --- a/pkgs/development/python-modules/installer/default.nix +++ b/pkgs/development/python-modules/installer/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "installer"; - version = "0.3.0"; + version = "0.5.1"; format = "pyproject"; src = fetchFromGitHub { owner = "pradyunsg"; repo = pname; rev = version; - sha256 = "sha256-AxAQgDhRFkb0HB7ttDb+pHuHzwnNDX6UOm9rswzIwmI="; + sha256 = "sha256-vhZYUhUcD5fnjkyEqFMvggVGH9Ri8iNgqRgSBQTOCtM="; }; nativeBuildInputs = [ flit-core ]; diff --git a/pkgs/development/python-modules/intbitset/default.nix b/pkgs/development/python-modules/intbitset/default.nix index 798bdbbd251..9cedf7c4d28 100644 --- a/pkgs/development/python-modules/intbitset/default.nix +++ b/pkgs/development/python-modules/intbitset/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "intbitset"; - version = "3.0.0"; + version = "3.0.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-tDG3CAlTZvz9Pi2pLq0TEPhl3DyYuWQS1N6VNNNokEE="; + sha256 = "sha256-8ebQPGcpkioiPFGEnfZbnpFuYlrvuRF4Tn+azUwgfVM="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/intensity-normalization/default.nix b/pkgs/development/python-modules/intensity-normalization/default.nix index 5e658953fc8..86bc21c488d 100644 --- a/pkgs/development/python-modules/intensity-normalization/default.nix +++ b/pkgs/development/python-modules/intensity-normalization/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "intensity-normalization"; - version = "2.2.0"; + version = "2.2.3"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -23,7 +23,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "intensity_normalization"; inherit version; - sha256 = "sha256-0tc21NBj3Cajklk9mWbKfBzbSwjUrBWs/SlakjEHC1U="; + sha256 = "sha256-Yjd4hXmbT87xNKSqc6zkKNisOVhQzQAUZI5wBiI/UBk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix index fe67c73cbad..d7302eaaecb 100644 --- a/pkgs/development/python-modules/ipykernel/default.nix +++ b/pkgs/development/python-modules/ipykernel/default.nix @@ -3,35 +3,37 @@ , callPackage , fetchPypi , pythonOlder -, argcomplete , ipython , jupyter-client +, packaging +, psutil , tornado , traitlets }: buildPythonPackage rec { pname = "ipykernel"; - version = "6.9.1"; + version = "6.12.1"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+VBwot/TFH+KsZ8Y7kZzMxCBN1hZN0XgfsGPsItAnx0="; + sha256 = "sha256-CGj1VhcpreREAR+Mp9NQLcnyf39E4g8dX+5+Hytxg6E="; }; # debugpy is optional, see https://github.com/ipython/ipykernel/pull/767 postPatch = '' - substituteInPlace setup.py \ - --replace "'debugpy>=1.0.0,<2.0'," "" + sed -i "/debugpy/d" setup.py ''; propagatedBuildInputs = [ ipython jupyter-client + packaging + psutil tornado traitlets - ] ++ lib.optionals (pythonOlder "3.8") [ - argcomplete ]; # check in passthru.tests.pytest to escape infinite recursion with ipyparallel diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix index 24fd28a16f7..0a39950689d 100644 --- a/pkgs/development/python-modules/ipython/default.nix +++ b/pkgs/development/python-modules/ipython/default.nix @@ -10,7 +10,6 @@ # Runtime dependencies , appnope , backcall -, black , decorator , jedi , matplotlib-inline @@ -28,13 +27,13 @@ buildPythonPackage rec { pname = "ipython"; - version = "8.1.0"; + version = "8.2.0"; format = "pyproject"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-QsI+kLLequYxJmiF3hZWpRehZz1+HbV+jrOku2zVzhs="; + sha256 = "sha256-cOXrEyysWUo0tfeZvSUliQCZBfBRBHKK6mpAPsJRncE="; }; buildInputs = [ @@ -43,7 +42,6 @@ buildPythonPackage rec { propagatedBuildInputs = [ backcall - black decorator jedi matplotlib-inline @@ -83,7 +81,7 @@ buildPythonPackage rec { meta = with lib; { description = "IPython: Productive Interactive Computing"; - homepage = "http://ipython.org/"; + homepage = "https://ipython.org/"; license = licenses.bsd3; maintainers = with maintainers; [ bjornfor fridh ]; }; diff --git a/pkgs/development/python-modules/ipywidgets/default.nix b/pkgs/development/python-modules/ipywidgets/default.nix index c324eea947d..b33ec2759b5 100644 --- a/pkgs/development/python-modules/ipywidgets/default.nix +++ b/pkgs/development/python-modules/ipywidgets/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "ipywidgets"; - version = "7.6.5"; + version = "7.7.0"; src = fetchPypi { inherit pname version; - sha256 = "00974f7cb4d5f8d494c19810fedb9fa9b64bffd3cda7c2be23c133a1ad3c99c5"; + sha256 = "sha256-q0pVloVaiLg3YZIcdocH1l5YRwaBObwXKd3+g0cDVCo="; }; # Tests are not distributed diff --git a/pkgs/development/python-modules/islpy/default.nix b/pkgs/development/python-modules/islpy/default.nix index 67b547b724e..b37a2b55b2d 100644 --- a/pkgs/development/python-modules/islpy/default.nix +++ b/pkgs/development/python-modules/islpy/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "islpy"; - version = "2022.1.1"; + version = "2022.1.2"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-eWNc1xxOqEmPdSC1Ha6tfM8ofgkudfOGjvp3ZyM4pxE="; + sha256 = "sha256-Z0LXmbQeCyBPP0mtnt+UFyi08tcfP9XLZUS8jzkrADo="; }; postConfigure = '' diff --git a/pkgs/development/python-modules/iso8601/default.nix b/pkgs/development/python-modules/iso8601/default.nix index a5eb03dc8eb..14cef7c62a8 100644 --- a/pkgs/development/python-modules/iso8601/default.nix +++ b/pkgs/development/python-modules/iso8601/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchPypi , hypothesis +, poetry-core , pytestCheckHook , pytz , pythonOlder @@ -10,7 +11,7 @@ buildPythonPackage rec { pname = "iso8601"; version = "1.0.2"; - format = "setuptools"; + format = "pyproject"; disabled = pythonOlder "3.6"; @@ -19,6 +20,10 @@ buildPythonPackage rec { sha256 = "sha256-J/UDIg5oRdnblU+yErlbA2LYt+bBsjJqhwYcPek1lLE="; }; + nativeBuildInputs = [ + poetry-core + ]; + checkInputs = [ hypothesis pytestCheckHook diff --git a/pkgs/development/python-modules/iterm2/default.nix b/pkgs/development/python-modules/iterm2/default.nix index 1cba03531b5..1742fc08e1e 100644 --- a/pkgs/development/python-modules/iterm2/default.nix +++ b/pkgs/development/python-modules/iterm2/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "iterm2"; - version = "1.30"; + version = "2.1"; src = fetchPypi { inherit pname version; - sha256 = "148b32a593f3d932a33daad01fdaa4639918eca74a6e153d9729dd8b3cba3345"; + sha256 = "sha256-oEXDW+ar3S0gJn2DdaOyq6GDE9dJaghQEpPBCfTL2Kw="; }; propagatedBuildInputs = [ protobuf websockets ]; diff --git a/pkgs/development/python-modules/itsdangerous/default.nix b/pkgs/development/python-modules/itsdangerous/default.nix index c2050c6f79c..99bdb965235 100644 --- a/pkgs/development/python-modules/itsdangerous/default.nix +++ b/pkgs/development/python-modules/itsdangerous/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "itsdangerous"; - version = "2.1.0"; + version = "2.1.2"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-2Ej8uLx9UHxFRrRIV06KRPxOorqE6/jXgykNU+gZkvU="; + sha256 = "sha256-XbvGizF+XkLzJ/kCF2NUXcP8O/4i5t65aq8fw4h0FWo="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/jarowinkler/default.nix b/pkgs/development/python-modules/jarowinkler/default.nix new file mode 100644 index 00000000000..3985a22d5bc --- /dev/null +++ b/pkgs/development/python-modules/jarowinkler/default.nix @@ -0,0 +1,54 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, cmake +, cython +, rapidfuzz-capi +, scikit-build +, hypothesis +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "jarowinkler"; + version = "1.0.2"; + + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "maxbachmann"; + repo = "JaroWinkler"; + rev = "v${version}"; + fetchSubmodules = true; + hash = "sha256-zVAcV6xxqyfXRUcyWo9PcOdagcexJc/D5k4g5ag3hbY="; + }; + + nativeBuildInputs = [ + cmake + cython + rapidfuzz-capi + scikit-build + ]; + + dontUseCmakeConfigure = true; + + checkInputs = [ + hypothesis + pytestCheckHook + ]; + + preCheck = '' + # import from $out + rm -r jarowinkler + ''; + + pythonImportsCheck = [ "jarowinkler" ]; + + meta = with lib; { + description = "Library for fast approximate string matching using Jaro and Jaro-Winkler similarity"; + homepage = "https://github.com/maxbachmann/JaroWinkler"; + license = licenses.mit; + maintainers = with maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/jax/default.nix b/pkgs/development/python-modules/jax/default.nix index 94be46b3aeb..e4e9139216e 100644 --- a/pkgs/development/python-modules/jax/default.nix +++ b/pkgs/development/python-modules/jax/default.nix @@ -3,6 +3,7 @@ , blas , buildPythonPackage , fetchFromGitHub +, fetchpatch , jaxlib , lapack , numpy @@ -19,7 +20,7 @@ let in buildPythonPackage rec { pname = "jax"; - version = "0.3.5"; + version = "0.3.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -28,12 +29,18 @@ buildPythonPackage rec { owner = "google"; repo = pname; rev = "jax-v${version}"; - hash = "sha256-c+5r0Xvd2zrIVF9VG+yve5QDvCcfMiOYp6JqaabowhA="; + hash = "sha256-eGdAEZFHadNTHgciP4KMYHdwksz9g6un0Ar+A/KV5TE="; }; patches = [ # See https://github.com/google/jax/issues/7944 ./cache-fix.patch + + # See https://github.com/google/jax/issues/10292 + (fetchpatch { + url = "https://github.com/google/jax/commit/cadc8046d56e0c1433cf48a2f106947d5f4ecbfd.patch"; + hash = "sha256-jrpIqt4LzWAswt/Cpwtfa5d1Yn31HcXkVH3ETmaigA0="; + }) ]; # jaxlib is _not_ included in propagatedBuildInputs because there are @@ -54,21 +61,27 @@ buildPythonPackage rec { pytest-xdist ]; + # high parallelism will result in the tests getting stuck + dontUsePytestXdist = true; + # NOTE: Don't run the tests in the expiremental directory as they require flax # which creates a circular dependency. See https://discourse.nixos.org/t/how-to-nix-ify-python-packages-with-circular-dependencies/14648/2. # Not a big deal, this is how the JAX docs suggest running the test suite # anyhow. pytestFlagsArray = [ - "-n auto" + "--numprocesses=4" "-W ignore::DeprecationWarning" "tests/" ]; - # See - # * https://github.com/google/jax/issues/9705 - # * https://discourse.nixos.org/t/getting-different-results-for-the-same-build-on-two-equally-configured-machines/17921 - # * https://github.com/NixOS/nixpkgs/issues/161960 - disabledTests = lib.optionals usingMKL [ + disabledTests = [ + # Exceeds tolerance when the machine is busy + "test_custom_linear_solve_aux" + ] ++ lib.optionals usingMKL [ + # See + # * https://github.com/google/jax/issues/9705 + # * https://discourse.nixos.org/t/getting-different-results-for-the-same-build-on-two-equally-configured-machines/17921 + # * https://github.com/NixOS/nixpkgs/issues/161960 "test_custom_linear_solve_cholesky" "test_custom_root_with_aux" "testEigvalsGrad_shape" diff --git a/pkgs/development/python-modules/jaxlib/default.nix b/pkgs/development/python-modules/jaxlib/default.nix index 2f1d54178a3..002858a8fa1 100644 --- a/pkgs/development/python-modules/jaxlib/default.nix +++ b/pkgs/development/python-modules/jaxlib/default.nix @@ -55,6 +55,8 @@ let homepage = "https://github.com/google/jax"; license = licenses.asl20; maintainers = with maintainers; [ ndl ]; + platforms = [ "x86_64-linux" "aarch64-darwin" "x86_64-darwin"]; + hydraPlatforms = ["x86_64-linux" ]; # Don't think anybody is checking the darwin builds }; cudatoolkit_joined = symlinkJoin { diff --git a/pkgs/development/python-modules/jinja2/default.nix b/pkgs/development/python-modules/jinja2/default.nix index 7c9971b0c45..29b08df8e0f 100644 --- a/pkgs/development/python-modules/jinja2/default.nix +++ b/pkgs/development/python-modules/jinja2/default.nix @@ -10,12 +10,13 @@ buildPythonPackage rec { pname = "Jinja2"; - version = "3.0.3"; - disabled = pythonOlder "3.6"; + version = "3.1.1"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "611bb273cd68f3b993fabdc4064fc858c5b47a973cb5aa7999ec1ba405c87cd7"; + sha256 = "sha256-ZAvtS7UBy9FxlLPKzh3CEm9bYZzwaKcmuYGSoP3nSuk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/jira/default.nix b/pkgs/development/python-modules/jira/default.nix index b22f5ccd73a..c6b1386adec 100644 --- a/pkgs/development/python-modules/jira/default.nix +++ b/pkgs/development/python-modules/jira/default.nix @@ -5,37 +5,39 @@ , flaky , keyring , requests-mock -, requests_oauthlib +, requests-oauthlib , requests-toolbelt , setuptools-scm , setuptools-scm-git-archive , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "jira"; version = "3.1.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "pycontribs"; repo = pname; rev = version; - sha256 = "04s2zgwxip54g894hps2cm081cp07mbi7qipmsv4dvailhsg43nn"; + hash = "sha256-1g7yNKRR7Ua2rjfiE1c94LKAQGVCX0gSeqTc2Pn7QhM="; }; - postPatch = '' - substituteInPlace setup.cfg \ - --replace "--cov-report=xml --cov jira" "" - ''; - - nativeBuildInputs = [ setuptools-scm setuptools-scm-git-archive ]; + nativeBuildInputs = [ + setuptools-scm + setuptools-scm-git-archive + ]; SETUPTOOLS_SCM_PRETEND_VERSION = version; propagatedBuildInputs = [ defusedxml keyring - requests_oauthlib + requests-oauthlib requests-toolbelt ]; @@ -45,11 +47,20 @@ buildPythonPackage rec { requests-mock ]; + postPatch = '' + substituteInPlace setup.cfg \ + --replace "--cov-report=xml --cov jira" "" + ''; + + pythonImportsCheck = [ + "jira" + ]; + # impure tests because of connectivity attempts to jira servers doCheck = false; meta = with lib; { - description = "This library eases the use of the JIRA REST API from Python."; + description = "Library to interact with the JIRA REST API"; homepage = "https://github.com/pycontribs/jira"; license = licenses.bsd2; maintainers = with maintainers; [ globin ]; diff --git a/pkgs/development/python-modules/jmespath/default.nix b/pkgs/development/python-modules/jmespath/default.nix index 3f74ae8d810..18c2f46216f 100644 --- a/pkgs/development/python-modules/jmespath/default.nix +++ b/pkgs/development/python-modules/jmespath/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "jmespath"; - version = "0.10.0"; + version = "1.0.0"; src = fetchPypi { inherit pname version; - sha256 = "b85d0567b8666149a93172712e68920734333c0ce7e89b78b3e987f71e5ed4f9"; + sha256 = "sha256-pJDigO3R9X1t6IY2mS0Ftx6X1pomoZ8Fjs99MER0v14="; }; buildInputs = [ nose ]; diff --git a/pkgs/development/python-modules/josepy/default.nix b/pkgs/development/python-modules/josepy/default.nix index 036b60e9eca..100228bf4f1 100644 --- a/pkgs/development/python-modules/josepy/default.nix +++ b/pkgs/development/python-modules/josepy/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "josepy"; - version = "1.12.0"; + version = "1.13.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "267004a64f08c016cd54b7aaf7c323fa3ef3679fb62f4b086cd56448d0fecb25"; + sha256 = "sha256-iTHa84+KTIUnSg6LfLJa3f2NHyj5+4++0FPdUa7HXck="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/json-schema-for-humans/default.nix b/pkgs/development/python-modules/json-schema-for-humans/default.nix index a9faf437f80..8fb0e2dd40c 100644 --- a/pkgs/development/python-modules/json-schema-for-humans/default.nix +++ b/pkgs/development/python-modules/json-schema-for-humans/default.nix @@ -31,6 +31,11 @@ buildPythonPackage rec { hash = "sha256-H0jvOnrWE4/xxRYNehshHBRNc/qLX1+sCV7O1ACCdew="; }; + postPatch = '' + substituteInPlace pyproject.toml \ + --replace 'pytz = "^2021.1"' 'pytz = "*"' + ''; + nativeBuildInputs = [ poetry-core ]; @@ -54,12 +59,6 @@ buildPythonPackage rec { pytestCheckHook ]; - postPatch = '' - # https://github.com/coveooss/json-schema-for-humans/issues/127 - substituteInPlace pyproject.toml \ - --replace 'PyYAML = "^5.4.1"' 'PyYAML = "*"' - ''; - disabledTests = [ # Tests require network access "test_references_url" diff --git a/pkgs/development/python-modules/junos-eznc/default.nix b/pkgs/development/python-modules/junos-eznc/default.nix index 426b990ccac..d693c73130b 100644 --- a/pkgs/development/python-modules/junos-eznc/default.nix +++ b/pkgs/development/python-modules/junos-eznc/default.nix @@ -1,43 +1,77 @@ { lib , buildPythonPackage -, fetchPypi -, six -, scp -, pyserial -, paramiko -, netaddr +, fetchpatch +, fetchFromGitHub + +# propagates +, jinja2 +, lxml , ncclient +, netaddr , ntc-templates -, lxml -, jinja2 +, paramiko +, pyparsing +, pyserial , pyyaml +, scp +, six , transitions , yamlordereddictloader + +# tests +, mock , nose +, pytestCheckHook }: buildPythonPackage rec { pname = "junos-eznc"; version = "2.6.3"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "4eee93d0af203af7cee54a8f0c7bd28af683e829edf1fd68feba85d0ad737395"; + src = fetchFromGitHub { + owner = "Juniper"; + repo = "py-junos-eznc"; + rev = version; + hash = "sha256-XhQJwtS518AzSwyaWE392nfNdYe9+iYHvXxQsjJfzI8="; }; + patches = [ + (fetchpatch { + # Fixes tests with lxml>=4.8.0; remove > 2.6.3 + url = "https://github.com/Juniper/py-junos-eznc/commit/048f750bb7357b6f6b9db8ad64bea479298c74fb.patch"; + hash = "sha256-DYVj0BNPwDSbxDrzHhaq4F4kz1bliXB6Au3I63mRauc="; + }) + ]; + postPatch = '' substituteInPlace requirements.txt \ --replace "ncclient==0.6.9" "ncclient" ''; - checkInputs = [ nose ]; - propagatedBuildInputs = [ - scp six pyserial paramiko netaddr ncclient ntc-templates lxml jinja2 pyyaml transitions yamlordereddictloader + jinja2 + lxml + ncclient + netaddr + ntc-templates + paramiko + pyparsing + pyserial + pyyaml + scp + six + transitions + yamlordereddictloader + ]; + + checkInputs = [ + mock + nose ]; checkPhase = '' - nosetests -v --with-coverage --cover-package=jnpr.junos --cover-inclusive -a unit + nosetests -v -a unit --exclude=test_sw_put_ftp ''; pythonImportsCheck = [ "jnpr.junos" ]; diff --git a/pkgs/development/python-modules/jupyter-client/default.nix b/pkgs/development/python-modules/jupyter-client/default.nix index 23580f42bf5..2670fc163f6 100644 --- a/pkgs/development/python-modules/jupyter-client/default.nix +++ b/pkgs/development/python-modules/jupyter-client/default.nix @@ -14,11 +14,11 @@ buildPythonPackage rec { pname = "jupyter_client"; - version = "7.1.2"; + version = "7.2.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-TqYQM3Jsjlee21VibY7i5r8KgxWN3zdRuN1GssXNHpY="; + sha256 = "sha256-qhdyeekyBdBoHsDi4hDaAbIsWhRkpWq9RVrcrGTw3pE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyter-packaging/default.nix b/pkgs/development/python-modules/jupyter-packaging/default.nix index f3fd7747ff8..bb2837d28fc 100644 --- a/pkgs/development/python-modules/jupyter-packaging/default.nix +++ b/pkgs/development/python-modules/jupyter-packaging/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "jupyter-packaging"; - version = "0.11.1"; + version = "0.12.0"; disabled = pythonOlder "3.7"; src = fetchPypi { pname = "jupyter_packaging"; inherit version; - sha256 = "6f5c7eeea98f7f3c8fb41d565a94bf59791768a93f93148b3c2dfb7ebade8eec"; + sha256 = "sha256-snRV1grck6e6ouC484a+gbkyu048ARYEbfntIwzT+qw="; }; propagatedBuildInputs = [ deprecation packaging tomlkit ]; diff --git a/pkgs/development/python-modules/jupyter_console/default.nix b/pkgs/development/python-modules/jupyter_console/default.nix index 9716fbe8e5d..5a3176b462c 100644 --- a/pkgs/development/python-modules/jupyter_console/default.nix +++ b/pkgs/development/python-modules/jupyter_console/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "jupyter_console"; - version = "6.4.0"; + version = "6.4.3"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "242248e1685039cd8bff2c2ecb7ce6c1546eb50ee3b08519729e6e881aec19c7"; + sha256 = "sha256-VfMmJrC+ZHqF4yF93Nsi22nvx56LQDuXceuezGlgGbU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyterlab-git/default.nix b/pkgs/development/python-modules/jupyterlab-git/default.nix index dc909f798da..9f36e03d488 100644 --- a/pkgs/development/python-modules/jupyterlab-git/default.nix +++ b/pkgs/development/python-modules/jupyterlab-git/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "jupyterlab-git"; - version = "0.34.2"; + version = "0.36.0"; disabled = pythonOlder "3.6"; src = fetchPypi { pname = "jupyterlab_git"; inherit version; - sha256 = "sha256-WNBhuHF3rhAWZED4di9B9Loq+shRzpJuaAOOcND1YEE="; + sha256 = "sha256-K+h1ra9PsqKlSSPnc1jgSODICv3FoEdwqBGYWQYs6wE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jupyterlab_server/default.nix b/pkgs/development/python-modules/jupyterlab_server/default.nix index ed0fe4bca2d..bcd06ebffb3 100644 --- a/pkgs/development/python-modules/jupyterlab_server/default.nix +++ b/pkgs/development/python-modules/jupyterlab_server/default.nix @@ -16,12 +16,12 @@ buildPythonPackage rec { pname = "jupyterlab_server"; - version = "2.10.3"; + version = "2.12.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "3fb84a5813d6d836ceda773fb2d4e9ef3c7944dbc1b45a8d59d98641a80de80a"; + sha256 = "sha256-AOD0tMOZ9Vk4Mj6hDPktkVKI/hJ1PjXRBp9soItyq78="; }; postPatch = '' diff --git a/pkgs/development/python-modules/kaldi-active-grammar/default.nix b/pkgs/development/python-modules/kaldi-active-grammar/default.nix index 46fc619b4cb..a1ef7e31465 100644 --- a/pkgs/development/python-modules/kaldi-active-grammar/default.nix +++ b/pkgs/development/python-modules/kaldi-active-grammar/default.nix @@ -5,6 +5,7 @@ , cmake , ush , requests +, six , numpy , cffi , openfst @@ -12,6 +13,11 @@ , callPackage }: +# +# Maintainer note: only in-tree dependant is `dragonfly`, try to +# update the two alongside eachother. +# + let kaldi = callPackage ./fork.nix { }; in @@ -48,7 +54,7 @@ buildPythonPackage rec { buildInputs = [ openfst kaldi ]; nativeBuildInputs = [ scikit-build cmake ]; - propagatedBuildInputs = [ ush requests numpy cffi ]; + propagatedBuildInputs = [ ush requests numpy cffi six ]; doCheck = false; # no tests exist diff --git a/pkgs/development/python-modules/kbcstorage/default.nix b/pkgs/development/python-modules/kbcstorage/default.nix new file mode 100644 index 00000000000..913b7981edd --- /dev/null +++ b/pkgs/development/python-modules/kbcstorage/default.nix @@ -0,0 +1,69 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub + +# build +, setuptools-scm + +# propagates +, azure-storage-blob +, boto3 +, requests + +# tests +, responses +, python +}: + +buildPythonPackage rec { + pname = "sapi-python-client"; + version = "0.4.1"; + format = "setuptools"; + + src = fetchFromGitHub { + owner = "keboola"; + repo = pname; + rev = version; + sha256 = "189dzj06vzp7366h2qsfvbjmw9qgl7jbp8syhynn9yvrjqp4k8h3"; + }; + + SETUPTOOLS_SCM_PRETEND_VERSION = version; + + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + azure-storage-blob + boto3 + requests + ]; + + # requires API token and an active keboola bucket + # ValueError: Root URL is required. + doCheck = false; + + checkInputs = [ + responses + ]; + + checkPhase = '' + runHook preCheck + ${python.interpreter} -m unittest discover + runHook postCheck + ''; + + pythonImportsCheck = [ + "kbcstorage" + "kbcstorage.buckets" + "kbcstorage.client" + "kbcstorage.tables" + ]; + + meta = with lib; { + description = "Keboola Connection Storage API client"; + homepage = "https://github.com/keboola/sapi-python-client"; + maintainers = with maintainers; [ mrmebelman ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/kiss-headers/default.nix b/pkgs/development/python-modules/kiss-headers/default.nix index 0ceced85cac..43d1f784fab 100644 --- a/pkgs/development/python-modules/kiss-headers/default.nix +++ b/pkgs/development/python-modules/kiss-headers/default.nix @@ -2,14 +2,14 @@ buildPythonPackage rec { pname = "kiss-headers"; - version = "2.3.0"; + version = "2.3.1"; format = "setuptools"; src = fetchFromGitHub { owner = "Ousret"; repo = pname; - rev = version; - sha256 = "sha256-/eTRyxFyAKQMzE/JjdoEN3w0lRiaIJcsJHTWV8M0CYQ="; + rev = "refs/tags/${version}"; + sha256 = "sha256-xPjw/uJTmvmQZDrI3i1KTUeAZuDF1mc13hvFBl8Erh0="; }; propagatedBuildInputs = [ requests ]; diff --git a/pkgs/development/python-modules/kivy-garden/default.nix b/pkgs/development/python-modules/kivy-garden/default.nix index edfad0c9b91..1475b444823 100644 --- a/pkgs/development/python-modules/kivy-garden/default.nix +++ b/pkgs/development/python-modules/kivy-garden/default.nix @@ -1,29 +1,31 @@ { lib -, buildPythonPackage, fetchPypi +, buildPythonPackage +, fetchFromGitHub , requests }: buildPythonPackage rec { pname = "kivy-garden"; - version = "0.1.4"; + version = "0.1.5"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "0wkcpr2zc1q5jb0bi7v2dgc0vs5h1y7j42mviyh764j2i0kz8mn2"; + src = fetchFromGitHub { + owner = "kivy-garden"; + repo = "garden"; + rev = "v${version}"; + hash = "sha256-xOMBPFKV7mTa51Q0VKja7b0E509IaWjwlJVlSRVdct8="; }; propagatedBuildInputs = [ requests ]; pythonImportsCheck = [ "garden" ]; - # There are no tests in the Pypi archive and building from source is not - # easily feasible because the build is done using buildozer and multiple - # repositories. + # There are no tests doCheck = false; meta = with lib; { description = "The kivy garden installation script, split into its own package for convenient use in buildozer."; - homepage = "https://pypi.python.org/pypi/kivy-garden"; + homepage = "https://github.com/kivy-garden/garden"; license = licenses.mit; maintainers = with maintainers; [ risson ]; }; diff --git a/pkgs/development/python-modules/kiwisolver/default.nix b/pkgs/development/python-modules/kiwisolver/default.nix index e5649c58e46..b968fa3a50a 100644 --- a/pkgs/development/python-modules/kiwisolver/default.nix +++ b/pkgs/development/python-modules/kiwisolver/default.nix @@ -4,30 +4,42 @@ , stdenv , libcxx , cppy +, setuptools-scm +, pythonOlder }: buildPythonPackage rec { pname = "kiwisolver"; - version = "1.3.2"; + version = "1.4.2"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "fc4453705b81d03568d5b808ad8f09c77c47534f6ac2e72e733f9ca4714aa75c"; + hash = "sha256-f2BtkbiogWvkdlE6d/0wq+ZiJwOb1vi0BsNIywJH3Mk="; }; - NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin "-I${lib.getDev libcxx}/include/c++/v1"; + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.isDarwin [ + "-I${lib.getDev libcxx}/include/c++/v1" + ]; nativeBuildInputs = [ + setuptools-scm + ]; + + buildInputs = [ cppy ]; - # Does not include tests - doCheck = false; + pythonImportsCheck = [ + "kiwisolver" + ]; - meta = { - description = "A fast implementation of the Cassowary constraint solver"; + meta = with lib; { + description = "Implementation of the Cassowary constraint solver"; homepage = "https://github.com/nucleic/kiwi"; - license = lib.licenses.bsd3; + license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/kubernetes/default.nix b/pkgs/development/python-modules/kubernetes/default.nix index 8508e5178f5..61333cc52bd 100644 --- a/pkgs/development/python-modules/kubernetes/default.nix +++ b/pkgs/development/python-modules/kubernetes/default.nix @@ -11,7 +11,7 @@ , python-dateutil , pyyaml , requests -, requests_oauthlib +, requests-oauthlib , urllib3 , websocket-client @@ -24,6 +24,7 @@ buildPythonPackage rec { pname = "kubernetes"; version = "20.13.0"; format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { @@ -41,7 +42,7 @@ buildPythonPackage rec { python-dateutil pyyaml requests - requests_oauthlib + requests-oauthlib urllib3 websocket-client ]; @@ -61,7 +62,7 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "Kubernetes python client"; + description = "Kubernetes Python client"; homepage = "https://github.com/kubernetes-client/python"; license = licenses.asl20; maintainers = with maintainers; [ lsix ]; diff --git a/pkgs/development/python-modules/levenshtein/default.nix b/pkgs/development/python-modules/levenshtein/default.nix index e5f743e0fe1..ebc1c511375 100644 --- a/pkgs/development/python-modules/levenshtein/default.nix +++ b/pkgs/development/python-modules/levenshtein/default.nix @@ -2,14 +2,17 @@ , buildPythonPackage , fetchFromGitHub , pythonOlder +, cmake +, cython , pytestCheckHook , rapidfuzz +, scikit-build }: buildPythonPackage rec { pname = "levenshtein"; version = "0.18.1"; - format = "setuptools"; + format = "pyproject"; disabled = pythonOlder "3.6"; @@ -17,13 +20,18 @@ buildPythonPackage rec { owner = "maxbachmann"; repo = "Levenshtein"; rev = "v${version}"; - sha256 = "sha256-3p9LM4tv45bqeTsuyngivqfd5uml7uqGB2ICKqPa0qY="; + # https://github.com/maxbachmann/Levenshtein/issues/22 + fetchSubmodules = true; + sha256 = "sha256-WREYdD5MFOpCzH4BSceRpzQZdpi3Xxxn0DpMvDsNlGo="; }; - postPatch = '' - substituteInPlace setup.cfg \ - --replace "rapidfuzz >= 1.8.2, < 1.9" "rapidfuzz" - ''; + nativeBuildInputs = [ + cmake + cython + scikit-build + ]; + + dontUseCmakeConfigure = true; propagatedBuildInputs = [ rapidfuzz diff --git a/pkgs/development/python-modules/lightwave2/default.nix b/pkgs/development/python-modules/lightwave2/default.nix index f840a2186cf..4501eb664e9 100644 --- a/pkgs/development/python-modules/lightwave2/default.nix +++ b/pkgs/development/python-modules/lightwave2/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "lightwave2"; - version = "0.8.1"; + version = "0.8.4"; format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-UULOQawsY2N0xxYlgIZKs8Xyl0XDqC6fSSKvo8ZBEcY="; + sha256 = "sha256-WB5U8VjUKx2hCcJX2JeFgEiwzweGzROEK3pox3l/wrE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/limits/default.nix b/pkgs/development/python-modules/limits/default.nix index 47738b23dc4..7cb622df047 100644 --- a/pkgs/development/python-modules/limits/default.nix +++ b/pkgs/development/python-modules/limits/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "limits"; - version = "2.3.3"; + version = "2.4.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-1CcNKVkcxezqsZvgU0VaTmGbo5UGJQK94rVoGvfcG+g="; + sha256 = "sha256-jiK2PfJjECB6d7db1HRZnwpGE6fZFjZQ7TpCjpzHrjU="; }; propagatedBuildInputs = [ six ]; diff --git a/pkgs/development/python-modules/lmnotify/default.nix b/pkgs/development/python-modules/lmnotify/default.nix index 4e5526a424d..bf9d857dc74 100644 --- a/pkgs/development/python-modules/lmnotify/default.nix +++ b/pkgs/development/python-modules/lmnotify/default.nix @@ -3,28 +3,39 @@ , fetchPypi , oauthlib , requests -, requests_oauthlib +, requests-oauthlib +, pythonOlder }: buildPythonPackage rec { pname = "lmnotify"; version = "0.0.6"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-cCP7BU2f7QJe9gAI298cvkp3OGijvBv8G1RN7qfZ5PE="; + hash = "sha256-cCP7BU2f7QJe9gAI298cvkp3OGijvBv8G1RN7qfZ5PE="; }; - propagatedBuildInputs = [ oauthlib requests requests_oauthlib ]; + propagatedBuildInputs = [ + oauthlib + requests + requests-oauthlib + ]; - doCheck = false; # no tests exist + # Module has no tests + doCheck = false; - pythonImportsCheck = [ "lmnotify" ]; + pythonImportsCheck = [ + "lmnotify" + ]; meta = with lib; { description = "Python package for sending notifications to LaMetric Time"; homepage = "https://github.com/keans/lmnotify"; - maintainers = with maintainers; [ rhoriguchi ]; license = licenses.mit; + maintainers = with maintainers; [ rhoriguchi ]; }; } diff --git a/pkgs/development/python-modules/lxmf/default.nix b/pkgs/development/python-modules/lxmf/default.nix index 9650c5d8957..c6044844a62 100644 --- a/pkgs/development/python-modules/lxmf/default.nix +++ b/pkgs/development/python-modules/lxmf/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "lxmf"; - version = "0.1.4"; + version = "0.1.5"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -15,8 +15,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "markqvist"; repo = "lxmf"; - rev = version; - hash = "sha256-kWawKlEAnn/uNjM2TT2aVW2V4M0+S/1Ysrw/muJhC0s="; + rev = "refs/tags/${version}"; + hash = "sha256-9JG/EnL7vW4P7QiT6Xa0GLfmu1JeM0dlFSp3VRE47NI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mailchecker/default.nix b/pkgs/development/python-modules/mailchecker/default.nix index ab609b597a4..61e4c3d21f0 100644 --- a/pkgs/development/python-modules/mailchecker/default.nix +++ b/pkgs/development/python-modules/mailchecker/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "mailchecker"; - version = "4.1.13"; + version = "4.1.15"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-4ez18K9ksVGjzspHHcw/Ja6hxoKTkYLBFn65m7VBWYk="; + hash = "sha256-DOtLJKNvmj5dlveZX9sScfJZa3SY7GH7xfZHhIsybVQ="; }; # Module has no tests diff --git a/pkgs/development/python-modules/markupsafe/default.nix b/pkgs/development/python-modules/markupsafe/default.nix index b0f876ef3e8..0c36299b1f1 100644 --- a/pkgs/development/python-modules/markupsafe/default.nix +++ b/pkgs/development/python-modules/markupsafe/default.nix @@ -7,13 +7,15 @@ buildPythonPackage rec { pname = "markupsafe"; - version = "2.1.0"; - disabled = pythonOlder "3.6"; + version = "2.1.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { pname = "MarkupSafe"; inherit version; - sha256 = "sha256-gL6vY937xkoEUrhB2ANsoGEeBJZQ4gr8uIL108Jm1l8="; + sha256 = "sha256-f5EZfMnkj5idEuTm+8RklcRGY238gbnM9Quw7HS5HUs="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix b/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix index 9887f42bd8f..e7921a29f54 100644 --- a/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix +++ b/pkgs/development/python-modules/marshmallow-sqlalchemy/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "marshmallow-sqlalchemy"; - version = "0.27.0"; + version = "0.28.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "1521b129564444648c523a38f6446c137f1aae5c9c7de1ec151d5ebf03fd407d"; + sha256 = "sha256-+2sGaG84/sLqDsU6XuSXkhlAnisiYPm8keS0MQXRl4I="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/matchpy/default.nix b/pkgs/development/python-modules/matchpy/default.nix index 8ee3d60f801..efcf1741ab4 100644 --- a/pkgs/development/python-modules/matchpy/default.nix +++ b/pkgs/development/python-modules/matchpy/default.nix @@ -1,11 +1,9 @@ { lib , buildPythonPackage -, fetchpatch -, fetchPypi +, fetchFromGitHub , hopcroftkarp , multiset -, pytest -, pytest-runner +, pytestCheckHook , hypothesis , setuptools-scm , isPy27 @@ -13,37 +11,45 @@ buildPythonPackage rec { pname = "matchpy"; - version = "0.5.1"; + version = "0.5.5"; # Don't upgrade to 4.3.1, this tag is very old disabled = isPy27; - src = fetchPypi { - inherit pname version; - sha256 = "1vvf1cd9kw5z1mzvypc9f030nd18lgvvjc8j56b1s9b7dyslli2r"; + src = fetchFromGitHub { + owner = "HPAC"; + repo = pname; + rev = version; + hash = "sha256-n5rXIjqVQZzEbfIZVQiGLh2PR1DHAJ9gumcrbvwnasA="; }; - patches = [ - # Fix tests for pytest 4. Remove with the next release - (fetchpatch { - url = "https://github.com/HPAC/matchpy/commit/b405a2717a7793d58c47b2e2197d9d00c06fb13c.patch"; - includes = [ "tests/conftest.py" ]; - sha256 = "1b6gqf2vy9qxg384nqr9k8il335afhbdmlyx4vhd8r8rqpv7gax9"; - }) - ]; - postPatch = '' + sed -i '/pytest-runner/d' setup.cfg + substituteInPlace setup.cfg \ - --replace "hypothesis>=3.6,<4.0" "hypothesis" \ - --replace "pytest>=3.0,<4.0" "pytest" + --replace "multiset>=2.0,<3.0" "multiset" ''; - buildInputs = [ setuptools-scm pytest-runner ]; - checkInputs = [ pytest hypothesis ]; - propagatedBuildInputs = [ hopcroftkarp multiset ]; + nativeBuildInputs = [ + setuptools-scm + ]; + + propagatedBuildInputs = [ + hopcroftkarp + multiset + ]; + + checkInputs = [ + pytestCheckHook + hypothesis + ]; + + pythonImportsCheck = [ + "matchpy" + ]; meta = with lib; { description = "A library for pattern matching on symbolic expressions"; homepage = "https://github.com/HPAC/matchpy"; license = licenses.mit; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/mccabe/default.nix b/pkgs/development/python-modules/mccabe/default.nix index f20cb18b488..f47e4e4d4b6 100644 --- a/pkgs/development/python-modules/mccabe/default.nix +++ b/pkgs/development/python-modules/mccabe/default.nix @@ -1,15 +1,27 @@ -{ lib, buildPythonPackage, fetchPypi, pytest, pytest-runner }: +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, hypothesis +, hypothesmith +, python +}: buildPythonPackage rec { pname = "mccabe"; - version = "0.6.1"; + version = "0.7.0"; src = fetchPypi { inherit pname version; - sha256 = "07w3p1qm44hgxf3vvwz84kswpsx6s7kvaibzrsx5dzm0hli1i3fx"; + sha256 = "sha256-NI4CQMM7YLvfTlIxku+RnyjLLD19XHeU90AJKQ8jYyU="; }; - buildInputs = [ pytest pytest-runner ]; + buildInputs = [ + pytest + ]; + + # https://github.com/PyCQA/mccabe/issues/93 + doCheck = false; meta = with lib; { description = "McCabe checker, plugin for flake8"; diff --git a/pkgs/development/python-modules/merkletools/default.nix b/pkgs/development/python-modules/merkletools/default.nix index 92acdaf58ed..a57f926a615 100644 --- a/pkgs/development/python-modules/merkletools/default.nix +++ b/pkgs/development/python-modules/merkletools/default.nix @@ -15,6 +15,6 @@ buildPythonPackage rec { description = "Python tools for creating Merkle trees, generating Merkle proofs, and verification of Merkle proofs"; homepage = "https://github.com/Tierion/pymerkletools"; license = licenses.mit; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; }; } diff --git a/pkgs/development/python-modules/metakernel/default.nix b/pkgs/development/python-modules/metakernel/default.nix index f94ddb12ac5..417b4d914e6 100644 --- a/pkgs/development/python-modules/metakernel/default.nix +++ b/pkgs/development/python-modules/metakernel/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "metakernel"; - version = "0.28.2"; + version = "0.29.0"; src = fetchPypi { inherit pname version; - sha256 = "8811a4497444495639ef000902f4c6e8a7e2c57da1d47a8a24bcc9083548b389"; + sha256 = "sha256-+B8ywp7q42g8H+BPFK+D1VyLfyqgnrYIN3ai/mdcwcA="; }; propagatedBuildInputs = [ ipykernel ]; diff --git a/pkgs/development/python-modules/meteofrance-api/default.nix b/pkgs/development/python-modules/meteofrance-api/default.nix index dadd872adcd..5e738adb62b 100644 --- a/pkgs/development/python-modules/meteofrance-api/default.nix +++ b/pkgs/development/python-modules/meteofrance-api/default.nix @@ -43,6 +43,12 @@ buildPythonPackage rec { requests-mock ]; + postPatch = '' + # https://github.com/hacf-fr/meteofrance-api/pull/378 + substituteInPlace pyproject.toml \ + --replace 'pytz = ">=2020.4,<2022.0"' 'pytz = ">=2020.4,<2023.0"' + ''; + pythonImportsCheck = [ "meteofrance_api" ]; diff --git a/pkgs/development/python-modules/mezzanine/default.nix b/pkgs/development/python-modules/mezzanine/default.nix index 83085d76a36..6607dc0739d 100644 --- a/pkgs/development/python-modules/mezzanine/default.nix +++ b/pkgs/development/python-modules/mezzanine/default.nix @@ -1,38 +1,56 @@ { lib - +, beautifulsoup4 +, bleach , buildPythonPackage -, fetchPypi -, isPyPy -, pyflakes -, pep8 +, chardet , django , django_contrib_comments +, fetchPypi , filebrowser_safe -, grappelli_safe -, bleach -, tzlocal -, beautifulsoup4 -, requests -, requests_oauthlib , future +, grappelli_safe +, isPyPy +, pep8 , pillow -, chardet +, pyflakes +, pythonOlder +, requests +, requests-oauthlib +, tzlocal }: buildPythonPackage rec { + pname = "mezzanine"; version = "5.1.3"; - pname = "Mezzanine"; + format = "setuptools"; + + disabled = pythonOlder "3.6" || isPyPy; src = fetchPypi { - inherit pname version; - sha256 = "sha256-G/Oj5g70tFUhnbSVElVk0s9Ka+MEuPsEgj6blcFBOoY="; + pname = "Mezzanine"; + inherit version; + hash = "sha256-G/Oj5g70tFUhnbSVElVk0s9Ka+MEuPsEgj6blcFBOoY="; }; - disabled = isPyPy || lib.versionOlder django.version "1.11" - || lib.versionAtLeast django.version "2.0"; + buildInputs = [ + pyflakes + pep8 + ]; - buildInputs = [ pyflakes pep8 ]; - propagatedBuildInputs = [ django django_contrib_comments filebrowser_safe grappelli_safe bleach tzlocal beautifulsoup4 requests requests_oauthlib future pillow chardet ]; + propagatedBuildInputs = [ + beautifulsoup4 + bleach + chardet + django + django_contrib_comments + filebrowser_safe + future + grappelli_safe + pillow + requests + requests-oauthlib + tzlocal + ]; # Tests Fail Due to Syntax Warning, Fixed for v3.1.11+ doCheck = false; @@ -41,12 +59,10 @@ buildPythonPackage rec { sed -i 's/==/>=/' setup.py ''; - LC_ALL="en_US.UTF-8"; + LC_ALL = "en_US.UTF-8"; meta = with lib; { - description = '' - A content management platform built using the Django framework - ''; + description = "Content management platform built using the Django framework"; longDescription = '' Mezzanine is a powerful, consistent, and flexible content management platform. Built using the Django framework, Mezzanine @@ -64,11 +80,9 @@ buildPythonPackage rec { ''; homepage = "http://mezzanine.jupo.org/"; downloadPage = "https://github.com/stephenmcd/mezzanine/releases"; - license = licenses.free; + license = licenses.bsd2; maintainers = with maintainers; [ prikhi ]; platforms = platforms.unix; - # mezzanine requires django-1.11. Consider overriding python package set to use django_1_11" - broken = versionOlder django.version "1.11" || versionAtLeast django.version "2.0"; }; - } + diff --git a/pkgs/development/python-modules/mitmproxy/default.nix b/pkgs/development/python-modules/mitmproxy/default.nix index f3b24ffabff..055cb8aee99 100644 --- a/pkgs/development/python-modules/mitmproxy/default.nix +++ b/pkgs/development/python-modules/mitmproxy/default.nix @@ -111,6 +111,7 @@ buildPythonPackage rec { # Tests require terminal "test_integration" ]; + dontUsePytestXdist = true; pythonImportsCheck = [ "mitmproxy" ]; diff --git a/pkgs/development/python-modules/mkdocs-material/default.nix b/pkgs/development/python-modules/mkdocs-material/default.nix index dc67a515824..41eff2026b9 100644 --- a/pkgs/development/python-modules/mkdocs-material/default.nix +++ b/pkgs/development/python-modules/mkdocs-material/default.nix @@ -9,13 +9,13 @@ buildPythonApplication rec { pname = "mkdocs-material"; - version = "8.2.7"; + version = "8.2.9"; src = fetchFromGitHub { owner = "squidfunk"; repo = pname; rev = version; - sha256 = "sha256-Jh0FmtBCYCEk6mYFLOKb1HQXQ4Wc9Z6JCHFVu420IBk="; + sha256 = "sha256-lrklTQWWsP1rjixqu5/S7XMN+K095NRGv3JkjRQ4brM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocs/default.nix b/pkgs/development/python-modules/mkdocs/default.nix index 7d4f1cc66c6..13604bc975a 100644 --- a/pkgs/development/python-modules/mkdocs/default.nix +++ b/pkgs/development/python-modules/mkdocs/default.nix @@ -3,7 +3,6 @@ lib , buildPythonPackage , fetchFromGitHub -, fetchpatch , pythonOlder # runtime deps , click @@ -24,24 +23,16 @@ buildPythonPackage rec { pname = "mkdocs"; - version = "1.2.3"; + version = "1.3.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-LBw2ftGyeNvARQ8xiYUho8BiQh+aIEqROP51gKvNxEo="; + sha256 = "sha256-S4xkr3jS5GvkMu8JnEGfqhmkxy3FtZZb7Rbuniltudg="; }; - patches = [ - (fetchpatch { - url = "https://github.com/mkdocs/mkdocs/commit/c93fc91e4dc0ef33e2ea418aaa32b0584a8d354a.patch"; - sha256 = "sha256-7uLIuQOt6KU/+iS9cwhXkWPAHzZkQdMyNBxSMut5WK4="; - excludes = [ "tox.ini" ]; - }) - ]; - propagatedBuildInputs = [ click jinja2 diff --git a/pkgs/development/python-modules/mock/default.nix b/pkgs/development/python-modules/mock/default.nix index 72e40d750ed..464a6ae969d 100644 --- a/pkgs/development/python-modules/mock/default.nix +++ b/pkgs/development/python-modules/mock/default.nix @@ -1,31 +1,30 @@ { lib , buildPythonPackage , fetchPypi -, isPy27 -, funcsigs -, six -, pbr +, fetchpatch , python +, pythonOlder , pytest }: buildPythonPackage rec { pname = "mock"; version = "4.0.3"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; sha256 = "7d3fbbde18228f4ff2f1f119a45cdffa458b4c0dee32eb4d2bb2f82554bac7bc"; }; - propagatedBuildInputs = [ six pbr ] ++ lib.optionals isPy27 [ funcsigs ]; - - # On PyPy for Python 2.7 in particular, Mock's tests have a known failure. - # Mock upstream has a decoration to disable the failing test and make - # everything pass, but it is not yet released. The commit: - # https://github.com/testing-cabal/mock/commit/73bfd51b7185#diff-354f30a63fb0907d4ad57269548329e3L12 - #doCheck = !(python.isPyPy && python.isPy27); - doCheck = false; # Infinite recursion pytest + patches = [ + (fetchpatch { + url = "https://github.com/testing-cabal/mock/commit/f3e3d82aab0ede7e25273806dc0505574d85eae2.patch"; + sha256 = "sha256-wPrv1/WeICZHn31UqFlICFsny2knvn3+Xg8BZoaGbwQ="; + }) + ]; checkPhase = '' ${python.interpreter} -m unittest discover @@ -37,8 +36,7 @@ buildPythonPackage rec { meta = with lib; { description = "Mock objects for Python"; - homepage = "http://python-mock.sourceforge.net/"; + homepage = "https://github.com/testing-cabal/mock"; license = licenses.bsd2; }; - } diff --git a/pkgs/development/python-modules/modeled/default.nix b/pkgs/development/python-modules/modeled/default.nix index acf8ee4c112..c49077d2181 100644 --- a/pkgs/development/python-modules/modeled/default.nix +++ b/pkgs/development/python-modules/modeled/default.nix @@ -4,7 +4,7 @@ , zetup , six , moretools -, pathpy +, path , pytestCheckHook }: @@ -20,7 +20,7 @@ buildPythonPackage rec { buildInputs = [ zetup ]; - propagatedBuildInputs = [ six moretools pathpy ]; + propagatedBuildInputs = [ six moretools path ]; checkInputs = [ pytestCheckHook ]; diff --git a/pkgs/development/python-modules/moretools/default.nix b/pkgs/development/python-modules/moretools/default.nix index 5a96682accd..01f6b58a947 100644 --- a/pkgs/development/python-modules/moretools/default.nix +++ b/pkgs/development/python-modules/moretools/default.nix @@ -1,5 +1,5 @@ { lib, buildPythonPackage, fetchPypi -, six, pathpy, zetup, pytest +, six, path, zetup, pytest , decorator }: buildPythonPackage rec { @@ -16,7 +16,7 @@ buildPythonPackage rec { ''; nativeBuildInputs = [ zetup ]; - checkInputs = [ six pathpy pytest ]; + checkInputs = [ six path pytest ]; propagatedBuildInputs = [ decorator ]; meta = with lib; { diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix index f920a06488a..7f3251a6cc2 100644 --- a/pkgs/development/python-modules/moto/default.nix +++ b/pkgs/development/python-modules/moto/default.nix @@ -35,14 +35,14 @@ buildPythonPackage rec { pname = "moto"; - version = "3.0.5"; + version = "3.1.3"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-hfLs4K0DBaoTo5E5zmSKs6/hwEyzKsHbjV5ekRfU0Q4="; + sha256 = "sha256-+kgVlfVhHZ/r2vCg0Skwe1433mh2w30DXO7+Rs59isA="; }; propagatedBuildInputs = [ @@ -71,14 +71,11 @@ buildPythonPackage rec { checkInputs = [ freezegun - pytest-xdist pytestCheckHook sure ]; pytestFlagsArray = [ - "--numprocesses $NIX_BUILD_CORES" - # Disable tests that try to access the network "--deselect=tests/test_cloudformation/test_cloudformation_custom_resources.py::test_create_custom_lambda_resource__verify_cfnresponse_failed" "--deselect=tests/test_cloudformation/test_server.py::test_cloudformation_server_get" @@ -92,9 +89,24 @@ buildPythonPackage rec { "--deselect=tests/test_sqs/test_sqs_integration.py::test_invoke_function_from_sqs_exception" "--deselect=tests/test_stepfunctions/test_stepfunctions.py::test_state_machine_creation_fails_with_invalid_names" "--deselect=tests/test_stepfunctions/test_stepfunctions.py::test_state_machine_list_executions_with_pagination" + "--deselect=tests/test_iotdata/test_iotdata.py::test_update" + "--deselect=tests/test_iotdata/test_iotdata.py::test_basic" + "--deselect=tests/test_iotdata/test_iotdata.py::test_delete_field_from_device_shadow" + "--deselect=tests/test_iotdata/test_iotdata.py::test_publish" + "--deselect=tests/test_s3/test_server.py::test_s3_server_bucket_versioning" # json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0) "--deselect=tests/test_cloudformation/test_cloudformation_stack_integration.py::test_lambda_function" + + # AssertionError: CloudWatch log event was not found. + "--deselect=tests/test_logs/test_integration.py::test_subscription_filter_applies_to_new_streams" + + # KeyError: 'global' + "--deselect=tests/test_iotdata/test_server.py::test_iotdata_list" + "--deselect=tests/test_iotdata/test_server.py::test_publish" + + # Blocks test execution + "--deselect=tests/test_utilities/test_threaded_server.py::TestThreadedMotoServer::test_load_data_from_inmemory_client" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/msrest/default.nix b/pkgs/development/python-modules/msrest/default.nix index 6eb6e49cddd..da130f289fd 100644 --- a/pkgs/development/python-modules/msrest/default.nix +++ b/pkgs/development/python-modules/msrest/default.nix @@ -1,51 +1,66 @@ { lib +, aiodns +, aiohttp , buildPythonPackage -, fetchFromGitHub -, isPy3k -, requests -, requests_oauthlib -, isodate , certifi -, enum34 ? null -, typing -, aiohttp -, aiodns -, pytest +, fetchFromGitHub , httpretty -, mock -, futures ? null +, isodate +, pytest-aiohttp +, pytestCheckHook +, pythonOlder +, requests +, requests-oauthlib , trio }: buildPythonPackage rec { - version = "0.6.21"; pname = "msrest"; + version = "0.6.21"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; - # no tests in PyPI tarball - # see https://github.com/Azure/msrest-for-python/pull/152 src = fetchFromGitHub { owner = "Azure"; repo = "msrest-for-python"; rev = "v${version}"; - sha256 = "sha256-IlBwlVQ/v+vJmCWNbFZKGL6a9K09z4AYrPm3kwaA/nI="; + hash = "sha256-IlBwlVQ/v+vJmCWNbFZKGL6a9K09z4AYrPm3kwaA/nI="; }; propagatedBuildInputs = [ - requests requests_oauthlib isodate certifi - ] ++ lib.optionals (!isPy3k) [ enum34 typing ] - ++ lib.optionals isPy3k [ aiohttp aiodns ]; + aiodns + aiohttp + certifi + isodate + requests + requests-oauthlib + ]; + + checkInputs = [ + httpretty + pytest-aiohttp + pytestCheckHook + trio + ]; - checkInputs = [ pytest httpretty ] - ++ lib.optionals (!isPy3k) [ mock futures ] - ++ lib.optional isPy3k trio; + disabledTests = [ + # Test require network access + "test_basic_aiohttp" + "test_basic_aiohttp" + "test_basic_async_requests" + "test_basic_async_requests" + "test_conf_async_requests" + "test_conf_async_requests" + "test_conf_async_trio_requests" + ]; - # Deselected tests require network access - checkPhase = '' - pytest tests/ -k "not test_conf_async_trio_requests" - ''; + pythonImportsCheck = [ + "msrest" + ]; meta = with lib; { - description = "The runtime library 'msrest' for AutoRest generated Python clients."; + description = "The runtime library for AutoRest generated Python clients"; homepage = "https://github.com/Azure/msrest-for-python"; license = licenses.mit; maintainers = with maintainers; [ bendlas jonringer maxwilson ]; diff --git a/pkgs/development/python-modules/mwclient/default.nix b/pkgs/development/python-modules/mwclient/default.nix index bffc4247632..da260251e9f 100644 --- a/pkgs/development/python-modules/mwclient/default.nix +++ b/pkgs/development/python-modules/mwclient/default.nix @@ -1,11 +1,21 @@ -{ lib, buildPythonPackage, fetchFromGitHub -, requests, requests_oauthlib, six -, pytest, pytestcache, pytest-cov, responses, mock +{ lib +, buildPythonPackage +, fetchFromGitHub +, mock +, pytestCheckHook +, pythonOlder +, requests +, requests-oauthlib +, responses +, six }: buildPythonPackage rec { version = "0.10.1"; pname = "mwclient"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "mwclient"; @@ -14,17 +24,31 @@ buildPythonPackage rec { sha256 = "120snnsh9n5svfwkyj1w9jrxf99jnqm0jk282yypd3lpyca1l9hj"; }; - checkInputs = [ pytest pytestcache pytest-cov responses mock ]; + propagatedBuildInputs = [ + requests + requests-oauthlib + six + ]; - propagatedBuildInputs = [ requests requests_oauthlib six ]; + checkInputs = [ + mock + pytestCheckHook + responses + ]; - checkPhase = '' - py.test + postPatch = '' + substituteInPlace setup.cfg \ + --replace " --cov mwclient test" "" ''; + pythonImportsCheck = [ + "mwclient" + ]; + meta = with lib; { description = "Python client library to the MediaWiki API"; license = licenses.mit; homepage = "https://github.com/mwclient/mwclient"; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/mwoauth/default.nix b/pkgs/development/python-modules/mwoauth/default.nix index 8743329917e..0a12052abc7 100644 --- a/pkgs/development/python-modules/mwoauth/default.nix +++ b/pkgs/development/python-modules/mwoauth/default.nix @@ -1,40 +1,47 @@ { lib , buildPythonPackage -, six +, fetchPypi +, oauthlib , pyjwt +, pythonOlder , requests -, oauthlib -, requests_oauthlib -, fetchPypi +, requests-oauthlib +, six }: buildPythonPackage rec { pname = "mwoauth"; version = "0.3.7"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "9e0d70a1fa6f452584de1cb853ae6c11f41233549f7839cfb879f99410f6ad46"; + hash = "sha256-ng1wofpvRSWE3hy4U65sEfQSM1SfeDnPuHn5lBD2rUY="; }; propagatedBuildInputs = [ oauthlib pyjwt requests - requests_oauthlib + requests-oauthlib six ]; postPatch = '' # https://github.com/mediawiki-utilities/python-mwoauth/pull/43 - substituteInPlace setup.py --replace "PyJWT>=1.0.1,<2.0.0" "PyJWT>=1.0.1" + substituteInPlace setup.py \ + --replace "PyJWT>=1.0.1,<2.0.0" "PyJWT>=1.0.1" ''; # PyPI source has no tests included # https://github.com/mediawiki-utilities/python-mwoauth/issues/44 doCheck = false; - pythonImportsCheck = [ "mwoauth" ]; + pythonImportsCheck = [ + "mwoauth" + ]; meta = with lib; { description = "Python library to perform OAuth handshakes with a MediaWiki installation"; diff --git a/pkgs/development/python-modules/myfitnesspal/default.nix b/pkgs/development/python-modules/myfitnesspal/default.nix index f6df7b88f85..791cb708be5 100644 --- a/pkgs/development/python-modules/myfitnesspal/default.nix +++ b/pkgs/development/python-modules/myfitnesspal/default.nix @@ -9,6 +9,7 @@ , python-dateutil , requests , rich +, typing-extensions , pytestCheckHook , mock , nose @@ -36,6 +37,7 @@ buildPythonPackage rec { python-dateutil requests rich + typing-extensions ]; checkInputs = [ diff --git a/pkgs/development/python-modules/mypy-boto3-s3/default.nix b/pkgs/development/python-modules/mypy-boto3-s3/default.nix index 4f33912d3df..fe0933f7bd9 100644 --- a/pkgs/development/python-modules/mypy-boto3-s3/default.nix +++ b/pkgs/development/python-modules/mypy-boto3-s3/default.nix @@ -8,19 +8,18 @@ buildPythonPackage rec { pname = "mypy-boto3-s3"; - version = "1.21.7"; + version = "1.21.34"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-SWzL6AMXoZzYw3LwrBdvbe9JzLMudZioKZWo7HtHM8U="; + hash = "sha256-gXvMC+GZknL+jYG9ZQD1/dqRhMwXrZvXG8CvCFYxdco="; }; propagatedBuildInputs = [ boto3 - ] ++ lib.optionals (pythonOlder "3.9") [ typing-extensions ]; diff --git a/pkgs/development/python-modules/nbclient/default.nix b/pkgs/development/python-modules/nbclient/default.nix index 52478ad4fd6..1b2071e7f0c 100644 --- a/pkgs/development/python-modules/nbclient/default.nix +++ b/pkgs/development/python-modules/nbclient/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "nbclient"; - version = "0.5.11"; + version = "0.5.13"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-dRUWmS80tYFyutVO7x5L9+T0Rg1Y4lXKGk5clklHYAc="; + sha256 = "sha256-QMUsm148MfrsruafICs/U+ONfBxWPeD63enX7aD9r+g="; }; inherit doCheck; diff --git a/pkgs/development/python-modules/nbconvert/default.nix b/pkgs/development/python-modules/nbconvert/default.nix index 8604698cc2a..5a89210170f 100644 --- a/pkgs/development/python-modules/nbconvert/default.nix +++ b/pkgs/development/python-modules/nbconvert/default.nix @@ -5,6 +5,7 @@ , glibcLocales , entrypoints , bleach +, beautifulsoup4 , mistune , nbclient , jinja2 @@ -23,11 +24,11 @@ buildPythonPackage rec { pname = "nbconvert"; - version = "6.4.2"; + version = "6.4.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-6ygD2xj2+szmvzsBtoT+R5B5lL0VbRXqzN8BHj1/gWQ="; + sha256 = "sha256-IRY6jiBzwHEJyo85iDbkXv26KqzqaNb3WopUX+8HDU4="; }; # Add $out/share/jupyter to the list of paths that are used to search for @@ -45,7 +46,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ entrypoints bleach mistune jinja2 pygments traitlets testpath jupyter_core nbformat ipykernel pandocfilters tornado jupyter-client - defusedxml + defusedxml beautifulsoup4 (nbclient.override { doCheck = false; }) # avoid infinite recursion jupyterlab-pygments ]; diff --git a/pkgs/development/python-modules/nbformat/default.nix b/pkgs/development/python-modules/nbformat/default.nix index a8e6993d645..e110934fdd1 100644 --- a/pkgs/development/python-modules/nbformat/default.nix +++ b/pkgs/development/python-modules/nbformat/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "nbformat"; - version = "5.1.3"; + version = "5.2.0"; src = fetchPypi { inherit pname version; - sha256 = "b516788ad70771c6250977c1374fcca6edebe6126fd2adb5a69aa5c2356fd1c8"; + sha256 = "sha256-k98LnGciHTj7lwxI9tNhgZpsOIKZoO8xcbu5Eu3+EyQ="; }; LC_ALL="en_US.utf8"; diff --git a/pkgs/development/python-modules/ncclient/default.nix b/pkgs/development/python-modules/ncclient/default.nix index 2cb040ed8a3..3457c71af4c 100644 --- a/pkgs/development/python-modules/ncclient/default.nix +++ b/pkgs/development/python-modules/ncclient/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "ncclient"; - version = "0.6.12"; + version = "0.6.13"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "1sjvqaxb54nmqljiw5bg1423msa9rg015wiix9fsm6djk3wpklmk"; + sha256 = "sha256-NrilXB1NFcqNCGrwshhuLdhQoeHJ12PSp4MBScT9kYc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ndg-httpsclient/default.nix b/pkgs/development/python-modules/ndg-httpsclient/default.nix index 0082b8e8db2..39429950b71 100644 --- a/pkgs/development/python-modules/ndg-httpsclient/default.nix +++ b/pkgs/development/python-modules/ndg-httpsclient/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, pyasn1 , pyopenssl }: @@ -8,8 +9,6 @@ buildPythonPackage rec { version = "0.5.1"; pname = "ndg-httpsclient"; - propagatedBuildInputs = [ pyopenssl ]; - src = fetchFromGitHub { owner = "cedadev"; repo = "ndg_httpsclient"; @@ -17,6 +16,12 @@ buildPythonPackage rec { sha256 = "0lhsgs4am4xyjssng5p0vkfwqncczj1dpa0vss4lrhzq86mnn5rz"; }; + + propagatedBuildInputs = [ + pyasn1 + pyopenssl + ]; + # uses networking doCheck = false; diff --git a/pkgs/development/python-modules/netmiko/default.nix b/pkgs/development/python-modules/netmiko/default.nix index 0934439f747..3081b5a6b7c 100644 --- a/pkgs/development/python-modules/netmiko/default.nix +++ b/pkgs/development/python-modules/netmiko/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "netmiko"; - version = "3.4.0"; + version = "4.0.0"; src = fetchPypi { inherit pname version; - sha256 = "14s9c6ws32swizcmfdqmlkkk2yqw6071ybq3w94fhkl6jzfvkbdc"; + sha256 = "sha256-fVhBkiO1JpqMIFl32xlwSjeCd7aObocXPAr069fKdmc="; }; buildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/networkx/default.nix b/pkgs/development/python-modules/networkx/default.nix index c876c0d549d..140eb9bb24c 100644 --- a/pkgs/development/python-modules/networkx/default.nix +++ b/pkgs/development/python-modules/networkx/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "networkx"; # upgrade may break sage, please test the sage build or ping @timokau on upgrade - version = "2.7"; + version = "2.7.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-7/t9nNXDbh4NM/QqOu9brd5QMFNYJqNn1c9gihcK9RU="; + sha256 = "sha256-0RlLp1Pl7tB83s0dI8XNejx3IJm9jb0v6jZniM9N57o="; }; propagatedBuildInputs = [ decorator setuptools ]; diff --git a/pkgs/development/python-modules/nextcord/default.nix b/pkgs/development/python-modules/nextcord/default.nix index ab814061b58..5f499725913 100644 --- a/pkgs/development/python-modules/nextcord/default.nix +++ b/pkgs/development/python-modules/nextcord/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "nextcord"; - version = "2.0.0a9"; + version = "2.0.0a10"; format = "setuptools"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "nextcord"; repo = "nextcord"; rev = version; - hash = "sha256-9UJLfSYud/pIkIkJ75jE3pxsYm5bKNNRCwjDerDHp9c="; + hash = "sha256-p99WJ4y2iJQTI3wHbh+jwJyLnE3aBXnHxrehDYYek/4="; }; patches = [ diff --git a/pkgs/development/python-modules/nipype/neurdflib.nix b/pkgs/development/python-modules/nipype/neurdflib.nix index 0a266ff7bf8..8095b0fb040 100644 --- a/pkgs/development/python-modules/nipype/neurdflib.nix +++ b/pkgs/development/python-modules/nipype/neurdflib.nix @@ -3,7 +3,7 @@ , fetchPypi , isodate , html5lib -, SPARQLWrapper +, sparqlwrapper , networkx , nose , python @@ -18,7 +18,7 @@ buildPythonPackage rec { sha256 = "d34493cee15029ff5db16157429585ff863ba5542675a4d8a94a0da1bc6e3a50"; }; - propagatedBuildInputs = [ isodate html5lib SPARQLWrapper ]; + propagatedBuildInputs = [ isodate html5lib sparqlwrapper ]; checkInputs = [ networkx nose ]; diff --git a/pkgs/development/python-modules/nocasedict/default.nix b/pkgs/development/python-modules/nocasedict/default.nix index 982f2abe880..d9140d591c8 100644 --- a/pkgs/development/python-modules/nocasedict/default.nix +++ b/pkgs/development/python-modules/nocasedict/default.nix @@ -1,5 +1,8 @@ -{ lib, buildPythonPackage, fetchPypi -, pytest +{ lib +, buildPythonPackage +, fetchPypi +, pytestCheckHook +, six }: buildPythonPackage rec { @@ -11,8 +14,12 @@ buildPythonPackage rec { sha256 = "sha256-giC5e6BrCOst7e13TEBsd+DKDVNSrnEkn2+dHyoXvXs="; }; + propagatedBuildInputs = [ + six + ]; + checkInputs = [ - pytest + pytestCheckHook ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/notebook/default.nix b/pkgs/development/python-modules/notebook/default.nix index 586257a4f8d..3ead3cf4fe2 100644 --- a/pkgs/development/python-modules/notebook/default.nix +++ b/pkgs/development/python-modules/notebook/default.nix @@ -27,12 +27,12 @@ buildPythonPackage rec { pname = "notebook"; - version = "6.4.8"; + version = "6.4.10"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "sha256-Hphcncb2eL3/+53GVzBrVGm/pi1z4D906N77920oQxI="; + sha256 = "sha256-JAina8YokoOo7s/KZ+KY7IPGfbUaTC4bcT3RgLs56Q4="; }; LC_ALL = "en_US.utf8"; diff --git a/pkgs/development/python-modules/numpydoc/default.nix b/pkgs/development/python-modules/numpydoc/default.nix index ea092d01dd4..b770ac26fbd 100644 --- a/pkgs/development/python-modules/numpydoc/default.nix +++ b/pkgs/development/python-modules/numpydoc/default.nix @@ -1,23 +1,54 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 +{ lib +, buildPythonPackage +, fetchPypi +, isPy27 , jinja2 -, nose -, pytest , sphinx +, pytestCheckHook +, matplotlib }: buildPythonPackage rec { pname = "numpydoc"; - version = "1.2"; + version = "1.2.1"; + format = "setuptools"; + disabled = isPy27; src = fetchPypi { inherit pname; inherit version; - sha256 = "sha256-DOwjN0DGsSWRMAXRboqZluBgUor8uLfK0/JwZinf1vc="; + sha256 = "sha256-fOgm7Q1Uw/3JCXmSqNc6TUWdxGhhE1HGjkRP7ESkWvY="; }; - checkInputs = [ nose pytest ]; - propagatedBuildInputs = [ sphinx jinja2 ]; + postPatch = '' + substituteInPlace setup.py \ + --replace "Jinja2>=2.10,<3.1" "Jinja2>=2.10,<3.2" + substituteInPlace setup.cfg \ + --replace "--cov-report=" "" \ + --replace "--cov=numpydoc" "" + ''; + + propagatedBuildInputs = [ + jinja2 + sphinx + ]; + + checkInputs = [ + matplotlib + pytestCheckHook + ]; + + disabledTests = [ + # https://github.com/numpy/numpydoc/issues/373 + "test_MyClass" + "test_my_function" + "test_reference" + ]; + + pythonImportsCheck = [ + "numpydoc" + ]; meta = { description = "Sphinx extension to support docstrings in Numpy format"; diff --git a/pkgs/development/python-modules/nunavut/default.nix b/pkgs/development/python-modules/nunavut/default.nix index 5b974c9b6af..4cfce289917 100644 --- a/pkgs/development/python-modules/nunavut/default.nix +++ b/pkgs/development/python-modules/nunavut/default.nix @@ -2,22 +2,24 @@ , buildPythonPackage , pythonOlder , fetchPypi +, importlib-resources , pydsdl , pyyaml }: buildPythonPackage rec { pname = "nunavut"; - version = "1.7.3"; + version = "1.7.5"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Tj3zCKDM4IBH9BKonhW9gPFD+lE3Q570Lxfm6b/d5JU="; + sha256 = "sha256-4wZfj2C6aUNqHaA00KiiXbKOMf/XBSD0N2+9c++e0K8="; }; propagatedBuildInputs = [ + importlib-resources pydsdl pyyaml ]; diff --git a/pkgs/development/python-modules/oci/default.nix b/pkgs/development/python-modules/oci/default.nix index 8fd06ae3b40..879a317469e 100644 --- a/pkgs/development/python-modules/oci/default.nix +++ b/pkgs/development/python-modules/oci/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "oci"; - version = "2.60.0"; + version = "2.63.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "oracle"; repo = "oci-python-sdk"; rev = "v${version}"; - hash = "sha256-fXeea4MftVSJWzanHeAuERRiQLBp8l1l1Cw2lG3uz24="; + hash = "sha256-EIn7BRXsVf7R2ij8iK3hrNWnLehxKDBlk96lAhFh0xw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index 5d135a4731f..72565e55419 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "ocrmypdf"; - version = "13.4.2"; + version = "13.4.3"; src = fetchFromGitHub { owner = "jbarlow83"; @@ -39,7 +39,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - sha256 = "sha256-P829Tv2848iMEFzweydGSkFEnkfX8Rvyqd6Yqu+2VXY="; + hash = "sha256-kriT3NV9Lj44WjOeK6+pILjfRMt9QMcKU57si394xxI="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/ondilo/default.nix b/pkgs/development/python-modules/ondilo/default.nix index 271243ab791..c766e2cb158 100644 --- a/pkgs/development/python-modules/ondilo/default.nix +++ b/pkgs/development/python-modules/ondilo/default.nix @@ -4,30 +4,35 @@ , oauthlib , pythonOlder , requests -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { pname = "ondilo"; version = "0.3.0"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "JeromeHXP"; repo = pname; rev = version; - sha256 = "sha256-MI6K+41I/IVi+GRBdmRIHbljULDFLAwpo3W8tdxCOBM="; + hash = "sha256-MI6K+41I/IVi+GRBdmRIHbljULDFLAwpo3W8tdxCOBM="; }; propagatedBuildInputs = [ oauthlib requests - requests_oauthlib + requests-oauthlib ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "ondilo" ]; + + pythonImportsCheck = [ + "ondilo" + ]; meta = with lib; { description = "Python package to access Ondilo ICO APIs"; diff --git a/pkgs/development/python-modules/opentracing/default.nix b/pkgs/development/python-modules/opentracing/default.nix index 381b0d76b14..bf7ec6a938f 100644 --- a/pkgs/development/python-modules/opentracing/default.nix +++ b/pkgs/development/python-modules/opentracing/default.nix @@ -5,12 +5,15 @@ , futures ? null , gevent , mock -, pytest -, tornado }: +, pytestCheckHook +, tornado +, six +}: buildPythonPackage rec { pname = "opentracing"; version = "2.4.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; @@ -19,11 +22,13 @@ buildPythonPackage rec { propagatedBuildInputs = lib.optional isPy27 futures; - checkInputs = [ gevent mock pytest tornado ]; - - checkPhase = '' - pytest - ''; + checkInputs = [ + gevent + mock + pytestCheckHook + six + tornado + ]; meta = with lib; { homepage = "https://github.com/opentracing/opentracing-python"; diff --git a/pkgs/development/python-modules/optax/default.nix b/pkgs/development/python-modules/optax/default.nix index f3790a3f59f..b0f896a18eb 100644 --- a/pkgs/development/python-modules/optax/default.nix +++ b/pkgs/development/python-modules/optax/default.nix @@ -38,7 +38,6 @@ buildPythonPackage rec { tensorflow tensorflow-datasets ]; - pytestFlagsArray = [ "-n $NIX_BUILD_CORES" ]; pythonImportsCheck = [ "optax" diff --git a/pkgs/development/python-modules/ormar/default.nix b/pkgs/development/python-modules/ormar/default.nix index 5546f58b262..8678e512fdf 100644 --- a/pkgs/development/python-modules/ormar/default.nix +++ b/pkgs/development/python-modules/ormar/default.nix @@ -70,8 +70,8 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace 'SQLAlchemy = ">=1.3.18,<=1.4.29"' 'SQLAlchemy = ">=1.3.18"' \ - --replace 'databases = ">=0.3.2,!=0.5.0,!=0.5.1,!=0.5.2,!=0.5.3,<0.5.5"' 'databases = ">=0.5.5"' + --replace 'SQLAlchemy = ">=1.3.18,<=1.4.31"' 'SQLAlchemy = ">=1.3.18"' \ + --replace 'databases = ">=0.3.2,!=0.5.0,!=0.5.1,!=0.5.2,!=0.5.3,<=0.5.5"' 'databases = ">=0.5.5"' ''; disabledTests = [ @@ -84,8 +84,8 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/collerek/ormar"; description = "Async ORM with fastapi in mind and pydantic validation"; + homepage = "https://github.com/collerek/ormar"; license = licenses.mit; maintainers = with maintainers; [ andreasfelix ]; }; diff --git a/pkgs/development/python-modules/ovh/default.nix b/pkgs/development/python-modules/ovh/default.nix index 305b03b4d14..b9ab287260d 100644 --- a/pkgs/development/python-modules/ovh/default.nix +++ b/pkgs/development/python-modules/ovh/default.nix @@ -1,20 +1,45 @@ { lib , buildPythonPackage , fetchPypi +, mock +, nose +, requests +, yanc }: buildPythonPackage rec { pname = "ovh"; - version = "0.5.0"; - - # Needs yanc - doCheck = false; + version = "1.0.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "f74d190c4bff0953d76124cb8ed319a8a999138720e42957f0db481ef4746ae8"; + sha256 = "sha256-IQzwu0gwfPNPOLQLCO99KL5Hu2094Y+acQBFXVGzHhU="; }; + propagatedBuildInputs = [ + requests + ]; + + preCheck = '' + export HOME=$(mktemp -d) + ''; + + checkInputs = [ + mock + nose + yanc + ]; + + # requires network + checkPhase = '' + nosetests . \ + -e test_config_get_conf \ + -e test_config_get_custom_conf \ + -e test_endpoints \ + -e test_init_from_custom_config + ''; + meta = { description = "Thin wrapper around OVH's APIs"; homepage = "https://github.com/ovh/python-ovh"; diff --git a/pkgs/development/python-modules/packaging/default.nix b/pkgs/development/python-modules/packaging/default.nix index 648a548e521..69457e2a556 100644 --- a/pkgs/development/python-modules/packaging/default.nix +++ b/pkgs/development/python-modules/packaging/default.nix @@ -2,40 +2,44 @@ , buildPythonPackage , fetchPypi , pyparsing -, six , pytestCheckHook , pretend , setuptools }: -buildPythonPackage rec { - pname = "packaging"; - version = "21.3"; - format = "pyproject"; +let + packaging = buildPythonPackage rec { + pname = "packaging"; + version = "21.3"; + format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-3UfEKSfYmrkR5gZRiQfMLTofOLvQJjhZcGQ/nFuOz+s="; - }; + src = fetchPypi { + inherit pname version; + sha256 = "sha256-3UfEKSfYmrkR5gZRiQfMLTofOLvQJjhZcGQ/nFuOz+s="; + }; + + nativeBuildInputs = [ + setuptools + ]; - nativeBuildInputs = [ - setuptools - ]; + propagatedBuildInputs = [ pyparsing ]; - propagatedBuildInputs = [ pyparsing six ]; + checkInputs = [ + pytestCheckHook + pretend + ]; - checkInputs = [ - pytestCheckHook - pretend - ]; + # Prevent circular dependency + doCheck = false; - # Prevent circular dependency - doCheck = false; + passthru.tests = packaging.overridePythonAttrs (_: { doCheck = true; }); - meta = with lib; { - description = "Core utilities for Python packages"; - homepage = "https://github.com/pypa/packaging"; - license = [ licenses.bsd2 licenses.asl20 ]; - maintainers = with maintainers; [ bennofs ]; + meta = with lib; { + description = "Core utilities for Python packages"; + homepage = "https://github.com/pypa/packaging"; + license = with licenses; [ bsd2 asl20 ]; + maintainers = with maintainers; [ bennofs ]; + }; }; -} +in +packaging diff --git a/pkgs/development/python-modules/paho-mqtt/default.nix b/pkgs/development/python-modules/paho-mqtt/default.nix index 341ef832183..fb249acf633 100644 --- a/pkgs/development/python-modules/paho-mqtt/default.nix +++ b/pkgs/development/python-modules/paho-mqtt/default.nix @@ -5,6 +5,7 @@ , isPy3k , pytestCheckHook , mock +, six }: buildPythonPackage rec { @@ -18,16 +19,9 @@ buildPythonPackage rec { sha256 = "sha256-9nH6xROVpmI+iTKXfwv2Ar1PAmWbEunI3HO0pZyK6Rg="; }; - postPatch = '' - substituteInPlace setup.py \ - --replace "pylama" "" \ - --replace "'pytest-runner'" "" - substituteInPlace setup.cfg \ - --replace "--pylama" "" - ''; - checkInputs = [ pytestCheckHook + six ] ++ lib.optional (!isPy3k) [ mock ]; diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 90309ef0b40..70919715eef 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -27,12 +27,12 @@ buildPythonPackage rec { pname = "pandas"; - version = "1.4.1"; + version = "1.4.2"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-jbk+yYrHy1+KwUIMEPXjxDUzFT8lP+f7bYkc9aorgNI="; + sha256 = "sha256-krwfxYXxRjyoJ7RVNZV4FbfeshjFSbfBhALDIsdUmhI="; }; nativeBuildInputs = [ cython ]; @@ -71,10 +71,16 @@ buildPythonPackage rec { doCheck = !stdenv.isAarch32 && !stdenv.isAarch64; # upstream doesn't test this architecture + # don't max out build cores, it breaks tests + dontUsePytestXdist = true; + pytestFlagsArray = [ + # https://github.com/pandas-dev/pandas/blob/main/test_fast.sh + "--skip-db" "--skip-slow" "--skip-network" - "--numprocesses" "0" + "-m" "'not single_cpu'" + "--numprocesses" "4" ]; disabledTests = [ diff --git a/pkgs/development/python-modules/panel/default.nix b/pkgs/development/python-modules/panel/default.nix index 48247112d95..dca9b44c817 100644 --- a/pkgs/development/python-modules/panel/default.nix +++ b/pkgs/development/python-modules/panel/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "panel"; - version = "0.12.7"; + version = "0.13.0"; format = "wheel"; @@ -23,7 +23,7 @@ buildPythonPackage rec { # tries to fetch even more artifacts src = fetchPypi { inherit pname version format; - hash = "sha256-VcoMGYT48WduyuyTB/4KJybT/pBKV0hB1pSpZGagAeA="; + hash = "sha256-Iv1Lb45n2XUHSluZzdF2Bf/hXZmgs++9/av26rHgePc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/parsimonious/default.nix b/pkgs/development/python-modules/parsimonious/default.nix index 557e632f2ed..ccffbc5a281 100644 --- a/pkgs/development/python-modules/parsimonious/default.nix +++ b/pkgs/development/python-modules/parsimonious/default.nix @@ -1,24 +1,33 @@ { lib , buildPythonPackage , fetchPypi -, nose -, six +, regex +, pytestCheckHook }: buildPythonPackage rec { - version = "0.8.1"; pname = "parsimonious"; + version = "0.9.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "3add338892d580e0cb3b1a39e4a1b427ff9f687858fdd61097053742391a9f6b"; + sha256 = "sha256-sq0a5jovZb149eCorFEKmPNgekPx2yqNRmNqXZ5KMME="; }; - checkInputs = [ nose ]; - propagatedBuildInputs = [ six ]; + propagatedBuildInputs = [ + regex + ]; - # performance tests tend to fail sometimes - NOSE_EXCLUDE = "test_benchmarks"; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "parsimonious" + "parsimonious.grammar" + "parsimonious.nodes" + ]; meta = with lib; { homepage = "https://github.com/erikrose/parsimonious"; diff --git a/pkgs/development/python-modules/path.py/default.nix b/pkgs/development/python-modules/path.py/default.nix deleted file mode 100644 index e49b1ceb462..00000000000 --- a/pkgs/development/python-modules/path.py/default.nix +++ /dev/null @@ -1,50 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, setuptools-scm -, pytestCheckHook -, pytest-flake8 -, glibcLocales -, packaging -, isPy38 -, importlib-metadata -, fetchpatch -}: - -buildPythonPackage rec { - pname = "path.py"; - version = "12.0.1"; - - src = fetchPypi { - inherit pname version; - sha256 = "9f2169633403aa0423f6ec000e8701dd1819526c62465f5043952f92527fea0f"; - }; - - checkInputs = [ pytestCheckHook pytest-flake8 glibcLocales packaging ]; - buildInputs = [ setuptools-scm ]; - propagatedBuildInputs = [ - importlib-metadata - ]; - - LC_ALL = "en_US.UTF-8"; - - meta = { - description = "A module wrapper for os.path"; - homepage = "https://github.com/jaraco/path.py"; - license = lib.licenses.mit; - }; - - # ignore performance test which may fail when the system is under load - # test_version fails with 3.8 https://github.com/jaraco/path.py/issues/172 - disabledTests = [ "TestPerformance" ] ++ lib.optionals isPy38 [ "test_version"]; - - dontUseSetuptoolsCheck = true; - - patches = [ - (fetchpatch { - url = "https://github.com/jaraco/path.py/commit/02eb16f0eb2cdc0015972ce963357aaa1cd0b84b.patch"; - sha256 = "0bqa8vjwil7jn35a6984adcm24pvv3pjkhszv10qv6yr442d1mk9"; - }) - ]; - -} diff --git a/pkgs/development/python-modules/path/default.nix b/pkgs/development/python-modules/path/default.nix new file mode 100644 index 00000000000..a22aa64e8b1 --- /dev/null +++ b/pkgs/development/python-modules/path/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi + +# build time +, setuptools-scm + +# tests +, pytestCheckHook +, appdirs +, packaging +}: + +buildPythonPackage rec { + pname = "path"; + version = "16.4.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-uvLnV8Sxm+ggj55n5I+0dbSld9VhNZDORmk7298IL1I="; + }; + + nativeBuildInputs = [ + setuptools-scm + ]; + + checkInputs = [ + pytestCheckHook + ]; + + disabledTests = [ + # creates a file, checks when it was last accessed/modified + # AssertionError: assert 1650036414.0 == 1650036414.960688 + "test_utime" + ]; + + pythonImportsCheck = [ + "path" + ]; + + meta = with lib; { + description = "Object-oriented file system path manipulation"; + homepage = "https://github.com/jaraco/path"; + license = licenses.mit; + maintainers = with maintainers; [ ]; + }; +} diff --git a/pkgs/development/python-modules/pdm-pep517/default.nix b/pkgs/development/python-modules/pdm-pep517/default.nix index 5649e092634..f91df4f6e5e 100644 --- a/pkgs/development/python-modules/pdm-pep517/default.nix +++ b/pkgs/development/python-modules/pdm-pep517/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "pdm-pep517"; - version = "0.11.2"; + version = "0.12.3"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-4AC6tDUCwZHXGAiiYw3UTs4wGjGdJuACocrqOnMHzSA="; + sha256 = "sha256-EXv7Fhm4a+s0/gCbjUGsrPeQ0fxSQMzBH2ytoVHUaIc="; }; preCheck = '' diff --git a/pkgs/development/python-modules/pep257/default.nix b/pkgs/development/python-modules/pep257/default.nix deleted file mode 100644 index d6205fc6e72..00000000000 --- a/pkgs/development/python-modules/pep257/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook, mock }: - -buildPythonPackage rec { - pname = "pep257"; - version = "6.1.1"; - - src = fetchFromGitHub { - owner = "GreenSteam"; - repo = "pep257"; - rev = version; - sha256 = "0hcf3nyvzl8kd6gmc9qsiigz7vpwrjxcd1bd50dd63cad87qqicg"; - }; - - checkInputs = [ pytestCheckHook mock ]; - - meta = with lib; { - homepage = "https://github.com/GreenSteam/pep257/"; - description = "Python docstring style checker"; - longDescription = "Static analysis tool for checking compliance with Python PEP 257."; - license = licenses.mit; - maintainers = with maintainers; [ ]; - }; -} diff --git a/pkgs/development/python-modules/pex/default.nix b/pkgs/development/python-modules/pex/default.nix index ec077edfeb6..f6b6162634f 100644 --- a/pkgs/development/python-modules/pex/default.nix +++ b/pkgs/development/python-modules/pex/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pex"; - version = "2.1.79"; + version = "2.1.81"; format = "flit"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-XIqof/RZL1dmfPU6NVtkf18zrkG5RPOesGfsDDrPhQ8="; + hash = "sha256-EW7kOUTzLjmBVKcdRrcdx+AAMSp1hw2LJ/mHMuKViLE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pg8000/default.nix b/pkgs/development/python-modules/pg8000/default.nix index 29ab17c8ba8..f22df192148 100644 --- a/pkgs/development/python-modules/pg8000/default.nix +++ b/pkgs/development/python-modules/pg8000/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pg8000"; - version = "1.24.2"; + version = "1.26.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-q3/ASKVvysTZwkeyKoNW5gjdmgPUg18ch/ui5PJihKU="; + sha256 = "sha256-niXqE6W3/Mg7AmBR18bk3NUiHpUOvlOT3nFaP+oVJ9M="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/phik/default.nix b/pkgs/development/python-modules/phik/default.nix index a7cb6e7e838..2919fb5c733 100644 --- a/pkgs/development/python-modules/phik/default.nix +++ b/pkgs/development/python-modules/phik/default.nix @@ -19,12 +19,12 @@ buildPythonPackage rec { pname = "phik"; - version = "0.12.0"; + version = "0.12.2"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "959fd40482246e3f643cdac5ea04135b2c11a487e917af7d4e75843f47183549"; + sha256 = "sha256-sGdOuCnSMpBDP3GNI2ASK+gEsXDMyAetnZqNHBOYVTM="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/phonemizer/default.nix b/pkgs/development/python-modules/phonemizer/default.nix index 29f7266b691..88bb69e9952 100644 --- a/pkgs/development/python-modules/phonemizer/default.nix +++ b/pkgs/development/python-modules/phonemizer/default.nix @@ -12,11 +12,11 @@ buildPythonApplication rec { pname = "phonemizer"; - version = "3.0.1"; + version = "3.1.1"; src = fetchPypi { inherit pname version; - sha256 = "1b4ea53b8da9a156361dff1d0c04ac1a8e65e6966d1cb9a8147c200960b32296"; + sha256 = "sha256-PWVK0NLVa0Rx1xyUyQF2/RvUo3/geskn53FcEv0Jr0c="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pickleshare/default.nix b/pkgs/development/python-modules/pickleshare/default.nix index 34798cc3ee5..381f03bdce5 100644 --- a/pkgs/development/python-modules/pickleshare/default.nix +++ b/pkgs/development/python-modules/pickleshare/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, pathpy +, path , pathlib2 , pythonOlder }: @@ -15,7 +15,7 @@ buildPythonPackage rec { sha256 = "87683d47965c1da65cdacaf31c8441d12b8044cdec9aca500cd78fc2c683afca"; }; - propagatedBuildInputs = [ pathpy ] + propagatedBuildInputs = [ path ] ++ lib.optional (pythonOlder "3.4") pathlib2; # No proper test suite diff --git a/pkgs/development/python-modules/pikepdf/default.nix b/pkgs/development/python-modules/pikepdf/default.nix index bb8c2c385c2..d0671f93513 100644 --- a/pkgs/development/python-modules/pikepdf/default.nix +++ b/pkgs/development/python-modules/pikepdf/default.nix @@ -81,6 +81,10 @@ buildPythonPackage rec { setuptools ]; + disabledTests = [ + "test_image_palette" # https://github.com/pikepdf/pikepdf/issues/328 + ]; + pythonImportsCheck = [ "pikepdf" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/pillow/default.nix b/pkgs/development/python-modules/pillow/default.nix index 8aa1ad1f4c4..47ed191c6d9 100644 --- a/pkgs/development/python-modules/pillow/default.nix +++ b/pkgs/development/python-modules/pillow/default.nix @@ -1,4 +1,9 @@ -{ lib, stdenv, buildPythonPackage, fetchPypi, isPyPy, isPy3k +{ lib +, stdenv +, buildPythonPackage +, pythonOlder +, fetchPypi +, isPyPy , defusedxml, olefile, freetype, libjpeg, zlib, libtiff, libwebp, tcl, lcms2, tk, libX11 , libxcb, openjpeg, libimagequant, pyroma, numpy, pytestCheckHook # for passthru.tests @@ -6,14 +11,15 @@ }@args: import ./generic.nix (rec { - pname = "Pillow"; - version = "9.0.1"; + pname = "pillow"; + version = "9.1.0"; - disabled = !isPy3k; + disabled = pythonOlder "3.7"; src = fetchPypi { - inherit pname version; - sha256 = "bIvII4p9/a96dfXsWmY/QXP4w2flo5+H5yBJXh7tdfo="; + pname = "Pillow"; + inherit version; + sha256 = "f401ed2bbb155e1ade150ccc63db1a4f6c1909d3d378f7d1235a44e90d75fb97"; }; passthru.tests = { diff --git a/pkgs/development/python-modules/pip/default.nix b/pkgs/development/python-modules/pip/default.nix index a4370fbaae5..239c91fb88a 100644 --- a/pkgs/development/python-modules/pip/default.nix +++ b/pkgs/development/python-modules/pip/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "pip"; - version = "22.0.3"; + version = "22.0.4"; format = "other"; src = fetchFromGitHub { owner = "pypa"; repo = pname; rev = version; - sha256 = "sha256-Wu2QQfb0pehPLLa+za32C4jH1arkBKKc3jlAMRkDV5Q="; + sha256 = "sha256-gtDaopeFVpVFXpBtHDzBuZuXUrJciSSIppYXBx1anu4="; name = "${pname}-${version}-source"; }; diff --git a/pkgs/development/python-modules/plaid-python/default.nix b/pkgs/development/python-modules/plaid-python/default.nix index ac635fe4db5..efcdf3fd3a3 100644 --- a/pkgs/development/python-modules/plaid-python/default.nix +++ b/pkgs/development/python-modules/plaid-python/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "plaid-python"; - version = "9.2.0"; + version = "9.3.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-3yFfANMkn8CXCheNHU77WGeYxPV4gs2jvOl/rV+/6vY="; + hash = "sha256-7H6fpJl192L8MEWrQW89Fa/BTZ2GZXjDRcy0yc17hDI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pleroma-bot/default.nix b/pkgs/development/python-modules/pleroma-bot/default.nix index 1dca45eca76..ed586a4474b 100644 --- a/pkgs/development/python-modules/pleroma-bot/default.nix +++ b/pkgs/development/python-modules/pleroma-bot/default.nix @@ -4,30 +4,45 @@ , pytestCheckHook , requests-mock , oauthlib -, requests_oauthlib +, requests-oauthlib , requests , pyaml +, pythonOlder }: buildPythonPackage rec { pname = "pleroma-bot"; version = "0.8.6"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "robertoszek"; - repo = "pleroma-bot"; + repo = pname; rev = version; - sha256 = "1q0xhgqq41zbqiawpd4kbdx41zhwxxp5ipn1c2rc8d7pjyb5p75w"; + hash = "sha256-vJxblpf3NMSyYMHeWG7vHP5AeluTtMtVxOsHgvGDHeA="; }; - propagatedBuildInputs = [ pyaml requests requests_oauthlib oauthlib ]; - checkInputs = [ pytestCheckHook requests-mock ]; + propagatedBuildInputs = [ + pyaml + requests + requests-oauthlib + oauthlib + ]; + + checkInputs = [ + pytestCheckHook + requests-mock + ]; - pythonImportsCheck = [ "pleroma_bot" ]; + pythonImportsCheck = [ + "pleroma_bot" + ]; meta = with lib; { - homepage = "https://robertoszek.github.io/pleroma-bot/"; description = "Bot for mirroring one or multiple Twitter accounts in Pleroma/Mastodon"; + homepage = "https://robertoszek.github.io/pleroma-bot/"; license = licenses.mit; maintainers = with maintainers; [ robertoszek ]; }; diff --git a/pkgs/development/python-modules/policyuniverse/default.nix b/pkgs/development/python-modules/policyuniverse/default.nix index 79459070b31..77b38f7a318 100644 --- a/pkgs/development/python-modules/policyuniverse/default.nix +++ b/pkgs/development/python-modules/policyuniverse/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "policyuniverse"; - version = "1.5.0.20220414"; + version = "1.5.0.20220416"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-BtNxU5NdOJfJejN4RpsUJJytWkQxJxbNjnY8hLPb3q0="; + sha256 = "sha256-RGXOqhXPsEQR5wcXDWz00J6KcdJOY5ZXSLVXT18wDDk="; }; # Tests are not shipped and there are no GitHub tags diff --git a/pkgs/development/python-modules/prettytable/default.nix b/pkgs/development/python-modules/prettytable/default.nix index 25d22c2c5a2..7c4afe4a728 100644 --- a/pkgs/development/python-modules/prettytable/default.nix +++ b/pkgs/development/python-modules/prettytable/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "prettytable"; - version = "3.1.1"; + version = "3.2.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Q8niMnLKJT0Diudv463eiXlOkuf8qy3fW5SzhkLvTyE="; + sha256 = "sha256-rn2WxkEAVD3GFmK0CijzsDwPlKUD7RIcb8ongsWBb4E="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/prompt-toolkit/default.nix b/pkgs/development/python-modules/prompt-toolkit/default.nix index 4ec9e381daf..be90726e189 100644 --- a/pkgs/development/python-modules/prompt-toolkit/default.nix +++ b/pkgs/development/python-modules/prompt-toolkit/default.nix @@ -3,6 +3,7 @@ , fetchPypi , pytestCheckHook , pythonOlder +, six , wcwidth }: @@ -20,6 +21,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ + six wcwidth ]; diff --git a/pkgs/development/python-modules/psautohint/default.nix b/pkgs/development/python-modules/psautohint/default.nix index 3004d5f7a9b..b9fb5f3aa14 100644 --- a/pkgs/development/python-modules/psautohint/default.nix +++ b/pkgs/development/python-modules/psautohint/default.nix @@ -3,19 +3,20 @@ , lxml, fs # for fonttools extras , setuptools-scm , pytestCheckHook, pytest-cov, pytest-xdist +, runAllTests ? false, psautohint # for passthru.tests }: buildPythonPackage rec { pname = "psautohint"; - version = "2.3.1"; + version = "2.4.0"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "adobe-type-tools"; repo = pname; rev = "v${version}"; - sha256 = "1knh428af0lvzijvd72i30jcvx9n6ga0hai69kxg8386jdpmmvkg"; + sha256 = "125nx7accvbk626qlfar90va1995kp9qfrz6a978q4kv2kk37xai"; fetchSubmodules = true; # data dir for tests }; @@ -34,10 +35,7 @@ buildPythonPackage rec { pytest-cov pytest-xdist ]; - disabledTests = [ - # Test that fails on pytest >= v6 - # https://github.com/adobe-type-tools/psautohint/issues/284#issuecomment-742800965 - "test_hashmap_old_version" + disabledTests = lib.optionals (!runAllTests) [ # Slow tests, reduces test time from ~5 mins to ~30s "test_mmufo" "test_flex_ufo" @@ -48,6 +46,10 @@ buildPythonPackage rec { "test_otf" ]; + passthru.tests = { + fullTestsuite = psautohint.override { runAllTests = true; }; + }; + meta = with lib; { description = "Script to normalize the XML and other data inside of a UFO"; homepage = "https://github.com/adobe-type-tools/psautohint"; diff --git a/pkgs/development/python-modules/purl/default.nix b/pkgs/development/python-modules/purl/default.nix index aa85ea3965a..8c7b208df2f 100644 --- a/pkgs/development/python-modules/purl/default.nix +++ b/pkgs/development/python-modules/purl/default.nix @@ -1,4 +1,7 @@ -{ lib, buildPythonPackage, fetchFromGitHub +{ lib +, buildPythonPackage +, fetchFromGitHub +, six , pytestCheckHook }: @@ -13,7 +16,17 @@ buildPythonPackage rec { sha256 = "sha256-Jb3JRW/PtQ7NlO4eQ9DmTPu/sjvFTg2mztphoIF79gc="; }; - checkInputs = [ pytestCheckHook]; + propagatedBuildInputs = [ + six + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "purl" + ]; meta = with lib; { description = "Immutable URL class for easy URL-building and manipulation"; diff --git a/pkgs/development/python-modules/py-radix/default.nix b/pkgs/development/python-modules/py-radix/default.nix index 18fff5ec97f..f4b064d41aa 100644 --- a/pkgs/development/python-modules/py-radix/default.nix +++ b/pkgs/development/python-modules/py-radix/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, pythonAtLeast , fetchFromGitHub , coverage , nose @@ -9,6 +10,8 @@ buildPythonPackage rec { pname = "py-radix"; version = "0.10.0"; + disabled = pythonAtLeast "3.10"; # abandoned, remove when we move to py310/py311 + src = fetchFromGitHub { owner = "mjschultz"; repo = "py-radix"; diff --git a/pkgs/development/python-modules/py4j/default.nix b/pkgs/development/python-modules/py4j/default.nix index cf24d21e17f..cdf8a3c49c3 100644 --- a/pkgs/development/python-modules/py4j/default.nix +++ b/pkgs/development/python-modules/py4j/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "py4j"; - version = "0.10.9.3"; + version = "0.10.9.5"; src = fetchPypi { inherit pname version; - sha256 = "0d92844da4cb747155b9563c44fc322c9a1562b3ef0979ae692dbde732d784dd"; + sha256 = "sha256-J2pKPFohVN8YYO8zA6knRg4C6XsEfcCkfBw/uMzjTbY="; }; # No tests in archive diff --git a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix index 391afabf931..508e6f71d11 100644 --- a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix +++ b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix @@ -1,20 +1,36 @@ -{ lib, buildPythonPackage, fetchPypi, aiohttp, requests }: +{ lib +, buildPythonPackage +, fetchPypi +, aiohttp +, requests +, pythonOlder +}: buildPythonPackage rec { pname = "pyTelegramBotAPI"; - version = "4.4.0"; + version = "4.4.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-5vIjVqvr/+Cok9z3L+CaDIve2tb0mMVaMMPdMs5Ijmo="; + hash = "sha256-3Qppp/UDKiGChnvMOgW8EKygI75gYzv37c0ctExmK+g="; }; - propagatedBuildInputs = [ aiohttp requests ]; + propagatedBuildInputs = [ + aiohttp + requests + ]; + + pythonImportsCheck = [ + "telebot" + ]; meta = with lib; { homepage = "https://github.com/eternnoir/pyTelegramBotAPI"; description = "A simple, but extensible Python implementation for the Telegram Bot API"; - license = licenses.gpl2; + license = licenses.gpl2Only; maintainers = with maintainers; [ das_j ]; }; } diff --git a/pkgs/development/python-modules/pyasn1/default.nix b/pkgs/development/python-modules/pyasn1/default.nix index a0037d64683..a3dbc7396b0 100644 --- a/pkgs/development/python-modules/pyasn1/default.nix +++ b/pkgs/development/python-modules/pyasn1/default.nix @@ -9,10 +9,12 @@ buildPythonPackage rec { sha256 = "aef77c9fb94a3ac588e87841208bdec464471d9871bd5050a287cc9a475cd0ba"; }; + pythonImportsCheck = [ "pyasn1" ]; + meta = with lib; { - description = "ASN.1 tools for Python"; - homepage = "http://pyasn1.sourceforge.net/"; - license = "mBSD"; - platforms = platforms.unix; # arbitrary choice + description = "Generic ASN.1 library for Python"; + homepage = "https://github.com/etingof/pyasn1"; + license = licenses.bsd2; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/pyatmo/default.nix b/pkgs/development/python-modules/pyatmo/default.nix index 5cd314b6cb9..9d75c2b01d8 100644 --- a/pkgs/development/python-modules/pyatmo/default.nix +++ b/pkgs/development/python-modules/pyatmo/default.nix @@ -9,7 +9,7 @@ , pytestCheckHook , pythonOlder , requests -, requests_oauthlib +, requests-oauthlib , requests-mock , setuptools-scm }: @@ -38,7 +38,7 @@ buildPythonPackage rec { aiohttp oauthlib requests - requests_oauthlib + requests-oauthlib ]; checkInputs = [ diff --git a/pkgs/development/python-modules/pybids/default.nix b/pkgs/development/python-modules/pybids/default.nix index 3ad29916575..4640be0c436 100644 --- a/pkgs/development/python-modules/pybids/default.nix +++ b/pkgs/development/python-modules/pybids/default.nix @@ -14,12 +14,12 @@ }: buildPythonPackage rec { - version = "0.14.0"; + version = "0.15.0"; pname = "pybids"; src = fetchPypi { inherit pname version; - sha256 = "73c4d03aad333f2a7cb4405abe96f55a33cffa4b5a2d23fad6ac5767c45562ef"; + sha256 = "sha256-Eq+4x7h1uR5QHXfgCEZl+7usc9CBFQClvV36Yyrqbd0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pybotvac/default.nix b/pkgs/development/python-modules/pybotvac/default.nix index dff1374087a..2feee74d319 100644 --- a/pkgs/development/python-modules/pybotvac/default.nix +++ b/pkgs/development/python-modules/pybotvac/default.nix @@ -2,29 +2,35 @@ , buildPythonPackage , fetchPypi , requests -, requests_oauthlib +, requests-oauthlib , voluptuous +, pythonOlder }: buildPythonPackage rec { pname = "pybotvac"; version = "0.0.23"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "54b4fe565c10000c54d5644d081e2de1f850daefbac39cea74cea649b47bfb12"; + hash = "sha256-VLT+VlwQAAxU1WRNCB4t4fhQ2u+6w5zqdM6mSbR7+xI="; }; propagatedBuildInputs = [ requests - requests_oauthlib + requests-oauthlib voluptuous ]; # no tests doCheck = false; - pythonImportsCheck = [ "pybotvac" ]; + pythonImportsCheck = [ + "pybotvac" + ]; meta = with lib; { description = "Python module for interacting with Neato Botvac Connected vacuum robots"; diff --git a/pkgs/development/python-modules/pycfmodel/default.nix b/pkgs/development/python-modules/pycfmodel/default.nix index 2dca6e47654..9aa41214bfc 100644 --- a/pkgs/development/python-modules/pycfmodel/default.nix +++ b/pkgs/development/python-modules/pycfmodel/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pycfmodel"; - version = "0.19.0"; + version = "0.19.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Skyscanner"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-u1XuUW5OFl5NDP11nd6HK17NBXjqvzLFp2jUmecWP8E="; + hash = "sha256-k059AfI3dTPMLAOColmTG4kz0z2bLO1oi8Bg0QeLork="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pycountry/default.nix b/pkgs/development/python-modules/pycountry/default.nix index 560c5a70812..3583826f69a 100644 --- a/pkgs/development/python-modules/pycountry/default.nix +++ b/pkgs/development/python-modules/pycountry/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "pycountry"; - version = "22.1.10"; + version = "22.3.5"; src = fetchPypi { inherit pname version; - sha256 = "b9a6d9cdbf53f81ccdf73f6f5de01b0d8493cab2213a230af3e34458de85ea32"; + sha256 = "sha256-shY6JGxYWJTYCPGHg+GRN8twoMGPs2dI3AH8bxCcFkY="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/pycurl/default.nix b/pkgs/development/python-modules/pycurl/default.nix index 9d3319001d3..e7f3b87ad0c 100644 --- a/pkgs/development/python-modules/pycurl/default.nix +++ b/pkgs/development/python-modules/pycurl/default.nix @@ -50,16 +50,6 @@ buildPythonPackage rec { ''; disabledTests = [ - # libcurl stopped passing the reason phrase from the HTTP status line - # https://github.com/pycurl/pycurl/issues/679 - "test_failonerror" - "test_failonerror_status_line_invalid_utf8_python3" - # bottle>=0.12.17 escapes utf8 properly, so these test don't work anymore - # https://github.com/pycurl/pycurl/issues/669 - "test_getinfo_content_type_invalid_utf8_python3" - "test_getinfo_cookie_invalid_utf8_python3" - "test_getinfo_raw_content_type_invalid_utf8" - "test_getinfo_raw_cookie_invalid_utf8" # tests that require network access "test_keyfunction" "test_keyfunction_bogus_return" diff --git a/pkgs/development/python-modules/pyee/default.nix b/pkgs/development/python-modules/pyee/default.nix index e47e0366c86..7a967c48a04 100644 --- a/pkgs/development/python-modules/pyee/default.nix +++ b/pkgs/development/python-modules/pyee/default.nix @@ -1,30 +1,36 @@ { lib , buildPythonPackage , fetchPypi -, vcversioner , mock -, pytestCheckHook , pytest-asyncio , pytest-trio -, twisted +, pytestCheckHook , pythonOlder +, twisted +, typing-extensions +, vcversioner }: buildPythonPackage rec { pname = "pyee"; version = "9.0.4"; + format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-J3DEkoq8ch9GtwXmpysMWUgMSmnJqDygsAu5lPHqSzI="; + hash = "sha256-J3DEkoq8ch9GtwXmpysMWUgMSmnJqDygsAu5lPHqSzI="; }; buildInputs = [ vcversioner ]; + propagatedBuildInputs = [ + typing-extensions + ]; + checkInputs = [ mock pytest-asyncio @@ -33,7 +39,9 @@ buildPythonPackage rec { twisted ]; - pythonImportsCheck = [ "pyee" ]; + pythonImportsCheck = [ + "pyee" + ]; meta = with lib; { description = "A port of Node.js's EventEmitter to Python"; diff --git a/pkgs/development/python-modules/pyfaidx/default.nix b/pkgs/development/python-modules/pyfaidx/default.nix index e356ca563b5..20b3e99eeb4 100644 --- a/pkgs/development/python-modules/pyfaidx/default.nix +++ b/pkgs/development/python-modules/pyfaidx/default.nix @@ -5,6 +5,7 @@ , numpy , setuptools-scm , six +, glibcLocales , pytestCheckHook }: @@ -27,16 +28,15 @@ buildPythonPackage rec { ]; checkInputs = [ + glibcLocales nose numpy pytestCheckHook ]; - disabledTests = [ - # PyPI releases don't ship all the needed files for the tests - "test_index_zero_length" - "test_fetch_zero_length" - "test_read_back_index" + disabledTestPaths = [ + # FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz' + "tests/test_Fasta_bgzip.py" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pyfakefs/default.nix b/pkgs/development/python-modules/pyfakefs/default.nix index 63bf4483911..c3c6513f331 100644 --- a/pkgs/development/python-modules/pyfakefs/default.nix +++ b/pkgs/development/python-modules/pyfakefs/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "4.5.5"; + version = "4.5.6"; pname = "pyfakefs"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-iIIe2MJjJxu2alRBmoJZGqEH+yz9pC3I8hWOC+CIWQc="; + sha256 = "sha256-kU17+ZRAbPvv7gtNRZGPYMFbQGr+k/gZSoBNpaRQqCI="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pygit2/default.nix b/pkgs/development/python-modules/pygit2/default.nix index 47654ff34c6..2d4deb16276 100644 --- a/pkgs/development/python-modules/pygit2/default.nix +++ b/pkgs/development/python-modules/pygit2/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pygit2"; - version = "1.9.0"; + version = "1.9.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-xehYisrV4y+gWVWCVxBZ5rkOx8SHxYtOU8KADcveRMg="; + sha256 = "sha256-72R5w7YZKCUxawVjNtt36/9ueEmusfu4i3YAGsM3uck="; }; preConfigure = lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/development/python-modules/pykerberos/default.nix b/pkgs/development/python-modules/pykerberos/default.nix index fd4c0088b08..67246ffbb1a 100644 --- a/pkgs/development/python-modules/pykerberos/default.nix +++ b/pkgs/development/python-modules/pykerberos/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pykerberos"; - version = "1.2.3.dev0"; + version = "1.2.4"; src = fetchPypi { inherit pname version; - sha256 = "17zjiw6rqgfic32px86qls1i3z7anp15dgb3sprbdvywy98alryn"; + sha256 = "sha256-nXAevY/FlsmdMVXVukWBO9WQjSbvg7oK3SUO22IqvtQ="; }; nativeBuildInputs = [ krb5 ]; # for krb5-config diff --git a/pkgs/development/python-modules/pykeyatome/default.nix b/pkgs/development/python-modules/pykeyatome/default.nix index f4ea169b01e..26b23477f93 100644 --- a/pkgs/development/python-modules/pykeyatome/default.nix +++ b/pkgs/development/python-modules/pykeyatome/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pykeyatome"; - version = "1.4.1"; + version = "1.5.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -21,8 +21,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "jugla"; repo = "pyKeyAtome"; - rev = "V${version}"; - sha256 = "sha256-Gv418i2JLoovwagkZpv8PIJPW3I/0pRmXR/PJOJ2NBc="; + rev = "refs/tags/V${version}"; + sha256 = "sha256-LIPNCItD+qmk9NKAYbhEQC/A05Le9CNXECg7X2SlfdI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pylint/default.nix b/pkgs/development/python-modules/pylint/default.nix index b52cb3e2f95..dda915bb7ef 100644 --- a/pkgs/development/python-modules/pylint/default.nix +++ b/pkgs/development/python-modules/pylint/default.nix @@ -2,30 +2,35 @@ , lib , buildPythonPackage , fetchFromGitHub +, pythonAtLeast , pythonOlder , installShellFiles , astroid +, dill , isort -, GitPython , mccabe , platformdirs -, toml +, tomli +, typing-extensions +, GitPython , pytest-benchmark +, pytest-timeout , pytest-xdist , pytestCheckHook }: buildPythonPackage rec { pname = "pylint"; - version = "2.12.2"; + version = "2.13.5"; + format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.6.2"; src = fetchFromGitHub { owner = "PyCQA"; repo = pname; rev = "v${version}"; - sha256 = "sha256-seBYBTB+8PLIovqxVohkoQEfDAZI1fehLgXuHeTx9Wo="; + sha256 = "sha256-FB99vmUtoTc0cTjDUSbx80Tesh0vASigSpPktrDYk08="; }; nativeBuildInputs = [ @@ -34,10 +39,14 @@ buildPythonPackage rec { propagatedBuildInputs = [ astroid + dill isort mccabe platformdirs - toml + ] ++ lib.optionals (pythonOlder "3.11") [ + tomli + ] ++ lib.optionals (pythonOlder "3.9") [ + typing-extensions ]; postInstall = '' @@ -48,9 +57,12 @@ buildPythonPackage rec { checkInputs = [ GitPython + # https://github.com/PyCQA/pylint/blob/main/requirements_test_min.txt pytest-benchmark + pytest-timeout pytest-xdist pytestCheckHook + typing-extensions ]; dontUseSetuptoolsCheck = true; @@ -61,10 +73,6 @@ buildPythonPackage rec { export HOME=$TEMPDIR ''; - pytestFlagsArray = [ - "-n auto" - ]; - disabledTestPaths = [ # tests miss multiple input files # FileNotFoundError: [Errno 2] No such file or directory diff --git a/pkgs/development/python-modules/pymc3/default.nix b/pkgs/development/python-modules/pymc3/default.nix index 7c1e46647e3..54a12481e11 100644 --- a/pkgs/development/python-modules/pymc3/default.nix +++ b/pkgs/development/python-modules/pymc3/default.nix @@ -23,12 +23,12 @@ buildPythonPackage rec { pname = "pymc3"; - version = "3.11.4"; + version = "3.11.5"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "3b88d1e6c85f7fb8a9b99d6f136ac860672170370ec4146338fdd160c3b3fd3f"; + sha256 = "sha256-M0HLvZYpCROLfV6+TtfP7in0Cy/nyt64iLOda7wXE4w="; }; # No need for coverage stats in Nix builds diff --git a/pkgs/development/python-modules/pymemcache/default.nix b/pkgs/development/python-modules/pymemcache/default.nix index f2055ca9a79..81c05f4e97c 100644 --- a/pkgs/development/python-modules/pymemcache/default.nix +++ b/pkgs/development/python-modules/pymemcache/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, six , future , mock , pytestCheckHook @@ -9,6 +10,7 @@ buildPythonPackage rec { pname = "pymemcache"; version = "3.5.1"; + format = "setuptools"; src = fetchFromGitHub { owner = "pinterest"; @@ -17,6 +19,10 @@ buildPythonPackage rec { sha256 = "sha256-DKqfv5gf9gzbnEPQSzy2mAaVYJZL9jmTKyGWVzj40T4="; }; + propagatedBuildInputs = [ + six + ]; + checkInputs = [ future mock diff --git a/pkgs/development/python-modules/pymfy/default.nix b/pkgs/development/python-modules/pymfy/default.nix index ab5b21e8881..e48966e9da0 100644 --- a/pkgs/development/python-modules/pymfy/default.nix +++ b/pkgs/development/python-modules/pymfy/default.nix @@ -6,13 +6,14 @@ , pytestCheckHook , pythonOlder , requests -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { pname = "pymfy"; version = "0.11.0"; format = "pyproject"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { @@ -22,11 +23,13 @@ buildPythonPackage rec { sha256 = "0wpjwjmywfyqgwvfa5kwcjpaljc32qa088kk88nl9nqdvc31mzhv"; }; - nativeBuildInputs = [ poetry-core ]; + nativeBuildInputs = [ + poetry-core + ]; propagatedBuildInputs = [ requests - requests_oauthlib + requests-oauthlib ]; checkInputs = [ @@ -34,7 +37,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "pymfy" ]; + pythonImportsCheck = [ + "pymfy" + ]; meta = with lib; { description = "Python client for the Somfy Open API"; diff --git a/pkgs/development/python-modules/pympler/default.nix b/pkgs/development/python-modules/pympler/default.nix index 4f132ad2c82..6fc917981a7 100644 --- a/pkgs/development/python-modules/pympler/default.nix +++ b/pkgs/development/python-modules/pympler/default.nix @@ -1,6 +1,7 @@ { lib, stdenv , buildPythonPackage , fetchPypi +, pytestCheckHook }: buildPythonPackage rec { @@ -12,9 +13,15 @@ buildPythonPackage rec { sha256 = "993f1a3599ca3f4fcd7160c7545ad06310c9e12f70174ae7ae8d4e25f6c5d3fa"; }; - postPatch = '' - rm test/asizeof/test_asizeof.py - ''; + checkInputs = [ + pytestCheckHook + ]; + + disabledTests = [ + # 'AssertionError: 'function (test.muppy.test_summary.func)' != 'function (muppy.test_summary.func)' + # https://github.com/pympler/pympler/issues/134 + "test_repr_function" + ]; doCheck = stdenv.hostPlatform.isLinux; diff --git a/pkgs/development/python-modules/pynello/default.nix b/pkgs/development/python-modules/pynello/default.nix index 43852cbcd4c..a7a75d7c5dd 100644 --- a/pkgs/development/python-modules/pynello/default.nix +++ b/pkgs/development/python-modules/pynello/default.nix @@ -4,7 +4,7 @@ , python-dateutil , pythonOlder , requests -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { @@ -18,19 +18,21 @@ buildPythonPackage rec { owner = "pschmitt"; repo = pname; rev = version; - sha256 = "015rlccsn2vff9if82rjj2fza3bjbmawqhamc22wq40gq7pbfk5i"; + hash = "sha256-sUy37sEPEMyFYFVBzFVdcg31nZAyC+Ricm4LqxmjuQQ="; }; propagatedBuildInputs = [ python-dateutil requests - requests_oauthlib + requests-oauthlib ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "pynello" ]; + pythonImportsCheck = [ + "pynello" + ]; meta = with lib; { description = "Python library for nello.io intercoms"; diff --git a/pkgs/development/python-modules/pynetbox/default.nix b/pkgs/development/python-modules/pynetbox/default.nix index 14c74cc8669..e92776e72a2 100644 --- a/pkgs/development/python-modules/pynetbox/default.nix +++ b/pkgs/development/python-modules/pynetbox/default.nix @@ -10,13 +10,13 @@ buildPythonPackage rec { pname = "pynetbox"; - version = "6.6.1"; + version = "6.6.2"; src = fetchFromGitHub { owner = "netbox-community"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-8oqbnCAMq29QIp9ETbMa3Ve8tTuJzQ0D8KlOYnLdUgQ="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-W5ukrhqJTgOXM9MnbZWvNy9TCoEUGrFYfD+zGGNU07w="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/pyopenssl/default.nix b/pkgs/development/python-modules/pyopenssl/default.nix index e4655082af9..d629d97637f 100644 --- a/pkgs/development/python-modules/pyopenssl/default.nix +++ b/pkgs/development/python-modules/pyopenssl/default.nix @@ -4,13 +4,9 @@ , fetchPypi , openssl , cryptography -, pyasn1 -, idna , pytestCheckHook , pretend , flaky -, glibcLocales -, six }: buildPythonPackage rec { @@ -30,9 +26,9 @@ buildPythonPackage rec { doCheck = !stdenv.isDarwin; nativeBuildInputs = [ openssl ]; - propagatedBuildInputs = [ cryptography pyasn1 idna six ]; + propagatedBuildInputs = [ cryptography ]; - checkInputs = [ pytestCheckHook pretend flaky glibcLocales ]; + checkInputs = [ pytestCheckHook pretend flaky ]; preCheck = '' export LANG="en_US.UTF-8" diff --git a/pkgs/development/python-modules/pyparsing/default.nix b/pkgs/development/python-modules/pyparsing/default.nix index 449c5334e66..fb5abc5c352 100644 --- a/pkgs/development/python-modules/pyparsing/default.nix +++ b/pkgs/development/python-modules/pyparsing/default.nix @@ -5,6 +5,7 @@ # since this is a dependency of pytest, we need to avoid # circular dependencies , jinja2 +, pytestCheckHook , railroad-diagrams }: @@ -24,12 +25,11 @@ let doCheck = false; checkInputs = [ jinja2 + pytestCheckHook railroad-diagrams ]; - checkPhase = '' - python -m unittest - ''; + pythonImportsCheck = [ "pyparsing" ]; passthru.tests = { check = pyparsing.overridePythonAttrs (_: { doCheck = true; }); @@ -39,9 +39,7 @@ let homepage = "https://github.com/pyparsing/pyparsing"; description = "An alternative approach to creating and executing simple grammars, vs. the traditional lex/yacc approach, or the use of regular expressions"; license = licenses.mit; - maintainers = with maintainers; [ - kamadorueda - ]; + maintainers = with maintainers; [ kamadorueda ]; }; }; in diff --git a/pkgs/development/python-modules/pyppeteer/default.nix b/pkgs/development/python-modules/pyppeteer/default.nix index 153be45ca8f..a1857ec7206 100644 --- a/pkgs/development/python-modules/pyppeteer/default.nix +++ b/pkgs/development/python-modules/pyppeteer/default.nix @@ -1,6 +1,7 @@ { lib , appdirs , buildPythonPackage +, certifi , fetchFromGitHub , importlib-metadata , poetry-core @@ -16,7 +17,7 @@ buildPythonPackage rec { pname = "pyppeteer"; - version = "0.2.6"; + version = "1.0.2"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -25,7 +26,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = version; - sha256 = "sha256-mMFQp8GMjKUc3yyB4c8Tgxut7LkMFa2cySO3iSA/aI4="; + sha256 = "sha256-izMaWtJdkLHMQbyq7o7n46xB8dOHXZ5uO0UXt+twjL4="; }; nativeBuildInputs = [ @@ -34,6 +35,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ appdirs + certifi importlib-metadata pyee tqdm @@ -49,6 +51,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ + --replace 'pyee = "^8.1.0"' 'pyee = "*"' \ --replace 'websockets = "^9.1"' 'websockets = "*"' ''; diff --git a/pkgs/development/python-modules/pyrad/default.nix b/pkgs/development/python-modules/pyrad/default.nix index 67841cab7d9..c8fb0310548 100644 --- a/pkgs/development/python-modules/pyrad/default.nix +++ b/pkgs/development/python-modules/pyrad/default.nix @@ -1,8 +1,17 @@ -{ buildPythonPackage, fetchFromGitHub, lib, netaddr, six, nose }: +{ buildPythonPackage +, fetchFromGitHub +, fetchpatch +, lib +, poetry-core +, netaddr +, six +, python +}: buildPythonPackage rec { pname = "pyrad"; version = "2.4"; + format = "pyproject"; src = fetchFromGitHub { owner = "pyradius"; @@ -11,19 +20,43 @@ buildPythonPackage rec { sha256 = "sha256-oqgkE0xG/8cmLeRZdGoHkaHbjtByeJwzBJwEdxH8oNY="; }; - propagatedBuildInputs = [ netaddr six ]; - checkInputs = [ nose ]; + patches = [ + (fetchpatch { + # Migrate to poetry-core + url = "https://github.com/pyradius/pyrad/commit/a4b70067dd6269e14a2f9530d820390a8a454231.patch"; + hash = "sha256-1We9wrVY3Or3GLIKK6hZvEjVYv6JOaahgP9zOMvgErE="; + }) + ]; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + netaddr + six + ]; + + preCheck = '' + substituteInPlace tests/testServer.py \ + --replace "def testBind(self):" "def dontTestBind(self):" \ + --replace "def testBindv6(self):" "def dontTestBindv6(self):" + ''; checkPhase = '' - nosetests -e testBind + runHook preCheck + ${python.interpreter} -m unittest discover + runHook postCheck ''; - pythonImportsCheck = [ "pyrad" ]; + pythonImportsCheck = [ + "pyrad" + ]; meta = with lib; { description = "Python RADIUS Implementation"; - homepage = "https://bitbucket.org/zzzeek/sqlsoup"; + homepage = "https://github.com/pyradius/pyrad"; license = licenses.bsd3; - maintainers = [ maintainers.globin ]; + maintainers = with maintainers; [ globin ]; }; } diff --git a/pkgs/development/python-modules/pyramid_jinja2/default.nix b/pkgs/development/python-modules/pyramid_jinja2/default.nix index d1eaf49e6bc..455f4fb73b6 100644 --- a/pkgs/development/python-modules/pyramid_jinja2/default.nix +++ b/pkgs/development/python-modules/pyramid_jinja2/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "pyramid_jinja2"; - version = "2.8"; + version = "2.10"; src = fetchPypi { inherit pname version; - sha256 = "81e0615cb3108f2a251ff3141ad0d698a5d03685819f3a836ea84787e8489502"; + sha256 = "sha256-8nEGnZ6ay6x622kSGQqEj2M49+V6+68+lSN/6DzI9NI="; }; buildInputs = [ webtest ]; diff --git a/pkgs/development/python-modules/pyro-ppl/default.nix b/pkgs/development/python-modules/pyro-ppl/default.nix index f810cf6f37b..d4837dd9fb1 100644 --- a/pkgs/development/python-modules/pyro-ppl/default.nix +++ b/pkgs/development/python-modules/pyro-ppl/default.nix @@ -2,12 +2,12 @@ , graphviz, networkx, six, opt-einsum, tqdm, pyro-api }: buildPythonPackage rec { - version = "1.8.0"; + version = "1.8.1"; pname = "pyro-ppl"; src = fetchPypi { inherit version pname; - sha256 = "68e4ea30f219227dd88e55de2550d3f8c20a20adbdb67ad1e13b50868bb2ac0c"; + sha256 = "sha256-18BJ6y50haYStN2ZwkwwnMhgx8vGsZczhwNPVDbRyNY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyrogram/default.nix b/pkgs/development/python-modules/pyrogram/default.nix index 971b8015a41..d4d49fd2626 100644 --- a/pkgs/development/python-modules/pyrogram/default.nix +++ b/pkgs/development/python-modules/pyrogram/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pyrogram"; - version = "1.4.12"; + version = "1.4.16"; disabled = pythonOlder "3.6"; src = fetchPypi { pname = "Pyrogram"; inherit version; - hash = "sha256-rNGdWnZuhCU0Kg/CkeNjazKb76h8/VanZdF4yi0KWGU="; + hash = "sha256-ZYAPaAa92z3KtciVHOexdZf9bwZjKQ9WKg6+We0dW+Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyslurm/default.nix b/pkgs/development/python-modules/pyslurm/default.nix index f25651dcf98..248ccc41033 100644 --- a/pkgs/development/python-modules/pyslurm/default.nix +++ b/pkgs/development/python-modules/pyslurm/default.nix @@ -1,17 +1,27 @@ -{ lib, fetchFromGitHub, buildPythonPackage, cython, slurm }: +{ lib +, pythonOlder +, fetchFromGitHub +, buildPythonPackage +, cython +, slurm +}: buildPythonPackage rec { pname = "pyslurm"; - version = "19-05-0"; + version = "21.08.4"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { repo = "pyslurm"; owner = "PySlurm"; - rev = version; - sha256 = "1lfb4q81y96syz5an1lzscfcvmfvlkf4cfl3i5zllw9r3gbarl2r"; + rev = "v${version}"; + hash = "sha256-9ZYTBO8g+5B9D8Ll5JjkJYFyh0RQNIjxg958UZoCNmA="; }; buildInputs = [ cython slurm ]; + setupPyBuildFlags = [ "--slurm-lib=${slurm}/lib" "--slurm-inc=${slurm.dev}/include" ]; # Test cases need /etc/slurm/slurm.conf and require a working slurm installation @@ -23,6 +33,5 @@ buildPythonPackage rec { license = licenses.gpl2; maintainers = with maintainers; [ bhipple ]; platforms = platforms.linux; - broken = true; # still needs slurm-19.05, but nixpkgs has slurm-20+ now }; } diff --git a/pkgs/development/python-modules/pysmappee/default.nix b/pkgs/development/python-modules/pysmappee/default.nix index c2322819ae4..ae9d5fa9830 100644 --- a/pkgs/development/python-modules/pysmappee/default.nix +++ b/pkgs/development/python-modules/pysmappee/default.nix @@ -1,25 +1,27 @@ { lib , buildPythonPackage -, fetchFromGitHub , cachetools +, fetchFromGitHub , paho-mqtt +, pythonOlder , pytz , requests -, requests_oauthlib +, requests-oauthlib , schedule -, pythonOlder }: buildPythonPackage rec { pname = "pysmappee"; version = "0.2.29"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "smappee"; repo = pname; rev = version; - sha256 = "sha256-Ffi55FZsZUKDcS4qV46NpRK3VP6axzrL2BO+hYW7J9E="; + hash = "sha256-Ffi55FZsZUKDcS4qV46NpRK3VP6axzrL2BO+hYW7J9E="; }; propagatedBuildInputs = [ @@ -27,14 +29,16 @@ buildPythonPackage rec { paho-mqtt pytz requests - requests_oauthlib + requests-oauthlib schedule ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "pysmappee" ]; + pythonImportsCheck = [ + "pysmappee" + ]; meta = with lib; { description = "Python Library for the Smappee dev API"; diff --git a/pkgs/development/python-modules/pysnow/default.nix b/pkgs/development/python-modules/pysnow/default.nix index 1c9fccb7068..5baa9e90321 100644 --- a/pkgs/development/python-modules/pysnow/default.nix +++ b/pkgs/development/python-modules/pysnow/default.nix @@ -1,56 +1,72 @@ { lib +, brotli , buildPythonPackage , fetchFromGitHub -, poetry -, brotli -, ijson -, nose +, fetchpatch , httpretty -, requests_oauthlib +, ijson +, poetry-core , python_magic , pytz +, pytestCheckHook +, requests-oauthlib }: buildPythonPackage rec { pname = "pysnow"; version = "0.7.16"; + format = "pyproject"; + - # tests not included in pypi tarball src = fetchFromGitHub { owner = "rbw"; repo = pname; rev = version; - sha256 = "0dj90w742klfcjnx7yhp0nzki2mzafqzzr0rk2dp6vxn8h58z8ww"; + hash = "sha256-nKOPCkS2b3ObmBnk/7FTv4o4vwUX+tOtZI5OQQ4HSTY="; }; - format = "pyproject"; - postPatch = '' - substituteInPlace pyproject.toml \ - --replace 'ijson = "^2.5.1"' 'ijson = "*"' \ - --replace 'pytz = "^2019.3"' 'pytz = "*"' \ - --replace 'oauthlib = "^3.1.0"' 'oauthlib = "*"' - ''; + nativeBuildInputs = [ + poetry-core + ]; - nativeBuildInputs = [ poetry ]; propagatedBuildInputs = [ brotli ijson python_magic pytz - requests_oauthlib + requests-oauthlib + ]; + + checkInputs = [ + httpretty + pytestCheckHook ]; - checkInputs = [ nose httpretty ]; - checkPhase = '' - nosetests --cover-package=pysnow --with-coverage --cover-erase + patches = [ + # Switch to peotry-core, https://github.com/rbw/pysnow/pull/183 + (fetchpatch { + name = "switch-to-poetry-core.patch"; + url = "https://github.com/rbw/pysnow/commit/f214a203432b329df5317f3a25b2c0d9b55a9029.patch"; + sha256 = "sha256-ViRR+9WStlaQwyrLGk/tMOUAcEMY+kB61ZEKGMQJ30o="; + }) + ]; + + postPatch = '' + substituteInPlace pyproject.toml \ + --replace 'ijson = "^2.5.1"' 'ijson = "*"' \ + --replace 'pytz = "^2019.3"' 'pytz = "*"' \ + --replace 'oauthlib = "^3.1.0"' 'oauthlib = "*"' ''; - pythonImportsCheck = [ "pysnow" ]; + + pythonImportsCheck = [ + "pysnow" + ]; meta = with lib; { description = "ServiceNow HTTP client library written in Python"; homepage = "https://github.com/rbw/pysnow"; license = licenses.mit; - maintainers = [ maintainers.almac ]; + maintainers = with maintainers; [ almac ]; }; } diff --git a/pkgs/development/python-modules/pyspark/default.nix b/pkgs/development/python-modules/pyspark/default.nix index c424e3195e7..6acc5b3bf92 100644 --- a/pkgs/development/python-modules/pyspark/default.nix +++ b/pkgs/development/python-modules/pyspark/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { sed -i "s/'pypandoc'//" setup.py substituteInPlace setup.py \ - --replace py4j==0.10.9.2 'py4j>=0.10.9,<0.11' + --replace py4j==0.10.9.3 'py4j>=0.10.9,<0.11' ''; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytest-asyncio/default.nix b/pkgs/development/python-modules/pytest-asyncio/default.nix index da60feb724f..8c368c50e32 100644 --- a/pkgs/development/python-modules/pytest-asyncio/default.nix +++ b/pkgs/development/python-modules/pytest-asyncio/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pytest-asyncio"; - version = "0.18.1"; + version = "0.18.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "pytest-dev"; repo = pname; rev = "v${version}"; - hash = "sha256-9KN45+Pdz40rJv1NUxuoy8xWtLGt7kz7YcqfjfZ9x4A="; + hash = "sha256-eopKlDKiTvGmqcqw44MKlhvSKswKZd/VDYRpZbuyOqM="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -29,17 +29,20 @@ buildPythonPackage rec { setuptools-scm ]; - propagatedBuildInputs = [ + buildInputs = [ pytest ]; checkInputs = [ flaky hypothesis - flaky pytestCheckHook ]; + disabledTestPaths = [ + "tests/trio" # pytest-trio causes infinite recursion + ]; + pythonImportsCheck = [ "pytest_asyncio" ]; @@ -47,6 +50,7 @@ buildPythonPackage rec { meta = with lib; { description = "Library for testing asyncio code with pytest"; homepage = "https://github.com/pytest-dev/pytest-asyncio"; + changelog = "https://github.com/pytest-dev/pytest-asyncio/blob/${src.rev}/CHANGELOG.rst"; license = licenses.asl20; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/python-modules/pytest-check/default.nix b/pkgs/development/python-modules/pytest-check/default.nix index 3498b9f8ab9..c690e01778b 100644 --- a/pkgs/development/python-modules/pytest-check/default.nix +++ b/pkgs/development/python-modules/pytest-check/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "pytest-check"; - version = "1.0.4"; + version = "1.0.5"; format = "flit"; src = fetchPypi { pname = "pytest_check"; inherit version; - sha256 = "c93eee5a98bcd28634a4ec657ab62c46d25fa384300811e5a925d9c4d98b9540"; + sha256 = "sha256-ucjbax3uPB5mFivQebgcCDKWy3Ex6YQVGcKKQIGKSHU="; }; buildInputs = [ pytest ]; diff --git a/pkgs/development/python-modules/pytest-describe/default.nix b/pkgs/development/python-modules/pytest-describe/default.nix new file mode 100644 index 00000000000..7f5fbf36159 --- /dev/null +++ b/pkgs/development/python-modules/pytest-describe/default.nix @@ -0,0 +1,40 @@ +{ lib +, buildPythonPackage +, fetchPypi + +# build +, pytest + +# tests +, pytestCheckHook +}: + +let + pname = "pytest-describe"; + version = "2.0.1"; +in +buildPythonPackage { + inherit pname version; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-5cuqMRafAGA0itXKAZECfl8fQfPyf97vIINl4JxV65o="; + }; + + buildInputs = [ + pytest + ]; + + checkInputs = [ + pytestCheckHook + ]; + + meta = with lib; { + description = "Describe-style plugin for the pytest framework"; + homepage = "https://github.com/pytest-dev/pytest-describe"; + changelog = "https://github.com/pytest-dev/pytest-describe/releases/tag/${version}"; + license = licenses.mit; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/python-modules/pytest-httpbin/default.nix b/pkgs/development/python-modules/pytest-httpbin/default.nix index 0069eb6f179..7dc70c49280 100644 --- a/pkgs/development/python-modules/pytest-httpbin/default.nix +++ b/pkgs/development/python-modules/pytest-httpbin/default.nix @@ -28,6 +28,12 @@ buildPythonPackage rec { six ]; + preCheck = '' + # Remove assertion that doesn't hold for Flask 2.1.0 + substituteInPlace tests/test_server.py \ + --replace "assert response.headers['Location'].startswith('https://')" "" + ''; + checkInputs = [ pytestCheckHook requests diff --git a/pkgs/development/python-modules/pytest-metadata/default.nix b/pkgs/development/python-modules/pytest-metadata/default.nix index 9f04cbe407d..057eb06ab3e 100644 --- a/pkgs/development/python-modules/pytest-metadata/default.nix +++ b/pkgs/development/python-modules/pytest-metadata/default.nix @@ -1,13 +1,20 @@ -{ lib, buildPythonPackage, fetchPypi -, pytest, setuptools-scm }: +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, pythonOlder +, setuptools-scm +}: buildPythonPackage rec { pname = "pytest-metadata"; - version = "1.11.0"; + version = "2.0.1"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "71b506d49d34e539cc3cfdb7ce2c5f072bea5c953320002c95968e0238f8ecf1"; + sha256 = "sha256-XNtq7qi6kQkYHPnxScijrhQw/35EUGqPhmr4qYykYwE="; }; nativeBuildInputs = [ setuptools-scm ]; diff --git a/pkgs/development/python-modules/pytest-mock/default.nix b/pkgs/development/python-modules/pytest-mock/default.nix index 94db409be91..837dec7c96d 100644 --- a/pkgs/development/python-modules/pytest-mock/default.nix +++ b/pkgs/development/python-modules/pytest-mock/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, fetchpatch , fetchPypi , pytest , pytest-asyncio @@ -16,6 +17,14 @@ buildPythonPackage rec { hash = "sha256-URK9ksyfGG7pbhqS78hJaepJSTnDrq05xQ9CHEzGlTQ="; }; + patches = [ + (fetchpatch { + # pytest7 compatbilitya + url = "https://github.com/pytest-dev/pytest-mock/commit/0577f1ad051fb8d0da94ea22dcb02346d74064b2.patch"; + hash = "sha256-eim4v7U8Mjigr462bXI0pKH/M0ANBzSRc0lT4RpbZ0w="; + }) + ]; + nativeBuildInputs = [ setuptools-scm ]; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytest-mpl/default.nix b/pkgs/development/python-modules/pytest-mpl/default.nix index b5a5775f56e..040299ad544 100644 --- a/pkgs/development/python-modules/pytest-mpl/default.nix +++ b/pkgs/development/python-modules/pytest-mpl/default.nix @@ -1,7 +1,9 @@ { lib , buildPythonPackage , fetchPypi +, setuptools-scm , pytest +, jinja2 , matplotlib , nose , pillow @@ -17,11 +19,18 @@ buildPythonPackage rec { sha256 = "sha256-iE4HjS1TgK9WQzhOIzw1jpZZgl+y2X/9r48YXENMjYk="; }; + nativeBuildInputs = [ + setuptools-scm + ]; + buildInputs = [ pytest ]; + SETUPTOOLS_SCM_PRETEND_VERSION=version; + propagatedBuildInputs = [ + jinja2 matplotlib nose pillow @@ -31,12 +40,18 @@ buildPythonPackage rec { pytestCheckHook ]; - # Broken since b6e98f18950c2b5dbdc725c1181df2ad1be19fee + disabledTests = [ + # Broken since b6e98f18950c2b5dbdc725c1181df2ad1be19fee "test_hash_fails" "test_hash_missing" ]; + disabledTestPaths = [ + # Following are broken since at least a1548780dbc79d76360580691dc1bb4af4e837f6 + "tests/subtests/test_subtest.py" + ]; + preCheck = '' export HOME=$(mktemp -d) mkdir -p $HOME/.config/matplotlib diff --git a/pkgs/development/python-modules/pytest-pep257/default.nix b/pkgs/development/python-modules/pytest-pep257/default.nix deleted file mode 100644 index 827386786b7..00000000000 --- a/pkgs/development/python-modules/pytest-pep257/default.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ lib, buildPythonPackage, fetchPypi, pytest, pep257 }: - -buildPythonPackage rec { - pname = "pytest-pep257"; - version = "0.0.5"; - - src = fetchPypi { - inherit pname version; - sha256 = "082v3d5k4331x53za51kl8zxsndsw1pcyf1xdfpb2gjdjrhixb8w"; - }; - - buildInputs = [ pytest ]; - propagatedBuildInputs = [ pep257 ]; - - meta = with lib; { - homepage = "https://github.com/anderslime/pytest-pep257"; - description = "py.test plugin for PEP257"; - license = licenses.mit; - }; -} diff --git a/pkgs/development/python-modules/pytest-shutil/default.nix b/pkgs/development/python-modules/pytest-shutil/default.nix index e43a837d6aa..e3b2277fa99 100644 --- a/pkgs/development/python-modules/pytest-shutil/default.nix +++ b/pkgs/development/python-modules/pytest-shutil/default.nix @@ -1,6 +1,6 @@ { lib, isPyPy, buildPythonPackage, fetchPypi -, pytest, cmdline, pytest-cov, coverage, setuptools-git, mock, pathpy, execnet -, contextlib2, termcolor }: +, pytest, cmdline, pytest-cov, coverage, setuptools-git, mock, path, execnet +, contextlib2, termcolor, six }: buildPythonPackage rec { pname = "pytest-shutil"; @@ -11,9 +11,14 @@ buildPythonPackage rec { sha256 = "0q8j0ayzmnvlraml6i977ybdq4xi096djhf30n2m1rvnvrhm45nq"; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "path.py" "path" + ''; + buildInputs = [ pytest ]; checkInputs = [ cmdline pytest ]; - propagatedBuildInputs = [ pytest-cov coverage setuptools-git mock pathpy execnet contextlib2 termcolor ]; + propagatedBuildInputs = [ pytest-cov coverage setuptools-git mock path execnet contextlib2 termcolor six ]; checkPhase = '' py.test ${lib.optionalString isPyPy "-k'not (test_run or test_run_integration)'"} diff --git a/pkgs/development/python-modules/pytest-testmon/default.nix b/pkgs/development/python-modules/pytest-testmon/default.nix index 3a397001865..0f8d09e597d 100644 --- a/pkgs/development/python-modules/pytest-testmon/default.nix +++ b/pkgs/development/python-modules/pytest-testmon/default.nix @@ -8,24 +8,19 @@ buildPythonPackage rec { pname = "pytest-testmon"; - version = "1.3.0"; + version = "1.3.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-1Qyroq6Dv11EaCGRAj19bKQBfRz26XSh5TJY7xA/vBE="; + sha256 = "sha256-6gWWCtm/GHknhjLyRdVf42koeaSKzk5/V0173DELmj0="; }; - propagatedBuildInputs = [ coverage ]; + propagatedBuildInputs = [ pytest coverage ]; - checkInputs = [ pytest ]; - - # avoid tests which try to import unittest_mixins - # unittest_mixins doesn't seem to be very active - checkPhase = '' - cd test - pytest test_{core,process_code,pytest_assumptions}.py - ''; + # The project does not include tests since version 1.3.0 + doCheck = false; + pythonImportsCheck = [ "testmon" ]; meta = with lib; { homepage = "https://github.com/tarpas/pytest-testmon/"; diff --git a/pkgs/development/python-modules/pytest-xdist/default.nix b/pkgs/development/python-modules/pytest-xdist/default.nix index fa1b0f63fab..b17b6f2f763 100644 --- a/pkgs/development/python-modules/pytest-xdist/default.nix +++ b/pkgs/development/python-modules/pytest-xdist/default.nix @@ -9,6 +9,7 @@ , pytest , pytest-forked , psutil +, pexpect }: buildPythonPackage rec { @@ -25,9 +26,15 @@ buildPythonPackage rec { buildInputs = [ pytest ]; - checkInputs = [ pytestCheckHook filelock ]; + checkInputs = [ pytestCheckHook filelock pexpect ]; propagatedBuildInputs = [ execnet pytest-forked psutil ]; + pytestFlagsArray = [ + # pytest can already use xdist at this point + "--numprocesses=$NIX_BUILD_CORES" + "--forked" + ]; + # access file system disabledTests = [ "test_distribution_rsyncdirs_example" @@ -40,6 +47,8 @@ buildPythonPackage rec { "test_internal_errors_propagate_to_controller" ]; + setupHook = ./setup-hook.sh; + meta = with lib; { description = "Pytest xdist plugin for distributed testing and loop-on-failing modes"; homepage = "https://github.com/pytest-dev/pytest-xdist"; diff --git a/pkgs/development/python-modules/pytest-xdist/setup-hook.sh b/pkgs/development/python-modules/pytest-xdist/setup-hook.sh new file mode 100644 index 00000000000..5523a7f360f --- /dev/null +++ b/pkgs/development/python-modules/pytest-xdist/setup-hook.sh @@ -0,0 +1,18 @@ +pytestXdistHook() { + pytestFlagsArray+=( + "--numprocesses=$NIX_BUILD_CORES" + "--forked" + ) +} + +# the flags should be added before pytestCheckHook runs so +# until we have dependency mechanism in generic builder, we need to use this ugly hack. + +if [ -z "${dontUsePytestXdist-}" ] && [ -z "${dontUsePytestCheck-}" ]; then + if [[ " ${preDistPhases:-} " =~ " pytestCheckPhase " ]]; then + preDistPhases+=" " + preDistPhases="${preDistPhases/ pytestCheckPhase / pytestXdistHook pytestCheckPhase }" + else + preDistPhases+=" pytestXdistHook" + fi +fi diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix index 109e9182858..8c40c835feb 100644 --- a/pkgs/development/python-modules/pytest/default.nix +++ b/pkgs/development/python-modules/pytest/default.nix @@ -1,47 +1,48 @@ -{ lib, buildPythonPackage, pythonOlder, fetchPypi, isPy3k, isPyPy -, atomicwrites +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, isPyPy +, writeText + +# build +, setuptools-scm + +# propagates , attrs -, hypothesis , iniconfig -, more-itertools , packaging -, pathlib2 , pluggy , py -, pygments -, setuptools -, setuptools-scm -, six , tomli -, wcwidth -, writeText + +# tests +, hypothesis +, pygments }: buildPythonPackage rec { pname = "pytest"; - version = "7.0.1"; - disabled = !isPy3k; + version = "7.1.1"; + format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-4wkFoMEx09lLiWJKHMWv7D4LovvbFRhn2ODr1JhQ8XE="; + sha256 = "sha256-hBEyyu9rGtF6mv3kbcT2z6WaBflVWq5RUfc73yggymM="; }; - nativeBuildInputs = [ setuptools-scm ]; + nativeBuildInputs = [ + setuptools-scm + ]; propagatedBuildInputs = [ - atomicwrites attrs iniconfig - more-itertools packaging pluggy py - setuptools - six tomli - wcwidth - ] ++ lib.optionals (pythonOlder "3.6") [ pathlib2 ]; + ]; checkInputs = [ hypothesis @@ -50,17 +51,13 @@ buildPythonPackage rec { doCheck = !isPyPy; # https://github.com/pytest-dev/pytest/issues/3460 - preCheck = '' - # don't test bash builtins - rm testing/test_argcomplete.py - ''; - # Ignored file https://github.com/pytest-dev/pytest/pull/5605#issuecomment-522243929 # test_missing_required_plugins will emit deprecation warning which is treated as error checkPhase = '' runHook preCheck $out/bin/py.test -x testing/ \ --ignore=testing/test_junitxml.py \ + --ignore=testing/test_argcomplete.py \ -k "not test_collect_pyargs_with_testpaths and not test_missing_required_plugins" # tests leave behind unreproducible pytest binaries in the output directory, remove: @@ -86,7 +83,7 @@ buildPythonPackage rec { # - files are not needed after tests are finished pytestRemoveBytecodePhase () { # suffix is defined at: - # https://github.com/pytest-dev/pytest/blob/7.0.1/src/_pytest/assertion/rewrite.py#L51-L53 + # https://github.com/pytest-dev/pytest/blob/7.1.1/src/_pytest/assertion/rewrite.py#L51-L53 find $out -name "*-pytest-*.py[co]" -delete } preDistPhases+=" pytestRemoveBytecodePhase" diff --git a/pkgs/development/python-modules/python-dotenv/default.nix b/pkgs/development/python-modules/python-dotenv/default.nix index 774ca6855ae..d1b5d632b30 100644 --- a/pkgs/development/python-modules/python-dotenv/default.nix +++ b/pkgs/development/python-modules/python-dotenv/default.nix @@ -11,12 +11,12 @@ buildPythonPackage rec { pname = "python-dotenv"; - version = "0.19.2"; + version = "0.20.0"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "a5de49a31e953b45ff2d2fd434bbc2670e8db5273606c1e737cc6b93eff3655f"; + sha256 = "sha256-t+OwSllpPELDb5qxzCrMRvpd+MeOF4/DOo1M0FyNSY8="; }; propagatedBuildInputs = [ click ]; diff --git a/pkgs/development/python-modules/python-google-nest/default.nix b/pkgs/development/python-modules/python-google-nest/default.nix index a1e612e1f74..3d086fa2684 100644 --- a/pkgs/development/python-modules/python-google-nest/default.nix +++ b/pkgs/development/python-modules/python-google-nest/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , pythonOlder -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { @@ -14,11 +14,11 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "y3BOhorVkJ3rFPifNOopLMqk6y1fHX5vxHGiqWvWHhE="; + hash = "sha256-y3BOhorVkJ3rFPifNOopLMqk6y1fHX5vxHGiqWvWHhE="; }; propagatedBuildInputs = [ - requests_oauthlib + requests-oauthlib ]; # Project has no tests diff --git a/pkgs/development/python-modules/python-logstash/default.nix b/pkgs/development/python-modules/python-logstash/default.nix index 55d3c60cd44..7930dcd33e0 100644 --- a/pkgs/development/python-modules/python-logstash/default.nix +++ b/pkgs/development/python-modules/python-logstash/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "python-logstash"; - version = "0.4.6"; + version = "0.4.8"; src = fetchPypi { inherit pname version; - sha256 = "13763yx0k655y0c8gxv7jj6cqp45zypx2fmnc56jnn9zz1fkx50h"; + sha256 = "sha256-0E4c4R7MEH5KTzuAf8V9loEelkpVQIGzu7RHMvdO9fk="; }; # no tests diff --git a/pkgs/development/python-modules/python-miio/default.nix b/pkgs/development/python-modules/python-miio/default.nix index c1391995dda..3cbc48c3cd6 100644 --- a/pkgs/development/python-modules/python-miio/default.nix +++ b/pkgs/development/python-modules/python-miio/default.nix @@ -1,24 +1,24 @@ { lib +, android-backup +, appdirs +, attrs , buildPythonPackage -, pythonOlder -, fetchPypi -, poetry-core , click -, cryptography , construct -, zeroconf -, attrs -, pytz -, appdirs -, tqdm -, netifaces -, android-backup -, importlib-metadata , croniter +, cryptography , defusedxml -, pytestCheckHook +, fetchPypi +, importlib-metadata +, netifaces +, poetry-core , pytest-mock +, pytestCheckHook +, pythonOlder +, pytz , pyyaml +, tqdm +, zeroconf }: @@ -57,13 +57,16 @@ buildPythonPackage rec { ]; checkInputs = [ - pytestCheckHook pytest-mock + pytestCheckHook ]; postPatch = '' substituteInPlace pyproject.toml \ - --replace 'defusedxml = "^0"' 'defusedxml = "*"' \ + --replace 'defusedxml = "^0"' 'defusedxml = "*"' + # Will be fixed with the next release, https://github.com/rytilahti/python-miio/pull/1378 + substituteInPlace miio/integrations/vacuum/roborock/vacuum_cli.py \ + --replace "resultcallback" "result_callback" ''; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/python-registry/default.nix b/pkgs/development/python-modules/python-registry/default.nix index fbf8df7f322..8b24ca08ff8 100644 --- a/pkgs/development/python-modules/python-registry/default.nix +++ b/pkgs/development/python-modules/python-registry/default.nix @@ -4,6 +4,7 @@ , fetchFromGitHub , pytestCheckHook , unicodecsv +, six }: buildPythonPackage rec { @@ -24,6 +25,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook + six ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/python-twitter/default.nix b/pkgs/development/python-modules/python-twitter/default.nix index f6814a8d0fd..79d262a8b02 100644 --- a/pkgs/development/python-modules/python-twitter/default.nix +++ b/pkgs/development/python-modules/python-twitter/default.nix @@ -2,20 +2,23 @@ , buildPythonPackage , fetchFromGitHub , fetchpatch -, pytest-runner +, filetype , future +, hypothesis +, pytestCheckHook +, pythonOlder , requests +, requests-oauthlib , responses -, requests_oauthlib -, pytest -, hypothesis }: buildPythonPackage rec { pname = "python-twitter"; version = "3.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; - # No tests in PyPi Tarball src = fetchFromGitHub { owner = "bear"; repo = pname; @@ -31,12 +34,30 @@ buildPythonPackage rec { }) ]; - nativeBuildInputs = [ pytest-runner ]; - propagatedBuildInputs = [ future requests requests_oauthlib ]; - checkInputs = [ pytest responses hypothesis ]; + propagatedBuildInputs = [ + filetype + future + requests + requests-oauthlib + ]; + + checkInputs = [ + pytestCheckHook + responses + hypothesis + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace "'pytest-runner'" "" + ''; + + pythonImportsCheck = [ + "twitter" + ]; meta = with lib; { - description = "A Python wrapper around the Twitter API"; + description = "Python wrapper around the Twitter API"; homepage = "https://github.com/bear/python-twitter"; license = licenses.asl20; maintainers = [ maintainers.marsam ]; diff --git a/pkgs/development/python-modules/python-vagrant/default.nix b/pkgs/development/python-modules/python-vagrant/default.nix index 92ba757667d..9984931e3a9 100644 --- a/pkgs/development/python-modules/python-vagrant/default.nix +++ b/pkgs/development/python-modules/python-vagrant/default.nix @@ -1,17 +1,22 @@ { lib, buildPythonPackage, fetchPypi }: buildPythonPackage rec { - version = "0.5.15"; + version = "1.0.0"; pname = "python-vagrant"; + format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "1ikrh6canhcxg5y7pzmkcnnydikppv7s6sm9prfx90nk0ac8m6mg"; + sha256 = "sha256-qP6TzPL/N+zJXsL0nqdKkabOc6TbShapjdJtOXz9CeU="; }; # The tests try to connect to qemu doCheck = false; + pythonImportsCheck = [ + "vagrant" + ]; + meta = { description = "Python module that provides a thin wrapper around the vagrant command line executable"; homepage = "https://github.com/todddeluca/python-vagrant"; diff --git a/pkgs/development/python-modules/python3-saml/default.nix b/pkgs/development/python-modules/python3-saml/default.nix index 8bc9cf3090f..dca35089f45 100644 --- a/pkgs/development/python-modules/python3-saml/default.nix +++ b/pkgs/development/python-modules/python3-saml/default.nix @@ -13,6 +13,11 @@ buildPythonPackage rec { sha256 = "sha256-TAfVXh1fSKhNn/lsi7elq4wFyKCxCtCYUTrnH3ytBTw="; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "lxml<4.7.1" "lxml<5" + ''; + propagatedBuildInputs = [ isodate lxml xmlsec ]; diff --git a/pkgs/development/python-modules/pytomorrowio/default.nix b/pkgs/development/python-modules/pytomorrowio/default.nix new file mode 100644 index 00000000000..2c695fc7e05 --- /dev/null +++ b/pkgs/development/python-modules/pytomorrowio/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, aiohttp +, pytest-asyncio +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "pytomorrowio"; + version = "0.2.1"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "aabb41436fb5834b687d73b334d95be07a18d5943d27a1fd06271b749558ba0e"; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + checkInputs = [ + pytest-asyncio + pytestCheckHook + ]; + + pythonImportsCheck = [ "pytomorrowio" ]; + + meta = { + description = "Async Python package to access the Tomorrow.io API"; + homepage = "https://github.com/raman325/pytomorrowio"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/pytools/default.nix b/pkgs/development/python-modules/pytools/default.nix index f4710872cbe..2ee74e64b06 100644 --- a/pkgs/development/python-modules/pytools/default.nix +++ b/pkgs/development/python-modules/pytools/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "pytools"; - version = "2022.1"; + version = "2022.1.2"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-GXqs9uH11gxxW5JDh5Kst3Aq7Vnrv7FH+oTtp4DlT+4="; + sha256 = "sha256-XoJBAYgKJGNUdWNliAplu0FvaoyrZRO2j8u0j7oJD8s="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytorch/bin.nix b/pkgs/development/python-modules/pytorch/bin.nix index 24533a08e47..daa82bba580 100644 --- a/pkgs/development/python-modules/pytorch/bin.nix +++ b/pkgs/development/python-modules/pytorch/bin.nix @@ -76,6 +76,7 @@ in buildPythonPackage { # https://www.intel.com/content/www/us/en/developer/articles/license/onemkl-license-faq.html license = licenses.bsd3; platforms = platforms.linux ++ platforms.darwin; + hydraPlatforms = []; # output size 3.2G on 1.11.0 maintainers = with maintainers; [ junjihashimoto ]; }; } diff --git a/pkgs/development/python-modules/pytz/default.nix b/pkgs/development/python-modules/pytz/default.nix index f7f406e487c..27b18845804 100644 --- a/pkgs/development/python-modules/pytz/default.nix +++ b/pkgs/development/python-modules/pytz/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pytz"; - version = "2021.3"; + version = "2022.1"; src = fetchPypi { inherit pname version; - sha256 = "acad2d8b20a1af07d4e4c9d2e9285c5ed9104354062f275f3fcd88dcef4f1326"; + sha256 = "sha256-HnYOL+aoFjvAs9mhnE+ENCr6Cir/6/qoSwG5eKAuyqc="; }; checkPhase = '' diff --git a/pkgs/development/python-modules/pyvesync/default.nix b/pkgs/development/python-modules/pyvesync/default.nix index c0800c3a8cc..45404c107fb 100644 --- a/pkgs/development/python-modules/pyvesync/default.nix +++ b/pkgs/development/python-modules/pyvesync/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pyvesync"; - version = "2.0.1"; + version = "2.0.2"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-7eGsRy8S6IZQ+UVNN8SoS7tBIYLlujSFr2qFldaxtJE="; + sha256 = "sha256-SsSzwuJvDbQ1AzF+q5bjOnFaR6M2UFixtlmk6sgjKOg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvicare/default.nix b/pkgs/development/python-modules/pyvicare/default.nix index bd3daf7bfb0..379481953ee 100644 --- a/pkgs/development/python-modules/pyvicare/default.nix +++ b/pkgs/development/python-modules/pyvicare/default.nix @@ -1,11 +1,11 @@ { lib , buildPythonPackage , fetchFromGitHub -, pythonOlder -, requests_oauthlib -, simplejson , pkce , pytestCheckHook +, pythonOlder +, requests-oauthlib +, simplejson }: buildPythonPackage rec { @@ -25,7 +25,7 @@ buildPythonPackage rec { SETUPTOOLS_SCM_PRETEND_VERSION = version; propagatedBuildInputs = [ - requests_oauthlib + requests-oauthlib simplejson pkce ]; diff --git a/pkgs/development/python-modules/pywavelets/default.nix b/pkgs/development/python-modules/pywavelets/default.nix index cbd7681c63f..a85a59ff4ab 100644 --- a/pkgs/development/python-modules/pywavelets/default.nix +++ b/pkgs/development/python-modules/pywavelets/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "PyWavelets"; - version = "1.2.0"; + version = "1.3.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "6cbd69b047bb4e00873097472133425f5f08a4e6bc8b3f0ae709274d4d5e9a8d"; + sha256 = "sha256-y6qdYgUtna+Np2X8jnwww46iuOnhwYhBkT37SuxnHuU="; }; checkInputs = [ nose pytest ]; diff --git a/pkgs/development/python-modules/pywayland/default.nix b/pkgs/development/python-modules/pywayland/default.nix index 5be70423390..d4fd8d28ae7 100644 --- a/pkgs/development/python-modules/pywayland/default.nix +++ b/pkgs/development/python-modules/pywayland/default.nix @@ -10,11 +10,11 @@ buildPythonPackage rec { pname = "pywayland"; - version = "0.4.11"; + version = "0.4.12"; src = fetchPypi { inherit pname version; - sha256 = "coUNrPcHLBDamgKiZ08ysg2maQ2wLRSijfNRblKMIZk="; + sha256 = "sha256-IAwBzV+wvQYgoJK1+GjAHm2aXWE2iVaMV2cduMtCkx8="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/pywlroots/default.nix b/pkgs/development/python-modules/pywlroots/default.nix index e6c64cc33e3..fdae8fdc104 100644 --- a/pkgs/development/python-modules/pywlroots/default.nix +++ b/pkgs/development/python-modules/pywlroots/default.nix @@ -7,6 +7,7 @@ , libxkbcommon , libinput , pixman +, pythonOlder , udev , wlroots , wayland @@ -18,11 +19,14 @@ buildPythonPackage rec { pname = "pywlroots"; - version = "0.15.12"; + version = "0.15.13"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-4uS47SJelkeBkqBcA6xzcTQqAXXSgcVJIZErVdR9ELY="; + sha256 = "teZ8udox+4NefgA73gD5d6hPur/zjCapoMYPW36ax0s="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix index 4cf9bd022da..f9eecbe23a8 100644 --- a/pkgs/development/python-modules/qtconsole/default.nix +++ b/pkgs/development/python-modules/qtconsole/default.nix @@ -15,11 +15,11 @@ buildPythonPackage rec { pname = "qtconsole"; - version = "5.2.2"; + version = "5.3.0"; src = fetchPypi { inherit pname version; - sha256 = "8f9db97b27782184efd0a0f2d57ea3bd852d053747a2e442a9011329c082976d"; + sha256 = "sha256-jjUg/cdeRqvEzGz/7KFvomUnVBCbiug5+ijifR66ViU="; }; checkInputs = [ nose ] ++ lib.optionals isPy27 [mock]; diff --git a/pkgs/development/python-modules/radio_beam/default.nix b/pkgs/development/python-modules/radio_beam/default.nix index 1fcf778a58c..bcb09988769 100644 --- a/pkgs/development/python-modules/radio_beam/default.nix +++ b/pkgs/development/python-modules/radio_beam/default.nix @@ -3,14 +3,17 @@ , buildPythonPackage , setuptools-scm , astropy +, numpy +, scipy +, six , pytestCheckHook , pytest-doctestplus -, scipy }: buildPythonPackage rec { pname = "radio_beam"; version = "0.3.3"; + format = "pyproject"; src = fetchPypi { inherit version; @@ -22,9 +25,17 @@ buildPythonPackage rec { setuptools-scm ]; - propagatedBuildInputs = [ astropy ]; + propagatedBuildInputs = [ + astropy + numpy + scipy + six + ]; - checkInputs = [ pytestCheckHook pytest-doctestplus scipy ]; + checkInputs = [ + pytestCheckHook + pytest-doctestplus + ]; # Tests must be run in the build directory preCheck = '' diff --git a/pkgs/development/python-modules/rapidfuzz-capi/default.nix b/pkgs/development/python-modules/rapidfuzz-capi/default.nix new file mode 100644 index 00000000000..b0235f1eda4 --- /dev/null +++ b/pkgs/development/python-modules/rapidfuzz-capi/default.nix @@ -0,0 +1,28 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +}: + +buildPythonPackage rec { + pname = "rapidfuzz-capi"; + version = "1.0.5"; + + src = fetchFromGitHub { + owner = "maxbachmann"; + repo = "rapidfuzz_capi"; + rev = "v${version}"; + hash = "sha256-0IvJl2JU/k1WbGPWRoucVGbVsEFNPHZT1ozEQAKQnPk="; + }; + + # upstream has no tests + doCheck = false; + + pythonImportsCheck = [ "rapidfuzz_capi" ]; + + meta = with lib; { + description = "C-API of RapidFuzz, which can be used to extend RapidFuzz from separate packages"; + homepage = "https://github.com/maxbachmann/rapidfuzz_capi"; + license = licenses.mit; + maintainers = with maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/rapidfuzz/default.nix b/pkgs/development/python-modules/rapidfuzz/default.nix index 19ee86e93ab..0ce27eccd0e 100644 --- a/pkgs/development/python-modules/rapidfuzz/default.nix +++ b/pkgs/development/python-modules/rapidfuzz/default.nix @@ -2,39 +2,55 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub -, pytestCheckHook +, cmake +, cython_3 +, rapidfuzz-capi +, scikit-build +, jarowinkler +, numpy , hypothesis , pandas -, numpy +, pytestCheckHook }: buildPythonPackage rec { pname = "rapidfuzz"; - version = "1.9.1"; + version = "2.0.8"; - disabled = pythonOlder "3.5"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "maxbachmann"; repo = "RapidFuzz"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "sha256-aZqsQHrxmPqZARkqR1hWaj7XndOlCJjmWk1Cosx4skA="; + hash = "sha256-LA4UpP3jFcVZTYKuq8aBvfGgEhyOLeCUsUXEgSnwb94="; }; + nativeBuildInputs = [ + cmake + cython_3 + rapidfuzz-capi + scikit-build + ]; + + dontUseCmakeConfigure = true; + propagatedBuildInputs = [ + jarowinkler numpy ]; checkInputs = [ - pytestCheckHook hypothesis pandas + pytestCheckHook ]; - disabledTests = [ - "test_levenshtein_block" # hypothesis data generation too slow - ]; + preCheck = '' + # import from $out + rm -r rapidfuzz + ''; pythonImportsCheck = [ "rapidfuzz.fuzz" diff --git a/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix b/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix index 74f1c05a201..b71a675f6d8 100644 --- a/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix +++ b/pkgs/development/python-modules/readthedocs-sphinx-ext/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "readthedocs-sphinx-ext"; - version = "2.1.4"; + version = "2.1.5"; src = fetchPypi { inherit pname version; - sha256 = "2ba023376057c6ba5d07b4fd016ec1d526f1b4fc5ad7a7ce7f0ed8a91dc54bbe"; + sha256 = "sha256-G/QuIOW3qUOJGnmM5cy5H9W6wiMLDBmdhTgMkhAHa3g="; }; propagatedBuildInputs = [ requests ]; diff --git a/pkgs/development/python-modules/redis/default.nix b/pkgs/development/python-modules/redis/default.nix index 7cd59a5528a..b38975c9c6d 100644 --- a/pkgs/development/python-modules/redis/default.nix +++ b/pkgs/development/python-modules/redis/default.nix @@ -4,36 +4,53 @@ , pythonOlder # propagates -, cryptography +, async-timeout , deprecated -, hiredis , importlib-metadata , packaging +, typing-extensions + +# extras: hiredis +, hiredis + +# extras: ocsp +, cryptography +, pyopenssl , requests }: buildPythonPackage rec { pname = "redis"; - version = "4.1.4"; + version = "4.2.1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-HZoM34n92T+EJhcz4k9Vp7vUE6myGf2vVuPnKMqaIwY="; + sha256 = "sha256-/kVROIEinb7mEGILnggXsfSMR7pjWHAyD9RKcSIEu90="; }; propagatedBuildInputs = [ - cryptography + async-timeout deprecated - hiredis packaging - requests + typing-extensions ] ++ lib.optionals (pythonOlder "3.8") [ importlib-metadata ]; + passthru.extras-require = { + hidredis = [ + hiredis + ]; + ocsp = [ + cryptography + pyopenssl + requests + ]; + }; + pythonImportsCheck = [ "redis" "redis.client" diff --git a/pkgs/development/python-modules/reedsolo/default.nix b/pkgs/development/python-modules/reedsolo/default.nix index d9dd54e29f4..44e2c3b9b44 100644 --- a/pkgs/development/python-modules/reedsolo/default.nix +++ b/pkgs/development/python-modules/reedsolo/default.nix @@ -1,4 +1,10 @@ -{ lib, buildPythonPackage, fetchFromGitHub, cython, nose }: +{ lib +, buildPythonPackage +, fetchpatch +, fetchFromGitHub +, cython +, nose +}: buildPythonPackage rec { pname = "reedsolo"; @@ -8,11 +14,18 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "tomerfiliba"; repo = "reedsolomon"; - # https://github.com/tomerfiliba/reedsolomon/issues/28 - rev = "73926cdf81b39009bd6e46c8d49f3bbc0eaad4e4"; - sha256 = "03wrr0c32dsl7h9k794b8fwnyzklvmxgriy49mjvvd3val829cc1"; + rev = "v${version}"; + hash = "sha256-GUMdL5HclXxqMYasq9kUE7fCqOkjr1D20wjd/E+xPBk="; }; + patches = [ + (fetchpatch { + # python3.10 compat; https://github.com/tomerfiliba/reedsolomon/pull/38 + url = "https://github.com/tomerfiliba/reedsolomon/commit/63e5bd9fc3ca503990c212eb2c77c10589e6d6c3.patch"; + hash = "sha256-47g+jUsJEAyqGnlzRA1oSyc2XFPUOfH0EW+vcOJzsxI="; + }) + ]; + nativeBuildInputs = [ cython ]; checkInputs = [ nose ]; diff --git a/pkgs/development/python-modules/reportlab/default.nix b/pkgs/development/python-modules/reportlab/default.nix index 629f8d0ec75..35289d3b5d4 100644 --- a/pkgs/development/python-modules/reportlab/default.nix +++ b/pkgs/development/python-modules/reportlab/default.nix @@ -1,4 +1,5 @@ -{ buildPythonPackage +{ lib +, buildPythonPackage , fetchPypi , freetype , pillow @@ -11,11 +12,11 @@ let ft = freetype.overrideAttrs (oldArgs: { dontDisableStatic = true; }); in buildPythonPackage rec { pname = "reportlab"; - version = "3.6.8"; + version = "3.6.9"; src = fetchPypi { inherit pname version; - sha256 = "sha256-3HZX/LC8PkhcPIaaRN3bUtcRNWoBpFZmS3vvgnIiyYI="; + sha256 = "sha256-XQzDaCRWrSExUPbb/+fUfqtzfYCeUXwxYQM3a+VI+4Q="; }; checkInputs = [ glibcLocales ]; @@ -23,6 +24,9 @@ in buildPythonPackage rec { buildInputs = [ ft pillow ]; postPatch = '' + substituteInPlace setup.py \ + --replace "mif = findFile(d,'ft2build.h')" "mif = findFile('${lib.getDev ft}','ft2build.h')" + # Remove all the test files that require access to the internet to pass. rm tests/test_lib_utils.py rm tests/test_platypus_general.py diff --git a/pkgs/development/python-modules/requests/default.nix b/pkgs/development/python-modules/requests/default.nix index 86b2c2ffc39..559ce70533c 100644 --- a/pkgs/development/python-modules/requests/default.nix +++ b/pkgs/development/python-modules/requests/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , brotli , brotlicffi , buildPythonPackage @@ -30,21 +31,15 @@ buildPythonPackage rec { ./0001-Prefer-NixOS-Nix-default-CA-bundles-over-certifi.patch ]; - postPatch = '' - # Use latest idna - substituteInPlace setup.py \ - --replace ",<3" "" - ''; - propagatedBuildInputs = [ certifi idna urllib3 chardet - ] ++ lib.optionals (isPy3k) [ + ] ++ lib.optionals isPy3k [ brotlicffi charset-normalizer - ] ++ lib.optionals (isPy27) [ + ] ++ lib.optionals isPy27 [ brotli ]; @@ -72,6 +67,15 @@ buildPythonPackage rec { "test_use_proxy_from_environment" "TestRequests" "TestTimeout" + ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + # Fatal Python error: Aborted + "test_basic_response" + "test_text_response" + ]; + + disabledTestPaths = lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + # Fatal Python error: Aborted + "tests/test_lowlevel.py" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/responses/default.nix b/pkgs/development/python-modules/responses/default.nix index 95861bda181..7f9372dcdb7 100644 --- a/pkgs/development/python-modules/responses/default.nix +++ b/pkgs/development/python-modules/responses/default.nix @@ -1,6 +1,6 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , pytest-localserver , pytestCheckHook , pythonOlder @@ -10,14 +10,16 @@ buildPythonPackage rec { pname = "responses"; - version = "0.18.0"; + version = "0.20.0"; format = "setuptools"; disabled = pythonOlder "3.7"; - src = fetchPypi { - inherit pname version; - hash = "sha256-OAytTBwdyULl6KjqrgtNTt9wj08BDbi3vPr60fzSVP8="; + src = fetchFromGitHub { + owner = "getsentry"; + repo = pname; + rev = version; + hash = "sha256-dhIKMQXBJfZGIanJN1bFmlr/FYL1UYgYKGYaSznKhZs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rich/default.nix b/pkgs/development/python-modules/rich/default.nix index 3e7055d274e..addc12b3637 100644 --- a/pkgs/development/python-modules/rich/default.nix +++ b/pkgs/development/python-modules/rich/default.nix @@ -3,7 +3,6 @@ , fetchFromGitHub , pythonOlder , CommonMark -, colorama , dataclasses , poetry-core , pygments @@ -13,7 +12,7 @@ buildPythonPackage rec { pname = "rich"; - version = "11.2.0"; + version = "12.2.0"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -21,18 +20,18 @@ buildPythonPackage rec { owner = "Textualize"; repo = pname; rev = "v${version}"; - sha256 = "19k8c8jnqj1v0ji8kkx3r2ny6wlpwy58ir7lyrh2qyjvzkw08i58"; + sha256 = "02zypmnc9sijlipki0riywh82piamd3hlrl5xbg2bxlldnlnwx1d"; }; nativeBuildInputs = [ poetry-core ]; propagatedBuildInputs = [ CommonMark - colorama pygments - typing-extensions ] ++ lib.optional (pythonOlder "3.7") [ dataclasses + ] ++ lib.optional (pythonOlder "3.9") [ + typing-extensions ]; checkInputs = [ diff --git a/pkgs/development/python-modules/ring-doorbell/default.nix b/pkgs/development/python-modules/ring-doorbell/default.nix index 968182f8535..bffa6fed7d1 100644 --- a/pkgs/development/python-modules/ring-doorbell/default.nix +++ b/pkgs/development/python-modules/ring-doorbell/default.nix @@ -1,31 +1,33 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k , oauthlib , pytestCheckHook +, pythonOlder , pytz , requests , requests-mock -, requests_oauthlib +, requests-oauthlib }: buildPythonPackage rec { pname = "ring-doorbell"; version = "0.7.2"; - disabled = !isPy3k; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { pname = "ring_doorbell"; inherit version; - sha256 = "0a7e82abf27086843eb39c0279f5dfccea6751ff848560e67154ca6fbfa4ef2b"; + hash = "sha256-Cn6Cq/JwhoQ+s5wCefXfzOpnUf+EhWDmcVTKb7+k7ys="; }; propagatedBuildInputs = [ oauthlib pytz requests - requests_oauthlib + requests-oauthlib ]; checkInputs = [ @@ -33,11 +35,13 @@ buildPythonPackage rec { requests-mock ]; - pythonImportsCheck = [ "ring_doorbell" ]; + pythonImportsCheck = [ + "ring_doorbell" + ]; meta = with lib; { + description = "Python library to communicate with Ring Door Bell"; homepage = "https://github.com/tchellomello/python-ring-doorbell"; - description = "A Python library to communicate with Ring Door Bell (https://ring.com/)"; license = licenses.lgpl3Plus; maintainers = with maintainers; [ graham33 ]; }; diff --git a/pkgs/development/python-modules/robotframework-tools/default.nix b/pkgs/development/python-modules/robotframework-tools/default.nix index 77a7fe13df9..2c2fe3945b0 100644 --- a/pkgs/development/python-modules/robotframework-tools/default.nix +++ b/pkgs/development/python-modules/robotframework-tools/default.nix @@ -3,7 +3,7 @@ , fetchPypi , robotframework , moretools -, pathpy +, path , six , zetup , modeled @@ -24,7 +24,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ robotframework moretools - pathpy + path six modeled ]; diff --git a/pkgs/development/python-modules/sagemaker/default.nix b/pkgs/development/python-modules/sagemaker/default.nix index d18d939be60..dff960429fb 100644 --- a/pkgs/development/python-modules/sagemaker/default.nix +++ b/pkgs/development/python-modules/sagemaker/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "sagemaker"; - version = "2.77.1"; + version = "2.82.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-RX3QcjGDWYaPC9lKz/nJSMTO3jeXxY7MW98fHYfcLq0="; + sha256 = "sha256-cQe4b5XpmaC9ZTanI9LKNTLw1HycxqaDCOuLfw/vBRY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sanic/default.nix b/pkgs/development/python-modules/sanic/default.nix index 460927719ad..91d8c564315 100644 --- a/pkgs/development/python-modules/sanic/default.nix +++ b/pkgs/development/python-modules/sanic/default.nix @@ -123,6 +123,8 @@ buildPythonPackage rec { "test_version" # Sensitive comparison of raw HTTP header fails "test_raw_headers" + # noisy_exceptions sometimes missing from sanic stdout + "test_noisy_exceptions" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/sapi-python-client/default.nix b/pkgs/development/python-modules/sapi-python-client/default.nix deleted file mode 100644 index 8375c62e979..00000000000 --- a/pkgs/development/python-modules/sapi-python-client/default.nix +++ /dev/null @@ -1,30 +0,0 @@ -{ lib, git, setuptools, setuptools-scm, fetchFromGitHub, requests, boto3, buildPythonPackage, responses }: - -buildPythonPackage rec { - pname = "sapi-python-client"; - version = "0.4.1"; - - src = fetchFromGitHub { - owner = "keboola"; - repo = pname; - rev = version; - sha256 = "189dzj06vzp7366h2qsfvbjmw9qgl7jbp8syhynn9yvrjqp4k8h3"; - }; - - postPatch = '' - sed -i 's|use_scm_version=True|version="${version}"|' setup.py - ''; - - doCheck = false; # requires API token and an active keboola bucket - - nativeBuildInputs = [ git setuptools-scm ]; - - propagatedBuildInputs = [ setuptools requests boto3 responses ]; - - meta = with lib; { - description = "Keboola Connection Storage API client"; - homepage = "https://github.com/keboola/sapi-python-client"; - maintainers = with maintainers; [ mrmebelman ]; - license = licenses.mit; - }; -} diff --git a/pkgs/development/python-modules/schema-salad/default.nix b/pkgs/development/python-modules/schema-salad/default.nix index f7be7f0107c..995c7e206fa 100644 --- a/pkgs/development/python-modules/schema-salad/default.nix +++ b/pkgs/development/python-modules/schema-salad/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { version = "8.2.20220204150214"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-PlPb/nE3eWueUTWSDpa7JxPe2ee+KFna5VTR3IsClwQ="; + hash = "sha256-PlPb/nE3eWueUTWSDpa7JxPe2ee+KFna5VTR3IsClwQ="; }; propagatedBuildInputs = [ @@ -37,9 +37,11 @@ buildPythonPackage rec { ]; disabledTests = [ - # setup for these tests requires network access + # Setup for these tests requires network access "test_secondaryFiles" "test_outputBinding" + # Test requires network + "test_yaml_tab_error" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/scikit-build/default.nix b/pkgs/development/python-modules/scikit-build/default.nix index 3fefba47cbd..17b2ac35567 100644 --- a/pkgs/development/python-modules/scikit-build/default.nix +++ b/pkgs/development/python-modules/scikit-build/default.nix @@ -1,22 +1,21 @@ { lib , buildPythonPackage , fetchPypi +, fetchpatch , distro , packaging +, python , setuptools +, setuptools-scm , wheel -# Test Inputs + # Test Inputs , cmake -, codecov -, coverage , cython , flake8 , ninja -, pathpy -, pytest -, pytest-cov +, path +, pytestCheckHook , pytest-mock -, pytest-runner , pytest-virtualenv , requests , six @@ -25,31 +24,36 @@ buildPythonPackage rec { pname = "scikit-build"; - version = "0.13.1"; + version = "0.14.1"; + format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-XRd0ousVmI4IHFgsJUq0qXUgluajTyNUEct5vWFmDDc="; + sha256 = "sha256-Fwc9g3tWVRvt6Pa++utOuj2UM15ZAjmELjZg8HY6CRo="; }; + patches = [ + (fetchpatch { + url = "https://github.com/scikit-build/scikit-build/commit/59cf7a5b09a71d418947db3c9d487471c4573a24.patch"; + sha256 = "sha256-oQllX3qzwWwllczXUMObrwndCfvMdS5FulEhbBORAks="; + }) + ]; + propagatedBuildInputs = [ distro packaging setuptools + setuptools-scm wheel ]; + checkInputs = [ cmake - codecov - coverage cython - flake8 ninja - pathpy - pytest - pytest-cov + path + pytestCheckHook pytest-mock - pytest-runner pytest-virtualenv requests six @@ -58,7 +62,7 @@ buildPythonPackage rec { dontUseCmakeConfigure = true; - disabledTests = lib.concatMapStringsSep " and " (s: "not " + s) ([ + disabledTests = [ "test_hello_develop" # tries setuptools develop install "test_source_distribution" # pip has no way to install missing dependencies "test_wheel" # pip has no way to install missing dependencies @@ -68,15 +72,21 @@ buildPythonPackage rec { "test_setup" # tries to install using distutils "test_pep518" # pip exits with code 1 "test_dual_pep518" # pip exits with code 1 - ]); - - checkPhase = '' - py.test -k '${disabledTests}' - ''; + "test_isolated_env_trigger_reconfigure" # Regex pattern 'exit skbuild saving cmake spec' does not match 'exit skbuild running make'. + "test_hello_wheel" # [Errno 2] No such file or directory: '_skbuild/linux-x86_64-3.9/setuptools/bdist.linux-x86_64/wheel/helloModule.py' + # sdist contents differ, contains additional setup.py + "test_hello_sdist" + "test_manifest_in_sdist" + "test_sdist_with_symlinks" + # distutils.errors.DistutilsArgError: no commands supplied + "test_invalid_command" + "test_manifest_in_sdist" + "test_no_command" + ]; meta = with lib; { description = "Improved build system generator for CPython C/C++/Fortran/Cython extensions"; - homepage = "http://scikit-build.org/"; + homepage = "https://github.com/scikit-build/scikit-build"; license = with licenses; [ mit bsd2 ]; # BSD due to reuses of PyNE code maintainers = with maintainers; [ FlorianFranzen ]; }; diff --git a/pkgs/development/python-modules/scikit-learn/default.nix b/pkgs/development/python-modules/scikit-learn/default.nix index 7e2096c9b9b..82a85d70941 100644 --- a/pkgs/development/python-modules/scikit-learn/default.nix +++ b/pkgs/development/python-modules/scikit-learn/default.nix @@ -78,8 +78,6 @@ buildPythonPackage rec { # https://github.com/scikit-learn/scikit-learn/issues/17582 # Since we are overriding '-k' we need to include the 'disabledTests' from above manually. "-k" "'not (NuSVC and memmap) ${toString (lib.forEach disabledTests (t: "and not ${t}"))}'" - - "-n" "$NIX_BUILD_CORES" ]; preCheck = '' diff --git a/pkgs/development/python-modules/sendgrid/default.nix b/pkgs/development/python-modules/sendgrid/default.nix index aab6ab049da..8462b9924ed 100644 --- a/pkgs/development/python-modules/sendgrid/default.nix +++ b/pkgs/development/python-modules/sendgrid/default.nix @@ -7,6 +7,7 @@ , pythonOlder , pyyaml , starkbank-ecdsa +, six , werkzeug }: @@ -27,6 +28,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ python-http-client starkbank-ecdsa + six ]; checkInputs = [ diff --git a/pkgs/development/python-modules/service_identity/default.nix b/pkgs/development/python-modules/service_identity/default.nix index d7c37e7c433..8ac3b52d58c 100644 --- a/pkgs/development/python-modules/service_identity/default.nix +++ b/pkgs/development/python-modules/service_identity/default.nix @@ -7,6 +7,7 @@ , ipaddress , pyasn1 , pyasn1-modules +, six , pytestCheckHook , pythonOlder }: @@ -28,6 +29,7 @@ buildPythonPackage rec { idna pyasn1 pyasn1-modules + six ] ++ lib.optionals (pythonOlder "3.3") [ ipaddress ]; diff --git a/pkgs/development/python-modules/setupmeta/default.nix b/pkgs/development/python-modules/setupmeta/default.nix index c42565082cf..d24c8263e9a 100644 --- a/pkgs/development/python-modules/setupmeta/default.nix +++ b/pkgs/development/python-modules/setupmeta/default.nix @@ -7,6 +7,7 @@ , pytestCheckHook , pythonOlder , setuptools-scm +, six }: buildPythonPackage rec { @@ -36,6 +37,7 @@ buildPythonPackage rec { mock pep440 pytestCheckHook + six ]; preCheck = '' @@ -45,6 +47,7 @@ buildPythonPackage rec { disabledTests = [ # Tests want to scan site-packages "test_check_dependencies" + "test_clean" "test_scenario" "test_git_versioning" ]; diff --git a/pkgs/development/python-modules/setuptools-rust/default.nix b/pkgs/development/python-modules/setuptools-rust/default.nix index 2ab609c7d0c..24c60839fe0 100644 --- a/pkgs/development/python-modules/setuptools-rust/default.nix +++ b/pkgs/development/python-modules/setuptools-rust/default.nix @@ -12,17 +12,17 @@ buildPythonPackage rec { pname = "setuptools-rust"; - version = "1.1.2"; + version = "1.2.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "a0adb9b503c0ffc4e8fe80b7c617898cefa78049983aaaea7f747e153a3e65d1"; + sha256 = "sha256-CkraR56Mfj2L18tW4aKazCsruYwjJQUbDNy1fX8Fbeg="; }; nativeBuildInputs = [ setuptools-scm ]; - propagatedBuildInputs = [ semantic-version setuptools toml typing-extensions ]; + propagatedBuildInputs = [ semantic-version setuptools typing-extensions ]; doCheck = false; pythonImportsCheck = [ "setuptools_rust" ]; diff --git a/pkgs/development/python-modules/setuptools/default.nix b/pkgs/development/python-modules/setuptools/default.nix index 6b18422cc18..1d9592022d1 100644 --- a/pkgs/development/python-modules/setuptools/default.nix +++ b/pkgs/development/python-modules/setuptools/default.nix @@ -10,7 +10,7 @@ let pname = "setuptools"; - version = "60.8.2"; + version = "61.2.0"; # Create an sdist of setuptools sdist = stdenv.mkDerivation rec { @@ -20,7 +20,7 @@ let owner = "pypa"; repo = pname; rev = "v${version}"; - sha256 = "1mqpmbn58rx3g24dm6wnllx0xs97ampn2yga3qypqgwnh1nk477i"; + hash = "sha256-Cgz3uA8U7A1lOZNuj1EYZVViZ3aL6VjcAno8GYQUufk="; name = "${pname}-${version}-source"; }; diff --git a/pkgs/development/python-modules/setuptools/setuptools-distutils-C++.patch b/pkgs/development/python-modules/setuptools/setuptools-distutils-C++.patch index a14e514fda7..43601d8b6eb 100644 --- a/pkgs/development/python-modules/setuptools/setuptools-distutils-C++.patch +++ b/pkgs/development/python-modules/setuptools/setuptools-distutils-C++.patch @@ -1,6 +1,3 @@ -Based on pkgs/development/interpreters/python/cpython/3.7/python-3.x-distutils-C++.patch, -adapted to apply to setuptools 60.x's bundled distutils. - diff --git a/setuptools/_distutils/cygwinccompiler.py b/setuptools/_distutils/cygwinccompiler.py index c5c86d8f..b879e447 100644 --- a/setuptools/_distutils/cygwinccompiler.py @@ -57,7 +54,7 @@ index c5c86d8f..b879e447 100644 # Maybe we should also append -mthreads, but then the finished # dlls need another dll (mingwm10.dll see Mingw32 docs) diff --git a/setuptools/_distutils/sysconfig.py b/setuptools/_distutils/sysconfig.py -index 4a77a431..1ad85181 100644 +index 9fad3835..889e2595 100644 --- a/setuptools/_distutils/sysconfig.py +++ b/setuptools/_distutils/sysconfig.py @@ -216,9 +216,11 @@ def customize_compiler(compiler): @@ -124,10 +121,10 @@ index 4a77a431..1ad85181 100644 if 'RANLIB' in os.environ and compiler.executables.get('ranlib', None): diff --git a/setuptools/_distutils/unixccompiler.py b/setuptools/_distutils/unixccompiler.py -index a07e5988..576ef490 100644 +index 715408f5..6125a1eb 100644 --- a/setuptools/_distutils/unixccompiler.py +++ b/setuptools/_distutils/unixccompiler.py -@@ -52,14 +52,17 @@ class UnixCCompiler(CCompiler): +@@ -110,14 +110,17 @@ class UnixCCompiler(CCompiler): # are pretty generic; they will probably have to be set by an outsider # (eg. using information discovered by the sysconfig about building # Python extensions). @@ -153,21 +150,17 @@ index a07e5988..576ef490 100644 } if sys.platform[:6] == "darwin": -@@ -110,12 +113,19 @@ class UnixCCompiler(CCompiler): - +@@ -169,9 +172,15 @@ class UnixCCompiler(CCompiler): def _compile(self, obj, src, ext, cc_args, extra_postargs, pp_opts): - compiler_so = self.compiler_so -+ compiler_so_cxx = self.compiler_so_cxx - if sys.platform == 'darwin': - compiler_so = _osx_support.compiler_fixup(compiler_so, - cc_args + extra_postargs) -+ compiler_so_cxx = _osx_support.compiler_fixup(compiler_so_cxx, -+ cc_args + extra_postargs) + compiler_so = compiler_fixup( + self.compiler_so, cc_args + extra_postargs) ++ compiler_so_cxx = compiler_fixup( ++ self.compiler_so_cxx, cc_args + extra_postargs) try: - self.spawn(compiler_so + cc_args + [src, '-o', obj] + - extra_postargs) + if self.detect_language(src) == 'c++': -+ self.spawn(compiler_so_cxx + cc_args + [src, '-o', obj] + ++ self.spawn(compiler_so_cxx + cc_args + [ src, '-o', obj] + + extra_postargs) + else: + self.spawn(compiler_so + cc_args + [src, '-o', obj] + @@ -175,42 +168,13 @@ index a07e5988..576ef490 100644 except DistutilsExecError as msg: raise CompileError(msg) -@@ -173,30 +183,16 @@ class UnixCCompiler(CCompiler): - ld_args.extend(extra_postargs) - self.mkpath(os.path.dirname(output_filename)) - try: -- if target_desc == CCompiler.EXECUTABLE: -- linker = self.linker_exe[:] -+ if target_lang == "c++": -+ if target_desc == CCompiler.EXECUTABLE: -+ linker = self.linker_exe_cxx[:] -+ else: -+ linker = self.linker_so_cxx[:] - else: -- linker = self.linker_so[:] -- if target_lang == "c++" and self.compiler_cxx: -- # skip over environment variable settings if /usr/bin/env -- # is used to set up the linker's environment. -- # This is needed on OSX. Note: this assumes that the -- # normal and C++ compiler have the same environment -- # settings. -- i = 0 -- if os.path.basename(linker[0]) == "env": -- i = 1 -- while '=' in linker[i]: -- i += 1 -- -- if os.path.basename(linker[i]) == 'ld_so_aix': -- # AIX platforms prefix the compiler with the ld_so_aix -- # script, so we need to adjust our linker index -- offset = 1 -+ if target_desc == CCompiler.EXECUTABLE: -+ linker = self.linker_exe[:] - else: -- offset = 0 -- -- linker[i+offset] = self.compiler_cxx[i] -+ linker = self.linker_so[:] +@@ -233,7 +242,8 @@ class UnixCCompiler(CCompiler): + # building an executable or linker_so (with shared options) + # when building a shared library. + building_exe = target_desc == CCompiler.EXECUTABLE +- linker = (self.linker_exe if building_exe else self.linker_so)[:] ++ linker = (self.linker_exe if building_exe else (self.linker_so_cxx if ++ target_lang == "c++" else self.linker_so))[:] - if sys.platform == 'darwin': - linker = _osx_support.compiler_fixup(linker, ld_args) + if target_lang == "c++" and self.compiler_cxx: + env, linker_ne = _split_env(linker) diff --git a/pkgs/development/python-modules/shapely/default.nix b/pkgs/development/python-modules/shapely/default.nix index 818cce6a567..8d5d0d2aa4f 100644 --- a/pkgs/development/python-modules/shapely/default.nix +++ b/pkgs/development/python-modules/shapely/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "Shapely"; - version = "1.8.0"; + version = "1.8.1.post1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "177g8wxsgnphhhn4634n6ca1qrk462ijqlznpj5ry6d49ghpwc7m"; + sha256 = "sha256-k/8G/wX74r6EO5PHsa2CkuVuZlugG0cI91rop1eXLp8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/shapely/library-paths.patch b/pkgs/development/python-modules/shapely/library-paths.patch index d55630be9c1..484af67ef68 100644 --- a/pkgs/development/python-modules/shapely/library-paths.patch +++ b/pkgs/development/python-modules/shapely/library-paths.patch @@ -1,8 +1,8 @@ diff --git a/shapely/geos.py b/shapely/geos.py -index 4619732..1abdb5e 100644 +index 13ab835..1abdb5e 100644 --- a/shapely/geos.py +++ b/shapely/geos.py -@@ -55,148 +55,21 @@ def load_dll(libname, fallbacks=None, mode=DEFAULT_MODE): +@@ -55,174 +55,21 @@ def load_dll(libname, fallbacks=None, mode=DEFAULT_MODE): "Could not find lib {} or load any of its variants {}.".format( libname, fallbacks or [])) @@ -61,16 +61,23 @@ index 4619732..1abdb5e 100644 - -elif sys.platform == 'darwin': - # Test to see if we have a delocated wheel with a GEOS dylib. -- geos_whl_dylib = os.path.abspath(os.path.join(os.path.dirname( -- __file__), '.dylibs/libgeos_c.1.dylib')) +- dylib_path = os.path.abspath( +- os.path.join(os.path.dirname(__file__), ".dylibs/*.dylib") +- ) +- LOG.debug("Formed path for globbing: dylib_path=%r", dylib_path) +- +- geos_whl_dylib = glob.glob(dylib_path) +- LOG.debug("Globbed: geos_whl_dylib=%r", geos_whl_dylib) - -- if os.path.exists(geos_whl_dylib): +- if len(geos_whl_dylib) > 0: - handle = CDLL(None) - if hasattr(handle, "initGEOS_r"): - LOG.debug("GEOS already loaded") - _lgeos = handle - else: -- _lgeos = CDLL(geos_whl_dylib) +- geos_whl_dylib = sorted(geos_whl_dylib) +- CDLL(geos_whl_dylib[0]) +- _lgeos = CDLL(geos_whl_dylib[-1]) - LOG.debug("Found GEOS DLL: %r, using it.", _lgeos) - - elif exists_conda_env(): @@ -112,25 +119,44 @@ index 4619732..1abdb5e 100644 -elif sys.platform == 'win32': - _conda_dll_path = os.path.join(sys.prefix, 'Library', 'bin', 'geos_c.dll') - if exists_conda_env() and os.path.exists(_conda_dll_path): -- # conda package. - _lgeos = CDLL(_conda_dll_path) - else: -- try: -- egg_dlls = os.path.abspath( -- os.path.join(os.path.dirname(__file__), 'DLLs')) -- if hasattr(sys, '_MEIPASS'): -- wininst_dlls = sys._MEIPASS -- elif hasattr(sys, "frozen"): -- wininst_dlls = os.path.normpath( -- os.path.abspath(sys.executable + '../../DLLS')) -- else: -- wininst_dlls = os.path.abspath(os.__file__ + "../../../DLLs") -- original_path = os.environ['PATH'] -- os.environ['PATH'] = "%s;%s;%s" % \ -- (egg_dlls, wininst_dlls, original_path) -- _lgeos = load_dll("geos_c.dll") -- except (ImportError, WindowsError, OSError): -- raise +- geos_whl_dll = glob.glob( +- os.path.abspath( +- os.path.join( +- os.path.dirname(__file__), "..", "Shapely.libs", "geos*.dll" +- ) +- ) +- ) +- +- if len(geos_whl_dll) > 0: +- geos_whl_dll = sorted(geos_whl_dll) +- # CDLL(geos_whl_so[0]) +- _lgeos = CDLL(geos_whl_dll[-1]) +- LOG.debug("Found GEOS DLL: %r, using it.", _lgeos) +- else: +- try: +- egg_dlls = os.path.abspath( +- os.path.join(os.path.dirname(__file__), "DLLs") +- ) +- if hasattr(sys, "_MEIPASS"): +- wininst_dlls = sys._MEIPASS +- elif hasattr(sys, "frozen"): +- wininst_dlls = os.path.normpath( +- os.path.abspath(sys.executable + "../../DLLS") +- ) +- else: +- wininst_dlls = os.path.abspath(os.__file__ + "../../../DLLs") +- original_path = os.environ["PATH"] +- os.environ["PATH"] = "%s;%s;%s" % ( +- egg_dlls, +- wininst_dlls, +- original_path, +- ) +- _lgeos = load_dll("geos_c.dll") +- +- except (ImportError, WindowsError, OSError): +- raise - - def free(m): - try: diff --git a/pkgs/development/python-modules/shtab/default.nix b/pkgs/development/python-modules/shtab/default.nix index 78e160058b2..4051378d068 100644 --- a/pkgs/development/python-modules/shtab/default.nix +++ b/pkgs/development/python-modules/shtab/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "shtab"; - version = "1.5.3"; + version = "1.5.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "iterative"; repo = pname; rev = "v${version}"; - hash = "sha256-Wuc4m3VdOGEcevYXUpbL4gTvyW9t13pj57zPYdqx0UY="; + hash = "sha256-MYLAQSz55913fOhRnH+Y9xugOdfO43gkavitazIgeqg="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/social-auth-core/default.nix b/pkgs/development/python-modules/social-auth-core/default.nix index ede138218e0..667c4ec4245 100644 --- a/pkgs/development/python-modules/social-auth-core/default.nix +++ b/pkgs/development/python-modules/social-auth-core/default.nix @@ -3,7 +3,7 @@ , fetchFromGitHub , requests , oauthlib -, requests_oauthlib +, requests-oauthlib , pyjwt , cryptography , defusedxml @@ -38,7 +38,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ requests oauthlib - requests_oauthlib + requests-oauthlib pyjwt cryptography defusedxml diff --git a/pkgs/development/python-modules/sortedcontainers/default.nix b/pkgs/development/python-modules/sortedcontainers/default.nix index 8920336f8db..4edd68f1f07 100644 --- a/pkgs/development/python-modules/sortedcontainers/default.nix +++ b/pkgs/development/python-modules/sortedcontainers/default.nix @@ -1,24 +1,39 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub +, pytestCheckHook }: -buildPythonPackage rec { - pname = "sortedcontainers"; - version = "2.4.0"; +let + sortedcontainers = buildPythonPackage rec { + pname = "sortedcontainers"; + version = "2.4.0"; - src = fetchPypi { - inherit pname version; - sha256 = "25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88"; - }; + src = fetchFromGitHub { + owner = "grantjenks"; + repo = "python-sortedcontainers"; + rev = "v${version}"; + sha256 = "sha256-YRbSM2isWi7AzfquFvuZBlpEMNUnBJTBLBn0/XYVHKQ="; + }; + + doCheck = false; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "sortedcontainers" ]; - # pypi tarball does not come with tests - doCheck = false; + passthru.tests = { + pytest = sortedcontainers.overridePythonAttrs (_: { doCheck = true; }); + }; - meta = { - description = "Python Sorted Container Types: SortedList, SortedDict, and SortedSet"; - homepage = "http://www.grantjenks.com/docs/sortedcontainers/"; - license = lib.licenses.asl20; - maintainers = with lib.maintainers; [ costrouc ]; + meta = with lib; { + description = "Python Sorted Container Types: SortedList, SortedDict, and SortedSet"; + homepage = "https://grantjenks.com/docs/sortedcontainers/"; + license = licenses.asl20; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; }; -} +in +sortedcontainers diff --git a/pkgs/development/python-modules/spacy-transformers/default.nix b/pkgs/development/python-modules/spacy-transformers/default.nix index d203f8709c3..2a81a5bce08 100644 --- a/pkgs/development/python-modules/spacy-transformers/default.nix +++ b/pkgs/development/python-modules/spacy-transformers/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "spacy-transformers"; - version = "1.1.4"; + version = "1.1.5"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-G09bZiXTdEuukvKjPOYYTW/B19d406QSRDOU5ZflDDU="; + sha256 = "sha256-nxbmnFyHptbe5M7rQi2ECGoBpxUuutdCtY20eHsGDPI="; }; postPatch = '' diff --git a/pkgs/development/python-modules/spacy/default.nix b/pkgs/development/python-modules/spacy/default.nix index 5e3bc6aac8b..41e6a8cc37c 100644 --- a/pkgs/development/python-modules/spacy/default.nix +++ b/pkgs/development/python-modules/spacy/default.nix @@ -31,13 +31,13 @@ buildPythonPackage rec { pname = "spacy"; - version = "3.2.3"; + version = "3.2.4"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-JdAz/Ae4+/yb3Te3cLilhtxBTb1gMShEmvMldqOJFnM="; + sha256 = "sha256-PkxvKY1UBEWC2soRQrCC7jiDG7PXu5MdLuYB6Ljc5k8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sparqlwrapper/default.nix b/pkgs/development/python-modules/sparqlwrapper/default.nix index 41c11172d9b..0660b8a403c 100644 --- a/pkgs/development/python-modules/sparqlwrapper/default.nix +++ b/pkgs/development/python-modules/sparqlwrapper/default.nix @@ -1,31 +1,28 @@ { lib , buildPythonPackage , fetchPypi -, six -, isodate -, pyparsing -, html5lib , keepalive }: buildPythonPackage rec { - pname = "SPARQLWrapper"; - version = "1.8.5"; + pname = "sparqlwrapper"; + version = "2.0.0"; src = fetchPypi { - inherit pname version; - sha256 = "d6a66b5b8cda141660e07aeb00472db077a98d22cb588c973209c7336850fb3c"; + pname = "SPARQLWrapper"; + inherit version; + sha256 = "sha256-P+0+vMd2F6SnTSZEuG/Yjg8y5/cAOseyszTAJiAXMfE="; }; # break circular dependency loop patchPhase = '' - sed -i '/rdflib/d' requirements.txt + sed -i '/rdflib/d' setup.cfg ''; # Doesn't actually run tests doCheck = false; - propagatedBuildInputs = [ six isodate pyparsing html5lib keepalive ]; + propagatedBuildInputs = [ keepalive ]; meta = with lib; { description = "This is a wrapper around a SPARQL service. It helps in creating the query URI and, possibly, convert the result into a more manageable format"; diff --git a/pkgs/development/python-modules/sphinx-jinja/default.nix b/pkgs/development/python-modules/sphinx-jinja/default.nix index 7f5ea8c4241..28d57575255 100644 --- a/pkgs/development/python-modules/sphinx-jinja/default.nix +++ b/pkgs/development/python-modules/sphinx-jinja/default.nix @@ -1,29 +1,26 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27, pbr, sphinx, sphinx-testing, nose, glibcLocales }: +{ lib, buildPythonPackage, fetchPypi, pythonOlder, sphinx }: buildPythonPackage rec { pname = "sphinx-jinja"; - version = "1.4.0"; + version = "2.0.1"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "e6614d986c0289cb85b016c25eb8cb9781ceb841e70bee639c5123f39ad90b38"; + sha256 = "sha256-3lMY1InG1PaAqhIrp5kovE6t+kTTpTKS3ir+WI/+RAY="; }; - buildInputs = [ pbr ]; propagatedBuildInputs = [ sphinx ]; - checkInputs = [ sphinx-testing nose glibcLocales ]; + # upstream source is not updated to 2.0.X and pypi does not contain tests + doCheck = false; - checkPhase = lib.optionalString (!isPy27) '' - # prevent python from loading locally and breaking namespace - mv sphinxcontrib .sphinxcontrib - '' + '' - # Zip (epub) does not support files with epoch timestamp - LC_ALL="en_US.UTF-8" nosetests -e test_build_epub - ''; + pythonImportsCheck = [ "sphinx_jinja" ]; meta = with lib; { description = "Sphinx extension to include jinja templates in documentation"; + homepage = "https://github.com/tardyp/sphinx-jinja"; maintainers = with maintainers; [ ]; license = licenses.mit; }; diff --git a/pkgs/development/python-modules/sphinx/default.nix b/pkgs/development/python-modules/sphinx/default.nix index 7d79aaa457a..020cf5c143a 100644 --- a/pkgs/development/python-modules/sphinx/default.nix +++ b/pkgs/development/python-modules/sphinx/default.nix @@ -30,14 +30,16 @@ buildPythonPackage rec { pname = "sphinx"; - version = "4.4.0"; - disabled = pythonOlder "3.5"; + version = "4.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "sphinx-doc"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Q4CqPO08AfR+CDB02al65A+FHRFUDUfFTba0u8YQx+8="; + sha256 = "sha256-Lw9yZWCQpt02SL/McWPcyFRfVhQHC0TejcYRbVw+VxY="; extraPostFetch = '' cd $out mv tests/roots/test-images/testimäge.png \ @@ -46,6 +48,11 @@ buildPythonPackage rec { ''; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "docutils>=0.14,<0.18" "docutils>=0.14" + ''; + propagatedBuildInputs = [ Babel alabaster diff --git a/pkgs/development/python-modules/sphinx_rtd_theme/default.nix b/pkgs/development/python-modules/sphinx_rtd_theme/default.nix index 1d890de94f7..d0c9a3883af 100644 --- a/pkgs/development/python-modules/sphinx_rtd_theme/default.nix +++ b/pkgs/development/python-modules/sphinx_rtd_theme/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.py \ - --replace "docutils<0.17" "docutils" + --replace "docutils<0.18" "docutils" ''; preBuild = '' diff --git a/pkgs/development/python-modules/spyder-kernels/default.nix b/pkgs/development/python-modules/spyder-kernels/default.nix index 4ddacc91190..95d54e40447 100644 --- a/pkgs/development/python-modules/spyder-kernels/default.nix +++ b/pkgs/development/python-modules/spyder-kernels/default.nix @@ -3,11 +3,11 @@ buildPythonPackage rec { pname = "spyder-kernels"; - version = "2.2.1"; + version = "2.3.0"; src = fetchPypi { inherit pname version; - sha256 = "574ee1bd03f7236b9f9dacae34936a0625cd67ccfe3df11fec69f26889a0b866"; + sha256 = "sha256-pdU20Oil53TX1hbBAqj6LWqkX9MwoLeZuY7vFYNW02w="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/spyder/default.nix b/pkgs/development/python-modules/spyder/default.nix index 40e393b57d6..c117cb4990f 100644 --- a/pkgs/development/python-modules/spyder/default.nix +++ b/pkgs/development/python-modules/spyder/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "spyder"; - version = "5.2.2"; + version = "5.3.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-3DIikQlsc7Ptagi8ddR5ia+u24dXeBdppRkIn/xp3bg="; + sha256 = "sha256-ggCFvYUdUm5fVSpTZoN/OhNPJAQOyehwrQprYTzprbc="; }; nativeBuildInputs = [ pyqtwebengine.wrapQtAppsHook ]; diff --git a/pkgs/development/python-modules/sqlalchemy-imageattach/default.nix b/pkgs/development/python-modules/sqlalchemy-imageattach/default.nix deleted file mode 100644 index 55026b2b553..00000000000 --- a/pkgs/development/python-modules/sqlalchemy-imageattach/default.nix +++ /dev/null @@ -1,42 +0,0 @@ -{ lib -, buildPythonPackage -, pytest -, Wand -, webob -, sqlalchemy -, isPyPy -, pkgs -}: - -buildPythonPackage rec { - pname = "SQLAlchemy-ImageAttach"; - version = "1.0.0"; - - src = pkgs.fetchFromGitHub { - repo = "sqlalchemy-imageattach"; - owner = "dahlia"; - rev = version; - sha256 = "0ba97pn5dh00qvxyjbr0mr3pilxqw5kb3a6jd4wwbsfcv6nngqig"; - }; - - checkInputs = [ pytest Wand.imagemagick webob ]; - propagatedBuildInputs = [ sqlalchemy Wand ]; - - checkPhase = '' - cd tests - export MAGICK_HOME="${pkgs.imagemagick.dev}" - export PYTHONPATH=$PYTHONPATH:../ - py.test - cd .. - ''; - - doCheck = !isPyPy; # failures due to sqla version mismatch - - meta = with lib; { - homepage = "https://github.com/dahlia/sqlalchemy-imageattach"; - description = "SQLAlchemy extension for attaching images to entity objects"; - license = licenses.mit; - broken = true; # Incompatible with sqlalchemy>=1.4 (https://github.com/dahlia/sqlalchemy-imageattach/issues/47) - }; - -} diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix index d379fc92942..b6e800a7ed3 100644 --- a/pkgs/development/python-modules/sqlalchemy/default.nix +++ b/pkgs/development/python-modules/sqlalchemy/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "SQLAlchemy"; - version = "1.4.32"; + version = "1.4.35"; src = fetchPypi { inherit pname version; - sha256 = "sha256-b90txZMdqrd4wrZbA99q5oN24CijCY62JNCQnZmYhbw="; + hash = "sha256-L/yBOwHcZHOZD15XXyEMpawvVGWs45CLeP/W0gBYqrU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/starlette/default.nix b/pkgs/development/python-modules/starlette/default.nix index 00283cd9ec9..caa841339e1 100644 --- a/pkgs/development/python-modules/starlette/default.nix +++ b/pkgs/development/python-modules/starlette/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "starlette"; - version = "0.18.0"; + version = "0.19.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "encode"; repo = pname; rev = version; - sha256 = "sha256-N2X9pjCiQ6TKRcm6VlyybLLyCdjQuIZHu1vK99gY8rY="; + sha256 = "sha256-gjRTMzoQ8pqxjIusRwRXGs72VYo6xsp2DSUxmEr9KxU="; }; postPatch = '' diff --git a/pkgs/development/python-modules/stookalert/default.nix b/pkgs/development/python-modules/stookalert/default.nix new file mode 100644 index 00000000000..82552ca44bb --- /dev/null +++ b/pkgs/development/python-modules/stookalert/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchPypi +, requests +}: + +buildPythonPackage rec { + pname = "stookalert"; + version = "0.1.4"; + + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + sha256 = "38c479e2fb7668f9b37aff0f9ffdd7bfd1ee9393528f2d3d36b5911b40da70a1"; + }; + + propagatedBuildInputs = [ + requests + ]; + + # upstream has no tests + doCheck = false; + + pythonImportsCheck = [ "stookalert" ]; + + meta = { + description = "Python package for the RIVM Stookalert"; + homepage = "https://github.com/fwestenberg/stookalert"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix index b2362d8ed77..c0bd1751bf1 100644 --- a/pkgs/development/python-modules/stripe/default.nix +++ b/pkgs/development/python-modules/stripe/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "stripe"; - version = "2.72.0"; + version = "2.73.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-nKjoejNzV9IAjSdP9WNi8hnnNnEDC+KmNnSN7rE3d/s="; + hash = "sha256-Z5JG1mPaX7OElL48OoIljUdqu4TKrmfwrh85Z81i0zo="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/svg-path/default.nix b/pkgs/development/python-modules/svg-path/default.nix index e01909fc93a..b5b15476322 100644 --- a/pkgs/development/python-modules/svg-path/default.nix +++ b/pkgs/development/python-modules/svg-path/default.nix @@ -1,13 +1,37 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib +, buildPythonPackage +, fetchPypi +, pillow +, pytestCheckHook +, pythonOlder +}: + buildPythonPackage rec { pname = "svg.path"; - version = "4.1"; + version = "6.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "7e6847ba690ff620e20f152818d52e1685b993aacbc41b321f8fee3d1cb427db"; + hash = "sha256-X78HaJFzywl3aA4Sl58wHQu2r1NVyjlsww0+ESx5TdU="; }; + checkInputs = [ + pillow + pytestCheckHook + ]; + + disabledTests = [ + # generated image differs from example + "test_image" + ]; + + pythonImportsCheck = [ + "svg.path" + ]; + meta = with lib; { description = "SVG path objects and parser"; homepage = "https://github.com/regebro/svg.path"; diff --git a/pkgs/development/python-modules/symengine/default.nix b/pkgs/development/python-modules/symengine/default.nix index db0f01ae51f..ee2a0873845 100644 --- a/pkgs/development/python-modules/symengine/default.nix +++ b/pkgs/development/python-modules/symengine/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, fetchpatch , fetchFromGitHub , cython , cmake @@ -12,6 +13,7 @@ buildPythonPackage rec { pname = "symengine"; version = "0.9.2"; + format = "setuptools"; src = fetchFromGitHub { owner = "symengine"; @@ -20,13 +22,18 @@ buildPythonPackage rec { sha256 = "sha256-ZHplYEG97foy/unOdSokFFkDl4LK5TI4kypHSLpcCM4="; }; - postConfigure = '' + patches = [ + (fetchpatch { + # setuptools 61 compat + url = "https://github.com/symengine/symengine.py/commit/987e665e71cf92d1b021d7d573a1b9733408eecf.patch"; + hash = "sha256-2QbNdw/lKYRIRpOU5BiwF2kK+5Lh2j/Q82MKUIvl0+c="; + }) + ]; + + postPatch = '' substituteInPlace setup.py \ --replace "\"cmake\"" "\"${cmake}/bin/cmake\"" \ --replace "'cython>=0.29.24'" "'cython'" - - substituteInPlace cmake/FindCython.cmake \ - --replace "SET(CYTHON_BIN cython" "SET(CYTHON_BIN ${cython}/bin/cython" ''; nativeBuildUnputs = [ cmake ]; diff --git a/pkgs/development/python-modules/sympy/default.nix b/pkgs/development/python-modules/sympy/default.nix index 7d6206f04c8..17765a37529 100644 --- a/pkgs/development/python-modules/sympy/default.nix +++ b/pkgs/development/python-modules/sympy/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "sympy"; - version = "1.9"; + version = "1.10.1"; src = fetchPypi { inherit pname version; - sha256 = "c7a880e229df96759f955d4f3970d4cabce79f60f5b18830c08b90ce77cd5fdc"; + sha256 = "sha256-WTnu/9+eFSFyYBRjYmwCKiwn51z2J43o1AHVDJ1YeHs="; }; checkInputs = [ glibcLocales ]; diff --git a/pkgs/development/python-modules/tellduslive/default.nix b/pkgs/development/python-modules/tellduslive/default.nix index 5a6a84af839..f933553dcdb 100644 --- a/pkgs/development/python-modules/tellduslive/default.nix +++ b/pkgs/development/python-modules/tellduslive/default.nix @@ -3,12 +3,16 @@ , docopt , fetchFromGitHub , requests -, requests_oauthlib +, requests-oauthlib +, pythonOlder }: buildPythonPackage rec { pname = "tellduslive"; version = "0.10.11"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "molobrakos"; @@ -20,12 +24,15 @@ buildPythonPackage rec { propagatedBuildInputs = [ docopt requests - requests_oauthlib + requests-oauthlib ]; # Project has no tests doCheck = false; - pythonImportsCheck = [ "tellduslive" ]; + + pythonImportsCheck = [ + "tellduslive" + ]; meta = with lib; { description = "Python module to communicate with Telldus Live"; diff --git a/pkgs/development/python-modules/tensorflow-datasets/default.nix b/pkgs/development/python-modules/tensorflow-datasets/default.nix index 959ecd9092a..38d6458d4fd 100644 --- a/pkgs/development/python-modules/tensorflow-datasets/default.nix +++ b/pkgs/development/python-modules/tensorflow-datasets/default.nix @@ -100,7 +100,6 @@ buildPythonPackage rec { tensorflow tifffile ]; - pytestFlagsArray = [ "-n $NIX_BUILD_CORES" ]; disabledTestPaths = [ # Sandbox violations: network access, filesystem write attempts outside of build dir, ... diff --git a/pkgs/development/python-modules/tensorflow/bin.nix b/pkgs/development/python-modules/tensorflow/bin.nix index 5a35fb8ded4..f5044a360f0 100644 --- a/pkgs/development/python-modules/tensorflow/bin.nix +++ b/pkgs/development/python-modules/tensorflow/bin.nix @@ -48,7 +48,8 @@ in buildPythonPackage { inherit (packages) version; format = "wheel"; - disabled = pythonAtLeast "3.10"; + # See https://github.com/tensorflow/tensorflow/issues/55581#issuecomment-1101890383 + disabled = pythonAtLeast "3.10" && !cudaSupport; src = let pyVerNoDot = lib.strings.stringAsChars (x: if x == "." then "" else x) python.pythonVersion; @@ -97,11 +98,11 @@ in buildPythonPackage { ( cd unpacked/tensorflow* # Adjust dependency requirements: - # - Relax gast version requirement that doesn't match what we have packaged + # - Relax tensorflow-estimator version requirement that doesn't match what we have packaged # - The purpose of python3Packages.libclang is not clear at the moment and we don't have it packaged yet # - keras and tensorlow-io-gcs-filesystem will be considered as optional for now. sed -i *.dist-info/METADATA \ - -e "s/Requires-Dist: gast.*/Requires-Dist: gast/" \ + -e "s/Requires-Dist: tf-estimator-nightly.*/Requires-Dist: tensorflow-estimator/" \ -e "/Requires-Dist: libclang/d" \ -e "/Requires-Dist: keras/d" \ -e "/Requires-Dist: tensorflow-io-gcs-filesystem/d" @@ -177,7 +178,6 @@ in buildPythonPackage { pythonImportsCheck = [ "tensorflow" - "tensorflow.keras" "tensorflow.python" "tensorflow.python.framework" ]; diff --git a/pkgs/development/python-modules/tensorflow/binary-hashes.nix b/pkgs/development/python-modules/tensorflow/binary-hashes.nix index 4b2f9d52840..0d221452bb7 100644 --- a/pkgs/development/python-modules/tensorflow/binary-hashes.nix +++ b/pkgs/development/python-modules/tensorflow/binary-hashes.nix @@ -1,39 +1,51 @@ { -version = "2.7.0"; +version = "2.8.0"; linux_py_37_cpu = { - url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.7.0-cp37-cp37m-manylinux2010_x86_64.whl"; - sha256 = "1irw4ri1fbxbj251cnjbr12gxsyj2k30asxjfxjpxhc9b0cchhx0"; + url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.8.0-cp37-cp37m-manylinux2010_x86_64.whl"; + sha256 = "1nza8i0nvqgrcwj2yy74a3wgpgf52svf0yrz9xd6l18gsifkmkx0"; }; linux_py_38_cpu = { - url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.7.0-cp38-cp38-manylinux2010_x86_64.whl"; - sha256 = "11a1rimr998lvvjdg03rqr8h2h7x6bbd4gyv74biwgaxmjczvjdj"; + url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.8.0-cp38-cp38-manylinux2010_x86_64.whl"; + sha256 = "1li2gllznd5w3hh2w9ibh5lkvvssnwh5vhk7i873dxjjdl1w8sqy"; }; linux_py_39_cpu = { - url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.7.0-cp39-cp39-manylinux2010_x86_64.whl"; - sha256 = "0x1zzmgq7hl2k98p8870h0yhaik39nc1ckvxirjx8simpj8ghsbp"; + url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.8.0-cp39-cp39-manylinux2010_x86_64.whl"; + sha256 = "03swmyak1hb0k6b2fi9a8g76fi57jz30ym015a576iwp42pqcgkq"; +}; +linux_py_310_cpu = { + url = "https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow_cpu-2.8.0-cp310-cp310-manylinux2010_x86_64.whl"; + sha256 = ""; }; linux_py_37_gpu = { - url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.7.0-cp37-cp37m-manylinux2010_x86_64.whl"; - sha256 = "1x5yyxzkly9gdyhcfq4x7w7sqqxh6cw5qnfwbvzj5349xwrm63wi"; + url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.8.0-cp37-cp37m-manylinux2010_x86_64.whl"; + sha256 = "06q3vjrlqfkqa5r18hla3d8ms1sqa897g7fpnqizgh4k8skhm9fq"; }; linux_py_38_gpu = { - url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.7.0-cp38-cp38-manylinux2010_x86_64.whl"; - sha256 = "0prxa8yc6lbq62vnh8cw6dhcrnkdjih62kbg6pbw4gmgcbf6v6fg"; + url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.8.0-cp38-cp38-manylinux2010_x86_64.whl"; + sha256 = "0099aa5g19zi74n6bamhmmcgp096m41fhr61swkwnh92myz1ylgb"; }; linux_py_39_gpu = { - url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.7.0-cp39-cp39-manylinux2010_x86_64.whl"; - sha256 = "0jjv8vm20d0airml68bxhassp4yg09rcz2a39aa511cz8mavj0l6"; + url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.8.0-cp39-cp39-manylinux2010_x86_64.whl"; + sha256 = "0zw20yvlqga7znr13pa10qxww42mj64209syiicgvhs74ji1zdca"; +}; +linux_py_310_gpu = { + url = "https://storage.googleapis.com/tensorflow/linux/gpu/tensorflow_gpu-2.8.0-cp310-cp310-manylinux2010_x86_64.whl"; + sha256 = "06kwjlhzl46jhjcg836crys2aw39x0g8s1s9qfscm1kbwzbww1hq"; }; mac_py_37_cpu = { - url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.7.0-cp37-cp37m-macosx_10_11_x86_64.whl"; - sha256 = "1gr95ck0h4wzhdacjfhkzxdw4zglm85fc54swqhyzzv1f5n9vw8j"; + url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.8.0-cp37-cp37m-macosx_10_14_x86_64.whl"; + sha256 = "1z5w6wx3h45fz0ji9kn2m2kf963bqbvmqc7cyjv4ixymd0rp4jps"; }; mac_py_38_cpu = { - url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.7.0-cp38-cp38-macosx_10_11_x86_64.whl"; - sha256 = "1h3qlvlrwyvxynh5flvyqk7grbvyqc21ljqhlvds436hpn2kqrgb"; + url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.8.0-cp38-cp38-macosx_10_14_x86_64.whl"; + sha256 = "1h5v8flhc5zb038ld0av7638cyqqkrib379lrlzvf8dw7q8ry3yx"; }; mac_py_39_cpu = { - url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.7.0-cp39-cp39-macosx_10_11_x86_64.whl"; - sha256 = "0pyj1p2yik6ysdqn8n6cz1nqni0s9xx51ifmvdx4dl3hrzp86jz2"; + url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.8.0-cp39-cp39-macosx_10_14_x86_64.whl"; + sha256 = "0qsmlrf8h2gxkimniyrz9bniaqpdsd92pficmsrq30k8rkz2bwjj"; +}; +mac_py_310_cpu = { + url = "https://storage.googleapis.com/tensorflow/mac/cpu/tensorflow-2.8.0-cp310-cp310-macosx_10_14_x86_64.whl"; + sha256 = "0lnwbvil6c6ai10lcaj9ay9pya207s9g204273msjalm1hpbmhvq"; }; } diff --git a/pkgs/development/python-modules/tensorflow/prefetcher.sh b/pkgs/development/python-modules/tensorflow/prefetcher.sh index bb189bb06d6..3edc6715827 100755 --- a/pkgs/development/python-modules/tensorflow/prefetcher.sh +++ b/pkgs/development/python-modules/tensorflow/prefetcher.sh @@ -1,6 +1,6 @@ #!/usr/bin/env bash -version="2.7.0" +version="2.8.0" bucket="https://storage.googleapis.com/tensorflow" @@ -11,12 +11,15 @@ url_and_key_list=( "linux_py_37_cpu $bucket/linux/cpu/tensorflow_cpu-${version}-cp37-cp37m-manylinux2010_x86_64.whl" "linux_py_38_cpu $bucket/linux/cpu/tensorflow_cpu-${version}-cp38-cp38-manylinux2010_x86_64.whl" "linux_py_39_cpu $bucket/linux/cpu/tensorflow_cpu-${version}-cp39-cp39-manylinux2010_x86_64.whl" +"linux_py_310_cpu $bucket/linux/cpu/tensorflow_cpu-${version}-cp310-cp310-manylinux2010_x86_64.whl" "linux_py_37_gpu $bucket/linux/gpu/tensorflow_gpu-${version}-cp37-cp37m-manylinux2010_x86_64.whl" "linux_py_38_gpu $bucket/linux/gpu/tensorflow_gpu-${version}-cp38-cp38-manylinux2010_x86_64.whl" "linux_py_39_gpu $bucket/linux/gpu/tensorflow_gpu-${version}-cp39-cp39-manylinux2010_x86_64.whl" -"mac_py_37_cpu $bucket/mac/cpu/tensorflow-${version}-cp37-cp37m-macosx_10_11_x86_64.whl" -"mac_py_38_cpu $bucket/mac/cpu/tensorflow-${version}-cp38-cp38-macosx_10_11_x86_64.whl" -"mac_py_39_cpu $bucket/mac/cpu/tensorflow-${version}-cp39-cp39-macosx_10_11_x86_64.whl" +"linux_py_310_gpu $bucket/linux/gpu/tensorflow_gpu-${version}-cp310-cp310-manylinux2010_x86_64.whl" +"mac_py_37_cpu $bucket/mac/cpu/tensorflow-${version}-cp37-cp37m-macosx_10_14_x86_64.whl" +"mac_py_38_cpu $bucket/mac/cpu/tensorflow-${version}-cp38-cp38-macosx_10_14_x86_64.whl" +"mac_py_39_cpu $bucket/mac/cpu/tensorflow-${version}-cp39-cp39-macosx_10_14_x86_64.whl" +"mac_py_310_cpu $bucket/mac/cpu/tensorflow-${version}-cp310-cp310-macosx_10_14_x86_64.whl" ) hashfile=binary-hashes.nix diff --git a/pkgs/development/python-modules/terminado/default.nix b/pkgs/development/python-modules/terminado/default.nix index 6a63fe53716..30673971a16 100644 --- a/pkgs/development/python-modules/terminado/default.nix +++ b/pkgs/development/python-modules/terminado/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "terminado"; - version = "0.13.1"; + version = "0.13.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-W4K1xumR8HBadvlh9DJip/seVbCTwW3Kg/FjhKfzm3s="; + sha256 = "sha256-lNHPq2NSWZP31cm0aaUKGNDN85Q1tZeFcVU53UHjbA0="; }; propagatedBuildInputs = [ ptyprocess tornado ]; diff --git a/pkgs/development/python-modules/tifffile/default.nix b/pkgs/development/python-modules/tifffile/default.nix index 01294ff5007..0faea93ebde 100644 --- a/pkgs/development/python-modules/tifffile/default.nix +++ b/pkgs/development/python-modules/tifffile/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "tifffile"; - version = "2022.2.9"; + version = "2022.3.25"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ftp0EXZDaBuyyqaVtI854iQ7SIf3z5kdWt/9gT5cg3M="; + hash = "sha256-bZQ/LAGxo0pHbJY9EZVl+6EI9VngYUJsY6UVeEaVntk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/tomlkit/default.nix b/pkgs/development/python-modules/tomlkit/default.nix index 22f3ffab299..fbe6c7be4d1 100644 --- a/pkgs/development/python-modules/tomlkit/default.nix +++ b/pkgs/development/python-modules/tomlkit/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "tomlkit"; - version = "0.10.0"; + version = "0.10.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-2ZlGxq7TOHyYuJ2R+57f+PkBv5JVkBCBJmqE+1YErc0="; + sha256 = "sha256-PFF4lOre9T6QctND035EJ7jwtiAKcLfJoZsuvR9TuVE="; }; propagatedBuildInputs = diff --git a/pkgs/development/python-modules/torchinfo/default.nix b/pkgs/development/python-modules/torchinfo/default.nix index 331729e25c5..da0544c299c 100644 --- a/pkgs/development/python-modules/torchinfo/default.nix +++ b/pkgs/development/python-modules/torchinfo/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "torchinfo"; - version = "1.6.3"; + version = "1.6.5"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-g1xhtdwygzPTTswP8iZ364ynBQE7D+aAsZ3d9EpyvIA="; + sha256 = "sha256-Vg/TXD+/VMIv1wHywaOuEj4MDTq90lUo99n+Nppu0uI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/tornado/default.nix b/pkgs/development/python-modules/tornado/default.nix index 893943cbc72..4519641c482 100644 --- a/pkgs/development/python-modules/tornado/default.nix +++ b/pkgs/development/python-modules/tornado/default.nix @@ -2,28 +2,34 @@ , python , buildPythonPackage , fetchPypi +, pycares +, pycurl +, twisted }: buildPythonPackage rec { pname = "tornado"; version = "6.1"; - # We specify the name of the test files to prevent - # https://github.com/NixOS/nixpkgs/issues/14634 - checkPhase = '' - ${python.interpreter} -m unittest discover *_test.py - ''; - src = fetchPypi { inherit pname version; sha256 = "33c6e81d7bd55b468d2e793517c909b139960b6c790a60b7991b9b6b76fb9791"; }; + checkInputs = [ + pycares + pycurl + twisted + ]; + + pythonImportsCheck = [ "tornado" ]; + __darwinAllowLocalNetworking = true; - meta = { + meta = with lib; { description = "A web framework and asynchronous networking library"; homepage = "https://www.tornadoweb.org/"; - license = lib.licenses.asl20; + license = licenses.asl20; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/tpm2-pytss/default.nix b/pkgs/development/python-modules/tpm2-pytss/default.nix index 5cd14c7704d..77f778b0010 100644 --- a/pkgs/development/python-modules/tpm2-pytss/default.nix +++ b/pkgs/development/python-modules/tpm2-pytss/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { # Last version on github is 0.2.4, but it looks # like a mistake (it's missing commits from 0.1.9) - version = "1.0.0"; + version = "1.1.0"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Gx1nIXYuhTmQva9LmtTYvd1nyRH/pBQZ5bJ8OLcc1lo="; + sha256 = "sha256-O0d1b99/V8b3embg8veerTrJGSVb/prlPVb7qSHErdQ="; }; postPatch = '' substituteInPlace tpm2_pytss/config.py --replace \ diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix index 2613a2b587d..40b6b47a946 100644 --- a/pkgs/development/python-modules/tqdm/default.nix +++ b/pkgs/development/python-modules/tqdm/default.nix @@ -14,11 +14,11 @@ buildPythonPackage rec { pname = "tqdm"; - version = "4.63.0"; + version = "4.63.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-HZg17ejjlLuMncv/vKAtcXIXETrcZ5I2hz7qrFvAs80="; + sha256 = "sha256-QjCkkRmkFsiMxH0NLTLV2Q8aKC1eSX1JgBlQcE5Jhj0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/trytond/default.nix b/pkgs/development/python-modules/trytond/default.nix index 6a52dd869e0..c2509c662d3 100644 --- a/pkgs/development/python-modules/trytond/default.nix +++ b/pkgs/development/python-modules/trytond/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonApplication +, fetchpatch , fetchPypi , pythonOlder , mock @@ -34,6 +35,14 @@ buildPythonApplication rec { sha256 = "sha256-Sof6A9lxU70YnCbboJr56CAdTL0cRbaRNxdvG5Tnqnw="; }; + patches = [ + (fetchpatch { + # werkzeug 2.1 compatibility for the tests + url = "https://github.com/tryton/trytond/commit/86a50ca06cf0d79404dbd731141ed29f8e9fcb9d.patch"; + hash = "sha256-xY5Sdhkd0lEgscV7NHwX2YWxobWqQFElY5BJvDT+we8="; + }) + ]; + # Tells the tests which database to use DB_NAME = ":memory:"; diff --git a/pkgs/development/python-modules/tweepy/default.nix b/pkgs/development/python-modules/tweepy/default.nix index 6b7dbee8fa5..a2c815b45e2 100644 --- a/pkgs/development/python-modules/tweepy/default.nix +++ b/pkgs/development/python-modules/tweepy/default.nix @@ -3,11 +3,11 @@ , buildPythonPackage , fetchFromGitHub , oauthlib -, requests +, pytestCheckHook , pythonOlder +, requests +, requests-oauthlib , vcrpy -, pytestCheckHook -, requests_oauthlib }: buildPythonPackage rec { @@ -20,15 +20,15 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = pname; repo = pname; - rev = "refs/tags/v${version}"; - sha256 = "sha256-RaM2JN2WOHyZY+AxzgQLvhXg6UnevDbSFSR4jFLsYrc="; + rev = "v${version}"; + hash = "sha256-RaM2JN2WOHyZY+AxzgQLvhXg6UnevDbSFSR4jFLsYrc="; }; propagatedBuildInputs = [ aiohttp oauthlib requests - requests_oauthlib + requests-oauthlib ]; checkInputs = [ diff --git a/pkgs/development/python-modules/twill/default.nix b/pkgs/development/python-modules/twill/default.nix index 2ae36cd5408..f68ec91e1cb 100644 --- a/pkgs/development/python-modules/twill/default.nix +++ b/pkgs/development/python-modules/twill/default.nix @@ -1,31 +1,41 @@ -{ lib, buildPythonPackage, fetchPypi, nose +{ lib +, buildPythonPackage +, fetchPypi , lxml , requests , pyparsing +, pythonOlder }: + buildPythonPackage rec { pname = "twill"; - version = "3.0.1"; + version = "3.0.2"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "57cde4c3a2265f1a14d80007aa4f66c2135d509555499e9b156d2b4cf5048c2c"; + hash = "sha256-dWtrdkiR1+IBfeF9jwbOjKE2UMXDJji0iOb+USbY7zk="; }; - checkInputs = [ nose ]; - propagatedBuildInputs = [ lxml requests pyparsing ]; - doCheck = false; # pypi package comes without tests, other homepage does not provide all verisons + pythonImportsCheck = [ + "twill" + ]; + + # pypi package comes without tests, other homepage does not provide all verisons + doCheck = false; meta = with lib; { - homepage = "https://twill-tools.github.io/twill/"; description = "A simple scripting language for Web browsing"; - license = licenses.mit; + homepage = "https://twill-tools.github.io/twill/"; + license = licenses.mit; maintainers = with maintainers; [ mic92 ]; }; } diff --git a/pkgs/development/python-modules/twine/default.nix b/pkgs/development/python-modules/twine/default.nix index d6fea594211..6cfb7f36047 100644 --- a/pkgs/development/python-modules/twine/default.nix +++ b/pkgs/development/python-modules/twine/default.nix @@ -1,40 +1,42 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , importlib-metadata , keyring , pkginfo -, pyblake2 , readme_renderer , requests , requests-toolbelt -, setuptools-scm -, tqdm -, colorama +, rich , rfc3986 +, setuptools-scm +, urllib3 }: buildPythonPackage rec { pname = "twine"; - version = "3.8.0"; + version = "4.0.0"; format = "pyproject"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-jvpSZY4K53BoahO2dVaTKPH7qYN+XeGGe/5fRqmu/hk="; + sha256 = "sha256-gXqgwL3AKl6+MgUeFo4jxxoGCDNOYkx5MBHxINu8Bbc="; }; nativeBuildInputs = [ setuptools-scm ]; + propagatedBuildInputs = [ importlib-metadata keyring pkginfo - pyblake2 readme_renderer requests requests-toolbelt - tqdm - colorama rfc3986 + rich + urllib3 ]; # Requires network diff --git a/pkgs/development/python-modules/twisted/default.nix b/pkgs/development/python-modules/twisted/default.nix index ea7cca173a1..02a993fdf13 100644 --- a/pkgs/development/python-modules/twisted/default.nix +++ b/pkgs/development/python-modules/twisted/default.nix @@ -1,6 +1,5 @@ { lib, stdenv , buildPythonPackage -, fetchpatch , fetchPypi , python , zope_interface @@ -18,26 +17,14 @@ }: buildPythonPackage rec { pname = "Twisted"; - version = "22.2.0"; + version = "22.4.0"; src = fetchPypi { inherit pname version; extension = "tar.gz"; - sha256 = "1wml02jxni8k15984pskks7d6yin81w4d2ac026cpyiqd0gjpwsp"; + sha256 = "sha256-oEeZD1ffrh4L0rffJSbU8W3NyEN3TcEIt4xS8qXxNoA="; }; - patches = [ - (fetchpatch { - # https://github.com/twisted/twisted/security/advisories/GHSA-c2jg-hw38-jrqq - name = "CVE-2022-24801.patch"; - url = "https://github.com/twisted/twisted/commit/592217e951363d60e9cd99c5bbfd23d4615043ac.patch"; - hash = "sha256-psX5vAM9myuILuTazpebSk8QTT52CB6N7RXAY4MAV8g="; - excludes = [ - "src/twisted/web/newsfragments/10323.bugfix" - ]; - }) - ]; - propagatedBuildInputs = [ zope_interface incremental automat constantly hyperlink pyhamcrest attrs setuptools typing-extensions ]; passthru.extras.tls = [ pyopenssl service-identity idna ]; diff --git a/pkgs/development/python-modules/twitterapi/default.nix b/pkgs/development/python-modules/twitterapi/default.nix index acaf3bf640e..313249e50d9 100644 --- a/pkgs/development/python-modules/twitterapi/default.nix +++ b/pkgs/development/python-modules/twitterapi/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchFromGitHub , requests -, requests_oauthlib +, requests-oauthlib , pythonOlder }: @@ -17,12 +17,12 @@ buildPythonPackage rec { owner = "geduldig"; repo = "TwitterAPI"; rev = "v${version}"; - sha256 = "sha256-WqeoIZt2OGDXKPAbjm3cHI1kgiCEJC6+ROXXx4TR4b4="; + hash = "sha256-WqeoIZt2OGDXKPAbjm3cHI1kgiCEJC6+ROXXx4TR4b4="; }; propagatedBuildInputs = [ requests - requests_oauthlib + requests-oauthlib ]; # Tests are interacting with the Twitter API diff --git a/pkgs/development/python-modules/txtorcon/default.nix b/pkgs/development/python-modules/txtorcon/default.nix index c5fc7e1c6a4..167e090fca0 100644 --- a/pkgs/development/python-modules/txtorcon/default.nix +++ b/pkgs/development/python-modules/txtorcon/default.nix @@ -1,31 +1,24 @@ { lib, stdenv, python, buildPythonPackage, pythonOlder, fetchPypi, isPy3k, incremental, ipaddress, twisted -, automat, zope_interface, idna, pyopenssl, service-identity, pytest, mock, lsof -, GeoIP}: +, automat, zope_interface, idna, pyopenssl, service-identity, pytestCheckHook, mock, lsof +, GeoIP }: buildPythonPackage rec { pname = "txtorcon"; version = "22.0.0"; - checkInputs = [ pytest mock lsof GeoIP ]; - propagatedBuildInputs = [ - incremental twisted automat zope_interface - # extra dependencies required by twisted[tls] - idna pyopenssl service-identity - ] ++ lib.optionals (!isPy3k) [ ipaddress ]; - src = fetchPypi { inherit pname version; sha256 = "sha256-iaG2XjKks2nWfmwWY4f7xGjMXQUidEjSOaXn6XGKoFM="; }; - # Based on what txtorcon tox.ini will automatically test, allow back as far - # as Python 3.5. - disabled = pythonOlder "3.5"; + propagatedBuildInputs = [ + incremental twisted automat zope_interface + ] ++ twisted.extras.tls + ++ lib.optionals (!isPy3k) [ ipaddress ]; + + checkInputs = [ pytestCheckHook mock lsof GeoIP ]; doCheck = !(stdenv.isDarwin && stdenv.isAarch64); - checkPhase = '' - ${python.interpreter} -m twisted.trial -j $NIX_BUILD_CORES ./test - ''; meta = { description = "Twisted-based Tor controller client, with state-tracking and configuration abstractions"; diff --git a/pkgs/development/python-modules/typer/default.nix b/pkgs/development/python-modules/typer/default.nix index 17008eafc1b..9ef2b53b947 100644 --- a/pkgs/development/python-modules/typer/default.nix +++ b/pkgs/development/python-modules/typer/default.nix @@ -1,30 +1,34 @@ { lib , stdenv , buildPythonPackage +, fetchpatch , fetchPypi +, flit-core , click , pytestCheckHook , shellingham , pytest-xdist , pytest-sugar , coverage -, mypy -, black -, isort , pythonOlder }: buildPythonPackage rec { pname = "typer"; - version = "0.4.0"; + version = "0.4.1"; + format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "1pgm0zsylbmz1r96q4n3rfi0h3pn4jss2yfs83z0yxa90nmsxhv3"; + sha256 = "sha256-Vkau8Nk2ssdhoQOT8DhO5rXH/guz5c1xCxcTTKHZnP8="; }; + nativeBuildInputs = [ + flit-core + ]; + propagatedBuildInputs = [ click ]; @@ -34,10 +38,7 @@ buildPythonPackage rec { pytest-xdist pytest-sugar shellingham - coverage - mypy - black - isort + coverage # execs coverage in tests ]; preCheck = '' diff --git a/pkgs/development/python-modules/types-cryptography/default.nix b/pkgs/development/python-modules/types-cryptography/default.nix index 50882472036..449ab50117c 100644 --- a/pkgs/development/python-modules/types-cryptography/default.nix +++ b/pkgs/development/python-modules/types-cryptography/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "types-cryptography"; - version = "3.3.19"; + version = "3.3.20"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+VcTjwczMrnAfq2wgx76pXj9tgTlU6w41yxGeutLfCM="; + sha256 = "sha256-u+9bZpcllvPNYbMJFxn8k14IHzu6h+zqVhvA27Fnh1M="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/types-dateutil/default.nix b/pkgs/development/python-modules/types-dateutil/default.nix index 4cefc57ed59..39fb824bdcd 100644 --- a/pkgs/development/python-modules/types-dateutil/default.nix +++ b/pkgs/development/python-modules/types-dateutil/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-python-dateutil"; - version = "2.8.10"; + version = "2.8.11"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-a886rnJC5Xk7r9eyvPtOJV63srMUSs0N8OGC3OWMytM="; + sha256 = "sha256-7cBdC5MgGSirC1/ysxRBPdPSsk6xLEcCl++Sned8k+8="; }; pythonImportsCheck = [ "dateutil-stubs" ]; diff --git a/pkgs/development/python-modules/types-decorator/default.nix b/pkgs/development/python-modules/types-decorator/default.nix index f8dc74c00f9..8d6d2038b3b 100644 --- a/pkgs/development/python-modules/types-decorator/default.nix +++ b/pkgs/development/python-modules/types-decorator/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-decorator"; - version = "5.1.4"; + version = "5.1.5"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "463c04b192108e2b3f409df8a3eaaf8d44e3e98965c11e473ed2a97da591798b"; + sha256 = "sha256-CrPgAZyBGRIrXzD0IlUkcbkc8xOLPI69krQb1d3h3QI="; }; # Modules doesn't have tests diff --git a/pkgs/development/python-modules/types-paramiko/default.nix b/pkgs/development/python-modules/types-paramiko/default.nix index 5b87e8079a5..4405a02770a 100644 --- a/pkgs/development/python-modules/types-paramiko/default.nix +++ b/pkgs/development/python-modules/types-paramiko/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "types-paramiko"; - version = "2.8.17"; + version = "2.8.19"; src = fetchPypi { inherit pname version; - sha256 = "sha256-1toFPkau9cYpvE6lvatWZwhlNerg/P2N6EBpQ7g00uY="; + sha256 = "sha256-UhkthDZk73wfh7n+Bpe7u1qPgS5DAWlEz+q+x93spCM="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index b29a0792ae8..deda83411fe 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.27.16"; + version = "2.27.19"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-yAEMGLKRp++2CxRS2+ElMLwlaT3WV+cMYoA/zcS//ps="; + sha256 = "sha256-eV43gRcIjR5L9BosAaFTtz1upAqp18CsdTq96EwNOo8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-tabulate/default.nix b/pkgs/development/python-modules/types-tabulate/default.nix index 6d7ceade85c..1fc11aeede9 100644 --- a/pkgs/development/python-modules/types-tabulate/default.nix +++ b/pkgs/development/python-modules/types-tabulate/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "types-tabulate"; - version = "0.8.6"; + version = "0.8.7"; src = fetchPypi { inherit pname version; - hash = "sha256-P037eVRJwheO1cIU7FEUwESx7t1xrQoQA7xnDwnYcQo="; + hash = "sha256-Cs0ClYZuXy3i6Qc4/wvBIBdR4d0Ci9MMv6Qap6Zpkp4="; }; # Module doesn't have tests diff --git a/pkgs/development/python-modules/types-urllib3/default.nix b/pkgs/development/python-modules/types-urllib3/default.nix index 235535ce971..45b6dd97c2d 100644 --- a/pkgs/development/python-modules/types-urllib3/default.nix +++ b/pkgs/development/python-modules/types-urllib3/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-urllib3"; - version = "1.26.11"; + version = "1.26.13"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-JNZORBFohR6wXx0CLeGK4xVY9WScjxEX44TC6F4xMVs="; + hash = "sha256-QPj7XozX1X6K797j/dXpMKoaG7QXnNrdVSJs6liK95A="; }; # Module doesn't have tests diff --git a/pkgs/development/python-modules/tzdata/default.nix b/pkgs/development/python-modules/tzdata/default.nix index cfc46a658d3..ee8166abb94 100644 --- a/pkgs/development/python-modules/tzdata/default.nix +++ b/pkgs/development/python-modules/tzdata/default.nix @@ -9,12 +9,12 @@ buildPythonPackage rec { pname = "tzdata"; - version = "2021.5"; + version = "2022.1"; format = "pyproject"; src = fetchPypi { inherit pname version; - hash = "sha256-aNvkGv0BuGeJS739VPoD9GjPpPAIa/tK3NjejyTz7iE="; + hash = "sha256-i1NqjsY9wHUTQrOYQZOjEY+Pyir+JXUrubf//TmFUtM="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix index f3c8792e569..a838f44eb95 100644 --- a/pkgs/development/python-modules/uamqp/default.nix +++ b/pkgs/development/python-modules/uamqp/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "uamqp"; - version = "1.5.1"; + version = "1.5.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-VevtbXtOTKQEqVYpNKFrDhvyDBJY+uQMhld6in+EroE="; + sha256 = "sha256-guhfOMvddC4E+oOmvpeG8GsXEfqLcSHVdtj3w8fF2Vs="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ufo2ft/default.nix b/pkgs/development/python-modules/ufo2ft/default.nix index 03ebd566b70..8f700107bce 100644 --- a/pkgs/development/python-modules/ufo2ft/default.nix +++ b/pkgs/development/python-modules/ufo2ft/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "ufo2ft"; - version = "2.25.3"; + version = "2.26.0"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-4OuEol+YorvOeK5bj33Po8V9KD0trcgTMXCTQ+J7q94="; + sha256 = "sha256-1WQAs1ypWtLObgBzPtqtvHjkKnDWohu3PbI3bF7B0Sg="; }; patches = [ diff --git a/pkgs/development/python-modules/umap-learn/default.nix b/pkgs/development/python-modules/umap-learn/default.nix index 91e8512d18d..1281d90cdaf 100644 --- a/pkgs/development/python-modules/umap-learn/default.nix +++ b/pkgs/development/python-modules/umap-learn/default.nix @@ -15,13 +15,13 @@ buildPythonPackage rec { pname = "umap-learn"; - version = "0.5.2"; + version = "0.5.3"; src = fetchFromGitHub { owner = "lmcinnes"; repo = "umap"; rev = version; - sha256 = "sha256-JfYuuE1BP+HdiEl7l01sZ/XXlEwHyAsLjK9nqhRd/3o="; + sha256 = "sha256-S2+k7Ec4AxsN6d0GUGnU81oLnBgmlZp8OmUFCNaUJYw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/urllib3/default.nix b/pkgs/development/python-modules/urllib3/default.nix index 4c1a61b09fc..6d29a107f00 100644 --- a/pkgs/development/python-modules/urllib3/default.nix +++ b/pkgs/development/python-modules/urllib3/default.nix @@ -18,12 +18,12 @@ buildPythonPackage rec { pname = "urllib3"; - version = "1.26.8"; + version = "1.26.9"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-Dnwz2aY+fd/LhngKrIe+/C+930bFjbtIfghV987sKDw="; + hash = "sha256-qrrxZHeAal4d0ZqkH4wreVDdPHRjYtfjIj2+beasRI4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ush/default.nix b/pkgs/development/python-modules/ush/default.nix index d7a90bcb9e8..3e7773fb2fd 100644 --- a/pkgs/development/python-modules/ush/default.nix +++ b/pkgs/development/python-modules/ush/default.nix @@ -1,4 +1,9 @@ -{ lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook}: +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, six +}: buildPythonPackage rec { pname = "ush"; @@ -11,7 +16,10 @@ buildPythonPackage rec { sha256 = "sha256-eL3vG3yS02enbLYorKvvYKbju9HInffUhrZgkodwhvo="; }; - checkInputs = [ pytestCheckHook ]; + checkInputs = [ + pytestCheckHook + six + ]; disabledTestPaths = [ # seems to be outdated? diff --git a/pkgs/development/python-modules/validators/default.nix b/pkgs/development/python-modules/validators/default.nix index 29ec9cd73d7..f83fe801a2a 100644 --- a/pkgs/development/python-modules/validators/default.nix +++ b/pkgs/development/python-modules/validators/default.nix @@ -3,6 +3,7 @@ , fetchPypi , isPy27 , decorator +, six , pytestCheckHook }: @@ -18,6 +19,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ decorator + six ]; checkInputs = [ diff --git a/pkgs/development/python-modules/validictory/default.nix b/pkgs/development/python-modules/validictory/default.nix index 29ffb76591e..c4172079a60 100644 --- a/pkgs/development/python-modules/validictory/default.nix +++ b/pkgs/development/python-modules/validictory/default.nix @@ -1,5 +1,6 @@ { lib , buildPythonPackage +, pythonAtLeast , fetchPypi }: @@ -7,6 +8,8 @@ buildPythonPackage rec { pname = "validictory"; version = "1.1.2"; + disabled = pythonAtLeast "3.10"; # abandoned, should be removed when we move to py310/311 + src = fetchPypi { inherit pname version; sha256 = "1fim11vj990rmn59qd67knccjx1p4an7gavbgprpabsrb13bi1rs"; diff --git a/pkgs/development/python-modules/variants/default.nix b/pkgs/development/python-modules/variants/default.nix index e23407ab06b..2b5dccec558 100644 --- a/pkgs/development/python-modules/variants/default.nix +++ b/pkgs/development/python-modules/variants/default.nix @@ -4,6 +4,7 @@ , pytest-runner , setuptools-scm , pytestCheckHook +, six , lib }: @@ -17,12 +18,12 @@ buildPythonPackage rec { }; nativeBuildInputs = [ - pytest-runner setuptools-scm ]; checkInputs = [ pytestCheckHook + six ]; meta = with lib; { diff --git a/pkgs/development/python-modules/vdirsyncer/default.nix b/pkgs/development/python-modules/vdirsyncer/default.nix index edb61ccb703..b5124673951 100644 --- a/pkgs/development/python-modules/vdirsyncer/default.nix +++ b/pkgs/development/python-modules/vdirsyncer/default.nix @@ -7,7 +7,7 @@ , click-threading , requests-toolbelt , requests -, requests_oauthlib # required for google oauth sync +, requests-oauthlib , atomicwrites , hypothesis , pytestCheckHook @@ -17,22 +17,31 @@ }: buildPythonPackage rec { - version = "0.18.0"; pname = "vdirsyncer"; + version = "0.18.0"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-J7w+1R93STX7ujkpFcjI1M9jmuUaRLZ0aGtJoQJfwgE="; + hash = "sha256-J7w+1R93STX7ujkpFcjI1M9jmuUaRLZ0aGtJoQJfwgE="; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "click-log>=0.3.0, <0.4.0" "click-log>=0.3.0, <0.5.0" + + sed -i -e '/--cov/d' -e '/--no-cov/d' setup.cfg + ''; + propagatedBuildInputs = [ atomicwrites click click-log click-threading requests - requests_oauthlib # required for google oauth sync + requests-oauthlib requests-toolbelt ]; @@ -47,10 +56,6 @@ buildPythonPackage rec { pytest-subtesthack ]; - postPatch = '' - sed -i -e '/--cov/d' -e '/--no-cov/d' setup.cfg - ''; - preCheck = '' export DETERMINISTIC_TESTS=true ''; diff --git a/pkgs/development/python-modules/virtualenv/default.nix b/pkgs/development/python-modules/virtualenv/default.nix index 126bf4e6c6c..a739ab2fd6c 100644 --- a/pkgs/development/python-modules/virtualenv/default.nix +++ b/pkgs/development/python-modules/virtualenv/default.nix @@ -23,11 +23,11 @@ buildPythonPackage rec { pname = "virtualenv"; - version = "20.13.2"; + version = "20.14.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-AfX4B0TSSjdDzmGFgSNIjpHLLdHTvfkq2vG7o5/97fA="; + sha256 = "sha256-jltAIDcocSboHM3pQyuVqL5bGdNlhPZJVwYKNIjBHKg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/waitress/default.nix b/pkgs/development/python-modules/waitress/default.nix index 71a482999cd..e2cbe59ab28 100644 --- a/pkgs/development/python-modules/waitress/default.nix +++ b/pkgs/development/python-modules/waitress/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "e2e60576cf14a1539da79f7b7ee1e79a71e64f366a0b47db54a15e971f57bb16"; + sha256 = "sha256-4uYFds8UoVOdp597fuHnmnHmTzZqC0fbVKFelx9XuxY="; }; doCheck = false; diff --git a/pkgs/development/python-modules/wallbox/default.nix b/pkgs/development/python-modules/wallbox/default.nix index a1136d89342..53ccd00a75f 100644 --- a/pkgs/development/python-modules/wallbox/default.nix +++ b/pkgs/development/python-modules/wallbox/default.nix @@ -2,22 +2,24 @@ , buildPythonPackage , pythonOlder , fetchPypi +, aenum , requests , simplejson }: buildPythonPackage rec { pname = "wallbox"; - version = "0.4.6"; + version = "0.4.8"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "651c61e2264258382d1f54c4f0bf6bcd198482a744d8f1db3dd73084c240d9bb"; + sha256 = "f8965b0ae3a873f570986e712a4e667d0b6634c9e3afb51fbd5596856412878c"; }; propagatedBuildInputs = [ + aenum requests simplejson ]; diff --git a/pkgs/development/python-modules/wasm/default.nix b/pkgs/development/python-modules/wasm/default.nix index f6c2cc42e38..adc3c958bee 100644 --- a/pkgs/development/python-modules/wasm/default.nix +++ b/pkgs/development/python-modules/wasm/default.nix @@ -1,5 +1,6 @@ { buildPythonPackage , fetchPypi +, pythonAtLeast , lib }: @@ -7,6 +8,8 @@ buildPythonPackage rec { pname = "wasm"; version = "1.2"; + disabled = pythonAtLeast "3.10"; # project is abandoned, remove we whe move to py310/311 + src = fetchPypi { inherit pname version; sha256 = "179xcinfc35xgk0bf9y58kwxzymzk7c1p58w6khmqfiqvb91j3r8"; diff --git a/pkgs/development/python-modules/watchdog/default.nix b/pkgs/development/python-modules/watchdog/default.nix index 1bc471c7287..9afd0f032fc 100644 --- a/pkgs/development/python-modules/watchdog/default.nix +++ b/pkgs/development/python-modules/watchdog/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "watchdog"; - version = "2.1.6"; + version = "2.1.7"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-o25132x2fL9G9hqRxws7pxgR36CspKMk2UB6Bqi3ouc="; + sha256 = "sha256-P9R4FTU76cRO68lMwo/iaysMW9iJ2vxKWny9+SQUNIA="; }; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices ]; diff --git a/pkgs/development/python-modules/watchgod/default.nix b/pkgs/development/python-modules/watchgod/default.nix index 5bb84258642..70e93f1a209 100644 --- a/pkgs/development/python-modules/watchgod/default.nix +++ b/pkgs/development/python-modules/watchgod/default.nix @@ -1,17 +1,22 @@ { lib , buildPythonPackage , fetchPypi +, anyio }: buildPythonPackage rec { pname = "watchgod"; - version = "0.7"; + version = "0.8.1"; src = fetchPypi { inherit pname version; - sha256 = "0aagm0n5fkpzdsfgl0r21gkz5qaicgq3f4rqz2fdvsgbn1i0s528"; + sha256 = "sha256-wS0V8999EedAcE5FOYJ3918dePRq1Zyp11Bb/YuNMIY="; }; + propagatedBuildInputs = [ + anyio + ]; + # no tests in release doCheck = false; diff --git a/pkgs/development/python-modules/websocket-client/default.nix b/pkgs/development/python-modules/websocket-client/default.nix index 37d926e5055..a1c0cfa82e1 100644 --- a/pkgs/development/python-modules/websocket-client/default.nix +++ b/pkgs/development/python-modules/websocket-client/default.nix @@ -4,20 +4,22 @@ , pythonOlder , pytestCheckHook , python-socks +, six }: buildPythonPackage rec { pname = "websocket-client"; - version = "1.3.1"; + version = "1.3.2"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-YninUGU5VBgoP4h958O+r7OqaNraXKy+SyFOjSbaSZs="; + sha256 = "sha256-ULIdsAWPepU9Z8wERb5LlI1/wZbsvrgIPWjZRijkq/Y="; }; propagatedBuildInputs = [ python-socks + six ]; checkInputs = [ diff --git a/pkgs/development/python-modules/webssh/default.nix b/pkgs/development/python-modules/webssh/default.nix index 49b7097549d..ff26a9f1711 100644 --- a/pkgs/development/python-modules/webssh/default.nix +++ b/pkgs/development/python-modules/webssh/default.nix @@ -29,6 +29,11 @@ buildPythonPackage rec { "webssh" ]; + disabledTests = [ + # Test fails with AttributeError (possibly related to paramiko update) + "test_app_with_bad_host_key" + ]; + meta = with lib; { description = "Web based SSH client"; homepage = "https://github.com/huashengdun/webssh/"; diff --git a/pkgs/development/python-modules/webthing/default.nix b/pkgs/development/python-modules/webthing/default.nix index 92e4ea5a8fb..aea123bc78c 100644 --- a/pkgs/development/python-modules/webthing/default.nix +++ b/pkgs/development/python-modules/webthing/default.nix @@ -4,6 +4,7 @@ , ifaddr , jsonschema , pyee +, pythonOlder , tornado , zeroconf }: @@ -11,12 +12,15 @@ buildPythonPackage rec { pname = "webthing"; version = "0.15.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "WebThingsIO"; repo = "webthing-python"; rev = "v${version}"; - sha256 = "06264rwchy4qmbn7lv7m00qg864y7aw3rngcqqcr9nvaqz4rb0fg"; + hash = "sha256-z4GVycdq25QZxuzZPLg6nhj0MAD1bHrsqph4yHgmRhg="; }; propagatedBuildInputs = [ @@ -27,9 +31,12 @@ buildPythonPackage rec { zeroconf ]; - # no tests are present + # No tests are present doCheck = false; - pythonImportsCheck = [ "webthing" ]; + + pythonImportsCheck = [ + "webthing" + ]; meta = with lib; { description = "Python implementation of a Web Thing server"; diff --git a/pkgs/development/python-modules/weconnect-mqtt/default.nix b/pkgs/development/python-modules/weconnect-mqtt/default.nix index 0bb0a8f7999..b49d6c35821 100644 --- a/pkgs/development/python-modules/weconnect-mqtt/default.nix +++ b/pkgs/development/python-modules/weconnect-mqtt/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "weconnect-mqtt"; - version = "0.30.2"; + version = "0.32.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "tillsteinbach"; repo = "WeConnect-mqtt"; rev = "v${version}"; - sha256 = "sha256-e8dDdtabEHQKNx3c63Ou3T3ygsj4763C9Pd8usFrSCE="; + sha256 = "sha256-XuWiWL3cszC8aM+CJcAk359VaBCZNUOu4mAfmbdpoGg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/weconnect/default.nix b/pkgs/development/python-modules/weconnect/default.nix index 096f1b0e99b..db3cc1b8f82 100644 --- a/pkgs/development/python-modules/weconnect/default.nix +++ b/pkgs/development/python-modules/weconnect/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "weconnect"; - version = "0.37.2"; + version = "0.38.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "tillsteinbach"; repo = "WeConnect-python"; rev = "v${version}"; - sha256 = "sha256-54T4L1MzF2rkKM0AXz+bPBdVL7Izdho6c3AVSXBho2E="; + sha256 = "sha256-n9MqJ+npdHYpQJ8m6V8Oop+VuQ3EOCRrfIlU5qAc/Y8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/werkzeug/default.nix b/pkgs/development/python-modules/werkzeug/default.nix index 63c3ad1b420..f961d0359db 100644 --- a/pkgs/development/python-modules/werkzeug/default.nix +++ b/pkgs/development/python-modules/werkzeug/default.nix @@ -5,6 +5,7 @@ , fetchPypi , watchdog , dataclasses +, ephemeral-port-reserve , pytest-timeout , pytest-xprocess , pytestCheckHook @@ -12,15 +13,15 @@ buildPythonPackage rec { pname = "werkzeug"; - version = "2.0.3"; + version = "2.1.0"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchPypi { pname = "Werkzeug"; inherit version; - sha256 = "sha256-uGP4/wV8UiFktgZ8niiwQRYbS+W6TQ2s7qpQoWOCLTw="; + sha256 = "sha256-m1VGaj6Z4TsfBoamYRfTm9qFqZIWbgp5rt/PNYYyj3o="; }; propagatedBuildInputs = lib.optionals (!stdenv.isDarwin) [ @@ -31,6 +32,7 @@ buildPythonPackage rec { ]; checkInputs = [ + ephemeral-port-reserve pytest-timeout pytest-xprocess pytestCheckHook @@ -40,6 +42,11 @@ buildPythonPackage rec { "test_get_machine_id" ]; + disabledTestPaths = [ + # ConnectionRefusedError: [Errno 111] Connection refused + "tests/test_serving.py" + ]; + pytestFlagsArray = [ # don't run tests that are marked with filterwarnings, they fail with # warnings._OptionError: unknown warning category: 'pytest.PytestUnraisableExceptionWarning' diff --git a/pkgs/development/python-modules/widgetsnbextension/default.nix b/pkgs/development/python-modules/widgetsnbextension/default.nix index 8f6cb6ad186..5b4f535563c 100644 --- a/pkgs/development/python-modules/widgetsnbextension/default.nix +++ b/pkgs/development/python-modules/widgetsnbextension/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "widgetsnbextension"; - version = "3.5.2"; + version = "3.6.0"; src = fetchPypi { inherit pname version; - sha256 = "e0731a60ba540cd19bbbefe771a9076dcd2dde90713a8f87f27f53f2d1db7727"; + sha256 = "sha256-6Ep6n8ubrz1XEG4YSnOJqPjrk1v3QaXrnWCqGMwCmoA="; }; propagatedBuildInputs = [ notebook ]; diff --git a/pkgs/development/python-modules/wsproto/default.nix b/pkgs/development/python-modules/wsproto/default.nix index 803ddd51d9f..bcc9428b460 100644 --- a/pkgs/development/python-modules/wsproto/default.nix +++ b/pkgs/development/python-modules/wsproto/default.nix @@ -1,30 +1,31 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder, isPy36 -, dataclasses +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , h11 -, pytest +, pytestCheckHook }: buildPythonPackage rec { pname = "wsproto"; version = "1.1.0"; - disabled = pythonOlder "3.6"; # python versions <3.6 + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; sha256 = "sha256-ouVr/Vx82DwTadg7X+zNbTd5i3SHKGbmJhbg7PERvag="; }; - propagatedBuildInputs = [ h11 ] ++ lib.optional isPy36 dataclasses; + propagatedBuildInputs = [ h11 ]; - checkInputs = [ pytest ]; + checkInputs = [ pytestCheckHook ]; - checkPhase = '' - py.test - ''; + pythonImportsCheck = [ "wsproto" ]; meta = with lib; { description = "Pure Python, pure state-machine WebSocket implementation"; homepage = "https://github.com/python-hyper/wsproto/"; license = licenses.mit; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/wxPython/4.1.nix b/pkgs/development/python-modules/wxPython/4.1.nix index 71f8b2847e3..e5942c17d4c 100644 --- a/pkgs/development/python-modules/wxPython/4.1.nix +++ b/pkgs/development/python-modules/wxPython/4.1.nix @@ -48,12 +48,14 @@ buildPythonPackage rec { doxygen wxGTK.gtk pkg-config + ] ++ lib.optionals stdenv.isLinux [ autoPatchelfHook ]; buildInputs = [ wxGTK.gtk ncurses + ] ++ lib.optionals stdenv.isLinux [ libXinerama libSM libXxf86vm diff --git a/pkgs/development/python-modules/yamlfix/default.nix b/pkgs/development/python-modules/yamlfix/default.nix index 7243b3891f4..b789aab0370 100644 --- a/pkgs/development/python-modules/yamlfix/default.nix +++ b/pkgs/development/python-modules/yamlfix/default.nix @@ -37,11 +37,6 @@ buildPythonPackage rec { --replace 'python_paths = "."' "" ''; - pytestFlagsArray = [ - "-n" - "$NIX_BUILD_CORES" - ]; - pythonImportsCheck = [ "yamlfix" ]; diff --git a/pkgs/development/python-modules/yanc/default.nix b/pkgs/development/python-modules/yanc/default.nix index 925276c0ad6..37e7d91a809 100644 --- a/pkgs/development/python-modules/yanc/default.nix +++ b/pkgs/development/python-modules/yanc/default.nix @@ -4,16 +4,16 @@ buildPythonPackage rec { pname = "yanc"; version = "0.3.3"; - # Tests fail on Python>=3.5. See: https://github.com/0compute/yanc/issues/10 - disabled = !(pythonOlder "3.5"); - - checkInputs = [ nose ]; - src = fetchPypi { inherit pname version; sha256 = "0z35bkk9phs40lf5061k1plhjdl5fskm0dmdikrsqi1bjihnxp8w"; }; + # Tests fail on Python>=3.5. See: https://github.com/0compute/yanc/issues/10 + doCheck = pythonOlder "3.5"; + + checkInputs = [ nose ]; + checkPhase = '' nosetests . ''; diff --git a/pkgs/development/python-modules/zarr/default.nix b/pkgs/development/python-modules/zarr/default.nix index c943f34c52e..972bd527ad0 100644 --- a/pkgs/development/python-modules/zarr/default.nix +++ b/pkgs/development/python-modules/zarr/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "zarr"; - version = "2.11.0"; + version = "2.11.1"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-sIc74nr1aQc4+hWOp6gC6uRUkEwzmVBWGFrMWnQltFE="; + sha256 = "sha256-EbYo9C3sNuAUeHnovUcVJLWbI4CUubIePDW+eDmcEV4="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/zetup/default.nix b/pkgs/development/python-modules/zetup/default.nix index c2e707347b3..41b5f05cfeb 100644 --- a/pkgs/development/python-modules/zetup/default.nix +++ b/pkgs/development/python-modules/zetup/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , nbconvert -, pathpy +, path , pytestCheckHook , setuptools-scm , pythonAtLeast @@ -33,7 +33,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ setuptools-scm ]; checkInputs = [ - pathpy + path nbconvert pytestCheckHook ]; diff --git a/pkgs/development/python-modules/zodb/default.nix b/pkgs/development/python-modules/zodb/default.nix index e4f1e403cd9..7c788f7a9f8 100644 --- a/pkgs/development/python-modules/zodb/default.nix +++ b/pkgs/development/python-modules/zodb/default.nix @@ -16,11 +16,11 @@ buildPythonPackage rec { pname = "ZODB"; - version = "5.6.0"; + version = "5.7.0"; src = fetchPypi { inherit pname version; - sha256 = "1zh7rd182l15swkbkm3ib0wgyn16xasdz2mzry8k4lwk6dagnm26"; + sha256 = "sha256-+kC7wF7NoewkNc0MbdAqE7dphGBVikYENm9qCmhAHNM="; }; # remove broken test diff --git a/pkgs/development/python-modules/zope_testing/default.nix b/pkgs/development/python-modules/zope_testing/default.nix index ea2d531f763..f8ea4e83b15 100644 --- a/pkgs/development/python-modules/zope_testing/default.nix +++ b/pkgs/development/python-modules/zope_testing/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "zope.testing"; - version = "4.9"; + version = "4.10"; src = fetchPypi { inherit pname version; - sha256 = "475cb847a7af9d547313ee93f5d0b8800bf627e6d0d9a51d11967984083cb54e"; + sha256 = "sha256-O25ZBsrd0UjCP+lY5qrj+tyKCKilP3R9l5HC2BNe5W4="; }; doCheck = !isPyPy; diff --git a/pkgs/development/python-modules/zopfli/default.nix b/pkgs/development/python-modules/zopfli/default.nix index 1bc880456b6..dc2b14bdc62 100644 --- a/pkgs/development/python-modules/zopfli/default.nix +++ b/pkgs/development/python-modules/zopfli/default.nix @@ -1,12 +1,14 @@ -{ lib, buildPythonPackage, fetchPypi, setuptools-scm, zopfli, pytest }: +{ lib, buildPythonPackage, fetchPypi, pythonOlder, setuptools-scm, zopfli, pytestCheckHook }: buildPythonPackage rec { pname = "zopfli"; - version = "0.2.0"; + version = "0.2.1"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-x9PzVcSR84TkNNsuYmheq269pmuWTonhdUuxFLLTjOo="; + sha256 = "1ipjkcgdbplsrhr31ypk48px8cax4cm9gcjj7yrcrhg20ql3s9p5"; extension = "zip"; }; @@ -15,8 +17,7 @@ buildPythonPackage rec { buildInputs = [ zopfli ]; USE_SYSTEM_ZOPFLI = "True"; - # doesn't work with pytestCheckHook - checkInputs = [ pytest ]; + checkInputs = [ pytestCheckHook ]; meta = with lib; { description = "cPython bindings for zopfli"; diff --git a/pkgs/development/python-modules/zulip/default.nix b/pkgs/development/python-modules/zulip/default.nix index 55f2180ebf4..fc0a49687e3 100644 --- a/pkgs/development/python-modules/zulip/default.nix +++ b/pkgs/development/python-modules/zulip/default.nix @@ -1,28 +1,27 @@ { lib , buildPythonPackage -, isPy3k +, pythonOlder , fetchFromGitHub , requests , matrix-client , distro , click -, cryptography -, pyopenssl +, typing-extensions , pytestCheckHook }: buildPythonPackage rec { pname = "zulip"; - version = "0.8.1"; + version = "0.8.2"; - disabled = !isPy3k; + disabled = pythonOlder "3.6"; # no sdist on PyPI src = fetchFromGitHub { owner = "zulip"; repo = "python-zulip-api"; rev = version; - sha256 = "sha256-vYeZEz8nuZYL1stHLa595IbhyNbqqxH4mx7ISbqRAlA="; + hash = "sha256-Z5WrV/RDQwdKUBF86M5/xWhXn3fGNqJtqO5PTd7s5ME="; }; sourceRoot = "${src.name}/zulip"; @@ -31,20 +30,13 @@ buildPythonPackage rec { matrix-client distro click - - # from requests[security] - cryptography - pyopenssl + typing-extensions ]; checkInputs = [ pytestCheckHook ]; - preCheck = '' - export COLUMNS=80 - ''; - pythonImportsCheck = [ "zulip" ]; meta = with lib; { diff --git a/pkgs/development/python2-modules/cryptography/default.nix b/pkgs/development/python2-modules/cryptography/default.nix index 357bb35dacf..0b4e2ae394c 100644 --- a/pkgs/development/python2-modules/cryptography/default.nix +++ b/pkgs/development/python2-modules/cryptography/default.nix @@ -1,10 +1,11 @@ -{ lib, stdenv +{ lib +, stdenv +, callPackage , buildPythonPackage , fetchPypi , isPy27 , ipaddress , openssl -, cryptography_vectors , darwin , packaging , six @@ -18,6 +19,9 @@ , enum34 }: +let + cryptography-vectors = callPackage ./vectors.nix { }; +in buildPythonPackage rec { pname = "cryptography"; version = "3.3.2"; # Also update the hash in vectors-3.3.nix @@ -36,18 +40,19 @@ buildPythonPackage rec { ]; buildInputs = [ openssl ] - ++ lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security; + ++ lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security; propagatedBuildInputs = [ packaging six ] ++ lib.optionals (!isPyPy) [ cffi ] ++ lib.optionals isPy27 [ - ipaddress enum34 + ipaddress + enum34 ]; checkInputs = [ - cryptography_vectors + cryptography-vectors hypothesis iso8601 pretend diff --git a/pkgs/development/python2-modules/cryptography-vectors/default.nix b/pkgs/development/python2-modules/cryptography/vectors.nix index f9b7c525237..4d6214807e7 100644 --- a/pkgs/development/python2-modules/cryptography-vectors/default.nix +++ b/pkgs/development/python2-modules/cryptography/vectors.nix @@ -1,12 +1,13 @@ { buildPythonPackage, fetchPypi, lib, cryptography }: buildPythonPackage rec { - pname = "cryptography_vectors"; + pname = "cryptography-vectors"; # The test vectors must have the same version as the cryptography package: version = cryptography.version; src = fetchPypi { - inherit pname version; + pname = "cryptography_vectors"; + inherit version; sha256 = "1yhaps0f3h2yjb6lmz953z1l1d84y9swk4k3gj9nqyk4vbx5m7cc"; }; diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index e8da5771d4e..a4bb9dac14d 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -29,6 +29,7 @@ in with self; { BSgenome_Btaurus_UCSC_bosTau6_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6.masked"; version="1.3.99"; sha256="07isv0lcvlsl0aha1p474l0pps0j7bsh455m33vfxwahivqsfy27"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau6]; }; BSgenome_Btaurus_UCSC_bosTau8 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau8"; version="1.4.2"; sha256="16wjy1aw9nvx03r7w8yh5w7sw3pn8i9nczd0n0728l6nnyqxlsz6"; depends=[BSgenome]; }; BSgenome_Btaurus_UCSC_bosTau9 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau9"; version="1.4.2"; sha256="0vx9z101faybqqdqfk306m7m3j490svmx7bn7knh5if66g0mzi7g"; depends=[BSgenome]; }; + BSgenome_Btaurus_UCSC_bosTau9_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau9.masked"; version="1.4.4"; sha256="04wzhrp0kb8mv7dg732daqr58djs5dwjm54hgmzbaafv1715i74k"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau9]; }; BSgenome_Carietinum_NCBI_v1 = derive2 { name="BSgenome.Carietinum.NCBI.v1"; version="1.0.0"; sha256="1asyyb1p1bzc7dv9s2igjxrf9f144vvz2xbv9qxg15w9qzzx7r33"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce10 = derive2 { name="BSgenome.Celegans.UCSC.ce10"; version="1.4.0"; sha256="1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"; depends=[BSgenome]; }; BSgenome_Celegans_UCSC_ce11 = derive2 { name="BSgenome.Celegans.UCSC.ce11"; version="1.4.2"; sha256="0d4bxfglpqiv1f0n6imdgz101g9383hfj3ra91268wryzlm0yk5w"; depends=[BSgenome]; }; @@ -330,7 +331,7 @@ in with self; { excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; fly_db0 = derive2 { name="fly.db0"; version="3.14.0"; sha256="0jk5k5zpr4r9yn2l7vpb01xdmhi0pm3jg333jr7rv0c6fzjq5279"; depends=[AnnotationDbi]; }; - geneplast_data = derive2 { name="geneplast.data"; version="0.99.5"; sha256="0bwhc20jkjs3n1n4xv7xmkgjzf6ghssvbsmx3dm347smk54wgjsw"; depends=[]; }; + geneplast_data = derive2 { name="geneplast.data"; version="0.99.6"; sha256="1vq2l828d25lsmmac6079vip8bbvqhiyr1x58s467cwcl1mgayrk"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; }; diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 5974766e04b..a9538155788 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -153,7 +153,7 @@ in with self; { QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.24.0"; sha256="1iamvkpj5gij2x7j3fixgn3djgly684wrvr888w9cfir6wf5pk94"; depends=[QDNAseq]; }; QUBICdata = derive2 { name="QUBICdata"; version="1.22.0"; sha256="15saydq9vv1lvqgvv5d51km52aqzwjx7q7ijpka6why442lrys9r"; depends=[]; }; RGMQLlib = derive2 { name="RGMQLlib"; version="1.14.0"; sha256="0l317dma9cnwhr24k65lhs26n1511chiq8fp0xx4bnxzvw3q7g5b"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.18.0"; sha256="0jpw3lsm7npwn44j7ydi2630qmkjymm1hm2hv73gfk464zr40xf4"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.18.1"; sha256="1dx743cjhi9713sa0ndvk5w8m8p0zxbp9xdw1ssincgqyv1n02qb"; depends=[]; }; RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; @@ -200,7 +200,7 @@ in with self; { TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.0"; sha256="08zmlvycq3jz1zy0715x9f21nf3465c51k7w2jq12sfbap36pmjm"; depends=[]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.1"; sha256="0h8k8bq64c9l70li2jzjmwillxsdmp06f3kikzxhys0xhdkcaanm"; depends=[]; }; TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.14.0"; sha256="09ccilwf4kvwgaglk5ar5b6c7pyh3b21r0vg6ibb57ilbv85srqd"; depends=[Biobase]; }; TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.14.0"; sha256="0njs301kfbchhcy4i8ldlpv7z9lsj4hm1ivb4w2r75qkaalmgi7s"; depends=[Biobase]; }; TENxBUSData = derive2 { name="TENxBUSData"; version="1.8.0"; sha256="1smvgqym0jd5m3as8pjyl9dhnfbh02sdh2sxb2hr89133fh6mx6a"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; @@ -394,7 +394,7 @@ in with self; { stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.0"; sha256="09p653i4drnfjvx3kd20f4jg7lw1254f44qknl3ghiqppa6rz9g9"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.2"; sha256="1hkmgj6dzrn2wnpasl418hxzv9ym0007swg9ayjjy6i4w0q1mvs3"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 965b3d50471..15089b4cb43 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -14,7 +14,7 @@ in with self; { ADAM = derive2 { name="ADAM"; version="1.10.0"; sha256="18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; ADAMgui = derive2 { name="ADAMgui"; version="1.10.0"; sha256="0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; ADImpute = derive2 { name="ADImpute"; version="1.4.0"; sha256="1bkq1hd8sqg9r28r70a9vd3gb2nsmg6dybf002d621p88cdfjib2"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.34.0"; sha256="0a01wds33i2h2whigznbrxq38irlxm20qpwix33x6vlxbjgrckal"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.34.0"; sha256="0a01wds33i2h2whigznbrxq38irlxm20qpwix33x6vlxbjgrckal"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; AGDEX = derive2 { name="AGDEX"; version="1.42.0"; sha256="0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"; depends=[Biobase GSEABase]; }; AIMS = derive2 { name="AIMS"; version="1.26.0"; sha256="1jsvyddv4cy3a53agprqkpfv1a7p384d462675k73dh8paid90nq"; depends=[Biobase e1071]; }; ALDEx2 = derive2 { name="ALDEx2"; version="1.26.0"; sha256="1k57ifczqj47r8v2m08kmqr4vsrc5vsh7zs18vspvd6xd0qd03xf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; @@ -32,7 +32,7 @@ in with self; { ASSIGN = derive2 { name="ASSIGN"; version="1.30.0"; sha256="0j8kvn5pq29wqjdcsq6smawdvxb7ccam3m5z223mkwww24m92qyw"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; ASpediaFI = derive2 { name="ASpediaFI"; version="1.8.0"; sha256="0q33ir3chlix9qvw9drjrwzckk5s1vkj7gfdsffrslxsyl0nizx7"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; ASpli = derive2 { name="ASpli"; version="2.4.0"; sha256="0548p8k3a379qqw7d80rbc7hm1g9bx4vmadxm0gmjph9akx56f3h"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.18.0"; sha256="0i1i3bfkp1xsjdl1nd56mlh66qz3aasd1hp09d4i31njz2f9znwn"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.18.1"; sha256="1jmlialnhs9df1hv6l4qk2c4qjyjbz9mdj8vr52ms8vlxlxplz6c"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; AUCell = derive2 { name="AUCell"; version="1.16.0"; sha256="1lclf8hkhrm6g5fp8yhvjxnwgf8p0j9ffxsmcybz4rjvmwkiz5dp"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; AWFisher = derive2 { name="AWFisher"; version="1.8.0"; sha256="1i9niknq2bnhwjdvl4f5hmdhg0p5vn9p6b6bb8fanfsijq0cn37p"; depends=[edgeR limma]; }; AffiXcan = derive2 { name="AffiXcan"; version="1.12.0"; sha256="06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; @@ -42,7 +42,7 @@ in with self; { AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; - AnVIL = derive2 { name="AnVIL"; version="1.6.5"; sha256="0ipf3916xwmg22kmc0qk7x8sw3bb6579cffmdwsizr1mw84cdjwd"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; + AnVIL = derive2 { name="AnVIL"; version="1.6.7"; sha256="0sy3338vg6g9rsc8ixh1l51xkjcyzxk2mcdw7xxxi6bpcg3zhqv9"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; @@ -88,10 +88,10 @@ in with self; { BayesSpace = derive2 { name="BayesSpace"; version="1.4.1"; sha256="1nif6d4hb9zpfx9lczs6j6xniiv0spq6s39jvrs1qazdyysmf4qy"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; }; BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.20.1"; sha256="0mrw7fwjx8k0a5c3iw2j94h1yn5pkvqil7fbzih9xiafnpbn374m"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; BiFET = derive2 { name="BiFET"; version="1.14.0"; sha256="0vidypvphnj76g4ra5ijrgqx2dnzw0fmvdvz35gsqswrr3k20jkk"; depends=[GenomicRanges poibin]; }; BiGGR = derive2 { name="BiGGR"; version="1.30.0"; sha256="1g01666wwznk148776s4vr1hfi3dfl448dhgk4d1qy2wv6sxh9kr"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.26.2"; sha256="114qljg6yqx55yi0w5nmhdz9260dzkj73bjgqh8w9kpfvcb0439l"; depends=[igraph Matrix slam tsne]; }; + BiRewire = derive2 { name="BiRewire"; version="3.26.5"; sha256="041i5d08bsc5jqx3309fixjacizs4yi992cwazxghm8mrk3kicbr"; depends=[igraph Matrix Rtsne slam]; }; BiSeq = derive2 { name="BiSeq"; version="1.34.0"; sha256="05namdzj196rzjg3wqvamj3xpn039dbfhfpmc6p8ifxn9c9dnd3c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; BicARE = derive2 { name="BicARE"; version="1.52.0"; sha256="1g8vrsc05cysb36gsw8sfmr6dgbh4aji37vcq9qwkmkv3jgvnlf6"; depends=[Biobase GSEABase multtest]; }; BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.0.0"; sha256="0mvl2mh2px315ilfmf9ax5qjz3282l56qm1a0v142bb7cxld13v7"; depends=[GenomicRanges ggforce ggplot2 matrixStats rtracklayer S4Vectors tidyr]; }; @@ -147,7 +147,7 @@ in with self; { CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.48.0"; sha256="1zz4iaxyf5b03xalq58idnkrwcpsvh8zlz6hlxz487caw7c8xx6p"; depends=[Biobase CGHbase CGHcall]; }; CGHregions = derive2 { name="CGHregions"; version="1.52.0"; sha256="1g337b6fjmbbkpn9pw20z6bvacrlfh582n6lss3qw0s6x6w5cygs"; depends=[Biobase CGHbase]; }; CHRONOS = derive2 { name="CHRONOS"; version="1.22.0"; sha256="18fdvbdbl0rms1fs27yi6lvf3xnn3pjfm1qngaaz4c06v207mg9w"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.2.0"; sha256="0d2sglrp8ansh8nibbqyg3pvhaaw33q5mzci382pwky05mpy9sjk"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; + CIMICE = derive2 { name="CIMICE"; version="1.2.1"; sha256="1np9wp7phlhvhk58v853iz55i5jhkc75kw5xnyz8zjc30gb5nz9k"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; CINdex = derive2 { name="CINdex"; version="1.22.0"; sha256="0a73rdhmsprbbq69yvnnhgp86wic255yxrj82k1i1k62f3bsi74c"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; CMA = derive2 { name="CMA"; version="1.52.0"; sha256="09w0wj2mars83rfws8k6fpfgkbyp7fw97zfcf6d8lbsza639f3cm"; depends=[Biobase]; }; CNAnorm = derive2 { name="CNAnorm"; version="1.40.0"; sha256="0nrkqycsssrrsf8h2w2wgi4lfyjlqakjx1iacb754pp2jfsr2nl2"; depends=[DNAcopy]; }; @@ -242,7 +242,7 @@ in with self; { DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.14.0"; sha256="0qbmw70rqmfixrbnb2jzvvqi54j2rl6gy1bspb143gsadh8z2s9i"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; DEFormats = derive2 { name="DEFormats"; version="1.22.0"; sha256="0c9ajkrjzw3rdnfnjj7xn9pdsykdzn230mi01138srrkvcpra856"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; DEGraph = derive2 { name="DEGraph"; version="1.46.0"; sha256="1p8zzx8vbzhxnpvd7cbr4g1r87lys41cx4n60rkx53c0pqlnabsn"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.30.0"; sha256="0zmqz8gvpbka5cnwxx7w00xjaxlhmrni1lvacnippy63lpl2w4sz"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGreport = derive2 { name="DEGreport"; version="1.30.3"; sha256="08g0ldj4867jsw2h1368pcirvcbdz5w9pbz3pgyxjg9mdbnllaka"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; DEGseq = derive2 { name="DEGseq"; version="1.48.0"; sha256="1bx6xj71k7126ckpr1b7dh1ndmb9yvp9wrrr8lyfcq5birgpf22n"; depends=[qvalue]; }; DEP = derive2 { name="DEP"; version="1.16.0"; sha256="122gxaslxl3q66ncqndkmnjf6kx2gkj880cf2khwivh58sg6y410"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; DEScan2 = derive2 { name="DEScan2"; version="1.14.1"; sha256="017pxb1z1vflxcqbhc1vrdxw146rb50zgxzalpmh0njzc333v3j1"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; @@ -274,7 +274,7 @@ in with self; { DeMixT = derive2 { name="DeMixT"; version="1.10.0"; sha256="0x3kjcn0878w36rqd808ca1iicv4dki1f8066s3ry7806dhcxiln"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.36.0"; sha256="1ax9lx5qg4k5c1mv35bhpfh9q8dbfbv4rf4y1vy994qxmnq4rwsv"; depends=[ggplot2 limSolve pcaMethods]; }; DeepBlueR = derive2 { name="DeepBlueR"; version="1.20.0"; sha256="16sdsvmp54k6zj1xcxmq0pdpm91q9ff11p3c83ii30brshj69bhi"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.2.1"; sha256="0ic9v6ikpb4r51j39f54z3va5ybcpd7i11xigwgb85wp3ri3nkvw"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.2.2"; sha256="1daxagyhcf6ma4r504ypr4gpfjzrbmp1x57r0siccrpgqc1ds817"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; DegNorm = derive2 { name="DegNorm"; version="1.4.0"; sha256="0f3vpynm5g83lpja5xg9nvpssyj6lh5cw9syg242j3mlrjim9bif"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; DelayedArray = derive2 { name="DelayedArray"; version="0.20.0"; sha256="1cm6zh01mvhiq7zrik7q3dmgxinyjz1nyg6rfj93kpkvcb5d4wpj"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.10.0"; sha256="1vifbqka5k1rmimqcpl6218ragr9dq9rzxizx9nff5ilsva21f9b"; depends=[BiocGenerics DelayedArray S4Vectors]; }; @@ -306,7 +306,7 @@ in with self; { EGSEA = derive2 { name="EGSEA"; version="1.22.0"; sha256="17q0cjvkrqhmzcgvip4mkdz02aa9rm3svfv2s689fhz2kmwljca8"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; ELMER = derive2 { name="ELMER"; version="2.18.0"; sha256="0kn5yr9yf49kcipjn4z7bcpzj74kcfkhb8q9cfnx659xnksfb27d"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; EMDomics = derive2 { name="EMDomics"; version="2.24.0"; sha256="0rf83brhzdqsnwg3vlby0a4kf8khv2g7rmxkk31r44apkyspzapl"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.30.01"; sha256="14p1imjqylqwfap662w94mss0f8gl4z2laz8mhhxz5gk1xym5i9n"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ENmix = derive2 { name="ENmix"; version="1.30.03"; sha256="1mqfvvdrmwc4qcrb6826sq9yr244p3x6vrcw523ybcs0qvzw25yg"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; ERSSA = derive2 { name="ERSSA"; version="1.12.0"; sha256="11lak418vmswi9mz4h97pxb68m7ihqbg6z93bvnakka65w997ki8"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="02kfcj2wldqfrkrlwss5k5vb5mgi37jrp2c3kx556k25xkzh19vq"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.22.0"; sha256="0yra1mp1iz4rh6dvlxv0i0f1ibqgl9giz3r4csg5l0wxz60fbxzm"; depends=[]; }; @@ -352,7 +352,7 @@ in with self; { GDCRNATools = derive2 { name="GDCRNATools"; version="1.14.0"; sha256="1h0gfi6mhr5kzwhqxkzgxz12abkn7svnbbzga70pp7az8m8vxmnn"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; GDSArray = derive2 { name="GDSArray"; version="1.14.1"; sha256="0v8kxy7xfhgghz4qg2djc4nxh2w3bk48b0cx1jx7lc45hm2qsdfx"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; GEM = derive2 { name="GEM"; version="1.20.0"; sha256="19jars2vajfgy2v9xrgp45gc2yn2hq31d9ikdpnkd9gvpqm99nkv"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.24.1"; sha256="10b72yy6bx9alw8zr9rz22wgkqm1m6b2lr1flrf80mvxjihfy7as"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENESIS = derive2 { name="GENESIS"; version="2.24.2"; sha256="13xjn9a0njpm6w0i2ikkjsp77ykdaigf5x5d39g6qqdj2rc2pz7w"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; GENIE3 = derive2 { name="GENIE3"; version="1.16.0"; sha256="0ms769267pimrx3xwwkgjy03qilkxxs7xwhzfca01f65i4n3l6fw"; depends=[dplyr reshape2]; }; GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; @@ -407,7 +407,7 @@ in with self; { GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.50.0"; sha256="0bkhadr61i9jsfwp3i3clz4b0yjdav8rnnrmfplh86sq700y58v5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.38.0"; sha256="1nq6n4bp3ydgpjbsgg3222dd345l5z5yp4mvs4haps6wlc6bin4i"; depends=[Biobase limma MASS]; }; GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="1.6.1"; sha256="1kcl87bjjy933z8xkqc3nx5yy6b89f62iaf7p6hc69z4vw5xrydf"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneTonic = derive2 { name="GeneTonic"; version="1.6.4"; sha256="1qj12jpd5q95lf0fwq26ykpnw6kjp54pdnbh0ipgn37fl9v5vbcx"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; }; GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.1"; sha256="1ly851w6xy144qvmpdv7p64yc45bqxmvny2rzgz691h3qbin3x55"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.30.0"; sha256="1jwksis94mk8bmdggk0w3kvxqwp4di6x78xgsjk6ij54710adyq9"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; @@ -418,12 +418,12 @@ in with self; { GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.1"; sha256="133r27wsdyppjv9kq0d2xamx007lkf416nnlaygs4hs3a76p9xwx"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.6.0"; sha256="18fzi2qi95851ci7qrzwpb7v6fhwp6xi1d1vk11xbygpbvql5mls"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.6.1"; sha256="17v2v7aklljy17nivwmani2jxkbffqs2yr38hlspjlvgpidpf9ln"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.2.1"; sha256="08z1h70j82s405q0hqahb4n580ibqaqml7skq0p4w8rgchrvbs7q"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; GenomicTuples = derive2 { name="GenomicTuples"; version="1.28.0"; sha256="15rv41z4mxj8nn1mkvs73warygd1cmwi9m7lshgld1wf6zk43ypl"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; GeoDiff = derive2 { name="GeoDiff"; version="1.0.0"; sha256="0ci1x5q8k6rjarciasg72j0ngrv79ya2j8plhgjck41v8g10mbi0"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; GeomxTools = derive2 { name="GeomxTools"; version="2.0.0"; sha256="0pzad7m77aib9pa0p37sa2wcmlcydy5nvz4xiax11szjc0y4ay7f"; depends=[Biobase BiocGenerics data_table dplyr EnvStats lmerTest NanoStringNCTools outliers readxl reshape2 rjson S4Vectors]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.10.0"; sha256="0cybhqzw403vm0w6wimdjb8k0fvfgig53g83k5v9m3i3wp8vk0pz"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.10.2"; sha256="0hdbfsjn3xfmaprhq3vz78hwshp1dgvvmbrs8n76dnsvh8bxwsgx"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; Glimma = derive2 { name="Glimma"; version="2.4.0"; sha256="0qkbx9n2vb7kvb5f00csnbffy5bm7hhbdvkx2isgzi0wv0y59kx9"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; GlobalAncova = derive2 { name="GlobalAncova"; version="4.12.0"; sha256="12r62a67k3p85lcs8mffai3bzrxq52vm3blgvia3by16nids42d0"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; GmicR = derive2 { name="GmicR"; version="1.8.0"; sha256="18rfbdljfc6hl4p9c66j36j0yg19fp8nhv4gny6f8qa9x3n172sd"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; @@ -494,7 +494,7 @@ in with self; { IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.16.0"; sha256="18x08rfxvqf1g7haidbzmlg5zd22w8140rhba5jzxpcyx8mcz6h7"; depends=[FGNet igraph knitr]; }; IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.12.0"; sha256="0z2aw2ldar3qq7ddza0k87gksix1j829j76arqyg4w2w0yp9r2q6"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.10.0"; sha256="0mbfm2v8hhmff3yix9znvb6fbjwlgf76bgjyzx000dvpnp7pjrz7"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.30.0"; sha256="0970w1g6na4iwqcyml2b9amx816n05n78ara1qrxvdx6swxw3r8s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.30.0"; sha256="0970w1g6na4iwqcyml2b9amx816n05n78ara1qrxvdx6swxw3r8s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; }; IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.16.0"; sha256="14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; KBoost = derive2 { name="KBoost"; version="1.2.0"; sha256="1c4l5lwiarm6l6nbqcw85sf16am3x06a1wfsfcm91pchkdl1jx08"; depends=[]; }; KCsmart = derive2 { name="KCsmart"; version="2.52.0"; sha256="17glg0m4c5k5ridr3k25r4wpwsp1bsl51lgi270sl590rbj2634n"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; @@ -535,6 +535,7 @@ in with self; { MBASED = derive2 { name="MBASED"; version="1.28.0"; sha256="11rbsaki3nbzil2p8fv7b7biykb60398ayq8sc8drqpiam15myy7"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; MBAmethyl = derive2 { name="MBAmethyl"; version="1.28.0"; sha256="1jkvx523spv55qrikg26xc2r9qb72y7kfa161ha6jjm8l57rb6bv"; depends=[]; }; MBCB = derive2 { name="MBCB"; version="1.48.0"; sha256="06idlf8s0a59q45rckflxi5m3i7rgn8lphzyw2fgajvv4df5j7q3"; depends=[preprocessCore tcltk2]; }; + MBQN = derive2 { name="MBQN"; version="2.6.2"; sha256="1wzpa45nxn8z96q6f08h8h5c77nfbwapxb494nrk1gdpszcqsq7l"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; MBttest = derive2 { name="MBttest"; version="1.22.0"; sha256="115bkavx4pqy7sh70m5jmghk784f4cqm6z91z5s44m8c00a58vnp"; depends=[gplots gtools]; }; MCbiclust = derive2 { name="MCbiclust"; version="1.18.0"; sha256="1sswmmdkxw41pzqzqxs8rq581jx1wprcmafagnn4n39h2mw00wwy"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; MDTS = derive2 { name="MDTS"; version="1.14.0"; sha256="124ixdshragwgnr4rz5qii2j0j74ybm5h8y3k2h1kba56632ff1s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; @@ -554,7 +555,7 @@ in with self; { MLSeq = derive2 { name="MLSeq"; version="2.12.0"; sha256="0z722cbbvkkfpzli47n9dhyj3n02gibffy1l06imwvzxcvahcfyj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; MMAPPR2 = derive2 { name="MMAPPR2"; version="1.8.0"; sha256="1fl8dmbxr407f0vzv4q3jpaia28igzqxjb6azbck7zgn64wh5i3c"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; MMDiff2 = derive2 { name="MMDiff2"; version="1.22.0"; sha256="1a74q87mlf1pvgy47gyncllsdz460iyk1nrh4m75jywhbxjf36z0"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.8.1"; sha256="161s7505hyacn9632yaq8a0arqac1g11vbz4awjrhqjlma12c9m1"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.8.2"; sha256="1bdcg7mcnpj5n26klc6s2gvind5wdh8ic96glpq6cjgcayaqbd9a"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; MODA = derive2 { name="MODA"; version="1.20.0"; sha256="00v40gsp1x5gbjg4ilnsjq1j512lwl3sbhqmavyxs20i8c8xjcqf"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; MOFA2 = derive2 { name="MOFA2"; version="1.4.0"; sha256="0vl2ffvh9nsdgw94yavkdkkhihpcb8fdbn3f19aygmwbfg78j3w9"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; MOGAMUN = derive2 { name="MOGAMUN"; version="1.4.0"; sha256="0jq863ql6ydykrbriw5h6ibinchkhsgxq8908gyg5f5jl2sgc8pc"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; @@ -582,7 +583,7 @@ in with self; { Maaslin2 = derive2 { name="Maaslin2"; version="1.8.0"; sha256="08zncj3ywc5pcywi3zgqvvlmqgp9j165b3vrkipvwv15b647jqvp"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; MantelCorr = derive2 { name="MantelCorr"; version="1.64.0"; sha256="10n1f04088wzki7mw27zwlahv6mmkwjjljkj0g65az5arki02rbl"; depends=[]; }; MassArray = derive2 { name="MassArray"; version="1.46.0"; sha256="1m3a0h5jmjifm16z9l37rij00jka0k22qryq0lmhvfmidzvn7pbf"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.0"; sha256="1icqyxkx5a9y3wahkxpxngw85c7l4hih1ym9nwwn9qy93pnw1zi4"; depends=[waveslim]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.1"; sha256="00irq3i5kfck7rnm8ll7rqhqfpp3bisv2h8is50a7wbd7480z7ij"; depends=[waveslim]; }; MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.6.0"; sha256="1s75p8rrmj24r0vcbaiyw8xg8y84j388mv6iawai7pypfcl8s1z3"; depends=[matrixStats]; }; MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.2"; sha256="1czw4v7dyggk6dkhvqsx01wd5rp9rds3h4g9dbycgb9gz5qmza0h"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; MatrixRider = derive2 { name="MatrixRider"; version="1.26.0"; sha256="0mv0w3m7waqfm8gy39hmdn00p6cq0a0ndr01scfg1js29jm6sgc2"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; @@ -629,7 +630,7 @@ in with self; { MultiBaC = derive2 { name="MultiBaC"; version="1.4.0"; sha256="0pwg6zmrfqrzra1r6ai68ya5fjf6dy2sl035xnxl617iii96jada"; depends=[ggplot2 Matrix MultiAssayExperiment plotrix ropls]; }; MultiDataSet = derive2 { name="MultiDataSet"; version="1.22.0"; sha256="17asldnxqvp3sijx7nbi2lbbgnq4iq8z72qlg9080sm5lga1yy1s"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; MultiMed = derive2 { name="MultiMed"; version="2.16.0"; sha256="1dkvvrvjfc04ad48zywbrmbvm1lcnni6rvvl9gdax11y9lz19341"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.3"; sha256="04lv8yqpjwa6p9n6jpd9mpnnn0r1yv8b6rig6w1zgmhi31cigz7j"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.4"; sha256="00skqhqkh6fbxifqf8dkc79vyizha4cqpwzyb3h6w7v3yzs6bd7x"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.1"; sha256="0i6fq6736gvrqn45r7nrhl0ns45qwj1bl4yc6qlalw2g46mjxf6k"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; NADfinder = derive2 { name="NADfinder"; version="1.18.0"; sha256="0glcjxgydj2k7h4963fl465y398xqvq4g393ainvwcgz77kx4sk0"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; NBAMSeq = derive2 { name="NBAMSeq"; version="1.10.0"; sha256="1him4qg3xmgisl3jsws690ciknvj2876xn8n9gxc8l08cihfminf"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; @@ -748,7 +749,7 @@ in with self; { RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; }; RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCy3 = derive2 { name="RCy3"; version="2.14.1"; sha256="1avfplsg0pl6naxbwvwl3r29idq57r6vpiqnhbzfvj28hra4gdqi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCy3 = derive2 { name="RCy3"; version="2.14.2"; sha256="13yjr01svgz36g5irr8jg1c3zpwwb9q424qj75k8nrf2zrz72l7w"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; }; REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; @@ -845,11 +846,11 @@ in with self; { RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.8.1"; sha256="0lpx0dp5570kbrq7v0g573axkhi00qrf38si59vmvnqxhmkvsixn"; depends=[Matrix]; }; + Rsubread = derive2 { name="Rsubread"; version="2.8.2"; sha256="078zcchw9xl6vs2wihzzji349vq0m1a039m86jdlvb7nc3i1imfk"; depends=[Matrix]; }; Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.32.3"; sha256="0wp29v41f9cf6khq2ww0f63nsq6219l1ycajzdqp3a2xda734ncw"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.0"; sha256="08jhqpi13kg69nfl425m6rvgyvzfspfylgnzkk1v6v0kaz5876f2"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.32.4"; sha256="17dvypxcwp8c7ih23hi2366110by6zq1mjgxkmlbiklzachg9780"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.1"; sha256="1fyhscqvhmpwd7zykj7mglk6liq6nccmic741mds5hqlx8zxhy7d"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; }; @@ -894,7 +895,7 @@ in with self; { SRAdb = derive2 { name="SRAdb"; version="1.56.0"; sha256="18z62c2w6spsmnyqcmc57w41vli5vrcrl3hpy1al1n1yy9fgil0y"; depends=[GEOquery graph RCurl RSQLite]; }; STAN = derive2 { name="STAN"; version="2.22.0"; sha256="1inqjw11a791c6svw0y4p3m8rd09fjcna3j4p5950f975aph1q4g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; STATegRa = derive2 { name="STATegRa"; version="1.30.0"; sha256="10a230bvfjvjwsjkh0v3fjbrjkwcvsdch8bfv1s6h4yav1m4wca7"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.6.1"; sha256="14yn0fi6ghlv41z5vk4wvrx51hlpx7z9k5fk5jyb50l2g8wwzjhi"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.6.5"; sha256="0n2r2zc2sx1a2a8wqqxz6z7i4ynaj18iwbwgif7469n13agji5mv"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; STROMA4 = derive2 { name="STROMA4"; version="1.18.0"; sha256="10v8kgmx79zd2vgzwij3il80l724sdl0k4a3rm73kd4jw2wvhkrh"; depends=[Biobase BiocParallel cluster matrixStats]; }; SWATH2stats = derive2 { name="SWATH2stats"; version="1.24.0"; sha256="0ifl1y3rs0r2zqkpcpiibyv12mjqz6wxs296f691k1qfz9qvx8kg"; depends=[biomaRt data_table ggplot2 reshape2]; }; SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.48.0"; sha256="1xxz5ggxj10psrz5rm0xjr8mxwc3cfyl9chsa9w2wxrrixypdnah"; depends=[]; }; @@ -949,7 +950,7 @@ in with self; { TCC = derive2 { name="TCC"; version="1.34.0"; sha256="0298zfvrs7x6050s3222fg5yp60siz85pfh6541wmah7j0wzpgsd"; depends=[baySeq DESeq2 edgeR ROC]; }; TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.22.4"; sha256="071wz6dm6dypbfzvxd6j67l1iawlb6d5sfzq871zh06fzaxjm332"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.20.0"; sha256="0941xcd42kz72vlhlm93681dwgi4afli5j8cfs331fpddpv7l4af"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.14.0"; sha256="0gjmgz20hmy8c7igy5xvwql37k0v7662qkxwsc2vi01x6y781bcj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.14.1"; sha256="1i8cl01l9qnpvbirxka5raaa8xp88wwn6914cqsq3qz44ji4gi79"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; TCseq = derive2 { name="TCseq"; version="1.18.0"; sha256="1kzz3fl19d1ivb6l55xadwg202vq4wza3r7wgf6fx196s20vnvng"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; TDARACNE = derive2 { name="TDARACNE"; version="1.44.0"; sha256="0rjlwj05fw0y4q02lhvdg0blpqrgxjq5kdq0hff94qjwp7fgn5gn"; depends=[Biobase GenKern Rgraphviz]; }; TEQC = derive2 { name="TEQC"; version="4.16.0"; sha256="08jllnzsfz0zkn2m8n5c6cppjbh5cm8kpgwq652bgw5jmkkpg3f2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; @@ -961,7 +962,7 @@ in with self; { TIN = derive2 { name="TIN"; version="1.26.0"; sha256="07m8q3lgcflmrchpw88y4w62iwq5cxd0sw1lbassvgych7dnq3ks"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.8.2"; sha256="1j0a3ll0mkp0jgw8hfl8xs5yj4baqjxfvg09zb8sh82jim1my77z"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TOAST = derive2 { name="TOAST"; version="1.8.3"; sha256="13vdkygyz0qiwyniz4ahydpfkj6k1ap91hsnkzr6ym765cpdan01"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; TPP = derive2 { name="TPP"; version="3.22.1"; sha256="0vr8sv22rhhrv63arz33vbkp5i3cwd03bz54qwx3zbdcf5l3snhy"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; @@ -1105,7 +1106,7 @@ in with self; { biomformat = derive2 { name="biomformat"; version="1.22.0"; sha256="0xf99j4lhf8kh9h1317hrbzxdv6rljs1fn68r8s40x6y4db3l817"; depends=[jsonlite Matrix plyr rhdf5]; }; biomvRCNS = derive2 { name="biomvRCNS"; version="1.34.0"; sha256="01nhjhfyzs67p97bk9bjqdxk239ckl8sgfj55azk1zmw92aw2hfy"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; biosigner = derive2 { name="biosigner"; version="1.22.0"; sha256="189018qahyw33dmg73wa7k4rp8nzrx6ai8f2dr6vhbpcdc1gnm0z"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; - biotmle = derive2 { name="biotmle"; version="1.18.0"; sha256="0p3iavf9059qa8qvfvqzskfc5gki3z0ivkkqdwg5anvf0wv2k47g"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biotmle = derive2 { name="biotmle"; version="1.18.0"; sha256="0p3iavf9059qa8qvfvqzskfc5gki3z0ivkkqdwg5anvf0wv2k47g"; depends=[assertthat BiocGenerics BiocParallel dplyr ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; biovizBase = derive2 { name="biovizBase"; version="1.42.0"; sha256="0kg71p7sqfvxal0c19zrws1ffaqgyi8p605l3z6mkq5ldi26pajz"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; biscuiteer = derive2 { name="biscuiteer"; version="1.8.0"; sha256="16ds322b21g8ys5c3lkrvi70i82f9rxvnknbiqx4sp6f2l01j5yj"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; blacksheepr = derive2 { name="blacksheepr"; version="1.8.0"; sha256="0j623s9vjxknqx3p3d2nbwiqqjp1326bbyvqjm75n1iyj33z1844"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; @@ -1126,7 +1127,7 @@ in with self; { caOmicsV = derive2 { name="caOmicsV"; version="1.24.0"; sha256="0snr67g9bqwyvrr1gxmgdjhrybgcpl38dwik583752sgdyf84c6p"; depends=[bc3net igraph]; }; cageminer = derive2 { name="cageminer"; version="1.0.0"; sha256="140w8ccm5j5kl3gyn6437a2zqlzf5277k3g3c9i22n1jkdp947yn"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; calm = derive2 { name="calm"; version="1.8.0"; sha256="1sq78fv4s6ja9yw84k20zl10pbkk8g2kf38p6nbxkhi4rvz8b5r2"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.28.02"; sha256="00h8jklisp1vapqz8z4l4qk2273p2n33f0sfrgc6gpraiypvqr10"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + canceR = derive2 { name="canceR"; version="1.28.04"; sha256="0si885h0nkfzvy3snhsp7638fdzc66l90hswd0va42d3ahq8hr8v"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tkrplot]; }; cancerclass = derive2 { name="cancerclass"; version="1.38.0"; sha256="1kp764g9jms7r95wh58c4d1yli7xfvhfvi50x2s8rzi4bhi3zik6"; depends=[binom Biobase]; }; casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; @@ -1144,7 +1145,7 @@ in with self; { cellity = derive2 { name="cellity"; version="1.22.0"; sha256="18nivw8c2iv6ibp6hj2m0f04qb28dcq3ya1imfwsvanm9qb2z8zr"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; cellmigRation = derive2 { name="cellmigRation"; version="1.2.0"; sha256="0wwfp4jffdxjhzpjpa9136i7ji7bkgbmkdrc4k058kwncv65iajp"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; cellscape = derive2 { name="cellscape"; version="1.18.0"; sha256="1p8ib244yxfzl5xswl1ifhj7grc8435npw82kmj5vqg8mqbkhgh7"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - censcyt = derive2 { name="censcyt"; version="1.2.0"; sha256="0yrkv3122iniqgfsp8hhglndpklhlvr2d1f661ghn73dhwbabmww"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + censcyt = derive2 { name="censcyt"; version="1.2.1"; sha256="0sd412jhhgax0szslks8bmg81yrqs3hj54ahdgsnbqf846kccrzw"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; cfDNAPro = derive2 { name="cfDNAPro"; version="1.0.0"; sha256="0klzwax2wblcq8j51ig7qkxml7yb3qc2p66g2ds8sfai0y3hslf9"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; cghMCR = derive2 { name="cghMCR"; version="1.52.0"; sha256="1j3pdj1c5wpl0mmirbssysval6fh2vyfb4d6w6jkqikchbcal8pk"; depends=[BiocGenerics CNTools DNAcopy limma]; }; chimeraviz = derive2 { name="chimeraviz"; version="1.20.0"; sha256="0gsd2bwjzh6f8gqclnhm8gq2q3c1ddp4qqflmbgfk16jja8516va"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; @@ -1228,7 +1229,7 @@ in with self; { daMA = derive2 { name="daMA"; version="1.66.0"; sha256="0m7192md5956mbklw0j7z0b82inr6h0p2c9vvjsmd5ivlbz1zdri"; depends=[MASS]; }; dada2 = derive2 { name="dada2"; version="1.22.0"; sha256="1mj2fiqanr8lp1883bali00la38d9g1krqz9v7f396s1f5x8yll6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; dagLogo = derive2 { name="dagLogo"; version="1.32.0"; sha256="1gqb56zg11cl7ldww15zmn09f1f5i60mshwrv7gsb3yc79zs48s1"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.4.2"; sha256="1c0kz52wwz7b8fxgzj7drs8mqr5r2cl25n58rralqb7mgn926v62"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dasper = derive2 { name="dasper"; version="1.4.3"; sha256="0rry987mmwrrg15wm5vwmwds2dk6vqpvayvkhzgw2zm5gabis27n"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; dcGSA = derive2 { name="dcGSA"; version="1.22.0"; sha256="0j697q02zys9brmc7xn1yh7lir7k1m7hlr752ykydqx9qzzw0m77"; depends=[BiocParallel Matrix]; }; dcanr = derive2 { name="dcanr"; version="1.10.0"; sha256="0xrfdwcs4qxgasm318nd2cdqmr9ksaxig1frs8h6a7lg8wvh5f2x"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; dce = derive2 { name="dce"; version="1.2.0"; sha256="0wzi9hv975ib7nvd6qqnlhzfzgx9wydxxs1pkklzzgwlwm4gr971"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; @@ -1236,12 +1237,12 @@ in with self; { ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.22.4"; sha256="0wrwyq7kz8qqhgg2pjif8hz53ci33r6fgzwpsdxywds1arv54yb2"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + debrowser = derive2 { name="debrowser"; version="1.22.5"; sha256="1aqjnq13yvgw0rjq90l7kgf8c56fhjxhv7r3g1xa5pbdqzfdbv99"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; deconvR = derive2 { name="deconvR"; version="1.0.1"; sha256="1ibp59d0q8bax7rphg140jb5ylkhmaa4lmc0khqffq440j9fnrr5"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.0.0"; sha256="0a9jxhfa2qfafvc35vqky8dfqhpl5vw6zmm1q5gq26bc58pswqar"; depends=[AUCell broom dplyr fgsea GSVA magrittr Matrix purrr ranger rlang RobustRankAggreg rpart speedglm stringr SummarizedExperiment tibble tidyr tidyselect viper withr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.0.1"; sha256="0d4jl94598rxzw4y0qs2g4c67dhlsnlzj01qqcmi156am3a13pkr"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; deepSNV = derive2 { name="deepSNV"; version="1.40.0"; sha256="1wi6j6yb6i9fs9yszfywqz3w50mhl85dkfmr4w3phwvkf0xkn81w"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.8.0"; sha256="1gfh788xxamsf919bznwl1n5ycd81bcxw4mxcsib46fqmzxgh7vh"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; deltaGseg = derive2 { name="deltaGseg"; version="1.34.0"; sha256="090bkkd0sxkjxnparn7jyi59rk18vd3nid2sw66malvc4zx0b22y"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; @@ -1281,11 +1282,11 @@ in with self; { eegc = derive2 { name="eegc"; version="1.20.0"; sha256="0x35z9nwylb3jq56w31z9zb2q6b52fqk0sb70l3axqamb8yym0lc"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; eiR = derive2 { name="eiR"; version="1.34.0"; sha256="1dppl1x5s0apz7djdi3qzdv8i0q7iqh6q9dcxx1g0hfn2v945jfn"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; eisaR = derive2 { name="eisaR"; version="1.6.0"; sha256="1gfcmxdbzpb8rfdk7c1y7jhqanipa6jyxy2cg6f9jsp9x73fs61w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.0"; sha256="1v8zgp33kabf5qjf7aklb1lbzsvlh1jv30g0f79djf2i9khcxlkm"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.1"; sha256="080cfazmj13mcymfrcajfmwrj6jq0nkhf4qqv12nb3vchd8dbvjk"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; enrichplot = derive2 { name="enrichplot"; version="1.14.2"; sha256="1rjiqmc32c9gxckgrgbypxpp0m8y0kahvhzvjzymda25xp8zqjs2"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.18.3"; sha256="0rbd8ycvl1aydbd8xcbkhgqxqkrflymgah3wm6nx76csapbzh4q9"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.1"; sha256="1g38psw45g4yvwilj47ka8xbbmjmna2rdabjfjjal47x9p0yf01a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.18.4"; sha256="1nsdcsghhh3ikv0hbn1aazdam7a6pqf1p6rz68ll2h6965kl4qzp"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; @@ -1381,7 +1382,7 @@ in with self; { geneXtendeR = derive2 { name="geneXtendeR"; version="1.20.0"; sha256="03vfb2si6wwn2ilqpiwacmbd3fj2lgzx71jf19sk7ypmnwld3zgc"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; genefilter = derive2 { name="genefilter"; version="1.76.0"; sha256="05ba33m99dg414lasn36mjmkd9lvrxgpamy1qj2zvi31i9vkq6y2"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; genefu = derive2 { name="genefu"; version="2.26.0"; sha256="0l9a20fncrifrmfawsx3azaxvs2v2i41xifgk6zi6dfyj1k4h3sk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.20.0"; sha256="13gfxsc3i2c25h51sx46lsaivy78vy8mbj9frh5kqc2i6lwrcmpi"; depends=[ape data_table igraph snow]; }; + geneplast = derive2 { name="geneplast"; version="1.20.1"; sha256="00ajcyxwqpkl40bq42493r7mrcvmq3nx7a1kg080vkjyskqf40m0"; depends=[ape data_table igraph snow]; }; geneplotter = derive2 { name="geneplotter"; version="1.72.0"; sha256="1b7ngp9l00vrymx3d3nsda546s7p4ifr90idn3x2v4ilf38rfhp8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; genoCN = derive2 { name="genoCN"; version="1.46.0"; sha256="159hrdlyc6gh5j3qmrq2s1xpbyd29ahlggr7ccr0wlcl1m9zjfgm"; depends=[]; }; genomation = derive2 { name="genomation"; version="1.26.0"; sha256="0ynwsrlnp98iyz4bl2s7plin0k9iy9zix4jy4v38lcqg6n4iz00j"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; @@ -1402,7 +1403,7 @@ in with self; { ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.2"; sha256="0c7kf0a5hr63y9w6f09z8dfd3apbhx6i6cd31fvl1wiy977pn2ly"; depends=[ggnewscale ggplot2 ggtree rlang]; }; girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 sparsebnUtils stringr SummarizedExperiment survminer]; }; globalSeq = derive2 { name="globalSeq"; version="1.22.0"; sha256="16l9pa6siahmfl8k6m0s2cch5jfqz4pcx4xzqi8gsqn9szy6f6jq"; depends=[]; }; globaltest = derive2 { name="globaltest"; version="5.48.0"; sha256="0wpd1b0wcwkhixd6qkaw0j3y94d5b4aabgz2gq0r72k84jbaxb9f"; depends=[annotate AnnotationDbi Biobase survival]; }; gmapR = derive2 { name="gmapR"; version="1.36.0"; sha256="0vyw54ijfydb9mvp0znvk850na1iw51higjm3wx69l8jny9l8w60"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; @@ -1427,7 +1428,7 @@ in with self; { gwasurvivr = derive2 { name="gwasurvivr"; version="1.12.0"; sha256="1q31ydns5i8jk4p4731i57f80iwx6qm0r9fka4xd4wdxzk5kps8z"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; h5vc = derive2 { name="h5vc"; version="2.28.0"; sha256="0i4p122cavihc29javrgg5ywqn1fkg73hp46hfj3v2qmwakihk4w"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; hapFabia = derive2 { name="hapFabia"; version="1.36.0"; sha256="0niwlfy2ljsx1ivdxrpm0f8w75bs03xb2l43dkcm5gclwac2ys1v"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.2.2"; sha256="0jdn93r48id24n8ha2yn2d256mz446j6hfvn0dz0y1kniff154cc"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; + hca = derive2 { name="hca"; version="1.2.3"; sha256="1raj7z4n1hrfvb18ml3ywnxzidc4ay9ixb74gh0d8m8ps662r701"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; heatmaps = derive2 { name="heatmaps"; version="1.18.0"; sha256="11fi0kzqx6ihvvwc852xhj34xv4aik0zyv47ad4zbhvb1mvxqv8a"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; hiAnnotator = derive2 { name="hiAnnotator"; version="1.28.0"; sha256="1hjgn9gszr38q9syjl9qqw3lml5falp08asn01mq4h1m53akwxxv"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.30.0"; sha256="02y6gy9h841aag0v88j1g0hw0ckd4zd3agjgvzi9mcmb76zhxz8k"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; @@ -1563,7 +1564,7 @@ in with self; { methylclock = derive2 { name="methylclock"; version="1.0.1"; sha256="00j1crflmpk02xxs0gfidrd04s8gaw3l1hiqs7qj522j13ks1q45"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; methylumi = derive2 { name="methylumi"; version="2.40.1"; sha256="1lfcsv8k9c4ndfwlbdk3vd7fq58100bfijyxklna41zf8m8kkkka"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.16.0"; sha256="1a672zd33bdg0pa490pxrr0jp8vnmnkngb3x12jsqqq56p4dzpjb"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mfa = derive2 { name="mfa"; version="1.16.3"; sha256="0jpnwxzm6iyqcbi6lf89w7xi4gmgi0fhb7rln6g0s81jarqxggib"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; mgsa = derive2 { name="mgsa"; version="1.42.0"; sha256="02yc49w9yccvhq6iwf09kfb7hkq35aswxymcrkf4j54q7mqhiflc"; depends=[gplots]; }; miQC = derive2 { name="miQC"; version="1.2.0"; sha256="1a9f6w3j3w2wwqgl2hnl2jrrzycnzwhjv2cds2xk6lakz6x7h9hd"; depends=[flexmix ggplot2 SingleCellExperiment]; }; miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.18.0"; sha256="07snnvgnmxj0w0f9400vcqgchbfvhmqlh3wrk4wqacqc0ldcxb7a"; depends=[]; }; @@ -1626,7 +1627,7 @@ in with self; { multiscan = derive2 { name="multiscan"; version="1.54.0"; sha256="0qjh302hpld7zdrfqkbx8a5hrp3bwfn539pv36mwizjigjznnsi9"; depends=[Biobase]; }; multtest = derive2 { name="multtest"; version="2.50.0"; sha256="03z71r7g318nwwgiz0k8qwbhghw1hhdhh1an4qnb0nc62c5x9kns"; depends=[Biobase BiocGenerics MASS survival]; }; mumosa = derive2 { name="mumosa"; version="1.2.0"; sha256="093mzbkx7sf5gg5qcvyzgkfzzdpjm8pd6hb7dwavcjxf90y14l1h"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.8.1"; sha256="0dpzid0zxcyb395yaz4gbgqlv7ngfxw1i5rfybp6cf37cfrk4m70"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscat = derive2 { name="muscat"; version="1.8.2"; sha256="1dlzr1swv0mfaj1kj5m0plvmh72djfwqkl1517r0kf74xj6hab7k"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; muscle = derive2 { name="muscle"; version="3.36.0"; sha256="0a081ay0360h0r9731d145prdg15d1g96s7zzcn411qa8fwg7rv0"; depends=[Biostrings]; }; musicatk = derive2 { name="musicatk"; version="1.4.0"; sha256="168578fg6gmg48gwd6944ln30g75nyq16yzyjw175yanj09g9qfs"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; mygene = derive2 { name="mygene"; version="1.30.0"; sha256="1s9hlcj9g2a3q2aa3ahjk3j2ksk4v9mpax1cxm739gywaf4sbknp"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; @@ -1698,7 +1699,7 @@ in with self; { pathview = derive2 { name="pathview"; version="1.34.0"; sha256="1jdl81lvrsz03b1nws90nssf2clipipzaqvwm1pq57mvshnlnkjr"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; pathwayPCA = derive2 { name="pathwayPCA"; version="1.10.0"; sha256="01m2g8icx7gq4fpxxxm356wr8wc5dmq3lnvr1s5dj1qqm4hk70xr"; depends=[lars survival]; }; paxtoolsr = derive2 { name="paxtoolsr"; version="1.28.0"; sha256="0c72fp6nisv6j0rkzw4yip3f94wq990nkmaw3h7lv5r5gpj9b69x"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.1"; sha256="1ada0prp16yq21cvrgy19i570y6lsn2ph1s79vmmbw4q4i6xgcwx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.2"; sha256="1ayixqyds0ma3ph66i3456jfl5bf528vkwi3ja792av5qsn701jx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; pcaMethods = derive2 { name="pcaMethods"; version="1.86.0"; sha256="1fj2v6sna4lbw7ar9h93y2g4pzylqqp7760ih425gcai7s19xdrg"; depends=[Biobase BiocGenerics MASS Rcpp]; }; pcxn = derive2 { name="pcxn"; version="2.16.0"; sha256="1n61gn1k74k61rrfp340kjchafrfmfidslkqxdr0ijbacbp017qw"; depends=[pcxnData pheatmap]; }; pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.58.0"; sha256="1vk0kppsg9vynwzflkv3frv16hsl43lpk9awr6x22a1frmpndj10"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; @@ -1710,12 +1711,13 @@ in with self; { periodicDNA = derive2 { name="periodicDNA"; version="1.4.0"; sha256="1v6rl234qs0la2r7qwiahslw7yr8mppcdcpand2lk8w862k67nda"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; pgca = derive2 { name="pgca"; version="1.18.0"; sha256="1wrp4k0b1sj75yhw799aqcb6dmimza6gvcxkn5ayfn6x3hfifwwl"; depends=[]; }; phantasus = derive2 { name="phantasus"; version="1.14.0"; sha256="0p8xa0jqasgn61qzzva7wrjk8d2xcsn9kd20c4dbc61sg3cxrcir"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phemd = derive2 { name="phemd"; version="1.10.0"; sha256="1n3xvw9x3600pwv2wk7mbgal0lr6zpkwziy0whlkdkxzbgy9xzaw"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; phenoTest = derive2 { name="phenoTest"; version="1.42.0"; sha256="0ci44hwicvz32sgv6mywawyygd1wzz2bayx6rshwvpmz1mixncq6"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; phenopath = derive2 { name="phenopath"; version="1.18.0"; sha256="1c0cxm3cwxprjkkwimzgjz0h67dykx2jy7jin13h7vzpwwvphh2p"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; philr = derive2 { name="philr"; version="1.20.1"; sha256="1ra7wnnn0blxvxvsa570cf6jiqd9fh0ki90j2vbckrzh33z6plyv"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.18.0"; sha256="0qbls06h7fkqsg8yhnc8dmbqhkgxxxa29j3h7cwxdq4nvg66frjl"; depends=[matrixStats plyr]; }; phyloseq = derive2 { name="phyloseq"; version="1.38.0"; sha256="0k0aj8f7g1vr7l0qcc507b3w67zc1k9x7sdblm7mjb20zqr3916s"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.10.0"; sha256="13nnysbr2ljh0r303aja797bjxppksc6ac0qms8qy8nkn155gcw3"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + piano = derive2 { name="piano"; version="2.10.1"; sha256="0x4d7p273mh6pw2gi5rlv493j9kzpzbzkzgwl82snsqab4ljdg2r"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; pickgene = derive2 { name="pickgene"; version="1.66.0"; sha256="0l5gk659gxh7i0sq3j1dg1v69p108ig84d735dv3x8mf9bq1mfhk"; depends=[MASS]; }; pipeComp = derive2 { name="pipeComp"; version="1.4.0"; sha256="1r61m3468b4v3vw60yywgxs4r4w1lr55wgwndll6wfh62pzgvrf2"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; pipeFrame = derive2 { name="pipeFrame"; version="1.10.0"; sha256="0463z7kyaar474yfa05j754df49yasl3qmsfxz0qb3y1d7p37grr"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; @@ -1725,12 +1727,12 @@ in with self; { plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.0.15"; sha256="0gwvxvfcvcank7dny901kr74a3n52l16bf9lmas660ydhfn7g4x0"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.0.17"; sha256="0jlmakxvwsm1gyhkyncdiipljidf0ymab2illj0gpiwaij9fhd67"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; podkat = derive2 { name="podkat"; version="1.26.0"; sha256="0xj0cvw5wj29qfdjs25gawxm2fpbd1dypga54j0fi7nzp94y8ydr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.14.0"; sha256="0chvlasp42j63hjv7s9swas9m91wkl264wng2r7461pa5kq9x2pp"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + pogos = derive2 { name="pogos"; version="1.14.1"; sha256="0h4h5j7mv50zg0sm2hzcpwpdj6738crr1szjj13zkh828p7khd55"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; polyester = derive2 { name="polyester"; version="1.30.0"; sha256="0399jal3f2f4bxfxclx54rxxs8azvm63whjiqwrnkq0s3n7wd08y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; powerTCR = derive2 { name="powerTCR"; version="1.14.0"; sha256="0c7crgiwpizynl1bd4i5si96kw7cffnnhsbz4w44a3wd1d6ibk4g"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; ppcseq = derive2 { name="ppcseq"; version="1.2.0"; sha256="1rjqyq31lm54apznp3ymk8mm3vcyq4yxz026awy3dh4s53nzsv0a"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; @@ -1753,16 +1755,16 @@ in with self; { progeny = derive2 { name="progeny"; version="1.16.0"; sha256="0zhr5i5v87akzqjb6wid67nhg2icrw6w0awdy87x848c6c1i6j9y"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; projectR = derive2 { name="projectR"; version="1.10.0"; sha256="1ny6fdjqc4smd2b7s5zknm0m8mi1wrapcbzlj4n8d1mhd1xxms0d"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; proteinProfiles = derive2 { name="proteinProfiles"; version="1.34.0"; sha256="049q579x3m1sw0l5n22ldsrdkmcx61j8jlabq8kydwdhr6d9mbli"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.20.1"; sha256="1ycsazxm3ghjwawsxjyk5jm1m7nrk03y77x1lfzyqy87s1vzfy9i"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psichomics = derive2 { name="psichomics"; version="1.20.2"; sha256="1dlxgrlqrkippiw577r94phlh6i029kpgd9sps2qi3d0n4hmlfx9"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; psygenet2r = derive2 { name="psygenet2r"; version="1.26.0"; sha256="1fs2ljshqfyq4hnlm882fc0vd7x4sif5k3qlliqbxai6k5sdh3li"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; ptairMS = derive2 { name="ptairMS"; version="1.2.0"; sha256="1y6wpg85058migpgyankns5v84jv4fk8n7raxxfryn85bqsn0ida"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - pulsedSilac = derive2 { name="pulsedSilac"; version="1.8.0"; sha256="0k2rq76bxg9cq6vjvwwx51hph6s0z1xmka62x6hv19qwakc64qnn"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment taRifx UpSetR]; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.8.0"; sha256="0k2rq76bxg9cq6vjvwwx51hph6s0z1xmka62x6hv19qwakc64qnn"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; }; puma = derive2 { name="puma"; version="3.36.0"; sha256="0li5xxvvf1346ilc6ksg0w9ri2r2w9l7cm0d7i3s2y3bai7g36ka"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; pvac = derive2 { name="pvac"; version="1.42.0"; sha256="0zic1p12nn6yb5spkz01wr6c15cq7ilhhb2xxkxj0fsw1qalfgnb"; depends=[affy Biobase]; }; pvca = derive2 { name="pvca"; version="1.34.0"; sha256="12d4rc29qj8sf3y3j3gfnihs7gy7gq3hnlb1ivzsqqw8rwk53cyg"; depends=[Biobase lme4 Matrix vsn]; }; pwOmics = derive2 { name="pwOmics"; version="1.26.0"; sha256="1r38hbkyai2cf9izljp8sr2mx9ql6bznnfm9gra6kmnhlz0lrw1c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; pwrEWAS = derive2 { name="pwrEWAS"; version="1.8.0"; sha256="08z5phrwvpc3xaw7vzq4jam2aaba8i6vb46zm420fby7lxrc2bbx"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.12.0"; sha256="03v1q13xxnbi3r43b4y5psfmcpavnvx2ccr8r0gd6hfhx4wg98a2"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.12.1"; sha256="0r1pvvlvccbsc1srim98ahsd7wg9sinnkh8mwbkkm53442r3p7fm"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; qckitfastq = derive2 { name="qckitfastq"; version="1.10.0"; sha256="177agr9q2rjdk67kc2nv6idnqqk2aq595yc83r8pq6h2wp2ynmn0"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; qcmetrics = derive2 { name="qcmetrics"; version="1.32.0"; sha256="1wfc8v1z77wpqfslls8vkw9vi51ylnr8ssr6lm8xz1jd9zijf9ny"; depends=[Biobase knitr pander S4Vectors xtable]; }; qpcrNorm = derive2 { name="qpcrNorm"; version="1.52.0"; sha256="0zbp5kd6lm1qg9xzg9mibcqm7r3ap9gz7fhaf07ls5q1zk63cdj9"; depends=[affy Biobase limma]; }; @@ -1802,7 +1804,7 @@ in with self; { reconsi = derive2 { name="reconsi"; version="1.6.0"; sha256="0djiq9l70wvicbqia14n1bbd9c7ykvsyrp0r2arw2b2pqh8281fh"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; recount = derive2 { name="recount"; version="1.20.0"; sha256="1maa0fi6dqkcsjlbm52gl0r37qcv951xrc6m4rc6fvp6cb83x68p"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.4.2"; sha256="11z8ssn7s5mgb92jcr6jcw2rxja8kdddv7bwrqhgns2qkgj52n6w"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.4.5"; sha256="1pmrdjiz57ig4rgbn0kkkpls26pfjc4hmx6cpczywqipdyrv6aha"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; regionReport = derive2 { name="regionReport"; version="1.28.1"; sha256="03d7nbfsk55mrlhzzr81mx3ndswkfj7fajyh1yz4jakjdclvzlxm"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; regioneR = derive2 { name="regioneR"; version="1.26.1"; sha256="0k500fdmv5l0v7b9pj73bjk3h9k261mfqi6vl52khlw0fafn9b6p"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; @@ -1813,7 +1815,7 @@ in with self; { rfPred = derive2 { name="rfPred"; version="1.32.0"; sha256="12ppidpn8piw1w450nm35qxzfgyki4ihvp7cri8qk9gipvd3kq9z"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; rfaRm = derive2 { name="rfaRm"; version="1.6.0"; sha256="095p3nsax57m74j4dj7klpwkl8w2326c9yhc8s0c236kwyszz9rv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; rgsepd = derive2 { name="rgsepd"; version="1.26.0"; sha256="149065kmlzdzb9bjwm7x5y3l5j1y7qxzh8xz5liicz5rc4s7pb4i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.38.0"; sha256="13zm993l3i9f98gqdpxgsrzf9fgqppx2ajvrl0i3f7cvpifcgxqg"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.38.1"; sha256="1mlwp7bblhbpmd90sxj02zpq1q3fyg8v7ankyjb1y284xaymp02y"; depends=[rhdf5filters Rhdf5lib]; }; rhdf5client = derive2 { name="rhdf5client"; version="1.16.0"; sha256="1pbgjhcqilr1kzx3a5m4113p6alcr30z1mdd33qqllcarnc0pf4n"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; }; riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; @@ -1824,7 +1826,7 @@ in with self; { rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.24.0"; sha256="0asx51fxg9hc0brbqlxl0jyfyidh4fbwyclrvczzzqasf277f23w"; depends=[RColorBrewer]; }; roar = derive2 { name="roar"; version="1.30.0"; sha256="0hqh4vsnxl2sn1bf6s6wxl2nskb40rhvrysdvb6dr60zkih3g347"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.22.0"; sha256="08asfjl6smdg05m41m0bdc2awiqbhyb016z9f77adx3vc73mh613"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + rols = derive2 { name="rols"; version="2.22.1"; sha256="1qam4aajg2sp8xii3rkarq5qjxdncy4mp6n5pinmm1iwynlsv217"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; ropls = derive2 { name="ropls"; version="1.26.4"; sha256="19f3wd55860x959h5n7mrivyjdas5b3jmx74lf24xnx23g26f8rn"; depends=[Biobase MultiDataSet]; }; rpx = derive2 { name="rpx"; version="2.2.2"; sha256="05qgfchg4pyff0xqrnycxzpan0w5ry1f9w30irhpjiglp7ggf882"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; rqt = derive2 { name="rqt"; version="1.20.0"; sha256="0v2bm774y2ikwppp0w0ydqzak96ax7ga1d303vgll13xan50d391"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; @@ -1840,7 +1842,7 @@ in with self; { sagenhaft = derive2 { name="sagenhaft"; version="1.64.0"; sha256="110xg6kagap9795saxmh1dl77r4c2gzmk49rvqjlwqvbifnn4mvw"; depends=[SparseM]; }; sampleClassifier = derive2 { name="sampleClassifier"; version="1.18.0"; sha256="1plsyjjbjrjq1mydv19lsv0alq98vr2132c3m9j0w4akvs7zcv6q"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.4.0"; sha256="14bmz98rhpnkdqxkq67qvzkyld1a56h3y8kvjnhz5hzw8q1aihyd"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.30.0"; sha256="0j0hzpcsz9z04yf6jp26xscp62slgx4i4i33f6s1ajbgx00sq70n"; depends=[Biostrings shiny]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.30.1"; sha256="0anrwj63s0rd9dz6iiq6mvzp1jv5zqadjwrhc1cypvz57zf8ja02"; depends=[Biostrings shiny]; }; sarks = derive2 { name="sarks"; version="1.6.0"; sha256="026px0b7cbfvf7zqcm2p1y00hna1wgpyfr4bkirwrbmskb7f32lp"; depends=[binom Biostrings cluster IRanges rJava]; }; satuRn = derive2 { name="satuRn"; version="1.2.0"; sha256="1i2prsjxf6h0ynkcx4g1sj0mpb3v9rm6hwb9ppha2p86ffqxvrjn"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; savR = derive2 { name="savR"; version="1.32.0"; sha256="0dwl94j5dm5ngn8lyyc4bd9ihd1nqincvq26najjn6lw0x55ciky"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; @@ -1859,7 +1861,7 @@ in with self; { scMAGeCK = derive2 { name="scMAGeCK"; version="1.6.0"; sha256="1vx90l5d010dp6snasvaymlh16w5law19shdz0fhg3ngkc1v9jg0"; depends=[ggplot2 Seurat]; }; scMerge = derive2 { name="scMerge"; version="1.10.0"; sha256="031wlfilcagl3mq14yqybz2z7r0l420p5v8f128f841lmhqclg55"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; scPCA = derive2 { name="scPCA"; version="1.8.0"; sha256="1qgb03c446yv1zkzgiin05vlj7njlz3krvwj183s9y43d95mfny1"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.16.0"; sha256="0ckl6crm5rx53dlbbx0b4bfkllr5krai2bnxq5r5yqffv9p7n6mi"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scPipe = derive2 { name="scPipe"; version="1.16.1"; sha256="0anw36azfp4adsxdl3c58jmgvmvjv0vrcgp2bq90wnxky9xipmna"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; scReClassify = derive2 { name="scReClassify"; version="1.0.0"; sha256="0v2cz8h18p3q6a437db1z1ca85j7yrpz9sg7418q2hdv74wd645c"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; scRecover = derive2 { name="scRecover"; version="1.10.0"; sha256="0x8hlbjhf9jfin075sikc7gpl9qbpppcvhy3rd4cgy1nzq6dqwq1"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; scRepertoire = derive2 { name="scRepertoire"; version="1.4.0"; sha256="17il73lv0pxbqaza21i0fg5zh2v3jf7n30nwngi1jqics4l5ahsl"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; @@ -1896,8 +1898,8 @@ in with self; { seqPattern = derive2 { name="seqPattern"; version="1.26.0"; sha256="1mik575qaxw9h9qyjn971207pfgbc8p1mx60jrb20jbrrihgg2na"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; seqTools = derive2 { name="seqTools"; version="1.28.0"; sha256="1m8pxyq11bq4wz3w4n4ls5wf9ws2b7pazazv1d6icrrr9z3278ma"; depends=[zlibbioc]; }; seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; - seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.14.1"; sha256="1ja286qz7m15k97ms7rm81l0picsjjpm7fmsdpbklc66y3syl089"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + seqcombo = derive2 { name="seqcombo"; version="1.16.1"; sha256="18iixqj84b4ldg8q0dj8fivxrgqzba6qnj9zin9dhsyfqg5wz6z0"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.14.2"; sha256="1l3fxskqwh5am1zxyz3l95whlw8wdylagx9n7fvlrfs4lfqbzphr"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; sesame = derive2 { name="sesame"; version="1.12.9"; sha256="0sqmykp5nc87ixhf330bhz0vh28si3c6kfvr8rrfhhf3jvy34a2k"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; @@ -1929,7 +1931,7 @@ in with self; { snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; - sparrow = derive2 { name="sparrow"; version="1.0.1"; sha256="1i0dzj5wnphfhxdl6gmwf3qy8x9v5vb7c35mkq5xml6miwl3x5ha"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparrow = derive2 { name="sparrow"; version="1.0.3"; sha256="0mlsbicas04l3c1bhvnqnprjnlqzd6h61k7n3j51bkahrds33nbf"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; }; sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; }; @@ -1972,9 +1974,9 @@ in with self; { switchBox = derive2 { name="switchBox"; version="1.30.0"; sha256="09z9wi8yzjq49rjmn707a1kvf7c203lbxcnc7znwhy7lv51svj67"; depends=[gplots pROC]; }; switchde = derive2 { name="switchde"; version="1.20.0"; sha256="1n815zwj5znddgc3pz87089q8bvb14n2g61zfang8d8pna4zbf7v"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.2.8"; sha256="07fjam0c6j5ga75601vsbp4x1x8h31gxwxanwjxmixnv7md0pdms"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.2.10"; sha256="0nc2c8y3msffl8ghp60wmvwnjahxg9w5xfmrpx36r7z81ggdqs9d"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.0.5"; sha256="1j91pyfjsqngxxlxjqc477pznlfax4vayrks2q12rxw76ija80hf"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.0.6"; sha256="0l9m74cz5qf1hcr6f2jng7kd9vc3ppkpjgxh7gla8x0y329q0znz"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; @@ -2070,7 +2072,6 @@ in with self; { GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; broken = true; }; HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; broken = true; }; - MBQN = derive2 { name="MBQN"; version="2.5.0"; sha256="01pf9wkk3dsxgx1y8mxfxn9m2j2hqipc5kajm7w8g60bj9flg09j"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; @@ -2085,5 +2086,4 @@ in with self; { methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; - phemd = derive2 { name="phemd"; version="1.9.0"; sha256="0hqivlc9hzcfcprng1499nas84fwvgisg8976vsjciyn903355jr"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index ee3f719fd12..337b1dd0020 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2022-03-10"; }; +let derive2 = derive { snapshot = "2022-04-08"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -24,6 +24,7 @@ in with self; { ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; + ACV = derive2 { name="ACV"; version="1.0.2"; sha256="078n1if2rkbdhivrzp3lsq35a8awrf5y3s7fi3f5l21a9dmrk4d1"; depends=[forecast Matrix]; }; ACWR = derive2 { name="ACWR"; version="0.1.0"; sha256="19q8m5swp7ivrxi8rbkpp37d6fwr35zd8xs4ygpfgd07axc9451s"; depends=[r2d3]; }; ADAPTS = derive2 { name="ADAPTS"; version="1.0.21"; sha256="0ddmgk1syi0mafgp3fyvgz95ny8disyvmkd859ya32lykjjmwsxv"; depends=[ComICS doParallel e1071 foreach missForest nnls pcaMethods pheatmap preprocessCore quantmod ranger]; }; ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; @@ -44,6 +45,7 @@ in with self; { AEenrich = derive2 { name="AEenrich"; version="1.1.0"; sha256="049z696mkwha90w84l60r11q12r3jlam6kyh8abiy0zk2k425san"; depends=[doParallel dplyr foreach magrittr modelr qvalue rlang tidyr]; }; AF = derive2 { name="AF"; version="0.1.5"; sha256="1r87ra55g0qm2s8cgsmdwck93ia2vr8zfab3in45mxm5xc501xgk"; depends=[data_table drgee ivtools stdReg survival]; }; AFM = derive2 { name="AFM"; version="2.0"; sha256="1l0yd68h8vlii1437zhyrxj6fq1ghfaqclk860c25q2d055ajnqd"; depends=[data_table dbscan fftwtools fractaldim ggplot2 gridExtra gstat igraph mixtools moments plyr png pracma rgl scales shiny shinyjs sp stringr]; }; + AFR = derive2 { name="AFR"; version="0.1.0"; sha256="0anqgjnrbmr7yincp47wih3ks6zlljw46p3cg1m5ch4cjn1s8pns"; depends=[car forecast ggplot2 gridExtra lmtest mFilter nlme olsrr regclass rlang tseries writexl xts zoo]; }; AFheritability = derive2 { name="AFheritability"; version="0.1.0"; sha256="03w0a4z2x539ykyzdxm1mfqkhzz03cg0aqvgi062jrrm5m6f57ix"; depends=[ggplot2 mvtnorm reshape2 shiny]; }; AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; }; AGHmatrix = derive2 { name="AGHmatrix"; version="2.0.4"; sha256="1pvnv3fzxfdzjz9il0022k46kkcb57ypz31qn0br7mck64bkzsia"; depends=[Matrix zoo]; }; @@ -73,14 +75,13 @@ in with self; { AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMPLE = derive2 { name="AMPLE"; version="1.0.0"; sha256="1lcwwf41i0mkg2bv8z5mzrj6h3pa31h33mrmbxbndjgb3ivz2wf5"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; - AMR = derive2 { name="AMR"; version="1.8.0"; sha256="0vxm8rd2c4v4v0xq3h1yfxdjibz72pv9a8z43f3ii2ymgdwg5d31"; depends=[]; }; + AMR = derive2 { name="AMR"; version="1.8.1"; sha256="1q08d44c9ilryn3wwwncn1bq606mcg406vxq0zy7r5h9chgxnpp9"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; ANOVAIREVA = derive2 { name="ANOVAIREVA"; version="0.1.0"; sha256="04z2g79nnh5yhn4aqw0i7ck2b1z5dbasf1zp1sj6rjjrp9aqmaa6"; depends=[car dplyr ggplot2 plotly rmarkdown shiny]; }; ANOVAShiny = derive2 { name="ANOVAShiny"; version="0.1.0"; sha256="1z8wi8c8j3rlchfk1vx101qz1r9j2jl5lfh72y5lqsisqxl2fyyz"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAShiny2 = derive2 { name="ANOVAShiny2"; version="0.1.0"; sha256="0bnxfg5c37wi5g53jd0zqq31yx29zvlk2m2jh6jlwki8khpp9y00"; depends=[DescTools dplyr HH rhandsontable rmarkdown shiny]; }; ANOVAreplication = derive2 { name="ANOVAreplication"; version="1.1.5"; sha256="1d2r2cwpn9rdfbmiccag487pvsq6adn7b321c5z8i7n671h2wi26"; depends=[quadprog shiny]; }; - ANTs = derive2 { name="ANTs"; version="0.0.13"; sha256="01zncc9zzv32cdfy718c2cdbscy404zdhwn35vf5ha81zpz3ql3a"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen]; }; AOV1R = derive2 { name="AOV1R"; version="0.1.0"; sha256="0dv7k0mifybkarpwqyla5j6cvw9dcch09wvdq09ra9bsf4vyk652"; depends=[cellranger data_table lazyeval purrr]; }; APAtree = derive2 { name="APAtree"; version="1.0.1"; sha256="0vhvx2xp62avyq405jqn4i3z8awlifcs1lb527brxxhybrhnk4rv"; depends=[BH FD lwgeom raster Rcpp sf units]; }; APCI = derive2 { name="APCI"; version="1.0.5"; sha256="0wkpcjsgzk01x4qc395wwqr856fr096v8vhydcw84yrmp8w3clxx"; depends=[data_table dplyr gee ggplot2 ggpubr magrittr stringr survey]; }; @@ -124,15 +125,16 @@ in with self; { ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; - AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; + AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.99"; sha256="0ima350mjlqvij6f9xy6wfcibvlji7nh0prpqngj7apn82ri4m2k"; depends=[logistf]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; + AZIAD = derive2 { name="AZIAD"; version="0.0.1"; sha256="1nknqq33pls512r62agb6340634jf4b14hg0hm27dkxw0qjrqc70"; depends=[corpcor doParallel dplyr EnvStats extraDistr foreach lqmm matrixcalc MixAll QRM rmutil rootSolve]; }; Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; }; - AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-7"; sha256="13k3zczjycw24n5yp0qmrm233id5j8h6fvra57f1n6js7ljxiiq2"; depends=[]; }; + AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-8"; sha256="1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p"; depends=[]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; ActCR = derive2 { name="ActCR"; version="0.2.0"; sha256="1jjkmw0pwr8xlmhiw3wpyjfmi2xcx569zvp797ywvjk6rvipzw52"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; @@ -160,10 +162,11 @@ in with self; { AeroSampleR = derive2 { name="AeroSampleR"; version="0.1.12"; sha256="0p9mnmvr3mq41a39b8gcj99f4nh7wxwv4xly3c7bwwy2mi5c4qm5"; depends=[dplyr ggplot2 ggthemes magrittr purrr stringr tidyr tidyselect]; }; AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; - AgroR = derive2 { name="AgroR"; version="1.2.7"; sha256="0fk1q9pqqxmllk0462nlbijg61qixbfqv78r0gf3y9ch5njj0hgh"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; - AgroReg = derive2 { name="AgroReg"; version="1.2.1"; sha256="0pdr39vimd749h4khw9jj48k3k6ysi50ppc8jcca4sr7rmq138dc"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; + AgroR = derive2 { name="AgroR"; version="1.2.9"; sha256="1bpmnk57k1kmdhplrw5klfjwd3pfh2z42pspv37bm8055gqlpyzs"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; + AgroReg = derive2 { name="AgroReg"; version="1.2.2"; sha256="1f3h5ydq6wwb8g6zs7l8c3jbwjlz1f75wq4x4q6xqnrcbbrv2z3f"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.1"; sha256="1r04ns77axjm1nfhxbdq2zwr8gkbxrxblh9kicpv8jznc7ngb8mi"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; + AirMonitor = derive2 { name="AirMonitor"; version="0.2.2"; sha256="1pjr0cv8p4wh1r42dclarxbbd4iiwrv8zn6igdkr19829k1airkw"; depends=[dplyr dygraphs leaflet lubridate magrittr MazamaCoreUtils MazamaTimeSeries readr rlang stringr tidyselect xts]; }; AirSensor = derive2 { name="AirSensor"; version="1.0.8"; sha256="0wpfg3mry1vdyd9v1981hasizj1mn5wy60ig9swxlqdm7j11wxan"; depends=[countrycode cowplot dplyr dygraphs geodist geosphere GGally ggmap ggplot2 gridExtra httpcode httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaLocationUtils MazamaSpatialUtils openair PWFSLSmoke RColorBrewer readr rlang scales seismicRoll sp stringr tibble tidyr tidyselect worldmet xts zoo]; }; Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.2.0"; sha256="0ammlg148gk0p24fh700116nd66636np0jb1wwh0axq5jphwk1pz"; depends=[]; }; @@ -172,7 +175,7 @@ in with self; { AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.0-2"; sha256="0pmjh5nq67fxnwlszp5rlmnmzg4gdjkr9dzaz6b0p7vh2cfy9m45"; depends=[adegenet BiodiversityR vegan]; }; Allspice = derive2 { name="Allspice"; version="1.0.3"; sha256="1l11alczi3bq8l9np4wzwf19sfnkqpbllqw54mx30py7qz6p1ng3"; depends=[]; }; - AlphaPart = derive2 { name="AlphaPart"; version="0.9.2"; sha256="1k0ib1v8jssdgnjjkwapiy4vjf380dk103kmxlziz771vq2wsaix"; depends=[directlabels dplyr gdata ggplot2 magrittr pedigree Rcpp reshape]; }; + AlphaPart = derive2 { name="AlphaPart"; version="0.9.3"; sha256="0v1cv55lw1r2nr6b68h0d3f5j7x4rjbmd78d45h005hhr1lss8fp"; depends=[directlabels dplyr gdata ggplot2 magrittr pedigree Rcpp reshape]; }; AlphaSimR = derive2 { name="AlphaSimR"; version="1.1.2"; sha256="0pc3byi19ydlnmddgc76gdqgvlyw7ixa3k55471x8kxnz22fhcx1"; depends=[BH R6 Rcpp RcppArmadillo]; }; Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; @@ -183,7 +186,6 @@ in with self; { AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1.1"; sha256="0vw06x47vc0dqzafgpkn4abdsrhxfs9dq8nnrr2pl49skj5n4hks"; depends=[ggplot2 xtable]; }; AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.4.4"; sha256="1b03bxysvw9v4j3bzsmrjf5ci06v6s83ix89qxy73ba5akf2gb7h"; depends=[mvtnorm Rcpp VGAM]; }; - AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-24"; sha256="0qkhw6bik6s82h4yb5bashqjl8wfxarivvz6r5ffn9cgrvlwyahd"; depends=[fastICA R_matlab]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; AnchorRegression = derive2 { name="AnchorRegression"; version="0.1.3"; sha256="1bmlxk5j3i9mm71cwz785q5sysp8hsyy0080kgd3ksx78p68ara5"; depends=[glmnet mgcv selectiveInference]; }; Andromeda = derive2 { name="Andromeda"; version="0.6.0"; sha256="0q102bspkbx0nh80q92c8841fqz1y4rh1w29sw8shd5jplbfp5af"; depends=[cli DBI dbplyr dplyr hms pillar rlang RSQLite tidyselect zip]; }; @@ -212,6 +214,7 @@ in with self; { ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="2.0.3"; sha256="0rb1n9pmp7q2wdihn26kbpyvyznlk8mrs8c26l1ar4q29jw44rw4"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.16.1-1"; sha256="0hp08v6if476745v2mk9k2sp1ikiac94fcnp8v9jdcyx954fqqlq"; depends=[]; }; + AssetAllocation = derive2 { name="AssetAllocation"; version="0.1.0"; sha256="0b0hh0kgr2nm7p4hilh7n56d1x7yqlqmgbcs782vypkj1g4dg01p"; depends=[PerformanceAnalytics quantmod xts zoo]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-3"; sha256="199ygwfddpzxnj388gxkn7xyhnvjr24f5jg4lnydh0z7pb96pm5r"; depends=[deSolve polynom]; }; AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; @@ -233,7 +236,7 @@ in with self; { Autoplotprotein = derive2 { name="Autoplotprotein"; version="1.1"; sha256="13mxqmhhdiq7mz4m6nx39dsq7x3bm8fsgskswx48vsq6x2k6byxa"; depends=[ade4 plotrix plyr seqinr XML]; }; AutoregressionMDE = derive2 { name="AutoregressionMDE"; version="1.0"; sha256="1dmg0q4sp2d2anzhw2my8xjhpyjsx0kf7r202q5bkw8yr57jnhvr"; depends=[]; }; Autoseed = derive2 { name="Autoseed"; version="0.1.0"; sha256="0xr3sjfccvp8h18jqxzajb2pfn4nm8q9maic6k9zzr15fxvphiy5"; depends=[]; }; - AvInertia = derive2 { name="AvInertia"; version="0.0.1"; sha256="0s7syd3jas2gzqzswv0nj2d1q0sjfqgjayr5ds2w8i4fzsi9zdvz"; depends=[ggplot2 ggthemes pracma readxl reshape2 stringr tidyr]; }; + AvInertia = derive2 { name="AvInertia"; version="0.0.2"; sha256="1i3fy4jf91x662xhi07kcsg9b1p0hfyj2x5fav3zkvs9lx7gwfqx"; depends=[ggplot2 ggthemes pracma readxl reshape2 stringr tidyr]; }; AzureAppInsights = derive2 { name="AzureAppInsights"; version="0.3.0"; sha256="0dqk13r6iyaa54g21hda6fwijxlriq5dqnazvaw7cwh1zvivh8lm"; depends=[assertthat jsonlite lubridate rlang shiny]; }; AzureAuth = derive2 { name="AzureAuth"; version="1.3.3"; sha256="1arr7vbcj9ibrx826md487hcmlch46b2h3r03a14wxq6ssxj4x0z"; depends=[httr jose jsonlite openssl R6 rappdirs]; }; AzureCognitive = derive2 { name="AzureCognitive"; version="1.0.1"; sha256="1mn3qw5g77x24qyhybhn1p3h4s9ymdafrj35i24f32ncr5abnd2f"; depends=[AzureAuth AzureRMR httr jsonlite]; }; @@ -259,14 +262,14 @@ in with self; { BAMBI = derive2 { name="BAMBI"; version="2.3.3"; sha256="0v4rlsam7l3bdq2q7cmg1w2y4m1sj0ab2r2da76yq8rimch00q8g"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.8"; sha256="1ply8cj8sh8fn958g52i88gzyify79if41882cmks58diglpi0g5"; depends=[ape gplots Rcpp]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.0"; sha256="0zyfgcx6wxrl9vgdpbzcs8pb6irmyagknjkcl1x30pzlj4dlx3kg"; depends=[coda rjags rstan runjags]; }; - BARIS = derive2 { name="BARIS"; version="1.1.1"; sha256="1h1zrgpn69nvz61567c08vfynmzy70g31a37wp4p6g8wri1hr7xg"; depends=[checkmate data_table downloader dplyr httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; + BARIS = derive2 { name="BARIS"; version="1.1.3"; sha256="1ccwxc7s1qk9zcs546kkpwzv26rxswrydnblvg4b8vbm5790n0gv"; depends=[checkmate data_table downloader dplyr glue httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.9"; sha256="1yzwiyjc2gq2vvw5z2psmyqbbb1kq0xvsb0zingcn8qikw45mm5m"; depends=[nlme nnet Rcpp survival]; }; BAS = derive2 { name="BAS"; version="1.6.0"; sha256="01qmh49k5k6sidy3k5xx3cy3vmj8f59znd4z2jn0sqjzzngyxypg"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; - BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.1"; sha256="1jacfcnl86frnrnhil4xx8hi7v2l0na7ldb8nfhic1cdrmz323jr"; depends=[Biostrings igraph randomForest]; }; - BAT = derive2 { name="BAT"; version="2.8.0"; sha256="102z5x2c1dvmizza4zbzldimxl0vrvr9dnsm9jq7k9ml2mbipv3l"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; + BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.2"; sha256="1vls83b7yvbckw11n63yiss0dc852h807br8p1l49zhsq977sv4n"; depends=[Biostrings igraph randomForest]; }; + BAT = derive2 { name="BAT"; version="2.8.1"; sha256="0bf843r4mycxg7bx64bxz915zblyq0i9205f7kl3rgwi4bsxzymg"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; BAwiR = derive2 { name="BAwiR"; version="1.2.7"; sha256="1vvym7bbfbi1x91962nfcqql0fiyv4svdk5329rq43nnh188i456"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; @@ -277,10 +280,11 @@ in with self; { BBRecapture = derive2 { name="BBRecapture"; version="0.2"; sha256="1w0m8p4mwjsycv9krmsgdyjckic2nwxbyhrz1s2gng2v1h20zvlf"; depends=[HI lme4 locfit secr]; }; BBSSL = derive2 { name="BBSSL"; version="0.1.0"; sha256="0vb3afbx8p3frliy92sf2wlmx32rasxj39i8d023m2dvsblbh50x"; depends=[glmnet greybox Matrix mvnfast rmutil statmod svMisc truncnorm]; }; BBcor = derive2 { name="BBcor"; version="1.0.3"; sha256="160d34an9837i9myw9m0yxplh1z2cmhx2wc7m59dlld5zap4glag"; depends=[bayeslincom ggplot2 pbapply psych Rdpack wdm]; }; - BBmisc = derive2 { name="BBmisc"; version="1.11"; sha256="1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y"; depends=[checkmate]; }; + BBmisc = derive2 { name="BBmisc"; version="1.12"; sha256="0gh5f342rwra79i7imv50x8vrhd2zkifm7khb0yv3ndpd4zn62lh"; depends=[checkmate data_table]; }; BCA1SG = derive2 { name="BCA1SG"; version="0.1.0"; sha256="14jvi5gn19f72szcnyhfpdld00cc7gyih5qrm4bpzvp553f1svvk"; depends=[logOfGamma Matrix]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; + BCDAG = derive2 { name="BCDAG"; version="1.0.0"; sha256="1a4ylby1hm2pfdf22qvw1qpgs742y77kpvmymikx8pc1vnhmwjih"; depends=[gRbase lattice mvtnorm]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.4.1"; sha256="1x5hyl09ky7jgqvqfnf8sx6s8ncglbhk2bwj8mvhl02kgx4n42k6"; depends=[dplyr ggplot2 GrassmannOptim gridExtra MASS purrr reshape2 rlang]; }; @@ -294,13 +298,13 @@ in with self; { BDEsize = derive2 { name="BDEsize"; version="1.6"; sha256="0dyjd5f1cqmzqnrbxz06pbxrk6gjrmsh2x6p7qllczvlmm7jdm5i"; depends=[fpow ggplot2]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.64"; sha256="0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4"; depends=[igraph]; }; - BE = derive2 { name="BE"; version="0.1.5"; sha256="0z4cd6z5r0r0smk8q0zhl264zj48pfp8w3hgdap59zsqrn5c6z5l"; depends=[rtf]; }; + BDgraph = derive2 { name="BDgraph"; version="2.65"; sha256="0rg3wi9xwsbj90gb60p3vzkfrf76hwh47nc6fwv6c21yzd3s7vm4"; depends=[igraph]; }; + BE = derive2 { name="BE"; version="0.2.0"; sha256="0v2bc9lskhrhp5bnc6c21wwdnralnggn7qbwdqk0bgvmxsyn5ghn"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; BED = derive2 { name="BED"; version="1.4.4"; sha256="1hbdjxh695607ppmk39xclh26k1bq9hrysyp8nc5axhhg1drpiff"; depends=[dplyr DT htmltools miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; - BEKKs = derive2 { name="BEKKs"; version="1.0.1"; sha256="0r8hcbkby9b60qyc0hjr1hi0k1zyzg546ggx8hfm83z0507qsdj0"; depends=[expm forecast future future_apply ggfortify ggplot2 gridExtra mathjaxr Rcpp RcppArmadillo reshape2 xts]; }; + BEKKs = derive2 { name="BEKKs"; version="1.1.0"; sha256="0pq2wv107sp7s3k9rlyk5mrdkijy3k017i6i6y16fnzpkz5gi6lw"; depends=[expm forecast future future_apply ggfortify ggplot2 gridExtra mathjaxr Rcpp RcppArmadillo reshape2 xts]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; @@ -313,7 +317,7 @@ in with self; { BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; BGLR = derive2 { name="BGLR"; version="1.0.9"; sha256="16chvslsknhfjdnfy79y4bl5xayvrk8j01y0r3nddq02ypwrc2j4"; depends=[MASS truncnorm]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BGVAR = derive2 { name="BGVAR"; version="2.4.3"; sha256="109nmcjwbcgzcbah2pb8k3db3rbcpd2xsswjw1q7nl75v3rwdlp6"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; + BGVAR = derive2 { name="BGVAR"; version="2.4.5"; sha256="1jfljhaw54lxv91skvvxaqs6y8pailcp9yphd97kvw8vqnx9yqfy"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; BGmisc = derive2 { name="BGmisc"; version="0.1"; sha256="15xgm3n3hn5zkrvyfcylyz5q3zah0155914a0rck0ipihb45sbbl"; depends=[Matrix]; }; BH = derive2 { name="BH"; version="1.78.0-0"; sha256="1cwc1q8w9d6i81nclgi7lycsnpj0dcbxlv9rdb0f04r0d03rv7iv"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; @@ -324,13 +328,13 @@ in with self; { BI = derive2 { name="BI"; version="1.0.0"; sha256="192qdw2ag8sdw5v7xsc19y2a6w7gs58lnlh0yakc2i0jjad3iyw5"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; BIEN = derive2 { name="BIEN"; version="1.2.5"; sha256="0s98n6zbf48vssd3h63k6kashcxv1kawcb026n0ngsfpc5dv6i48"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; - BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; + BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.4-15"; sha256="0dm2yq2mmpiksmd1r248dv64sn72gazlsrjjwb0bsblivk69s21j"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; - BINtools = derive2 { name="BINtools"; version="0.1.0"; sha256="061g1790m3gi88kj1avgxdnpdvj6n2mg5dh17c7vx4gx5g5x2q2d"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan StanHeaders stringi tibble]; }; + BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; - BIOMASS = derive2 { name="BIOMASS"; version="2.1.7"; sha256="015gfn7b0viymrb06q33gwz8ljpiwawrdscb2q2bk0j6vi1gnncx"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; + BIOMASS = derive2 { name="BIOMASS"; version="2.1.8"; sha256="18ypdqh5fc9a7yq8y5insadmvamrzrd9yn00g1cj1lxii0jn4r43"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; }; BISdata = derive2 { name="BISdata"; version="0.1-1"; sha256="0h0fw2qhv0jq9h7mig7rfg5w9gc9q3hz6jl5n3v85yjkw5fxfdns"; depends=[]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; @@ -370,7 +374,7 @@ in with self; { BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; BPmodel = derive2 { name="BPmodel"; version="1.1.2"; sha256="1fmiz06ci3x4ljaap6famnz82mrf2rcdg4d282x6wghpy4yv4afa"; depends=[Deriv dplyr extraDistr gamlss gamlss_dist ggplot2 pracma]; }; - BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.1.2"; sha256="1p5fvmzkydask47hmz1fnss1sc1hrp1s7h28qn5q6fja0r52kzkz"; depends=[reticulate]; }; + BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; BRINDA = derive2 { name="BRINDA"; version="0.1.3"; sha256="1nq7wlwwlyfff0rn4yv8bws0ibd7wssb1jd6ccc7xvhdb2bqv9kc"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; @@ -416,14 +420,13 @@ in with self; { Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; BaseSet = derive2 { name="BaseSet"; version="0.0.17"; sha256="1v5f8ixcnqngrhsfrydl7y48gmvmb5srs4xygydv4g4vpmd8gh0c"; depends=[dplyr magrittr rlang]; }; BasketballAnalyzeR = derive2 { name="BasketballAnalyzeR"; version="0.5.0"; sha256="1bad287llg89smqg43lgz2hdkjg3l39mh4k82avgb52xwqp5gjxc"; depends=[circlize corrplot dendextend directlabels dplyr GGally ggnetwork ggplot2 ggplotify ggrepel gridExtra hexbin magrittr MASS network operators PBSmapping plyr readr rlang scales sna sp statnet_common stringr tidyr]; }; - BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.2"; sha256="0zvcpgzhbna6p37jlf57j7mzrvh5xs5w17janmv9v4210cpbzi1q"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; + BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.3"; sha256="0g3vr2g4v968rwzja1nngji58960p2r494km8wia7x5w3y69p063"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.1"; sha256="0jm4bswczmha7p8xb78n4q3wxyjxmi7ya5zrfm0gb31g7r275wba"; depends=[crayon curl dplyr furrr future lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; - BatchJobs = derive2 { name="BatchJobs"; version="1.8"; sha256="1zz4sspj596pijxlz321g0jy2rg9ki83j6fihbwisjwr66p2vk1m"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; + BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; - BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; BayesCACE = derive2 { name="BayesCACE"; version="1.2"; sha256="0rzjnhjvcnfy7dffq2jpybg6ybgkzfibz5kbd2qwbflj62h3v899"; depends=[coda forestplot lme4 metafor Rdpack rjags]; }; @@ -445,7 +448,7 @@ in with self; { BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.1.0"; sha256="10yfhbigf30pjywhjzpcjdzf2cz7lz1lhx026ss1154sinbqavg4"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.1.1"; sha256="088j10ahvy2wi7m4h69cwzzrshgrbsdkqy5pcakra8p5n0vsi51j"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.0.0"; sha256="158vwfp5wn9g28fg48zmd95lfsr6flmcdm4igfw4cmgp4w0w69lq"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; @@ -469,7 +472,7 @@ in with self; { BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; }; BayesSurvival = derive2 { name="BayesSurvival"; version="0.2.0"; sha256="1kpp0dfcmk86grg13b817py49v071q6p0dh8z22g6x2i8zl1vdfi"; depends=[ggplot2 survival]; }; - BayesTools = derive2 { name="BayesTools"; version="0.1.3"; sha256="0rbj503kxv0bgb2g05lwbl87xd8a2d6hh2z3pmv8ssd1wlh4s895"; depends=[bridgesampling coda extraDistr ggplot2 Rdpack runjags]; }; + BayesTools = derive2 { name="BayesTools"; version="0.2.3"; sha256="1h9v47dy1g2xhplg3j24yrqwcfd3k3lrvh29ankv2mmk0mix6asc"; depends=[bridgesampling coda extraDistr ggplot2 mvtnorm Rdpack runjags]; }; BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; @@ -486,7 +489,7 @@ in with self; { BayesianTools = derive2 { name="BayesianTools"; version="0.1.7"; sha256="0330bbnny35h4gsmwg31p3n3i511wrckzmp174ydm55pvsdkhjdg"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0"; sha256="0m8snwhjskwxdm0a2wsmf1j7d0xxvg4sh0ix64zss71l610wica7"; depends=[MASS Matrix mvtnorm]; }; - Bayesrel = derive2 { name="Bayesrel"; version="0.7.4"; sha256="1mjfjyvzacbc4gmg69vr6mdkxl9133dl13czy4dvf6phgfwqgz2b"; depends=[coda LaplacesDemon lavaan MASS progress Rcpp RcppArmadillo Rdpack]; }; + Bayesrel = derive2 { name="Bayesrel"; version="0.7.4.1"; sha256="058sm8kb2y1frwcrkfammb6zqf66jq0rwykgy4qg1i21xr0vaw2d"; depends=[coda LaplacesDemon lavaan MASS progress Rcpp RcppArmadillo Rdpack]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; @@ -498,7 +501,7 @@ in with self; { Bestie = derive2 { name="Bestie"; version="0.1.4"; sha256="1w8d1zrxp5v0wlldzj0kmcrdwyn5f2klbdpkhd79hvpf3lpq6h68"; depends=[BiDAG mvtnorm Rcpp]; }; BetaBit = derive2 { name="BetaBit"; version="1.4"; sha256="11cvl9m20ycc0zsxbdapjflgsiaxx4dzaygjhv948adjfi5fycbn"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-1"; sha256="17q1bfmijv38zyaj5fxlylf5zmkqry4ca9wm5km6zpksgsg2kjjq"; depends=[betareg ggplot2 pbapply]; }; - BetterReg = derive2 { name="BetterReg"; version="0.1.0"; sha256="0v9vw77h469352w0apy3ybwcjq64qdrizlrlmxk8c1x9kc624264"; depends=[car dplyr]; }; + BetterReg = derive2 { name="BetterReg"; version="0.2.0"; sha256="08qafm8j0bbh6qywyq6dr1j204n9cxrpyy2fh74mbgm3xknazxsc"; depends=[car dplyr]; }; BeviMed = derive2 { name="BeviMed"; version="5.8"; sha256="12ngw3b05mqsf95svvkk5s8w0fs1yfbpbfk8x9a9v2yva5n65y7a"; depends=[Matrix Rcpp]; }; BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; @@ -512,8 +515,9 @@ in with self; { BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; + BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; }; BigQuic = derive2 { name="BigQuic"; version="1.1-11"; sha256="1dxzkj26hd05mi02i35k7dknlikjfbsgvjrqwf42k3kjpf501xh4"; depends=[Matrix Rcpp scalreg]; }; - BigVAR = derive2 { name="BigVAR"; version="1.0.6"; sha256="03d5a61clkngq67mkf2pyjj3k633kxp7g37myfplbxi55bdfmdlz"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; + BigVAR = derive2 { name="BigVAR"; version="1.1.0"; sha256="0a9c9c71ymw498pzz2q5bwywcg9fa3hvjmbcn1flrmpzwr7cv6yx"; depends=[abind lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; BinGSD = derive2 { name="BinGSD"; version="0.0.1"; sha256="0ygr5na7s82xa6vv9f3j6ns5sfhdacyykl1fg422lpkwbss39dnn"; depends=[mvtnorm]; }; BinMat = derive2 { name="BinMat"; version="0.1.5"; sha256="1brgv0zmprvwx6x670mmxxlk50nh4ds63bip48mlh0p1qv8pm9db"; depends=[ggpubr MASS pvclust tibble]; }; @@ -566,12 +570,13 @@ in with self; { Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; BoSSA = derive2 { name="BoSSA"; version="3.7"; sha256="0qhcar3grp6l6islbjc27jqvgh37kkdi0nql6plsqwilldv3kis6"; depends=[ape jsonlite phangorn plotrix RSQLite]; }; BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; + Bodi = derive2 { name="Bodi"; version="0.1.0"; sha256="1z3xamj4qh3g5asrl3kbvcnx3r66mch34d0hlz9vg0498s9fwn6s"; depends=[gbm mgcv opera ranger rpart]; }; Bolstad = derive2 { name="Bolstad"; version="0.2-41"; sha256="0rrx254wmr4i57h097ahba151chm8l2287qfg01p1lg47znld21h"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BoltzMM = derive2 { name="BoltzMM"; version="0.1.4"; sha256="17nsjr2y8nniaxd6f13g85gb9rshar72qqp45yh2ygg4zrx1d226"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BondValuation = derive2 { name="BondValuation"; version="0.1.0"; sha256="1sgnf5a6rm1br6i82bmp7s044012bwfxa9yb6bjkq8kr83mf7i6v"; depends=[Rcpp timeDate]; }; - BoneProfileR = derive2 { name="BoneProfileR"; version="2.1"; sha256="1wdwf15x6rz7dciqyyqjlgzgqxas9lzmg3410qhbvcslf6w9gq0y"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; + BoneProfileR = derive2 { name="BoneProfileR"; version="2.2"; sha256="1x51x27y7jnln9hc49ri0csh0whpwphdfadaf1gpzx7g7q37yfgv"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.5"; sha256="11fysc39vfk3zb9qklryi8gl42c3hqgzlvci4jj0zkqnm0v9amqk"; depends=[igraph XML]; }; Boom = derive2 { name="Boom"; version="0.9.7"; sha256="0zw5i6xigpg8jnk4k2w8iqnxlbgk8zzd5dmfmi5wjc153vgssk12"; depends=[MASS]; }; @@ -583,6 +588,7 @@ in with self; { Boptbd = derive2 { name="Boptbd"; version="1.0.5"; sha256="1p786avc37yq5g01zh6sqx7b1rvbxrh6gbxsad4bdvr12cjdsss6"; depends=[igraph MASS Matrix]; }; Boruta = derive2 { name="Boruta"; version="7.0.0"; sha256="0y2w4wb45kfnzrxcrdsiwgal9fsnlr3wad1sqdc70qv8gp921xbg"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; + BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.3"; sha256="07vfaxgxnzj3dlv116x32bndzqmdbpc5szpjw73a9km8f2fkkb2k"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.1.0"; sha256="10c76l14kdvcyfhph5zsrn4ayh0x454cxbn1v85jamcalp610n69"; depends=[glmnet MASS]; }; @@ -600,7 +606,7 @@ in with self; { BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; - BuyseTest = derive2 { name="BuyseTest"; version="2.3.10"; sha256="19mp6hyj4fdq7gmpd9jfg6rgf7mazbgxzpf9fs258s91pm35vljp"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo riskRegression]; }; + BuyseTest = derive2 { name="BuyseTest"; version="2.3.11"; sha256="1qn3nb8099rr511wrq7mb35hdm25hkyhfk22rmpw9z1md72xg9qr"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo riskRegression]; }; Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; BwQuant = derive2 { name="BwQuant"; version="0.1.0"; sha256="0pna0ppj9hkxpc2mbyy0ss7zrl5y736h5xsfkhmqr0389vmgibrj"; depends=[KernSmooth nleqslv quantreg]; }; C443 = derive2 { name="C443"; version="3.2.3"; sha256="0zjnwkn17213x2zhflmmrplp6kr8zg04pfynpkwsgmf4rqyfyjvx"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; @@ -609,14 +615,14 @@ in with self; { CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; - CALANGO = derive2 { name="CALANGO"; version="1.0.8"; sha256="0i9n03km29bnhikk0a4dsh4pdchbynqmcvwzply7y2fgzs9bfwx4"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; + CALANGO = derive2 { name="CALANGO"; version="1.0.10"; sha256="09syfslac2bhw8dia9c64xkfqsr3j0nr134pq9gvj7jvy5b3dqbr"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.1.1"; sha256="06xszdr3v41qqd2l0s3kdbzwn03054imazndplbihx5a7032gxvj"; depends=[AnnotationDbi dplyr edgeR MASS Matrix org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="5.2.5"; sha256="0lrir2qqpignndvf8xjpyiwh9fc9iw2b0bin5vlxh88krhbkyx9f"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="3.2.1"; sha256="0gbn11lmfax6frc70dyl667r4afn36zrjrxxky3rvmry4apqpwl3"; depends=[CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp rgdal sp spam spdep truncdist truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="3.2.2"; sha256="1xpyk2y1qjaaqvxhbhxbkx97kfddy24cx81my1100v5i8mabfayq"; depends=[CARBayesdata cascsim coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; CARBayesdata = derive2 { name="CARBayesdata"; version="2.2"; sha256="06pkhmlkp4hl7c6bgarhab6z640h1xvgw86q1ihipbc432an4gvl"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; @@ -624,10 +630,9 @@ in with self; { CARS = derive2 { name="CARS"; version="0.2.2"; sha256="18l2bhfwma24q1zg1y1xmlcmnbzjqmmny3h7s179kslagnh3kmsj"; depends=[np]; }; CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; - CAST = derive2 { name="CAST"; version="0.5.1"; sha256="0ph71nwp6zibmgy324aqqcwx2p2m75560q2nglm6rg8bww9wib6x"; depends=[caret data_table FNN ggplot2 lattice plyr reshape zoo]; }; + CAST = derive2 { name="CAST"; version="0.6.0"; sha256="1v20cdldfyli3bn0m9dpfz8apapzqvxy03r1hk2pbv65lqpair4f"; depends=[caret data_table FNN ggplot2 lattice plyr reshape zoo]; }; CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; }; CATTexact = derive2 { name="CATTexact"; version="0.1.1"; sha256="07ciln6cfvqya7dwwn6mhd9lk2833hypm4badizgfi2k749d1p00"; depends=[]; }; - CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; }; CAinterprTools = derive2 { name="CAinterprTools"; version="1.1.0"; sha256="07rvi91ysqyfwagmip0cnqjahv1n8slicd5hznqf5v3l841xh7p7"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; }; CAvariants = derive2 { name="CAvariants"; version="5.6"; sha256="1rv3r27m43q8z9hiac5fj3kx77j0sfmcgxwcl6mdfgx0jwq7pi3s"; depends=[ggforce ggplot2 ggrepel gridExtra plotly]; }; CB2 = derive2 { name="CB2"; version="1.3.4"; sha256="0431bd956hmkrhs9x845vjwbzzwzd7n9nfx9y95mv6qv84zd4wv2"; depends=[dplyr ggplot2 glue magrittr metap pheatmap R_utils Rcpp RcppArmadillo readr stringr tibble tidyr]; }; @@ -649,13 +654,13 @@ in with self; { CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; - CDatanet = derive2 { name="CDatanet"; version="0.0.1"; sha256="05nh56w18bf1yk2i74ppslvd3307b6pqif7bbjcgm8q6nha2mrfq"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppProgress]; }; + CDatanet = derive2 { name="CDatanet"; version="1.0.1"; sha256="1ah992z1icmwm04m812fvhdgsjibvbkp4i2gm6fd0v10vr9iczg8"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppProgress]; }; CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; }; CEDA = derive2 { name="CEDA"; version="1.0.2"; sha256="1nsflq7bnrakf564cazskdmba5xfamjyvm0gd5ws51qlxl1ajxv1"; depends=[ggplot2 limma mixtools]; }; CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; CENFA = derive2 { name="CENFA"; version="1.1.1"; sha256="0b1zpazbqynlnmf8k25r5bjmidymskqc96xpmwqkl23xlz1f2x3s"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; - CEOdata = derive2 { name="CEOdata"; version="0.2"; sha256="1zc69acy2jvawbv43wg52gnak3klavcr1yzab6rbabav5vk53vhn"; depends=[dplyr haven jsonlite stringr urltools]; }; + CEOdata = derive2 { name="CEOdata"; version="1.0.3"; sha256="0cj01qlalpkdk3sdb9434dkf5qakixa3pvnc5pyvfapgpx5n7wp7"; depends=[dplyr haven jsonlite stringr urltools]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; @@ -664,7 +669,7 @@ in with self; { CGE = derive2 { name="CGE"; version="0.3.3"; sha256="0q1fv62159cx9z25488fxf6a6fi1m59hdh60ldypsjwil77q0s3i"; depends=[]; }; CGGP = derive2 { name="CGGP"; version="1.0.3"; sha256="1g70hjpc33dnr6yw42kjhy9ngba05qzk5mr7md6pqhmbx0ykhr6g"; depends=[Rcpp RcppArmadillo]; }; CGManalyzer = derive2 { name="CGManalyzer"; version="1.3"; sha256="1wmp5im18s447rjkj891skrm7558xkqlbx43n9hyxiqg49zq1ng9"; depends=[]; }; - CGNM = derive2 { name="CGNM"; version="0.1.1"; sha256="0i43pqvyz1brzlypmqsiynw997x8rh8im65yvh4zlnh3bjwrvcrs"; depends=[ggplot2]; }; + CGNM = derive2 { name="CGNM"; version="0.3.1"; sha256="1hls817p0c5lh0zhg93h7gphl1nch44xik5gp10ciabl57zyhr8r"; depends=[ggplot2 MASS]; }; CGP = derive2 { name="CGP"; version="2.1-1"; sha256="05a6gydlb99yk2jpy2hyg4c30hqyp8dg2i9dmbjc1n5cmgpg3im9"; depends=[]; }; CGPfunctions = derive2 { name="CGPfunctions"; version="0.6.3"; sha256="12l3ww9wfrk8i0a63wv5h4ayqj6fj5fz5yvkiskvaaida32vds2m"; depends=[BayesFactor DescTools dplyr forcats ggmosaic ggplot2 ggrepel paletteer partykit purrr rlang scales sjstats stringr tidyr]; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; @@ -681,19 +686,19 @@ in with self; { CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; }; CIM = derive2 { name="CIM"; version="1.0.0"; sha256="02l8rspiiv6vj6k0q6wpiazny3f2s4dsivsm7zb9cm90qh1rv2d7"; depends=[]; }; - CIMTx = derive2 { name="CIMTx"; version="1.1.0"; sha256="0091qdh10nxvzm4xxw0vw6k5pa7pi5mdfi5b9msfqfvzq00gyjfx"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; }; CINID = derive2 { name="CINID"; version="1.3-0"; sha256="06n5bwjr44rx0m12xradzaca26rvh01mlimbn0gr3jfzkmyj2f1g"; depends=[]; }; - CINNA = derive2 { name="CINNA"; version="1.1.55"; sha256="0xw3ndjy262ljv6mk43ysb7mf4m02kcb5kzz1gzdxdwhj3v7ylgb"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; + CINNA = derive2 { name="CINNA"; version="1.2.0"; sha256="0pijsr3ciqi9i5pi3ppc8zz573lzwly0mwglz2xdfkwmwy2bzdqi"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CINmetrics = derive2 { name="CINmetrics"; version="0.1.0"; sha256="1csh22b7ap7isnrjak7yp32hasxq8x4j094i9shrnzsz6sxcmc28"; depends=[]; }; CIS_DGLM = derive2 { name="CIS.DGLM"; version="0.1.0"; sha256="0c7jxfb8gaklf6p83152wb2nszm2p806p3n523xajf4ha368d3kq"; depends=[dglm dplyr ggplot2 RColorBrewer]; }; CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; - CITAN = derive2 { name="CITAN"; version="2021.11-1"; sha256="15dy0n8yms8c01wp38wnn6541a9gq8q7x4sb76ggm9y4bldj6xj3"; depends=[agop DBI hash RSQLite stringi]; }; + CITAN = derive2 { name="CITAN"; version="2022.1.1"; sha256="09m9f6s9y7ygbixcymg93vsrqz5jsjp968cjhxnj1v73hzalk168"; depends=[agop DBI RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.1"; sha256="0caznbqy5hsp7h0gkdbv966vfpq8z1khvbizi4vpc9mxck1nqc99"; depends=[optimx]; }; CKAT = derive2 { name="CKAT"; version="0.1.0"; sha256="03vxl91z2mhi1h0xgcwhw63mvj56156zgphm16ijdff63pqxaryr"; depends=[CompQuadForm]; }; CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; }; CKMRpop = derive2 { name="CKMRpop"; version="0.1.3"; sha256="0d4sai2h2cfzh4hbg8yh7wqb459j948j3s0m218d3gcippm22jpb"; depends=[dplyr ggforce ggplot2 ggraph igraph magrittr purrr Rcpp readr stringr tibble tidygraph tidyr vroom]; }; CLA = derive2 { name="CLA"; version="0.96-2"; sha256="0cfa7zm13bin8hx8ki20kaz8fvkwdaiyl0pjghhld8vr5d3289kq"; depends=[]; }; + CLAST = derive2 { name="CLAST"; version="1.0.0"; sha256="0s90xy9mscfyc9ss84zn771pczbwdrgpfri92h1pdlbs3kw5axp3"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; }; CLUSTShiny = derive2 { name="CLUSTShiny"; version="0.1.0"; sha256="19mh5g1ylvlab4xjxw7girxk9zkpxxczhbfijf11b592hbw0qxqk"; depends=[cluster dplyr klaR MASS psycho rmarkdown shiny]; }; @@ -712,7 +717,7 @@ in with self; { CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; CNPS = derive2 { name="CNPS"; version="1.0.0"; sha256="046jd4nh54qaqm85m74nvgj6x83mf8sd76y4dxydy4ydrk4cvz6p"; depends=[]; }; CNVRG = derive2 { name="CNVRG"; version="1.0.0"; sha256="0xr2c5yc9g8hqw5dy5k2y0pm54sdrrbafsc3cpafpwaf803vdrbk"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble vegan]; }; - CNVScope = derive2 { name="CNVScope"; version="3.6.0"; sha256="1p1kn48ib11f5f7k4c7iy92vplv9csgyabgmxcy3bnv9q20b10an"; depends=[biomaRt data_table doParallel dplyr foreach GenomicInteractions ggplot2 jointseg magrittr Matrix matrixStats numbers OpenImageR plyr RCurl reshape2 rtracklayer shiny stringr tidyr]; }; + CNVScope = derive2 { name="CNVScope"; version="3.7.2"; sha256="03jkivg9jr2dpkf739cba3dsjf56gwvcpq3nqhp42kmmgn50rpiq"; depends=[biomaRt data_table doParallel dplyr foreach GenomicInteractions ggplot2 Hmisc jointseg magrittr Matrix matrixStats OpenImageR plyr RCurl reshape2 rtracklayer shiny stringr tidyr]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; @@ -751,6 +756,7 @@ in with self; { CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; + CSHShydRology = derive2 { name="CSHShydRology"; version="1.2.0"; sha256="0wx17hi99ciys5mrzcqh1ma99hfa5l533637kcf6gbcy270a09aw"; depends=[dplyr fields ggplot2 ggspatial here httr jsonlite Kendall lubridate magrittr plotKML plotrix raster sf sp stringr tidyhydat timeDate whitebox]; }; CSIndicators = derive2 { name="CSIndicators"; version="0.0.1"; sha256="1d0mdbgg4y9773di8a86c8lss5f29c936pa7qv7vvznyc7mxkqzz"; depends=[ClimProjDiags multiApply s2dv]; }; CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; @@ -784,7 +790,7 @@ in with self; { CVrisk = derive2 { name="CVrisk"; version="1.1.0"; sha256="0xnpnjncdal2akdnkb52s7r82p2di0rc48h6nswbclkl5xf3snd6"; depends=[]; }; CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; }; CaPO4Sim = derive2 { name="CaPO4Sim"; version="0.2.0"; sha256="0s4mqlas41ll656hj1imzqydgwgw002d469z01fjdcs4d6daljw6"; depends=[DT htmltools magrittr plotly purrr rintrojs shiny shinycssloaders shinydashboard shinydashboardPlus shinyjqui shinyjs shinyWidgets visNetwork]; }; - Cairo = derive2 { name="Cairo"; version="1.5-14"; sha256="0ysc40smkjwk8fmp5dk0q3nbp9xkxzz9pd4z5zkp2mrvrvx52xq6"; depends=[]; }; + Cairo = derive2 { name="Cairo"; version="1.5-15"; sha256="17g8s80h9kc0a4zpb153sprjm6ndjl3gkpb63aq5xh9ickzv2fmv"; depends=[]; }; CalSim = derive2 { name="CalSim"; version="0.5.2"; sha256="1ij3xaizq1lpq5vg25i8pz4khm7ab81kzfayp6a914n0jgxvprj7"; depends=[ExactMultinom spatstat spatstat_geom]; }; Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; }; CalibratR = derive2 { name="CalibratR"; version="0.1.2"; sha256="1hnmhijckxd35h8mhpzqpglk1ykdih2c5kg17myc7cci5xjk9nfr"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; }; @@ -792,6 +798,7 @@ in with self; { CallEshotgun = derive2 { name="CallEshotgun"; version="0.2.0"; sha256="09xi0867vi0x244ahg9rrm2rr6f9x7fzrmlifb098akik2pvfn20"; depends=[reticulate]; }; CamelUp = derive2 { name="CamelUp"; version="2.0.3"; sha256="1d3ywb4bxnn149api6lqry8q9lasng79hzka9ndr5cv38pkbvva9"; depends=[data_table dplyr ggplot2 magrittr Rcpp shiny]; }; CancerGram = derive2 { name="CancerGram"; version="1.0.0"; sha256="1p612dbn6dxn3nz8m0pzlsbczg3f8gwqk9q0fnxbcdlbll0vf2k0"; depends=[biogram devtools dplyr pbapply ranger shiny stringi]; }; + Canek = derive2 { name="Canek"; version="0.2.0"; sha256="07f1cs3vd00jkfkm1iz8ciwf6d8vhrbxvp4krmjng9apxjhgamfc"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="1.0.1"; sha256="1flh1161hx62xsgw0k7rncvwgzgsay5xwihcykyypwbdlccmqhiw"; depends=[]; }; @@ -825,7 +832,7 @@ in with self; { CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.15"; sha256="1csi6hbbxnm4ilss2qganimh2sqgk2xb8dxa6fz0bdh0s5f6x79j"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; - ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.1.1"; sha256="1jfymyqdcyxfgn15y0iff7midkfd69fh3amz201idg6248g1y6n8"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; + ChangePointTaylor = derive2 { name="ChangePointTaylor"; version="0.2"; sha256="0rf3h7l8l6fw2i489ldcqhsf9ppjzpx298p5ciyp9iyc0zcykz38"; depends=[bench dplyr ggplot2 magrittr purrr Rcpp rlang tidyr]; }; ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; }; ChannelAttribution = derive2 { name="ChannelAttribution"; version="2.0.5"; sha256="09qdj93al6r7pg9s2xvwks7d73bgjsn1k7h8rcdzf245r89l8726"; depends=[Rcpp RcppArmadillo]; }; ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.3"; sha256="0n9g8wwvc8p5clypl7z23w8fs6d0c47bblijwd4pjwy26bcb4m8h"; depends=[ChannelAttribution data_table ggplot2 shiny]; }; @@ -833,7 +840,7 @@ in with self; { ChaosGame = derive2 { name="ChaosGame"; version="1.1"; sha256="1gwrym3vjcqlj0ih479ipbajypajy9ga9sr3laj7g5zxx3cm4y4c"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; - ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.2"; sha256="0g09zr1ysafzafs8gjzacrqpgd6vad39i1vsmr3smprp8f4739mq"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; + ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.3"; sha256="0h2jc0hdyi58hmg64vg7qijs7rp05ssxm4p8h3fv70jr58n94633"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; ChillModels = derive2 { name="ChillModels"; version="1.0.2"; sha256="06hgg893anh5z8an4l1xl4liz7d0m79n21h116vkdlymayccydbr"; depends=[]; }; @@ -857,6 +864,7 @@ in with self; { CleanBSequences = derive2 { name="CleanBSequences"; version="0.4.0"; sha256="12s24v2kfyc32pm34ibw58zzjqhzwlrqrkhl0m70jcqvn50b5r98"; depends=[Biostrings]; }; ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; ClickClustCont = derive2 { name="ClickClustCont"; version="0.1.7"; sha256="1caymvpwvxq4rirnjm2kwzvqm1pl01rdc3785k8mq4k2m0n6l2rz"; depends=[gtools]; }; + ClickHouseHTTP = derive2 { name="ClickHouseHTTP"; version="0.1.1"; sha256="19hn4zi5dlgkpqd7wkfg1aln21cks1pc66pb0xs4nr2sp6gmrpg0"; depends=[arrow data_table DBI httr jsonlite]; }; CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; @@ -875,7 +883,7 @@ in with self; { ClusVis = derive2 { name="ClusVis"; version="1.2.0"; sha256="06yckdl3gxjia1gjjqpc29lvy4f7qf47fncslng9ggjnks6il145"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; }; ClussCluster = derive2 { name="ClussCluster"; version="0.1.0"; sha256="1436849m2mnm8j7lf653zv8lcvvg2ch8kkks4bvr39kx21wxy8ss"; depends=[ggplot2 reshape2 rlang scales VennDiagram]; }; ClustAssess = derive2 { name="ClustAssess"; version="0.3.0"; sha256="0b8p5dpb843rv8q1hsc74zhxyn9wjgdxwpwrbq2yx4jmy8v65gzq"; depends=[doParallel dplyr fastcluster foreach ggplot2 igraph irlba magrittr Matrix progress Rcpp reshape2 rlang stringr uwot]; }; - ClustBlock = derive2 { name="ClustBlock"; version="2.4.0"; sha256="1bl0a32il4ai181q5s2fvmpm4jbqwxjvrrxwkaqxb7dnb846cmv0"; depends=[FactoMineR]; }; + ClustBlock = derive2 { name="ClustBlock"; version="2.4.1"; sha256="1y1icf9m1ry99fgdwf739jy3ii7n3ilsqxv8xwld9h3hmvajx3fh"; depends=[FactoMineR]; }; ClustGeo = derive2 { name="ClustGeo"; version="2.1"; sha256="03f7appg9n90ahzjhh5si9iv1vm06im9qmhgfc72fvqrmvqy2alh"; depends=[sp spdep]; }; ClustImpute = derive2 { name="ClustImpute"; version="0.2.4"; sha256="0ss7zsnamh8ir2wpgy6swxck93yr4dd7g7hvyzc1cv6g3k28fb49"; depends=[ClusterR copula dplyr ggplot2 knitr magrittr rlang tidyr]; }; ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; }; @@ -908,7 +916,6 @@ in with self; { ColorNameR = derive2 { name="ColorNameR"; version="0.1.0"; sha256="0gqyph3f6mhwg6zwc5bgfglpmg152a4kd2wrmp9jn18wvg8wd03g"; depends=[dplyr magrittr purrr rlang]; }; ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; - CombMSC = derive2 { name="CombMSC"; version="1.4.2.1"; sha256="1jxf59hs1px271im2dwc1653y9pfp79gwmacafcva224bvh5vi49"; depends=[]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; CombinePValue = derive2 { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.4"; sha256="0kj96i2ahq7ax1nx66jac8bbdiiyviwnzr4cr4gn0b8y580rdcwi"; depends=[]; }; @@ -932,7 +939,7 @@ in with self; { ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.9"; sha256="1xvxkj0i59fq05df6szx4k32w2447mxcx3877l2myag4x6i6c74l"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.3"; sha256="0im7wpgigkd3nwg6crnp4c3ndd3b6763f0f4v512r9a13hm48ms0"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; - Compositional = derive2 { name="Compositional"; version="5.4"; sha256="0nh4b6wkydx97sxan3w8fx8i75n5xnl4hmhvcnvzpp7v1gdsx89c"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; + Compositional = derive2 { name="Compositional"; version="5.5"; sha256="1xn62q4h8m4fgs3hi5s676jrfn7dmfm16wzkcccxr9ssp25vkmbz"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; @@ -941,6 +948,7 @@ in with self; { ConSpline = derive2 { name="ConSpline"; version="1.2"; sha256="16r0v0llj0pri69jqxribp8dpzh6yn6acpq20aaky14fyh3i4q7x"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; ConcordanceTest = derive2 { name="ConcordanceTest"; version="1.0.0"; sha256="03d780y7wik2j9l4bq50j8c3g4j3zh8wzq4al6zjch9g9krdankz"; depends=[Rglpk]; }; + CondCopulas = derive2 { name="CondCopulas"; version="0.1.1"; sha256="03jqx5ds81arfgx1w3568a85x0fa7jhp5x3sp28a8in76db08095"; depends=[data_tree glmnet nnet ordinalNet pbapply pcaPP statmod tree VineCopula]; }; CondIndTests = derive2 { name="CondIndTests"; version="0.1.5"; sha256="0km4z8wnj5msg1pmphk2fccbw1cidsxv174817lwcyii9nf5iwsm"; depends=[caTools kernlab lawstat MASS mgcv mize pracma quantregForest randomForest RPtests]; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; CondiS = derive2 { name="CondiS"; version="0.1.1"; sha256="16nhqbcmq1swlhbal3q7i11y6kk7r48nxfqgzgbyrqf9qwc7jfpd"; depends=[caret kernlab purrr survival survminer tidyverse]; }; @@ -952,6 +960,7 @@ in with self; { Conigrave = derive2 { name="Conigrave"; version="0.4.4"; sha256="02nvk5ya9gr06ai8qnjw0xq6hfbrr91b6lx9gq08dbrnmpbmyvqz"; depends=[dplyr ggplot2 miceadds mitools ppcor stringdist stringr]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.5"; sha256="082y4xxnp42xa7db5hnbc9qlvkb50wwb3wzi0my04l55a9s0ril7"; depends=[]; }; + ConnectednessApproach = derive2 { name="ConnectednessApproach"; version="1.0.0"; sha256="0lzq9x4ykwkhwfzf3lw9r28snmkfzq4zlkwdz3mn7yaglfi636lr"; depends=[frequencyConnectedness glmnet MASS moments progress quantreg rmgarch rugarch urca WeightedPortTest xts zoo]; }; ConsRank = derive2 { name="ConsRank"; version="2.1.2"; sha256="0vdjp2kawnmwz5rxp1p489l6pq61byyzpbs0w9m4rbal3whn65hf"; depends=[gtools proxy rgl rlist]; }; ConsRankClass = derive2 { name="ConsRankClass"; version="1.0.1"; sha256="02n6a3affm72vfhsjz90jl8x0qrvxsimlm1ng313s4zla515h8ap"; depends=[ConsRank janitor pracma proxy rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; @@ -959,6 +968,7 @@ in with self; { ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.1"; sha256="00p5bdiq8hj95lkr86iwyh50qw0d0d4gs9hhbzcix6lwn8dwqd3s"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="2.2.1"; sha256="0mn0lnycz5pi821q52g1njjs2pcmvv8yynr13bh237c8cashk2n3"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; + ConvertPar = derive2 { name="ConvertPar"; version="0.1"; sha256="1czw97ya73dinad0n664045s9918a21kv97bpkal40kg029vnw59"; depends=[mirt neuralnet RWeka]; }; Convolutioner = derive2 { name="Convolutioner"; version="0.1.0"; sha256="1ria4ii7zdqgrzgdx4c82dj4lg791iwy2y66fv1qyibws0ag3bhq"; depends=[]; }; CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; @@ -973,6 +983,7 @@ in with self; { CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; + CorMID = derive2 { name="CorMID"; version="0.1.4"; sha256="1jp3lhs9vyy5s4qfmv8sz5ai8ga9213nq870cb282cgjsryn8x0n"; depends=[plyr Rdisop]; }; Corbi = derive2 { name="Corbi"; version="0.6-1"; sha256="0ig0rx4llkgqvg2sx6xmzhh9sjgy4qnw22xs84gxgqidi50f2a85"; depends=[CRF igraph MASS Matrix]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; @@ -1014,7 +1025,7 @@ in with self; { CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; Cyclops = derive2 { name="Cyclops"; version="3.1.2"; sha256="13nwcksfxvjz2wh7dr500y0xy69hfl4k0ddsr6m24qh2km8spp6n"; depends=[Andromeda BH bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; CytOpT = derive2 { name="CytOpT"; version="0.9.4"; sha256="008qm2kzclp0sy4ys7y0dsc894qrn7mazz9216w97rs2sn7kcrzx"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; - CytobankAPI = derive2 { name="CytobankAPI"; version="1.4.0"; sha256="19jlpx914sqiqfba9ypylnaiswvbn641wkgzaihbjj1h61jjzihk"; depends=[curl httr jsonlite]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="2.0.0"; sha256="1i0ym5a65lvcy662siq6afd5d5iiph1w4nb6zdvywwssg5hwgk6c"; depends=[aws_s3 curl httr jose jsonlite uuid]; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; }; D2MCS = derive2 { name="D2MCS"; version="1.0.0"; sha256="14c02p9shfhvpafvm10xpy2r5x1h2pqrbj07dnz7pviqndxjp7ma"; depends=[caret devtools dplyr FSelector ggplot2 ggrepel gridExtra infotheo mccr mltools ModelMetrics questionr R6 recipes tictoc varhandle]; }; D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; }; @@ -1037,6 +1048,7 @@ in with self; { DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive2 { name="DBI"; version="1.1.2"; sha256="0n2gf5flmcrkad7p0pzsnsgwjl5006yi7lyz9lisqxhw8xykgv2n"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.7.2"; sha256="0zx58nq6l21g0sbrmrnmckw0x20i2f6lv81cczh02yrv4r968cmh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; }; + DBR = derive2 { name="DBR"; version="1.2.3"; sha256="12prvvx1smii3r4m98yyr53vkkk70l2cswv5777g1mr7wrgfbvya"; depends=[MfUSampler]; }; DBfit = derive2 { name="DBfit"; version="2.0"; sha256="1b5fy4xya5k31937ccjsq1gj9y39lh1vb48jfc0sr56isrx0c496"; depends=[Rfit]; }; DBpower = derive2 { name="DBpower"; version="0.1.0"; sha256="04wwhzlc9g6il478ax5yvh74bbb6hs29jyslkiz3k1hi25hlpkrn"; depends=[combinat dplyr GBJ kit magrittr mvtnorm]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; @@ -1067,18 +1079,18 @@ in with self; { DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; DELTD = derive2 { name="DELTD"; version="2.6.7"; sha256="1cghz224pmh06yk00jx956nlkk45p2ri81v1jjhx27xjagp4jzcs"; depends=[]; }; + DEM = derive2 { name="DEM"; version="0.0.0.1"; sha256="1b90bwk30kjp9kkyj9m4fcj5fxbsarmnqk469f5akp1j9kaa3m88"; depends=[mvtnorm]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DEPONS2R = derive2 { name="DEPONS2R"; version="1.0.3"; sha256="1h7bia4l8myjnwhjp576v6wkr0p63hcgfdmqrxhiam9xwl7kp4ar"; depends=[jsonlite raster rgdal rgeos sp xml2]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; }; - DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; }; DEoptim = derive2 { name="DEoptim"; version="2.2-6"; sha256="1qg2d4d076a99qdjfg0yyq5z1xc1zlwydwry00nj2rx0hdykjqwc"; depends=[]; }; - DEoptimR = derive2 { name="DEoptimR"; version="1.0-10"; sha256="1m9ag073i7pbxsy74vkj0n4hjn6vmyc4n0k78nmslwwwmjh7nkvp"; depends=[]; }; + DEoptimR = derive2 { name="DEoptimR"; version="1.0-11"; sha256="0nqn12n5qlyk2zsgh57dvizy5z71xgqrhrcqj6lbzybm9c7v6x0q"; depends=[]; }; DFA = derive2 { name="DFA"; version="0.9.0"; sha256="0nk8k6xxqbbk1zhq3xsm59azvkj9499vp92pjl9xygasarim90rl"; depends=[]; }; DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.3"; sha256="0qxdvxsx13b6i9qd245hsrwbg5kg4lh45kkvhn62404sx20jx7jd"; depends=[BayesFactor MVN]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; }; - DGEobj = derive2 { name="DGEobj"; version="1.0.3"; sha256="0n2i6y2vhhypn3sgsysvfpxdfvhb3fq7pz2lv71bnn1fz3lghbsx"; depends=[assertthat GenomicRanges magrittr stringr]; }; + DGEobj = derive2 { name="DGEobj"; version="1.1.0"; sha256="154p31rgy56nv0awabd32n76axwsk6i99gd5wss5a2ilza5g4iv5"; depends=[assertthat magrittr stringr]; }; DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.4"; sha256="0mad5cph7bszb7xykgsd9gk5d2zb0kwvb4yjrh84zfdnxgw8799w"; depends=[assertthat DGEobj dplyr edgeR limma qvalue stringr sva]; }; DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.2.0"; sha256="0d0c2pv4srb20ly5i43zy3h1y9yng2lz5djpprhbqxim80lv05wc"; depends=[COMPoissonReg nloptr]; }; DGM = derive2 { name="DGM"; version="1.7.4"; sha256="1f59spd4bwx4d1gbjaizjxccaslw1fvf8pxa9nrxi07j6kq9mg0h"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -1102,7 +1114,7 @@ in with self; { DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; DImodels = derive2 { name="DImodels"; version="1.1"; sha256="0767xanj4dck6hxx392fcavwsjz8d30wymxnabr5v8s7pcsmv18p"; depends=[hnp rootSolve]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.0"; sha256="1m1c9ivblk3sir6lfq0msx2vlrx37dd5v7y6003k6fmsgrfpi9fs"; depends=[AnnotationDbi boot cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne]; }; - DJL = derive2 { name="DJL"; version="3.7"; sha256="0j8535gdn5h1rjc357w30sdmarmm9sx9n62fiji191wpk1mm1dmh"; depends=[car lpSolveAPI]; }; + DJL = derive2 { name="DJL"; version="3.8"; sha256="0ry8zyr86qdb80fd9x2inrpdasfj13k2andm0wapd1k250018js8"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; DLL = derive2 { name="DLL"; version="1.0.0"; sha256="00xj6r1i4qhv0lq9ky88pw26nkc3ywhl23j9rsh2z5jn4dqpwpcg"; depends=[glmnet locpol MASS SAM]; }; DLMtool = derive2 { name="DLMtool"; version="6.0.3"; sha256="00gh4di7ngn56v5hy7l5ybj6zg71fxaqyp1chmz22arb7rvj4q08"; depends=[dplyr ggplot2 MSEtool Rcpp]; }; @@ -1115,11 +1127,12 @@ in with self; { DMtest = derive2 { name="DMtest"; version="1.0.0"; sha256="1bziiyv63lcbmd79fykjj6b63igbbw0pwiq37k7q9l5vij6jfcj9"; depends=[doParallel foreach matrixStats]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; - DNAtools = derive2 { name="DNAtools"; version="0.2-3"; sha256="10j95g9jqr7jk9ph9j3i2yblkmp4v4py8vq70rv7q56cv7dq7z32"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; + DNAtools = derive2 { name="DNAtools"; version="0.2-4"; sha256="1xcpp5jw5xq6a6ccq8jsd4d7ailv3iv8k7b1bbz531vhy9im2dzs"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; DNH4 = derive2 { name="DNH4"; version="0.1.12"; sha256="0g3ibacsbsk34b6411j3n3q9dxqq1iqdnisppmmq7s2bp94ab771"; depends=[httr rvest tibble tidyr]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; DNMF = derive2 { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; + DOEM = derive2 { name="DOEM"; version="0.0.0.1"; sha256="0xfc4wzbh7gp4c8y7141kyycjxy5avjc8wwxzqyvf70l2if7x4id"; depends=[]; }; DOPE = derive2 { name="DOPE"; version="2.1.0"; sha256="1ccg0sgxvv4c9522f2wynp9j37cnlf4gdaymxgi1jxdlikm3ls5r"; depends=[dplyr magrittr stringr tibble tidytext]; }; DOS = derive2 { name="DOS"; version="1.0.0"; sha256="0vvkwn4wfvspbk74nb6124hdx9158h6yfksib14xqq7rx7c97ad4"; depends=[MASS]; }; DOS2 = derive2 { name="DOS2"; version="0.5.2"; sha256="0lcqk2fxfl5pdnxlpppqiqnyc23jyhp1kcxwci8ilagjv4djipmw"; depends=[MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; @@ -1141,18 +1154,18 @@ in with self; { DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRHotNet = derive2 { name="DRHotNet"; version="2.0"; sha256="1hj321qy6jvdicxksnrkzwhdgzjs7pl1bxj6bm0135qjpfmj3v8m"; depends=[maptools PBSmapping raster sp spatstat spatstat_core spatstat_geom spatstat_linnet spdep]; }; - DRIP = derive2 { name="DRIP"; version="1.6"; sha256="08qyv2xwl3a70jrpmyxq37g0cryzc0ca904znyhzidmjgy13d18i"; depends=[]; }; + DRIP = derive2 { name="DRIP"; version="1.7"; sha256="1926qmxxmmhbr6hwn4jkm553h5lj84g37rgvjy36kb4b8vpnlkd5"; depends=[]; }; DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; - DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; + DRaWR = derive2 { name="DRaWR"; version="1.0.3"; sha256="1pschc911zrcgy6vmh9aylz79qfifxvxrm5gxwah7xv50plpar78"; depends=[Matrix ROCR]; }; DRomics = derive2 { name="DRomics"; version="2.4-0"; sha256="1ld83nwslbxcd63s1xhkc4380q87wnmgzx3kx5nv978zh9dqc92x"; depends=[DESeq2 ggplot2 limma SummarizedExperiment]; }; DRviaSPCN = derive2 { name="DRviaSPCN"; version="0.1.2"; sha256="1j6iss2aavrckkr3m50kcw7yrc1wqbpgmd60rw9bgk8vycd1m2iw"; depends=[ChemmineR clusterProfiler GSVA igraph pheatmap rvest xml2]; }; DSAIDE = derive2 { name="DSAIDE"; version="0.9.3"; sha256="11sz57a0mmhk3lj621wnccmcbbrxp0ipg99phfk3wb927985p0zv"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny XML]; }; DSAIRM = derive2 { name="DSAIRM"; version="0.9.3"; sha256="1igwm6zm987xjyfvwakxa5ckb1chiaykcjcambkxpjyi1b6gg6gf"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny XML]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; - DSI = derive2 { name="DSI"; version="1.3.0"; sha256="0c5phlhkwdx4w1szhn6ym2jc632mhpac417l2axl3a8jx63c1g25"; depends=[progress R6]; }; + DSI = derive2 { name="DSI"; version="1.4.0"; sha256="0fqvdpnvba2yd08i71dijwh78n5i2rjwqynpm3pa170fsa624rjh"; depends=[progress R6]; }; DSL = derive2 { name="DSL"; version="0.1-7"; sha256="05wj3zypr2kqfbka930qnwnk2r43pqi13pbs5n6lm8vdq4zjblw4"; depends=[]; }; DSLite = derive2 { name="DSLite"; version="1.3.0"; sha256="05wm02bwa4kcbg0q95368pnmnm0lpn6abk4ffliygha19d0pgpsf"; depends=[DSI R6]; }; - DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.4.0"; sha256="036ha5m6q2i8s13mdgzs7r35j88z6xk2c8bdwn090akb0fqwq52y"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; + DSMolgenisArmadillo = derive2 { name="DSMolgenisArmadillo"; version="1.4.1"; sha256="1yf67iw5bqv5a5nhg1546ydmb3mr47nmxynkmn38mdz6p72sc2ic"; depends=[base64enc DSI httr MolgenisAuth stringr urltools]; }; DSOpal = derive2 { name="DSOpal"; version="1.3.1"; sha256="1f5lh3j7yfxa5rpcfknwqralnn108mg8813k8sclav8f2y3qh9pi"; depends=[DSI opalr]; }; DSSAT = derive2 { name="DSSAT"; version="0.0.6"; sha256="13h2vslghy0127ycd9s1fynfqxh52vr3zbrryh20r7q0fzlka3fi"; depends=[dplyr glue lubridate purrr readr rlang stringr tidyr]; }; DSWE = derive2 { name="DSWE"; version="1.5.1"; sha256="129dx5sf938pqpbqbar6zwma58m59if45pp7x6zwvnh2n03gaxy8"; depends=[BayesTree e1071 FNN gss KernSmooth matrixStats mixtools Rcpp RcppArmadillo]; }; @@ -1160,7 +1173,7 @@ in with self; { DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.21"; sha256="1yhlph9h8z78wqjddv598l2xrqpp605d70cxfb69m53hanw4hmzn"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.22"; sha256="16ah0h60ygvj49cs6cxxhdxx68cs6v6m35w5r1j5h8nxz171q61z"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-4"; sha256="1ddmih8cxbgc1p4m0sm8gdbnf0d3ka8z7014zd4aykz75j3pr002"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; @@ -1178,7 +1191,7 @@ in with self; { DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DTwrappers = derive2 { name="DTwrappers"; version="0.0.2"; sha256="028n1211h9gmv050xfiw347x59gykb6ndvd371fdf53bbkqirqa4"; depends=[data_table]; }; DUBStepR = derive2 { name="DUBStepR"; version="1.2.0"; sha256="0kma87hqcng3i0ys9r34kl6af8q1i9avmdv9awf0rdrlqyabnrn1"; depends=[Matrix matrixcalc qlcMatrix RANN Seurat]; }; - DVHmetrics = derive2 { name="DVHmetrics"; version="0.4.1"; sha256="1c98847b5pgmhcszdnllpg3iq88693xjss2nxgr9dya52x1kbyaj"; depends=[DT ggplot2 KernSmooth reshape2 shiny]; }; + DVHmetrics = derive2 { name="DVHmetrics"; version="0.4.2"; sha256="0dxbjqiqhzjrv867qhxmqavzklq0j3qjv4qwdacyrq8faz82vhv7"; depends=[DT ggplot2 KernSmooth reshape2 shiny]; }; DWBmodelUN = derive2 { name="DWBmodelUN"; version="1.0.0"; sha256="1m71fx9l2rq27d2q5hiqxiyljvf5wjcfkcblqw19rpiixrinv4va"; depends=[dygraphs htmltools ncdf4 raster rgdal]; }; DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; }; DWLasso = derive2 { name="DWLasso"; version="1.1"; sha256="1i8j8wjfvg69ldr8ahz1zv3m2wgxd701iph94ad22zs9qwqfg16z"; depends=[glmnet hglasso Matrix]; }; @@ -1190,7 +1203,6 @@ in with self; { DarkDiv = derive2 { name="DarkDiv"; version="0.3.0"; sha256="0cjf5rpn4myd21rh04bk2gjk65rjx77mn8mxy4ym704fiycrsj87"; depends=[vegan]; }; Dasst = derive2 { name="Dasst"; version="0.3.3"; sha256="0nrcvcfzr2y1jc984rpi3fmggns65sphc6nqr9l91h5qvpdcw7cl"; depends=[]; }; DatAssim = derive2 { name="DatAssim"; version="1.0"; sha256="120gazyyxda9faydv2lyqgvflhqi2fhih1szq0sy5v1gh4xb0hhy"; depends=[Rcpp RcppArmadillo]; }; - Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; DataEditR = derive2 { name="DataEditR"; version="0.1.5"; sha256="0kwjgr6kaai42mhcljjs6i93m966x45gic5jgqsrkgfwjmmgf043"; depends=[bslib htmltools miniUI rhandsontable rstudioapi shiny shinyBS shinyjs]; }; @@ -1286,8 +1298,8 @@ in with self; { DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; - DistPlotter = derive2 { name="DistPlotter"; version="0.0.1"; sha256="02260wl216zq69l3acllcx026y3zy2cxyhxgfp7in7wdd4c3jxj2"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; - Distance = derive2 { name="Distance"; version="1.0.4"; sha256="14sdkggacwv3dl8wd2vspy9vn1psz8yw2nvs12c2vjkgxa75dgcl"; depends=[dplyr mrds rlang]; }; + DistPlotter = derive2 { name="DistPlotter"; version="0.0.2"; sha256="0aws4qs6802y42m07ca9m4i0lza282g6kfzx64q652y52md862gk"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; + Distance = derive2 { name="Distance"; version="1.0.5"; sha256="1c8xrv163l9i45ndkbvm8kx3wkcjkmrfz3686kr1mz0xpjycny34"; depends=[dplyr mrds rlang]; }; DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; }; DistributionOptimization = derive2 { name="DistributionOptimization"; version="1.2.6"; sha256="0pp0f7c9szyx426bnnz4fz4vh5q73m8x896z6pqgx04b6v445361"; depends=[AdaptGauss GA ggplot2 pracma]; }; @@ -1332,7 +1344,7 @@ in with self; { DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; DynamicGP = derive2 { name="DynamicGP"; version="1.1-7"; sha256="1fv7lb01qrgpl0a46360s0iqs7wlyqsda4hdm66vfyqr5pygmikv"; depends=[lhs]; }; - DynareR = derive2 { name="DynareR"; version="0.1.1"; sha256="1b7m9z09ps9idj1arza4ka1silrf8rm3gk154px0z3612ls3a3ir"; depends=[knitr]; }; + DynareR = derive2 { name="DynareR"; version="0.1.2"; sha256="0n53znw0xfzdfd7kzf2kxph3q5zsybwn003zx21hga5c0xq2hsca"; depends=[knitr]; }; DysPIA = derive2 { name="DysPIA"; version="1.3"; sha256="0ih8sl89h6xbmmjjsbxcvgp6wqk7f1wqzwkc43k3i5w7fgb0hlpc"; depends=[BiocParallel data_table DysPIAData fastmatch parmigene Rcpp]; }; DysPIAData = derive2 { name="DysPIAData"; version="0.1.2"; sha256="1i4z9xhnzih7jnj3l1d6wpgfsayb452sh4q99w2npg1iipsjb1vl"; depends=[]; }; E4tools = derive2 { name="E4tools"; version="0.1.1"; sha256="1kmj1fddybjia9ninhcy75kdmq152zjw7s24chpqr5wsblffr3yx"; depends=[accelerometry anytime BBmisc chron data_table DataCombine doParallel doSNOW foreach ggplot2 hms scales signal]; }; @@ -1366,14 +1378,13 @@ in with self; { EESPCA = derive2 { name="EESPCA"; version="0.5.0"; sha256="1vkyds5mpiaccg18i6483zymikadxb7mq4gsqh85r291zvllb7wl"; depends=[MASS PMA rifle]; }; EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.1.2"; sha256="0p1zkfwjch9y39r7hjccjk7vfbnfwpdak6jfjs1sdpqkjqiw3r86"; depends=[ggplot2 PCovR psych reshape2 scales]; }; EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.7.4"; sha256="0798kmgh1d7k389kgw31qg617vhqqgz3ychw7ji4xqkxjadvm34n"; depends=[EFAtools polycor psych]; }; - EFAtools = derive2 { name="EFAtools"; version="0.3.1"; sha256="1s0x8vp18yixn1vscmad8bgmp6nvn8zxx8xx435bmdlxml73c8xd"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; + EFAtools = derive2 { name="EFAtools"; version="0.4.0"; sha256="15cnwma6xbq1hq28cj22i3gq6rd78saxn3nl1cvarwvrlfh75a2f"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; EFAutilities = derive2 { name="EFAutilities"; version="2.1.1"; sha256="0kdwdjv4c9rfy49qs7a4134vwa2sm2pcam17a3xii2dq8mghg1za"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; EGAnet = derive2 { name="EGAnet"; version="1.0.0"; sha256="0mr63x5gx8yy9gp19glvqcsdmxbd29mnv4v29kjpfr21ij46h60a"; depends=[dplyr fitdistrplus GGally ggplot2 ggpubr glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot wTO]; }; EGRET = derive2 { name="EGRET"; version="3.0.7"; sha256="1fxpcdsq7njf1hjy3a4i0fx0ah9v7jzmdwg4c7009nikyhx5ri6x"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; - EHR = derive2 { name="EHR"; version="0.4-4"; sha256="0b42ny3xc936qgbfgibywpmancrbdvkcwwhy55lbqlm8xhzyr6s8"; depends=[data_table lubridate pkdata]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; @@ -1388,7 +1399,6 @@ in with self; { ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; }; EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; }; EMAtools = derive2 { name="EMAtools"; version="0.1.4"; sha256="0gx55ddw7dz1lm599i0gj15dlc3m58a8rf223hiykszb5c8bi372"; depends=[anytime DataCombine ggplot2 lmerTest plyr sjstats]; }; - EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; }; EMCluster = derive2 { name="EMCluster"; version="0.2-13"; sha256="0d0zb6bppgbd5kyfzzckxk6w8v4gjvzk6k16xbhvq8gzcs7w4lhf"; depends=[MASS Matrix]; }; EMD = derive2 { name="EMD"; version="1.5.9"; sha256="0lga27nl7c3h02xrbb2hcwlb9dyli340v0hb3vwwzqrhmr0fl806"; depends=[fields locfit]; }; EMDANNhybrid = derive2 { name="EMDANNhybrid"; version="0.1.0"; sha256="0mm5zfkrja9pz58psp7b6r1lpixaa9y685xxv9srv9l9cl8d892j"; depends=[EMD forecast nnfor]; }; @@ -1427,6 +1437,7 @@ in with self; { ETAS = derive2 { name="ETAS"; version="0.4.9"; sha256="11sv5slr3s6w82ksgbw0qlzi9palznbzprq2n9iiifxz6ff5drvd"; depends=[fields goftest lattice maps Rcpp spatstat_core spatstat_geom spatstat_random]; }; ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; + EVI = derive2 { name="EVI"; version="0.1.1-4"; sha256="1lmcz8k88aahqdjw5nw3pgns9nn1dy30hkm505c1ilaiziwpdi6d"; depends=[cowplot ggplot2]; }; EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; EWGoF = derive2 { name="EWGoF"; version="2.2.2"; sha256="19gd9grjjdv6hilqj41g5qhz7m0ga40q88clwggbp5f0f1yd5sym"; depends=[Rcpp]; }; @@ -1451,7 +1462,7 @@ in with self; { EcotoneFinder = derive2 { name="EcotoneFinder"; version="0.2.3"; sha256="1liqjakzg4c5kgjiir8i4fp4ax0737lfwriz277crh9p3jn3dgmh"; depends=[cluster colorspace corrplot e1071 ggplot2 igraph philentropy plyr purrr qgraph reshape rlang Rmisc vegan vegclust withr]; }; Ecume = derive2 { name="Ecume"; version="0.9.1"; sha256="093yx24hckgwvkdjgir33lkc7hhiv4is8a4a7fdcrp46iszx0b4i"; depends=[caret dplyr e1071 kernlab magrittr pbapply spatstat spatstat_geom transport]; }; EdSurvey = derive2 { name="EdSurvey"; version="2.7.1"; sha256="0pb2s6vn2skva54q06lh89pbkinvs2kil0sv3fj51yg3h6pzbp93"; depends=[car data_table Dire Formula glm2 haven LaF lfactors lme4 MASS Matrix NAEPirtparams NAEPprimer quantreg readxl tibble wCorr WeMix xtable]; }; - EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-4"; sha256="17mhp4acj0myr2b54hgbb3wi5j6a6q999nqr9lwcbx3plyrwlljl"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; + EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-5"; sha256="118qddm19x2qv0zh642vfljlnd0p8lv1kz6k8jh33gf3sgl0rhd4"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; }; EffectStars = derive2 { name="EffectStars"; version="1.9-1"; sha256="131w5bdc615gaa2czi4wyc2f96jcg24ahcmggajrvyhxmi6rag5x"; depends=[VGAM]; }; EffectStars2 = derive2 { name="EffectStars2"; version="0.1-3"; sha256="0yh4krqjh1jb7gjxb9z4f5bzarps0g9jfqbbva782a881dhcdl1x"; depends=[miscTools VGAM]; }; EffectTreat = derive2 { name="EffectTreat"; version="1.1"; sha256="1kw1vq9y1q3xyiqsk855wjn9jqkzdh6h4xklbl9kvbqsvvhhsgkz"; depends=[]; }; @@ -1460,7 +1471,7 @@ in with self; { EgoCor = derive2 { name="EgoCor"; version="0.1.0"; sha256="197wf7v51qf2wc2gks68v3kpkcv0fmrbj3wrksixh1sphbl52rig"; depends=[geoR lme4 Rdpack shiny SpatialTools]; }; EigenR = derive2 { name="EigenR"; version="1.2.2"; sha256="02cg898hm2byhnbfihg8mnygjsfpyrpq4y3lw2dnrglcj75qr71b"; depends=[Rcpp RcppEigen]; }; EleChemr = derive2 { name="EleChemr"; version="1.2.0"; sha256="1wr2lkaf56qxsnqi7mgbgzy72lhkr0xlr1w1l9hy1dpmmqcqw7l3"; depends=[ggplot2]; }; - ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.1"; sha256="00cxyn6w9zy993lqyyn9yjvpw7h4wckp63s3apf1jv8b09l0kdn5"; depends=[Matrix pcaPP Runuran]; }; + ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.2"; sha256="0prc83vlzxyzmi0n3y1f5j7r7mc2dzm7gs1q3s7n501y1lgmb11l"; depends=[Matrix pbapply pcaPP Rmpfr Runuran]; }; EloChoice = derive2 { name="EloChoice"; version="0.29.4"; sha256="1g8ivvnv16c2gniwd9xa9z89bm4rac0nrg3mcg1risgf9yk4rgm5"; depends=[psychotools Rcpp RcppArmadillo Rdpack]; }; EloOptimized = derive2 { name="EloOptimized"; version="0.3.1"; sha256="09bg1gm8jhjj0r7yzdgi2zlyavrizgiljwh26mpb6ng6p5mkliid"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang]; }; EloRating = derive2 { name="EloRating"; version="0.46.11"; sha256="09nh3ia4s3c9yjhw0f0haqb26fryfc4lf9rgfcbqqzzwgdr1invj"; depends=[network Rcpp RcppArmadillo Rdpack sna zoo]; }; @@ -1515,6 +1526,7 @@ in with self; { EuclideanSD = derive2 { name="EuclideanSD"; version="0.1.0"; sha256="1w5s1zkb81v150nvaygvyla2x0vh4c99vd5jw53jcq68sv9hby3i"; depends=[shiny]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; + Evacluster = derive2 { name="Evacluster"; version="0.1.0"; sha256="01nxclrp90qhlnxl0yf2srppglic6m3f7pl35h62r6kxic0lrzhs"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2021.2-1"; sha256="0ws7x0dkzb3h2m801dkzx2as146whm63mcipy4iia90jd9944zir"; depends=[dse setRNG tfplot tframe]; }; EvaluateCore = derive2 { name="EvaluateCore"; version="0.1.2"; sha256="0yqv5srnbczdx8h3cxvj6hfas0436xc8hz698zi7ypms34r9c1ly"; depends=[agricolae car cluster dplyr entropy ggcorrplot ggplot2 gridExtra kSamples mathjaxr psych Rdpack reshape2 vegan]; }; EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; }; @@ -1522,9 +1534,9 @@ in with self; { EventDetectGUI = derive2 { name="EventDetectGUI"; version="0.3.0"; sha256="02gwgbp692cfmf933jg1f7h4gghhc1v2cswz7rpcazm8h39mc4wh"; depends=[DT EventDetectR ggplot2 plotly shiny shinyBS shinydashboard shinyjs XML]; }; EventDetectR = derive2 { name="EventDetectR"; version="0.3.5"; sha256="0wx3bcs8n95fmyc5vnlrwd75bzqqvy6czb9bsbp04g3770c5ja0r"; depends=[forecast ggplot2 gridExtra imputeTS neuralnet]; }; EventStudy = derive2 { name="EventStudy"; version="0.37"; sha256="1bf7ngwl3gxq3gi2s9z2c4pd0d2gjh9y9vrwzay6x66981sa84h9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyquant tidyr]; }; - EventWinRatios = derive2 { name="EventWinRatios"; version="0.1.0"; sha256="10awz9i110ihq20jn06qmmjyj4xvdvj9lyvf30r9brzrnyjjff3h"; depends=[]; }; + EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.2.3"; sha256="1qx8l5fwnwigpz8b25i84h9wnqb6lclv03r251ww7j3gd7mybd76"; depends=[BeastJar coda Cyclops EmpiricalCalibration ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; - EviewsR = derive2 { name="EviewsR"; version="0.1.0"; sha256="1chg3g1jsdflgby2bksqw2nf27xin4nayqigxkji4zwbspp6m8ai"; depends=[knitr]; }; + EviewsR = derive2 { name="EviewsR"; version="0.1.1"; sha256="104kn9k3bbzwlp3jn9b7m512i2p6vfzyhcvznn8gbzzsm7dy8jsi"; depends=[knitr magrittr]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; @@ -1568,6 +1580,7 @@ in with self; { FAOSTAT = derive2 { name="FAOSTAT"; version="2.2.3"; sha256="12wjcjyjdw8jgla9yqddr3ibi6v47lfdlnyf5s5d8ms3ck6ic8sl"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO XML]; }; FARDEEP = derive2 { name="FARDEEP"; version="1.0.1"; sha256="0blvjakcpkh9vpxryk7qyaqnija0r375ckv37kjlr34xg8pg9qnm"; depends=[nnls preprocessCore]; }; FASeg = derive2 { name="FASeg"; version="0.1.9"; sha256="0lazx8dyycyycr8467m9rkxkxhp4r2w737kpkb40y59wncmbvkik"; depends=[]; }; + FAVAR = derive2 { name="FAVAR"; version="0.1.2"; sha256="0nkvzlcx2glx0m3gzvpqgzimck5b00crddrxy3jjndv00q45h5kd"; depends=[bvartools coda doParallel dplyr foreach ggplot2 magrittr matlab Matrix MCMCpack]; }; FAdist = derive2 { name="FAdist"; version="2.4"; sha256="166w9i8fgklx12jiq4n7l081znmdi6yvazhlxny4rgqif0z2kr9q"; depends=[]; }; FAmle = derive2 { name="FAmle"; version="1.3.7"; sha256="1g6jacbphbfqn0kkfgdv0g9v8xnzx70872byy0rxp5g2ags6hj2b"; depends=[mvtnorm]; }; FAwR = derive2 { name="FAwR"; version="1.1.2"; sha256="1x90wvp0w7fhid7i5160b4fiv4xn5mpvy33zjzy0mvqvp0yp8xf0"; depends=[glpkAPI lattice MASS]; }; @@ -1578,14 +1591,13 @@ in with self; { FCO = derive2 { name="FCO"; version="0.7.2"; sha256="1bavlkrd0957lxv3n8wqv83sxddpihrwr91f2sgshwlczksl05kn"; depends=[checkmate data_table lavaan semTools]; }; FCPS = derive2 { name="FCPS"; version="1.3.0"; sha256="0cz04pjhps7grnvx50gnpmhlp4rvl9xx1dnsabn2pg075y5r5bgk"; depends=[DataVisualizations ggplot2 mclust]; }; FCSlib = derive2 { name="FCSlib"; version="1.3.0"; sha256="1191ba6dwpakcdnbcq61zm5xq24isxjnn98nmvk67fpf1ycw70w9"; depends=[bitops fields stringr tiff]; }; - FCVAR = derive2 { name="FCVAR"; version="0.1.1"; sha256="1vnfy3485mm29w0hzkmpr50yc9prmgha9hxxb7k9b9li3pzyhl17"; depends=[fracdist pracma]; }; + FCVAR = derive2 { name="FCVAR"; version="0.1.2"; sha256="0ci0y3mpwiv234km8fd2qmkfnk0mh8s7vn4ai45pfrm0wwhv3akw"; depends=[fracdist pracma]; }; FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; - FDRestimation = derive2 { name="FDRestimation"; version="1.0.0"; sha256="1m4k71bsfj2sbsnyqi1s9p5wxbvvn24w98lqwms6z4irc0sk6r3g"; depends=[Rdpack]; }; + FDRestimation = derive2 { name="FDRestimation"; version="1.0.1"; sha256="083w50g8n03l0wigywm90xyp8xjxbsbbicv0a5g2wmbdd70m4nay"; depends=[Rdpack]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDX = derive2 { name="FDX"; version="1.0.4"; sha256="15qjy216n87ylk8kwjhgz0mwdhgy57xn2l8x38ffgff3n3v0gwcn"; depends=[DiscreteFDR PoissonBinomial pracma Rcpp]; }; - FDboost = derive2 { name="FDboost"; version="1.0-0"; sha256="1227fda2m8lsq3cndv0xgbgbcfdxhc4fjiyj2dmha1z4sycd7a28"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; FEA = derive2 { name="FEA"; version="0.0.1"; sha256="0rg7l5hmaksiz5hg8llwa5kk17by29qvqncyksv16bf8rsjlm732"; depends=[geometry geosphere MASS ptinpoly sp]; }; FENmlm = derive2 { name="FENmlm"; version="2.4.3"; sha256="1a205a4iv54haixanyzx210lzqg7cnryjvqayvkdj1lhmdql4anw"; depends=[Formula MASS numDeriv Rcpp]; }; FER = derive2 { name="FER"; version="0.94"; sha256="0319dz0qvk8s9cfngqas3j212bw0f4rzw3gqcd7r7sl0249dla7p"; depends=[statmod]; }; @@ -1604,7 +1616,7 @@ in with self; { FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; FKF = derive2 { name="FKF"; version="0.2.3"; sha256="0hw8gfmnx05cajbfiffqsbgq164qaf16qsa7wa133pzkpl6b0f0f"; depends=[]; }; - FKF_SP = derive2 { name="FKF.SP"; version="0.1.3"; sha256="0pbqpaddk5yhh0lycqncfc029md4if93p07jvnixjn0mrraxj6b5"; depends=[curl mathjaxr Rdpack]; }; + FKF_SP = derive2 { name="FKF.SP"; version="0.2.0"; sha256="0xnr3k98gvk8svdpdi8vpbdxazg0qd0rfq10s21g2wcjk16xpp0f"; depends=[curl mathjaxr Rdpack]; }; FKSUM = derive2 { name="FKSUM"; version="1.0.0"; sha256="1a0fk3k5mmkv26lmf14wiaj0hq19m92681a1p5ldnzpqr54w9igz"; depends=[MASS Matrix rARPACK Rcpp RcppArmadillo]; }; FLAME = derive2 { name="FLAME"; version="2.1.1"; sha256="013kxp6zjw8qzdq3750x109rhbmjn10q32wgxsh7ajiflwhj3f1i"; depends=[glmnet gmp]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; @@ -1634,7 +1646,7 @@ in with self; { FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.3.1"; sha256="1d8ya1pqy1zc9hxp7s211n0wa3n63jgpxh5ngysbh0dn488l8vgg"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FRK = derive2 { name="FRK"; version="2.0.4"; sha256="119r0hnmffmlj27v0bwcrq99k4lg5dzws4m2nskddr4v37wpwpv8"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; + FRK = derive2 { name="FRK"; version="2.0.5"; sha256="1khpfyvw2z45jawrbf3c0kf5xgyvrf53xx84j1qfj96q4n76568i"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.3"; sha256="10ax191r71gny976hgxgs0gz2548sjjaq3hqy7xkzbj2mcmjq41w"; depends=[car dunn_test lmtest plotrix withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.9"; sha256="1ycllz83lmbd93fdrkj0sjg8bygivp60fv768kk0diamjb16xlmq"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2020.11-18"; sha256="09l7zvmbvmbcr5pxizdhs5fn79r6cl4ic0hsz2bazdymsqv3s3nm"; depends=[kyotil reticulate]; }; @@ -1718,7 +1730,7 @@ in with self; { FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.2"; sha256="1jgqc7m3cvyvxlpkvcqqyfmjl8harsb4kl7msk3qd8mn4qjvvyms"; depends=[MASS]; }; FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; - FlexDotPlot = derive2 { name="FlexDotPlot"; version="0.2.1"; sha256="1h5mxddvxqqbi3mzyk8hblviyw55s6ly6vqqcilznh328wl0qg85"; depends=[bsplus colourpicker dendextend DT FactoMineR ggdendro ggforce ggplot2 gridExtra grImport2 htmltools magrittr reshape2 scales shiny shinydashboard shinyWidgets sisal]; }; + FlexDotPlot = derive2 { name="FlexDotPlot"; version="0.2.2"; sha256="0526cnbq4a34k96b99x8i1pcdn1a70fvc9lagq7yd7bsq6fv2gvs"; depends=[bsplus colourpicker dendextend DT FactoMineR ggdendro ggforce ggplot2 gridExtra grImport2 htmltools magrittr reshape2 scales shiny shinydashboard shinyWidgets sisal]; }; FlexGAM = derive2 { name="FlexGAM"; version="0.7.2"; sha256="04xbglg9vli18fd24k1qyvbl7svp70k67ig3jiss96fgkgbi6w7c"; depends=[MASS Matrix mgcv scam]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-5"; sha256="1404cn3bhcdr3mjhpr072zcyl0wnksarsg2sry5d1scsmrn4xq83"; depends=[nlme]; }; FlexReg = derive2 { name="FlexReg"; version="1.1"; sha256="0p52qszn5vvci57f4jxynm1kiwdd105cg096ijg6w481v24a0qb3"; depends=[bayesplot BH faraway Formula ggplot2 loo Rcpp RcppEigen rstan rstantools StanHeaders]; }; @@ -1728,7 +1740,6 @@ in with self; { FlowScreen = derive2 { name="FlowScreen"; version="1.2.6"; sha256="1s9xyrvfsgrl2zxm2an5qj3rs1qx7v7j8wc83jzl28pkwa5xr351"; depends=[changepoint evir zyp]; }; FluMoDL = derive2 { name="FluMoDL"; version="0.0.3"; sha256="0vp3w6hpph6svz8940w9yk9c5iv4n9mj94f9si1ks0xjbi948rqd"; depends=[dlnm mvmeta tsModel]; }; FlyingR = derive2 { name="FlyingR"; version="0.2.0"; sha256="0smishimssanzssndbwh9d276sq8vdldpzb3ww9c4nlwypxjmr8z"; depends=[kableExtra knitr Rcpp rmarkdown]; }; - FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; }; FoReco = derive2 { name="FoReco"; version="0.2.2"; sha256="01ak3dpvsmlvzb2k714scxsaavihfjsi4gwsqyv0hxpq457sd3rr"; depends=[cli corpcor mathjaxr Matrix osqp]; }; ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; @@ -1771,7 +1782,7 @@ in with self; { FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.1"; sha256="0dli2r4w8s8wx6i3y31lpy181l1awx8qg8gvnn2yhpcija389zjs"; depends=[ttutils]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.2"; sha256="0pgfx78xyq37ffaxvyxv4fh6p3dfxkgw2xi5p35hjv1hgsmi17s8"; depends=[]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1798,7 +1809,6 @@ in with self; { GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GB2group = derive2 { name="GB2group"; version="0.3.0"; sha256="1dbyc7izyggfrsq2gj7rwff5qjyy6bx6ip09xvbj73xqczv8fkcd"; depends=[GB2 ineq minpack_lm numDeriv]; }; GBJ = derive2 { name="GBJ"; version="0.5.3"; sha256="12lsddkcxz37hn2fvjq158wb1bc6b3hx6wj8q8nj21zpmyl3n2qh"; depends=[BH mvtnorm Rcpp SKAT]; }; - GBcurves = derive2 { name="GBcurves"; version="0.1.6"; sha256="1agd7nkgahhwcc5p1zybnd6xws0kr0ggk70aznxfn2nijhw7sqwr"; depends=[curl functional httr magrittr readxl rvest xml2 xts]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; GCD = derive2 { name="GCD"; version="4.0.7"; sha256="1259z76hajapzzq75fas2sq19r0wapn1ybghdaqdc6dksifdz6fv"; depends=[raster]; }; GCPBayes = derive2 { name="GCPBayes"; version="3.1.0"; sha256="1239pr1i9q4sfy7az6jc8sh10xil5m2a70v9sm29ll53vsza73jj"; depends=[arm gdata invgamma MASS mvtnorm postpack Rcpp truncnorm usethis wiqid]; }; @@ -1809,10 +1819,8 @@ in with self; { GD = derive2 { name="GD"; version="1.10"; sha256="1sy77yxnwh2n48zahh498v30nl3hivrsmyp0jf3gyyzhxm8z1n5l"; depends=[badger]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; GDAtools = derive2 { name="GDAtools"; version="1.7.2"; sha256="0rqrc9andckh4nf8s87gwkpw2kgc2jsynsvsy1xlnvfp753d4dxp"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; - GDELTtools = derive2 { name="GDELTtools"; version="1.5"; sha256="1lhsyf7kd1lnx2dgifmrd89yl95sf9k6ay19dll2p8b9h3vs7hci"; depends=[dplyr plyr TimeWarp]; }; GDINA = derive2 { name="GDINA"; version="2.8.8"; sha256="1slq1npsq8s8aghnrpm6vvc6kxj4svz0kr2x0akblndrcr25wxjr"; depends=[alabama ggplot2 MASS numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; - GDPuc = derive2 { name="GDPuc"; version="0.8.0"; sha256="0nbqhqddz5k3rcwif69pzf7cbkg5ycwvlscx470c9rhzrdffsm16"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; - GE = derive2 { name="GE"; version="0.2.6"; sha256="0vxrw08851n6vfqsvr11746l36n8m4sq5qyhgw1yrcj5g4qwnbf9"; depends=[CGE data_tree DiagrammeR]; }; + GDPuc = derive2 { name="GDPuc"; version="0.9.0"; sha256="02rd1a5nj8gd8daclr2772pw90r8q042mx25gxsxykfsq75snfni"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1854,7 +1862,7 @@ in with self; { GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.6"; sha256="0rpq8ng9skxg6qzhainsc9jkznql6glq65a1bdbrkc6pwx3pc7lc"; depends=[circular raster rgdal rgeos sp]; }; GIplot = derive2 { name="GIplot"; version="0.1.0"; sha256="1asyd4f76xg84jnwa8kxcw5z6ch3kpy0p7yigmyga94908gylpxj"; depends=[]; }; - GJRM = derive2 { name="GJRM"; version="0.2-5.1"; sha256="1d3adl7qbjw211samdqwqjbkfq22md6gj9s0n9hapj75f0ydfvai"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; + GJRM = derive2 { name="GJRM"; version="0.2-6"; sha256="0yb7bwxj1gar9zj61vbfls5vzyj23bdjrikbx6g2m2c31a8f3azq"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.7"; sha256="1w5ahwbnz9xsn3rdxzcxxvc6m5cgq46nln3i5v8vp4imrs8aafb3"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; @@ -1866,7 +1874,7 @@ in with self; { GLMpack = derive2 { name="GLMpack"; version="0.1.0"; sha256="15bpw42y999ljdw8ka2ysrrm0y73xz37wwi3j67i01wafipq82xy"; depends=[AER censReg effects foreign lme4 lmtest MASS Matrix nnet pBrackets plm pscl sandwich]; }; GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; }; GLSME = derive2 { name="GLSME"; version="1.0.5"; sha256="18gixzg8b8yql91dhv8xsrcrxdix0kr0qgmiva0hwmyzpsn6rqam"; depends=[corpcor mvtnorm]; }; - GMAC = derive2 { name="GMAC"; version="3.0"; sha256="0c2cfpr8dik7j5br87hkvswrhqzj5vcna54gw6ffdf1rk9rz9j22"; depends=[]; }; + GMAC = derive2 { name="GMAC"; version="3.1"; sha256="1vrx6lqnm60g8nk44yhl55q2b7xqchxq3qzfrrf59sjk7whpcy5h"; depends=[]; }; GMCM = derive2 { name="GMCM"; version="1.4"; sha256="13ds8da7lqkvm1mz75440hmn9smi9pznb8bknmckg8vd3fc70f6x"; depends=[ellipse Rcpp RcppArmadillo]; }; GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; GMDH2 = derive2 { name="GMDH2"; version="1.6"; sha256="0zc1xvg3f3cdspr1d2lx60n93hhnqrp7653gf27krknf9dmsf5zg"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; }; @@ -1887,7 +1895,7 @@ in with self; { GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; - GOxploreR = derive2 { name="GOxploreR"; version="1.2.4"; sha256="0s22ff2rhxny5r16aryg0qbznx9k1gzgvag7zmpcp783yj7p0n8w"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; + GOxploreR = derive2 { name="GOxploreR"; version="1.2.5"; sha256="00ymwl76hwab1iic0g08zrwx76bfc7myks3nivjim1zxw137l144"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; GPBayes = derive2 { name="GPBayes"; version="0.1.0-3"; sha256="0zihn6489xk5ckah6ax5dmzqsdwhpdfwm1zv8ihrrhk93z5fgzar"; depends=[Rcpp RcppEigen RcppProgress]; }; GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-5"; sha256="0v4n8m3pcqxjyvli2wag3frzbqxpk9bjl8zkyz6sq2cwypv5wvyv"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; @@ -1905,7 +1913,6 @@ in with self; { GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.3"; sha256="1c870dfbpswx78n4s1v6zy0l1qknrs9335af0z01v1miyrmi95gd"; depends=[deSolve float rgl]; }; GPoM_FDLyapu = derive2 { name="GPoM.FDLyapu"; version="1.0"; sha256="1hpgiwh7b50gazp1msjsh2840b91wfrxhl2l45lxg6jr1m34q8pj"; depends=[deSolve GPoM]; }; - GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPvam = derive2 { name="GPvam"; version="3.0-7"; sha256="1kpz9v2yvinzchmq4cbb5hshihr7lkgwi5dnyxilg5qalbk7bwbk"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; GPvecchia = derive2 { name="GPvecchia"; version="0.1.3"; sha256="1rabini84r5fvl630wkcikjzll89mamc6pqiilvcmsik5c6ymz3w"; depends=[BH fields FNN GpGp Matrix Rcpp RcppArmadillo sparseinv]; }; GRANBase = derive2 { name="GRANBase"; version="2.6.20"; sha256="0z9378qimdpxrslib2avimik3xqd41angfg12j8vmcbg7zh3binh"; depends=[covr desc dplyr GRANCore htmlTable jsonlite markdown RCurl sendmailR stringi switchr]; }; @@ -1919,7 +1926,7 @@ in with self; { GRPtests = derive2 { name="GRPtests"; version="0.1.2"; sha256="12w0vskf1n31zspk3vjgdlhrjwpsysvwwr0l0vm57j6faqc31i3s"; depends=[glmnet MASS randomForest ranger RPtests]; }; GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; - GSA = derive2 { name="GSA"; version="1.03.1"; sha256="05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1"; depends=[]; }; + GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; @@ -1933,11 +1940,12 @@ in with self; { GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSelection = derive2 { name="GSelection"; version="0.1.0"; sha256="052vh1haxlzbh3c5i24nrwphapik1y8ribmh6q4axd447ggc0ff9"; depends=[gdata penalized SAM]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; + GTDL = derive2 { name="GTDL"; version="1.0.0"; sha256="1dryw7d9qnsa3wibk9kgkldwb660arzdw024p62a123v7i932jz0"; depends=[survival]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; }; - GUILDS = derive2 { name="GUILDS"; version="1.4.1"; sha256="1j0nhrd2anxmd35v5xz1y3bq8w757qif7h69r5wh0yphrkcxqn4v"; depends=[pracma Rcpp subplex]; }; + GUILDS = derive2 { name="GUILDS"; version="1.4.5"; sha256="0pxajjrvihvk4yjr9h7yx85daxsbkapzf9dw6xxhxb1idnyihirm"; depends=[nloptr pracma Rcpp]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; GUTS = derive2 { name="GUTS"; version="1.2.3"; sha256="1hmd8i21v81k798la5gdmfah1jqb3v891vxm22s41vvxcz0iw1j0"; depends=[Rcpp]; }; - GUniFrac = derive2 { name="GUniFrac"; version="1.4"; sha256="1dya9shxcd1xbwhlk1vqpxag2vnwzca2lddcy1kfn8yjrws8slk8"; depends=[ape dirmult foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest Rcpp rmutil statmod vegan]; }; + GUniFrac = derive2 { name="GUniFrac"; version="1.5"; sha256="0lkj8mjsrhshgs25wchwjq09yg3m1j9dbs6c4gbqkny870wppmba"; depends=[ape dirmult foreach ggplot2 ggrepel MASS Matrix matrixStats modeest Rcpp rmutil statmod vegan]; }; GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; @@ -1947,7 +1955,7 @@ in with self; { GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; - GWPR_light = derive2 { name="GWPR.light"; version="0.1.1"; sha256="130mndfvxq8mr4ml57pr5xp3wv1b6z99f965pw6fnrgwl4hyl584"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; }; + GWPR_light = derive2 { name="GWPR.light"; version="0.2.0"; sha256="1nkli4jiqkrf7gqs2pjmsnq6zm6gg9dij3gmimnynbajfj0ypil7"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.4"; sha256="13g91bx7b0cf1rnyc6azkvjilvc3kjynb8nclmbh8n3ccm6b0v2r"; depends=[doParallel foreach]; }; GWSDAT = derive2 { name="GWSDAT"; version="3.1.1"; sha256="0z35ywf33lpbsv0fkdqq5d17nfq1cp0za8pq4lb1ckbkv3w974ls"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; GWmodel = derive2 { name="GWmodel"; version="2.2-8"; sha256="18jd18mysf7li6c7ywd5cjkwzcvpprc93z8ycndyh0jmyzdr062v"; depends=[FNN maptools Rcpp RcppArmadillo robustbase sp spacetime spatialreg spdep]; }; @@ -1961,7 +1969,7 @@ in with self; { Gammareg = derive2 { name="Gammareg"; version="3.0"; sha256="1wh5k3nazycki0h094m4d0nnign8yksgnrrnrm3yka1s7mqzv781"; depends=[]; }; GapAnalysis = derive2 { name="GapAnalysis"; version="1.0.2"; sha256="0ky1njrymh102dy7sna2cm5f5gyx4s7k77bnsdal1yndgw7ppqvx"; depends=[data_table fasterize geosphere raster rmarkdown sf sp tmap]; }; GauPro = derive2 { name="GauPro"; version="0.2.4"; sha256="1fll93r25293xdwv28g9my627f736kawr0ji1vxfc3q275zfy7lg"; depends=[lbfgs R6 Rcpp RcppArmadillo]; }; - GaussSuppression = derive2 { name="GaussSuppression"; version="0.1.0"; sha256="13k6khwvqgxn2i291gi6bwbdjcjl77scz9f8rsmk07cdn6nfakdn"; depends=[Matrix RegSDC SSBtools]; }; + GaussSuppression = derive2 { name="GaussSuppression"; version="0.2.0"; sha256="0jbxiygqkkdy44rj25vl61ilqc0h9n6g63hrjlc050dp5lyhs6zd"; depends=[Matrix RegSDC SSBtools]; }; GaussianHMM1d = derive2 { name="GaussianHMM1d"; version="1.0.1"; sha256="1j1cwh0p7czy2l4qf6nymqcp8kkfaki0j2rj8p99nqn2vgc3vcax"; depends=[doParallel foreach]; }; GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; }; GeNetIt = derive2 { name="GeNetIt"; version="0.1-4"; sha256="1z9h3prlf5r7ks0ys4wy0i5i3giaplqmngsqwxllsy70jjb9s90h"; depends=[exactextractr nlme raster rgeos sf sp spdep]; }; @@ -1982,7 +1990,7 @@ in with self; { GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; GeneNet = derive2 { name="GeneNet"; version="1.2.16"; sha256="1r1khga3nxxjghs4vnbymzp0cwb1q17zw2v3a94qz8fsrirq1sf1"; depends=[corpcor fdrtool longitudinal]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; - GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.1.0"; sha256="02s1wbsdp5ma4pnmcsdl5dwm156zx12d3n1ypzkc33lxg21ashzj"; depends=[CVST kernlab mgcv xgboost]; }; + GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.2.0"; sha256="0xgxmfcpx3mnmp5hxdy5wiihj693qlksv6jxfb9ba4dy2glzdacf"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.2"; sha256="055q0rspjw5yin0kia6gcax89cfdmgvgvj1zjh4iswfs48n9xdcj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; GenericML = derive2 { name="GenericML"; version="0.1.1"; sha256="1jzwvgihl12n4jm37m5b2vz7dvpd7s0f85piaphwdll7bxkpw5pq"; depends=[ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; @@ -2011,7 +2019,7 @@ in with self; { GetLattesData = derive2 { name="GetLattesData"; version="1.4"; sha256="129hnhmw8aw81whyj3g7npwgmg4fmvsji9h2xfg78nrp0abjxijv"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; - GetTDData = derive2 { name="GetTDData"; version="1.4.4"; sha256="0hgnwja6z8x9faj8g2kyvdhj5j8qxpgy39863hhqyil71vxmlcrw"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; + GetTDData = derive2 { name="GetTDData"; version="1.4.5"; sha256="03najzq408sr5vfqnkzc15i0p06w4a25773sr2998h92pihjcqwp"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.1.0"; sha256="1w5agphnbngc0ldb3gbgh4b8ww956lf31bfyxw2zp56crx4akcxf"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; @@ -2020,7 +2028,7 @@ in with self; { GiRaF = derive2 { name="GiRaF"; version="1.0.1"; sha256="1m19jxr6h485v32iqq260cizf30cgrx3pk802r73fbp3ssj7nmvh"; depends=[BH Rcpp RcppArmadillo]; }; GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; }; Gifi = derive2 { name="Gifi"; version="0.3-9"; sha256="0rwyj60cldf3k118cnc5px16dc5p5bfxgl0w2m1lh6rsqlmza25a"; depends=[colorspace]; }; - GillespieSSA = derive2 { name="GillespieSSA"; version="0.6.1"; sha256="0li0jqnbl9rfj8gbspq7fv327fii53rh93ffsxpic7804rmrnbi7"; depends=[]; }; + GillespieSSA = derive2 { name="GillespieSSA"; version="0.6.2"; sha256="1hk7fnv3gdfvx9q4ssw0jgph59l7h2dgl7lv8pivkm678i53n8zl"; depends=[]; }; GillespieSSA2 = derive2 { name="GillespieSSA2"; version="0.2.8"; sha256="03ym8qx5yc1a6j9l973lc0rjzs8hiax8fq13j7m1fcb1pvnbvar5"; depends=[assertthat dplyr dynutils Matrix purrr Rcpp RcppXPtrUtils readr rlang stringr tidyr]; }; Gini = derive2 { name="Gini"; version="0.1.0"; sha256="0858mlh8pwylnnb13y40wscq08gcx1cgwjn88wv5vkim5jn4bigi"; depends=[]; }; GiniDistance = derive2 { name="GiniDistance"; version="0.1.0"; sha256="0jq1dwpsvh3k25lawvzf9ij72jsspzyqsbnrphz8aqwi1dkm3851"; depends=[energy randomForest Rcpp RcppArmadillo readxl]; }; @@ -2064,7 +2072,7 @@ in with self; { GxEScanR = derive2 { name="GxEScanR"; version="2.0.2"; sha256="0k3avad4b2x4sqv8iilx5a8gkybjlipx50mj0la4kl9xv0azshkd"; depends=[prodlim Rcpp RcppArmadillo]; }; GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; H2x2Factorial = derive2 { name="H2x2Factorial"; version="2.0.0"; sha256="01if0ps43xhcw6q5khdbvjd0yvvhkcj4gvdx538g2kaxzi3lrj1z"; depends=[mvtnorm]; }; - HAC = derive2 { name="HAC"; version="1.0-8"; sha256="04pp3xanw8bm5i3fpxg2j6h4qrff81087jmid5grgzs1pgd59p1c"; depends=[copula numDeriv]; }; + HAC = derive2 { name="HAC"; version="1.1-0"; sha256="1k19qrirhzl8qaa4svf7qa90r7gphbbvm9m0977z9gd704n8b62a"; depends=[copula]; }; HACSim = derive2 { name="HACSim"; version="1.0.5"; sha256="0161h3yhi3bh0jq7x105p3rjlrvl46k4iahfz4k84wsvw3akgk1a"; depends=[ape pegas Rcpp RcppArmadillo]; }; HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; @@ -2074,7 +2082,7 @@ in with self; { HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; - HCTDesign = derive2 { name="HCTDesign"; version="0.7.0"; sha256="0qg6c8sndyk5jgihfdcgk4syp7rwcd8zkb5ndx3rfzdmyfcyrl31"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; + HCTDesign = derive2 { name="HCTDesign"; version="0.7.1"; sha256="0gwj4z2qwxqzx8b3hnb4bfg1pm78n9g4j5x8gis1rcfrk68sl7d5"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCV = derive2 { name="HCV"; version="1.2.0"; sha256="00ry36w2v4h3vkf2jq3djcma23xflr7fx7icy2vzwk9ffnmzvpxd"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.2"; sha256="05w742g89r0hr90awwjqlszib2jjfly52l9c7ag3n22vg4d1ixw1"; depends=[ggplot2 mvtnorm survival]; }; @@ -2116,7 +2124,7 @@ in with self; { HLSM = derive2 { name="HLSM"; version="0.9.0"; sha256="1nvjgv8lbqpig9snnxm3k1qs1r7bf43gw7a3prj9l3kmqdd0i4j3"; depends=[abind coda igraph MASS]; }; HMB = derive2 { name="HMB"; version="1.1"; sha256="19z3d0b98fyjcnbxh3g6h2g927nv0408sbxjlzalrjlw9mbpzd2b"; depends=[Rcpp RcppArmadillo]; }; HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.13"; sha256="1n507nsqz1blikci56jhp48rdpq38dnadh8warc2jmvwizl22a3b"; depends=[httr RCurl XML]; }; - HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; }; + HMM = derive2 { name="HMM"; version="1.0.1"; sha256="03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7"; depends=[]; }; HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; }; HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.2"; sha256="0msin7rq3npz221mvrw3zcs6bwz439six99iblx5p3hkp1n1ljf3"; depends=[Rcpp RcppArmadillo Rdpack]; }; HMMcopula = derive2 { name="HMMcopula"; version="1.0.4"; sha256="1gmvav02r3miaq4jx05qjcgzw5qv6w1j77vck5gpps8p38zcp34m"; depends=[copula doParallel foreach matrixcalc mvtnorm]; }; @@ -2146,7 +2154,6 @@ in with self; { HW_pval = derive2 { name="HW.pval"; version="1.0"; sha256="14nmyqw2d9cmn64789yc54fmiqanh6n1dizp7vj94h7b0jwq63yy"; depends=[]; }; HWEBayes = derive2 { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; - HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; }; HaDeX = derive2 { name="HaDeX"; version="1.2.2"; sha256="1qj6n03pd5kd5ff5h4v8wmnqxxylsxx1p6i88nahqkah2mzg9jdr"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; @@ -2183,7 +2190,6 @@ in with self; { Hmisc = derive2 { name="Hmisc"; version="4.6-0"; sha256="1bd1c8sichyijprfpnqj5g72nmgs9jvi0zyw8v4nsg1kn83fj71c"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-11"; sha256="12h9k73bys6ihgs4wgssn9jlgig0kim8i49nqgd3jnd1i3m9b3ii"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; - Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HostSwitch = derive2 { name="HostSwitch"; version="0.1.0"; sha256="0l6vi3l21s8b71fqax53k8g0l92lwnq5dw2gjb2yw30110mzs6wn"; depends=[checkmate ggplot2 plyr purrr shiny tippy]; }; Hotelling = derive2 { name="Hotelling"; version="1.0-8"; sha256="04x2x3anwf4d71dm7x6y08ysk7ygysshc0avisyshbl52x39l8si"; depends=[corpcor]; }; @@ -2242,28 +2248,29 @@ in with self; { ICtest = derive2 { name="ICtest"; version="0.3-4"; sha256="130n25xxq0iav5y2anyhjjkpvfs438qxjgrbil7yzpaaifhxrmi2"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey xts zoo]; }; ICvectorfields = derive2 { name="ICvectorfields"; version="0.1.2"; sha256="0h10ijh00ahk2aawg090sspdyxzln8cwzvrfqyi45p19sbx93503"; depends=[fftwtools Rcpp terra]; }; IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; - IDConverter = derive2 { name="IDConverter"; version="0.2.0"; sha256="1w0j833wxmfc3sy2jwnvz15bvlgy0zss9m9s7md1jkkvhjbxcvnk"; depends=[data_table httr]; }; + IDConverter = derive2 { name="IDConverter"; version="0.3.0"; sha256="1gyyh9xr6x99a0226b8xlp5rclnw5lzvjdskrcr0a482v9k7l0ja"; depends=[data_table httr tibble]; }; IDE = derive2 { name="IDE"; version="0.3.0"; sha256="1m1y7gd8i14kl54qxhjy7bnf2md5vs7bb73k7k92nizv941qn0mn"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; IDF = derive2 { name="IDF"; version="2.1.1"; sha256="045z32zv18hnzddhqk3r7dgql6lavkrjwgsn9lwcjhv1v8j3x6cw"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; - IDSL_IPA = derive2 { name="IDSL.IPA"; version="1.3"; sha256="1lmmr43cblxi0652hi6nk08c8yv3s6m1aqyysmk4xh2mhnr8hqpb"; depends=[BiocManager doSNOW foreach ggplot2 gridExtra mzR png Rcpp readxl]; }; - IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.0"; sha256="09r4s7zkc25cfg0dsli5igv9cpywifgqiysspfs5bah4abv4v7f1"; depends=[base64enc xml2]; }; - IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.0"; sha256="0digl6s13mnknihpg5zy0b2ak9rmwz40ya9bym10bsam86rx3r93"; depends=[BiocManager doParallel doSNOW foreach GA ggplot2 gridExtra IDSL_IPA mzR Rcpp readxl stringi]; }; - IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.0.1"; sha256="11jc1np6b22qr33rilvb557c0aphvb07601a3hw9zmf8s31xs2dg"; depends=[BiocManager doSNOW foreach IDSL_IPA IDSL_UFA mzR Rcpp RcppAlgos readxl stringr]; }; + IDSL_IPA = derive2 { name="IDSL.IPA"; version="1.4"; sha256="029xq64mlwjbk3wwcfsjg2hmf7rsgvn2k67ba026sh536h91dxil"; depends=[base64enc doSNOW foreach ggplot2 gridExtra IDSL_MXP png readxl xml2]; }; + IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.1"; sha256="0gzi42s0nrdp2knf9sh2rkzkdy651czxd1afmfip502jlc5vkxpw"; depends=[base64enc xml2]; }; + IDSL_SUFA = derive2 { name="IDSL.SUFA"; version="1.0"; sha256="1zxjda4fskgk1w8kmmnx2fvk437hd51f45jncdj4wmrlfsi3hj8x"; depends=[]; }; + IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.1"; sha256="0fi538nw0c6lwcsimsi9nyf4hq268hdw8nhfdisfmiacbkpk3iw2"; depends=[base64enc doParallel doSNOW foreach GA ggplot2 gridExtra IDSL_IPA IDSL_MXP readxl xml2]; }; + IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.1"; sha256="0nmqb6za16xlm8my5s2mmpvds3jbch4r054dfsgf2jn4wn2ylds4"; depends=[base64enc doSNOW foreach IDSL_IPA IDSL_MXP IDSL_UFA RcppAlgos readxl xml2]; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; }; IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; }; IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.0.4"; sha256="0lqppf8sd7b82g8qp0ijwl3jn4idxvgz4zhia6kh936sq27qicx6"; depends=[doParallel expm foreach future glmnet HDCI mathjaxr Matrix picasso qlcMatrix rlecuyer]; }; + IFAA = derive2 { name="IFAA"; version="1.0.5"; sha256="1qqmdlvgphf9qfxjznrjh60p83vamvnsl7jd3zbm38yfv00n51yd"; depends=[doParallel expm foreach future glmnet HDCI mathjaxr Matrix qlcMatrix rlecuyer]; }; IFC = derive2 { name="IFC"; version="0.1.2"; sha256="1g5l85mjnf08dxszbybwg5z1k2dwgvhbrls8r37iq45rcb31pmyh"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; - IGoRRR = derive2 { name="IGoRRR"; version="0.3.1"; sha256="0vbg3rm0l1fx9s0waj9ginqgyyr781nmj38m78mhxsvbhccqdjr0"; depends=[clipr dplyr feather fst fuzzyjoin ggformula glue haven Hmisc htmltools jsonlite lubridate magrittr mapsf purrr readODS readxl rhandsontable rio shiny shinydashboard shinyFiles shinyWidgets skimr sortable stringr tables tibble tidyr zoo]; }; + IGoRRR = derive2 { name="IGoRRR"; version="0.3.2"; sha256="1px023pjyjd7z1742xx1w37dhkyprhbkha93snm6s25cmg0jhfrn"; depends=[clipr dplyr feather fst fuzzyjoin ggformula glue haven Hmisc htmltools jsonlite lubridate magrittr mapsf purrr readODS readxl rhandsontable rio shiny shinydashboard shinyFiles shinyWidgets skimr sortable stringr tables tibble tidyr zoo]; }; IHSEP = derive2 { name="IHSEP"; version="0.2"; sha256="1qb6mn9bsd69pifmphywmj6j71v14wklydw23pbj5980c5hrlwsj"; depends=[lpint Rcpp]; }; IIVpredictor = derive2 { name="IIVpredictor"; version="0.1.0"; sha256="15361j8b60jj3bh8cjxs39d9bir1aywy9bd254s5w94cakhy0ld5"; depends=[lavaan R2jags]; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; @@ -2299,7 +2306,7 @@ in with self; { IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRCcheck = derive2 { name="IRCcheck"; version="1.0.0"; sha256="035sx36qf5hdnc51h8251qwxfm30r8h2v2qs2x161ip4cqghw019"; depends=[corpcor GGMncv glmnet MASS Rdpack]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.4"; sha256="0pnqmzzzbyqdg5hy4jjmlw38cpi81gsphfs4bqwbhmx77dp7ib06"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.3"; sha256="0krq0xxxwl59cp8mn82f9xlincvl6l8r6cq5axfmk99nrzcfdy5g"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.4"; sha256="0flx6r6lnrd1gms5yyyv3xdg7zzz6kkbi1wrnlg6pyzpwc63xs1p"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IRTBEMM = derive2 { name="IRTBEMM"; version="1.0.7"; sha256="09siwm2shjb8hhk64r66fspzykzr2r0m011pv8qcl9k7g040mxpi"; depends=[]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRdisplay = derive2 { name="IRdisplay"; version="1.1"; sha256="0awdiv4rr93y8jb1d64sm1iy37ywyniqm7w98yv6qm0zz47h7sw3"; depends=[repr]; }; @@ -2314,13 +2321,12 @@ in with self; { ISOcodes = derive2 { name="ISOcodes"; version="2022.01.10"; sha256="0gy7n5bgxnl4rawry0pg078bkks9lzsbsrwjq8q5cvxl4k3dwpdj"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; - ISR = derive2 { name="ISR"; version="2021.9.24"; sha256="0y1hggkb3d2nvnadr9qg83lsrzzwdnzywpqjkjf460lrmazki5dq"; depends=[MASS]; }; + ISR = derive2 { name="ISR"; version="2022.3.28"; sha256="1zmibljal0jq0hvdpgkbpnq5f72jlxhgmzv575m2hqmw7f3mibs2"; depends=[MASS]; }; ISRaD = derive2 { name="ISRaD"; version="1.7.8"; sha256="119vvxviimnvy6x63hijsgmj8w02ni1g30imv8v39rp17hklr6pc"; depends=[dplyr ggplot2 httr maps raster RCurl readxl tidyr writexl]; }; ISwR = derive2 { name="ISwR"; version="2.0-8"; sha256="1bay7na68awq68bw82dwhcfxp2d3di2dg33islq0mgrhd4sfdfza"; depends=[]; }; ITNr = derive2 { name="ITNr"; version="0.6.0"; sha256="0yxn3768819ph49bizprj3arrvz9rzhb45rkcpfivwfwlyf010yy"; depends=[blockmodeling circlize cowplot dplyr fastmatch GGally ggplot2 igraph intergraph maps network networkDynamic plyr RColorBrewer reshape2 sna tnet WDI]; }; ITRLearn = derive2 { name="ITRLearn"; version="1.0-1"; sha256="03xdbpn3qddcq9krdpnywd3xbzfh2viym2qqx6rcqs7w7bdhhlk6"; depends=[Formula kernlab]; }; ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; - IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; IceSat2R = derive2 { name="IceSat2R"; version="1.0.1"; sha256="0xmx6schcg03p1c7v86m8r7yh78gc5dgiqa1v1d3s030r787ds6a"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; @@ -2333,8 +2339,8 @@ in with self; { ImputeRobust = derive2 { name="ImputeRobust"; version="1.3-1"; sha256="1zvwlpffpm4gqysz57clf8jkqr72yjbzx90pdy95la51m0b6cdbd"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InDisc = derive2 { name="InDisc"; version="1.1.0"; sha256="0halx4m503b9d4vk5y0qmx6qyvc6lwjr4ys4xdcj6bnzv8wi8ymw"; depends=[matrixStats psych]; }; InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; - InSilicoVA = derive2 { name="InSilicoVA"; version="1.3.4"; sha256="1hdvqa4inl5l6rzy2d9z5xvrnsj1jn75pdw77kr7cbnhjvjpi79f"; depends=[coda ggplot2 InterVA5 rJava]; }; - IncDTW = derive2 { name="IncDTW"; version="1.1.4.3"; sha256="1zqdb0fqy5bidydgfdrvf8hsza2lzd3db0pf7i1x654gk3g0fwf2"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; + InSilicoVA = derive2 { name="InSilicoVA"; version="1.3.5"; sha256="15b8hbiahl92w9xdmfgd62j86japp229026b03m7g0pb7kvgv517"; depends=[coda ggplot2 InterVA5 rJava]; }; + IncDTW = derive2 { name="IncDTW"; version="1.1.4.4"; sha256="0q8ssv86gbp3v6gznzm5vkc8qhny6ycbh85jg5z4izldpx8a4fq6"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; }; IncomPair = derive2 { name="IncomPair"; version="0.1.0"; sha256="156mc4csbxz976md7ikjd6sqamzsfc8ik9xf1qbhrfl8y7957kbb"; depends=[]; }; IndTestPP = derive2 { name="IndTestPP"; version="3.0"; sha256="1z48pr8znbk1gdvjfdvszxlzhj7v88p3y7zhi1f0xw75dkfpnwwy"; depends=[]; }; IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; }; @@ -2347,7 +2353,7 @@ in with self; { InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; Inflect = derive2 { name="Inflect"; version="1.1.0"; sha256="09904nn33libjv29n74n5nq1hj6ka8a4h3jllwpbxk9hsmnlmf9h"; depends=[data_table ggplot2 optimr plotrix readxl tidyr UpSetR writexl]; }; - InflectSSP = derive2 { name="InflectSSP"; version="1.4.3"; sha256="1am53sr0yrycwvim2a1qhpyla14cfa6fi8yvgvlgrgx8351v8i1v"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; + InflectSSP = derive2 { name="InflectSSP"; version="1.4.4"; sha256="1k12gn6sb76xdaz796b080x1gmyjkz64za5psxnhfbiknrijz45k"; depends=[data_table GGally ggplot2 httr jsonlite network plotrix RColorBrewer readxl svglite tidyr xlsx]; }; InfoTrad = derive2 { name="InfoTrad"; version="1.2"; sha256="0blfn59w73hjga15sw8plwvn6yq9fj95nxwp018mp1harl8wa5db"; depends=[nloptr]; }; Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; @@ -2395,9 +2401,11 @@ in with self; { JBrowseR = derive2 { name="JBrowseR"; version="0.9.0"; sha256="0wwcz5dzjmss2rdqdfxrxbaj01f9avh7h5clzl9aqvql2g0gllbl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; JCRImpactFactor = derive2 { name="JCRImpactFactor"; version="1.0.0"; sha256="1i7853i8k03nq7ax9rypm9qcl5qgyddblgbfjp3yxi1s3a6bkwk1"; depends=[stringr]; }; JFE = derive2 { name="JFE"; version="2.5.2"; sha256="15y8l2cdw8g4abwiv1ddxb42kcpajp0azzpbqcj4h95ibr4j61i2"; depends=[caret fPortfolio magrittr tcltk2 xts zoo]; }; + JFM = derive2 { name="JFM"; version="1.0"; sha256="08655vgfb2ll8hwjsj5lsw4849rahn3blisdqn8bwfhclrwd24xn"; depends=[MASS randomcoloR Rcpp RcppArmadillo rgl RockFab Rvcg]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; JGR = derive2 { name="JGR"; version="1.9-1"; sha256="0zh9v16ymq68xv1canfh0hafizb722632pv7r5xb1fsc230hbcc7"; depends=[JavaGD rJava]; }; + JLPM = derive2 { name="JLPM"; version="1.0.1"; sha256="0k63vi44vfb0k9nkqyhh3iymrca7p47xf2h4x2c4fi50v6bs3v2l"; depends=[marqLevAlg randtoolbox stringr survival]; }; JM = derive2 { name="JM"; version="1.5-1"; sha256="1nx4dcd3p8f30kryp09iylnnlrvhx0dbx4f51ag7ij5m4ml80zxc"; depends=[MASS nlme survival]; }; JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; @@ -2426,7 +2434,7 @@ in with self; { JointAI = derive2 { name="JointAI"; version="1.0.3"; sha256="1dg685lpqxs1a2mf584a0l0a6zz6bkp06n3ydvgnvngrclhv18zj"; depends=[coda foreach future MASS mathjaxr mcmcse rjags rlang survival]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointNets = derive2 { name="JointNets"; version="2.0.1"; sha256="18n9dsy0w0nh7dznp6gw6g5fhhjhf5y589nb49hri0721kq1h3rb"; depends=[brainR igraph JGL lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; - Julia = derive2 { name="Julia"; version="1.3.1"; sha256="0wkpz6i29mg3hls4gk09ik6s3dxmn4g8lrgflcjwgkglnwzl9r9v"; depends=[]; }; + Julia = derive2 { name="Julia"; version="1.3.3"; sha256="0x38wzxh1ca5szh2ffhwp9vfpbnjxkazf3a53qdsa2n0gl921r5z"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.4"; sha256="0ys2sm8yf41zqkvwz9cavkqk8br338w93wq0h8lggfq4q0l85n21"; depends=[knitr Rcpp]; }; JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.1"; sha256="0chbax02l1p3qr0skvnxw1b8g7kf6s7sk2f3gj0ddl5kj6ls1p5n"; depends=[]; }; JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; @@ -2448,6 +2456,7 @@ in with self; { KMunicate = derive2 { name="KMunicate"; version="0.2.1"; sha256="19bsnixy59jqpj414827l2r65jimf0swxg36bi90s3pr4mvf7snq"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; KOBT = derive2 { name="KOBT"; version="0.1.0"; sha256="0dw6s68x95d4z5a6p8bs1368jcxv5jx0wd87js28i2qm3q57ss71"; depends=[glmnet knockoff MASS Rdpack spcov xgboost]; }; + KODAMA = derive2 { name="KODAMA"; version="1.9"; sha256="1kqfj9r9qvwvgxr8d7p56fk83r5a72jhiirqff7n4bwxmvzbpy74"; depends=[minerva Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; KONPsurv = derive2 { name="KONPsurv"; version="1.0.4"; sha256="08z24w04rzydm86z201crcmyw88sg92yqma5hzj0blj0fyqakwmi"; depends=[Rcpp survival]; }; KPC = derive2 { name="KPC"; version="0.1.1"; sha256="09zhmjv7dskkdkhrk5alxpxiwlgl9n2whfhxf237q5zfyxxa8pm9"; depends=[data_table kernlab mlpack proxy RANN]; }; @@ -2458,14 +2467,14 @@ in with self; { KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; }; KSPM = derive2 { name="KSPM"; version="0.2.1"; sha256="13fq0d016z6880rr93y918l27fsxd5dxc6gbdnkma5sgsjni5cxh"; depends=[CompQuadForm DEoptim expm]; }; KScorrect = derive2 { name="KScorrect"; version="1.4.0"; sha256="1khvwc610yp3fd4fn0wcgqpzxg9g7sicjjmwvfcahs8qxn3m5vfa"; depends=[doParallel foreach iterators MASS mclust]; }; - KSgeneral = derive2 { name="KSgeneral"; version="1.1.0"; sha256="0xfzpgr24801y64y7q3xv5a1ry36ijx0rjwx926zg2hxxgjl00xz"; depends=[dgof MASS Rcpp]; }; + KSgeneral = derive2 { name="KSgeneral"; version="1.1.1"; sha256="0fxkykvkfdh492pzs7fs8x8qnkrr0v5hmvykr8x94lqhnmsr4axn"; depends=[dgof MASS Rcpp]; }; KTensorGraphs = derive2 { name="KTensorGraphs"; version="1.1"; sha256="1szl66ix6c6vb0zzyp404psglx3lk125903zc4za0qfzcic7a9p6"; depends=[]; }; KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; }; KappaV = derive2 { name="KappaV"; version="0.3"; sha256="13mmfb8ijpgvzfj20andqb662950lp9g25k5b26r5ba65p7nhva7"; depends=[maptools PresenceAbsence rgeos sp]; }; KarsTS = derive2 { name="KarsTS"; version="2.4.1"; sha256="1km8321a8vzff26g3x2hvdv5ciyk3fdpcn7g1xqbsx96fzxyd22n"; depends=[circular forecast infotheo mgcv missForest MVN nonlinearTseries plot3D rgl stinepack stlplus tcltk2 tseries tseriesChaos zoo]; }; KbMvtSkew = derive2 { name="KbMvtSkew"; version="1.0.2"; sha256="14g27a0dkj4gpf5l2k96fd3aa21fz8b85lf5a1jxj0qgjmr4kib0"; depends=[]; }; KenSyn = derive2 { name="KenSyn"; version="0.3"; sha256="0s8sq3caxn4swac81196dp52r9lbmxb3ni45yaxh53f5g34slsi8"; depends=[lme4 metafor nlme]; }; - Kendall = derive2 { name="Kendall"; version="2.2"; sha256="0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn"; depends=[boot]; }; + Kendall = derive2 { name="Kendall"; version="2.2.1"; sha256="1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m"; depends=[boot]; }; KernSmooth = derive2 { name="KernSmooth"; version="2.23-20"; sha256="0fgclmzk3ksjsh3j47jqzm3jhqrwn12rkp7f84yr6wr43q2pbsr0"; depends=[]; }; KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.4"; sha256="0qqlmcd04m89pmhrbmxxx4lzzb6sksgrm0j8x7fs5r0sxdqy6rcp"; depends=[plotrix Rcpp rgl]; }; KernelKnn = derive2 { name="KernelKnn"; version="1.1.4"; sha256="07sjf3ambfih34gm2gkall4h60jy9am8dvakr71wk0lsabih3wqx"; depends=[Rcpp RcppArmadillo]; }; @@ -2477,6 +2486,7 @@ in with self; { KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; KnockoffTrio = derive2 { name="KnockoffTrio"; version="1.0.0"; sha256="1lsaslv4p5f4488rqf8fqydpdykdqifsdf2aa9dg1mx8d1agzcb5"; depends=[]; }; KnowBR = derive2 { name="KnowBR"; version="2.1"; sha256="0r4df95axsrsr72ksy3sdc37sjjd6fvcpj5si7jag7q7ffs8kzmw"; depends=[fossil mgcv plotrix sp vegan]; }; + KoboconnectR = derive2 { name="KoboconnectR"; version="1.0.0"; sha256="06z9sijgdaarwmq1dxi0jnrnz3r6b7bi80ly3ac2lqwlr59ha35a"; depends=[curl dplyr httr jsonlite mime openssl R6]; }; KoulMde = derive2 { name="KoulMde"; version="3.2.1"; sha256="0yx04my2vwjpi4l35h1i5xwqckca8b72divww39y1frcvia33g08"; depends=[expm Rcpp RcppArmadillo]; }; Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; }; KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.2.1"; sha256="0yzilmiiyzd2x3v0cnjphf0wdwiblh37kgrvmfrdy49qly48pvi2"; depends=[dplyr ggplot2 magrittr tibble]; }; @@ -2494,6 +2504,7 @@ in with self; { LARGB = derive2 { name="LARGB"; version="0.1.0"; sha256="0ksyagp4wy1rm7kll6rgdx2735k6ywlaf08d6yys9cv090rpc8l3"; depends=[dplyr imager]; }; LARisk = derive2 { name="LARisk"; version="1.0.0"; sha256="13d008v8aypqlx35bf16y7rcfcv5qnbsi8q0zpfcl03rzxmqpb8b"; depends=[dplyr Rcpp]; }; LAWBL = derive2 { name="LAWBL"; version="1.4.0"; sha256="13drqwyg6avmsn3s2d521x1cvlqg85qv999lwnvnyszvz8grahcr"; depends=[coda MASS]; }; + LBPG = derive2 { name="LBPG"; version="0.1.2"; sha256="01sky2388ylx960vd5lnj48an2n82fd909cnm11v91kklyvkxxlc"; depends=[gsl]; }; LBSPR = derive2 { name="LBSPR"; version="0.1.6"; sha256="075wcjhvp90fj37ihrplnrc0vy8wpav5qivkw1rgv00fa8xj7pw0"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; }; LCA = derive2 { name="LCA"; version="0.1.1"; sha256="014kih33y8b9nls0pcigw68jbz7vgnq8w1xbwm2d37g1m5y6xlyw"; depends=[]; }; LCAextend = derive2 { name="LCAextend"; version="1.3"; sha256="1l75y3vkbsmsm3pjd5pwy0hlv6gz5ryxs4pkx9aiyhxz2y9wnhpb"; depends=[boot kinship2 mvtnorm rms]; }; @@ -2524,7 +2535,7 @@ in with self; { LGEWIS = derive2 { name="LGEWIS"; version="1.1"; sha256="1i52vp0ghjzmyh4r8h6jpyij7x4skw99xvw017b56m8fg64zy70r"; depends=[CompQuadForm geeM mvtnorm SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; LHD = derive2 { name="LHD"; version="1.3.3"; sha256="0wqjf0wl0l3kq7i030qjzdavsn75jmghjvzk76b9d22fhk356yh8"; depends=[numbers]; }; - LIC = derive2 { name="LIC"; version="0.0.1"; sha256="1fmd3sjzzkcpbin9ak72yvv4ibrrwhzqxymmpsppqfv1syk6h6s4"; depends=[]; }; + LIC = derive2 { name="LIC"; version="0.0.2"; sha256="01wqx3mqq0rz4m0zp07ln6d396fz7xcwm37kn8js26ravyhiipdq"; depends=[]; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LIHKGr = derive2 { name="LIHKGr"; version="0.1.0"; sha256="16yyalsdbaxncgfabsz2q2fixzmwyd62gvnvnxazf4vlypp6xlqz"; depends=[dplyr magrittr purrr R6 raster RSelenium rvest tibble xml2]; }; LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; @@ -2535,16 +2546,17 @@ in with self; { LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.1.0"; sha256="1wrda19629k7fg3rryk9sf16h1w5915cifv7iiqqg64k8w1vwnaj"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen rstan rstantools StanHeaders]; }; - LMMsolver = derive2 { name="LMMsolver"; version="1.0.0"; sha256="0ri89i5q3026ambm1zk24adi0jf22wb9assklwsqzz2kmh54k282"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; - LMMstar = derive2 { name="LMMstar"; version="0.5.2"; sha256="0s5j6lwyh8wswkkgi3d2j0cb3md5x2xk086hr3hjhimbazcr46xr"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.1"; sha256="0lak467fhb34xc7k8hfg48zjicf4dgyrgkm59gwph22fdixs6v6f"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; + LMMstar = derive2 { name="LMMstar"; version="0.5.4"; sha256="1n92qfg3hixdik95gylbbckc66hajqwsc15k221vrvxwdl56a16q"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; LMN = derive2 { name="LMN"; version="1.1.2"; sha256="17xsf61dnpvbhxwbgqjj9k26xwd9s90vfzv2ymj1i2g5zdd6w9k7"; depends=[Rcpp RcppEigen SuperGauss]; }; - LMest = derive2 { name="LMest"; version="3.0.2"; sha256="0x80cgd54qw1l4wayxwyyccmajn5i227727wlsgm6s4chnpvispz"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; + LMest = derive2 { name="LMest"; version="3.0.3"; sha256="1kw59acjq1cax52dq8dqb5nzysil5l3s26i1h89q0smrkirscssx"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3"; sha256="0c27154jghfl83n3sn26pr8mjcybrq02glvnjcx8hllrmz4gmnmi"; depends=[MASS]; }; LMoFit = derive2 { name="LMoFit"; version="0.1.6"; sha256="10xiaa5h8c0sq9z70yjs29z8jnjyqgybdv33d6s2100h3n46jd31"; depends=[ggplot2 lmom pracma sf]; }; LNIRT = derive2 { name="LNIRT"; version="0.5.1"; sha256="0w32qvz5mhzg6f8050p57v26amn6d2il2icjfiypf7yi3gsx7w09"; depends=[MASS]; }; LOGAN = derive2 { name="LOGAN"; version="1.0.0"; sha256="00y8kcykw01gv2g20vmpwkc3qqyafwbiw5pa731xlfnh1b8sn0hi"; depends=[dplyr foreign ggplot2 magrittr modules pander psych rlang stringr]; }; + LOGANTree = derive2 { name="LOGANTree"; version="0.1.0"; sha256="14faq31by8csmik1jbi1bswvifnv5agipiyzz556j7f3w9cwc0ri"; depends=[caret caretEnsemble dplyr gbm ggplot2 ROCR rpart_plot tibble]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; - LOMAR = derive2 { name="LOMAR"; version="0.2.0"; sha256="1wfkair4zzd58s36mc9gyk7d24cp6y2lrg7qsg0acx3b00wzdjwq"; depends=[aws BH data_table dbscan doParallel EBImage ff FNN foreach pracma proxy RANN Rcpp reshape2 transport]; }; + LOMAR = derive2 { name="LOMAR"; version="0.2.1"; sha256="0i361yz5h1g9bb5xqq9fq2bb3ylwkshnmqrlhijz9fr9ypm2ywh5"; depends=[aws BH data_table dbscan doParallel EBImage ff FNN foreach pracma proxy RANN Rcpp reshape2 transport]; }; LOPART = derive2 { name="LOPART"; version="2020.6.29"; sha256="1zxaag5pj3l9rzxhlrkx8q4adlap7wsdysb4y6ijvsmxvv63j22k"; depends=[data_table Rcpp]; }; LOST = derive2 { name="LOST"; version="2.0.2"; sha256="15ggmvjy2k4j692y9h3anfzmb0hgnx66cbr76grwvcfysdx87ick"; depends=[e1071 gdata geomorph MASS miscTools pcaMethods rgl shapes]; }; LPBkg = derive2 { name="LPBkg"; version="1.2"; sha256="1pgv6cb7m2j7qnrzybnv6x67a3ry8kpvisqj86rvxzclc9q56fdn"; depends=[Hmisc orthopolynom polynom]; }; @@ -2552,7 +2564,7 @@ in with self; { LPDynR = derive2 { name="LPDynR"; version="1.0.2"; sha256="0vlrx4dbv62b89xbmsp24iyn4wiq3695szbli18baf2qj2nbmnym"; depends=[data_table dplyr magrittr raster rgdal virtualspecies]; }; LPGraph = derive2 { name="LPGraph"; version="2.1"; sha256="1d2kslravi3v9kf6sdabwfpa9s9xxqj3s3d7f7qfcrpfydqixq1q"; depends=[car PMA]; }; LPKsample = derive2 { name="LPKsample"; version="2.1"; sha256="0ifhx8w9f6sacmnck2g7i7r742i8bwwzf0rgajw3klw2wni9ikqx"; depends=[apcluster igraph LPGraph mclust]; }; - LPM = derive2 { name="LPM"; version="2.8"; sha256="0a4cf7chjyfwp1s8dfyfgbm2k6nybfmfh4bhz8b8pfj1an68bdr6"; depends=[fracdiff MASS powdist]; }; + LPM = derive2 { name="LPM"; version="2.9"; sha256="0gmymzq6khcnhzv1qnysrd1rdacynys1v95rq7970w6ai87z9w80"; depends=[fracdiff MASS powdist]; }; LPRelevance = derive2 { name="LPRelevance"; version="3.2"; sha256="1bbsva41r8wj0hxar334zvwng0zrs0djq6jn74b345ncwz7ssa3h"; depends=[BayesGOF Bolstad2 caret ggplot2 glmnet leaps locfdr MASS polynom reshape2]; }; LPS = derive2 { name="LPS"; version="1.0.16"; sha256="192iz2gakrddqc4h1y4swj3m3dl03x9mvj3i1dl7jnj18dxik24n"; depends=[]; }; LPStimeSeries = derive2 { name="LPStimeSeries"; version="1.0-5"; sha256="0jmcy8076w4bzfnxaq2m3s60c1wdmywkwzfyrc19wdm8idf666wh"; depends=[RColorBrewer]; }; @@ -2587,7 +2599,7 @@ in with self; { LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.5.5"; sha256="0f0am4wydk4wqiwjzxj2ibdkp5sd47qam4218nn0489knkvas3s7"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="2.1.4"; sha256="1df3k5jl57l07f13k854izmxf1vnml54lx1d3zrz3gqvhhzrpl40"; depends=[boot glasso glmnet jsonlite mclust networkD3 nnet]; }; + LUCIDus = derive2 { name="LUCIDus"; version="2.1.5-1"; sha256="09855qvr8mhc7g8crpjx7pxrkqfqrzd6dy9d0ccffazz6qgbbjfz"; depends=[boot glasso glmnet jsonlite mclust networkD3 nnet progress]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.4.5"; sha256="1mqxay678baxqkmbcknn5bq3bw6fk9nr04ljsbh13wqxz27iw5bj"; depends=[data_table doFuture foreach future iterators progressr vegperiod]; }; @@ -2595,7 +2607,7 @@ in with self; { LaF = derive2 { name="LaF"; version="0.8.4"; sha256="1mj010bl4ql0hm33vl0dd08s9dab11y9fa32nsqs6kbb22gjzk6p"; depends=[Rcpp]; }; LabApplStat = derive2 { name="LabApplStat"; version="1.4.3"; sha256="12brjwd0hazc3s69wjybmfvapslcx87npa647hlrcfjxzg46x9ar"; depends=[emmeans ggplot2 ggraph]; }; LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; - LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2.5"; sha256="1fhr677mp7dp18q9yvqycsmyqvqh007y3pc8r500n2axiczjzkqg"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3"; sha256="1879w9xssymk6shnlb3alkfkw4697nfwx9b0gw7y3qrvvvjwh05j"; depends=[data_table maptools rgdal rgeos sp spdep]; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; Lahman = derive2 { name="Lahman"; version="9.0-0"; sha256="0q6whyqlxdkm17i6hichnd89y3pnjc0xc5aabdanf1i4lpv5vynr"; depends=[dplyr]; }; @@ -2621,7 +2633,7 @@ in with self; { LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; LearnClust = derive2 { name="LearnClust"; version="1.1"; sha256="0r2ns1bnsygc6jhr83v1ylfp8fkn3j76233zk5cwsxrq0grx5iqs"; depends=[magick]; }; LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; - LearnPCA = derive2 { name="LearnPCA"; version="0.1.1"; sha256="0crsgpzha1pqg0iqwqp4bqsbl6cg3x8qqkg1qkdyzkl19f3mdgnq"; depends=[]; }; + LearnPCA = derive2 { name="LearnPCA"; version="0.1.4"; sha256="17pr3m5ifcb4snza64d0ri3h94ybwn85clx4rvqb0y9735jmgw7w"; depends=[]; }; LearningRlab = derive2 { name="LearningRlab"; version="2.2"; sha256="15lkcrdfdrip1s4rpsn6kshjzsg1hfryh6lgbiqw9x2h0xvfj4da"; depends=[crayon magick]; }; LearningStats = derive2 { name="LearningStats"; version="0.1.0"; sha256="0xrrb6jws4zj2nwnn30g338bib49b7j26v52ym7p2variwllz068"; depends=[data_table haven readODS readxl]; }; LexFindR = derive2 { name="LexFindR"; version="1.0.2"; sha256="16ikw3s034zqgfcp2hiyhv1nq5kp65wpq1d8fclrlqiabilyk7x4"; depends=[]; }; @@ -2650,7 +2662,9 @@ in with self; { Lmoments = derive2 { name="Lmoments"; version="1.3-1"; sha256="0pc63bj9a8hzr5m3yssrc4kin39fffwkl8rggs3sagzr12d4i7bw"; depends=[Rcpp RcppArmadillo]; }; LncFinder = derive2 { name="LncFinder"; version="1.1.5"; sha256="0mb41fjph4svn2amdx6fb2j8pzgll17c0xxwnsan9vjipnmj59hi"; depends=[caret e1071 seqinr]; }; LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; + LoBrA = derive2 { name="LoBrA"; version="1.0"; sha256="0rsxkli6xhjwy058skgij2cf3n1lcjsaw3pd51i55l2bpwlrmci6"; depends=[lawstat nlme qpdf RColorBrewer]; }; LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; + LocKer = derive2 { name="LocKer"; version="1.1"; sha256="034r6215aigb5hdm2a7cs8qw3nikjdjqnqpn1g27p3lxwfp0n3pr"; depends=[fda Matrix psych]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.2.2"; sha256="1lqcjy5fzz1ndqih5nikidy2zfkn2dn7smbyvdjy47pgcjbzm96a"; depends=[cluster gss lattice Rcpp]; }; LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.3"; sha256="05vggk5d0w3f9w5217c9hzy5jhwv24p2g8pcj0l6zxkhic01nbrl"; depends=[cluster lattice]; }; Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; @@ -2672,7 +2686,7 @@ in with self; { LowRankQP = derive2 { name="LowRankQP"; version="1.0.4"; sha256="0cg8f42s15vphnifw6gnrhxaj6j5hmgbq8xki5mkwjsizd0ch5na"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; - Luminescence = derive2 { name="Luminescence"; version="0.9.18"; sha256="1jv6pdc1i8vwnbq17qvyj0rvjlyr5xdgbgx5z4cib32z2v1xygw6"; depends=[bbmle data_table DEoptim httr lamW matrixStats mclust minpack_lm plotrix Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.9.19"; sha256="1hs2sdlvnvy20k03alagq505jgd3756azcdjhgswjbk4bhy4rd8r"; depends=[bbmle data_table DEoptim httr lamW matrixStats mclust minpack_lm plotrix Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="2.0"; sha256="160qjrb3mxybvr4z6zra6rzf6scyrb9mplw36gqlfxj418ndnmm1"; depends=[dplyr MASS]; }; M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; @@ -2680,14 +2694,14 @@ in with self; { MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; MACER = derive2 { name="MACER"; version="0.1.1"; sha256="006f15s75hnyacc31ni4gf1r4j32hlv5bqmnnl9fkcgf9jxs9hw4"; depends=[ape httr rentrez]; }; MADPop = derive2 { name="MADPop"; version="1.1.2"; sha256="0hwnkjrc3w9x3gha0y70fidfc587b6gfdhzwzdzrfvxrhsdy05yd"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAFDash = derive2 { name="MAFDash"; version="0.2.0"; sha256="0hb5dqjncb5if15l9215v0p5rkywg7vld1gdbjhgj8xjqjg9mhki"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; }; - MAGEE = derive2 { name="MAGEE"; version="1.0.2"; sha256="1kmh7hdgk7p5blh9kfid7h3iaa5cjl1m0kfky8fjfnnjsid2f4b7"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; + MAFDash = derive2 { name="MAFDash"; version="0.2.1"; sha256="11d503sw423ddawj8lapxpm59532nxz4b6wh06fn4kqzh0gq1mbj"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; }; + MAGEE = derive2 { name="MAGEE"; version="1.1.0"; sha256="18kibsankq9b00vkcc7480g1iahgys9n4lyiykxzqq41s8lm58jc"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.6.2"; sha256="0c2llzjhrv1jn5zna654bjgyq5q0hqwzfv9kda9mfjf20pfc34my"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.0"; sha256="0x0b7jpx3hiipmy7jgh8dnz1rnbh512g81fv62049c8v6wg47pd7"; depends=[AUC grplasso]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.21"; sha256="1y1g3819ss06dry70kfhg2syddw71682qmzkcyppfsma6hhghw87"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.13"; sha256="0xxdvfg9h6vl2g2wlxfmrskn8576rd958mn5jblryyqg9xbanlhr"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; - MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0"; sha256="0463wm7y4xj15f8601ng744gzsn3bj4iczv8bsjyx0asbsxha9fx"; depends=[lattice MALDIquant robustbase signal waveslim]; }; + MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0-1"; sha256="1gm5w614r66av6bvfiad5964hsr6hb0c03c90ck9lb251bns98wm"; depends=[lattice MALDIquant robustbase signal waveslim]; }; MAMS = derive2 { name="MAMS"; version="2.0.0"; sha256="05pnrxziwsgnhy05fac8smxcm65zxi2dl7lar2jakiamd2hxv3c2"; depends=[future future_apply mvtnorm]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.5.3"; sha256="0gdyd7avdc7jh1hp03wlbqi5krijxrgargkivq97qyk83zf387dx"; depends=[data_table ellipse magic MASS Matrix multcomp plotrix plyr]; }; @@ -2697,8 +2711,7 @@ in with self; { MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; - MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; }; - MASS = derive2 { name="MASS"; version="7.3-55"; sha256="191i1iylvh2w2hi99fnm06731lma7z5snpjknfff1m9ziyy9qab5"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-56"; sha256="11gv5965ba6xr4qsp1945vd39rp0sggzpa103rwj1c5hw0abvnlv"; depends=[]; }; MASSExtra = derive2 { name="MASSExtra"; version="1.1.2"; sha256="0jzzm3ahn1iisdp632hcn8lnk6hhh699jqfj6v0164qxd6487xvs"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; @@ -2726,7 +2739,6 @@ in with self; { MCAvariants = derive2 { name="MCAvariants"; version="2.6"; sha256="19wnkk7bknj5yd0s63ssybyzbs7x022wyr444hlinw8b181x57f3"; depends=[ggplot2 ggrepel gridExtra plotly]; }; MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; MCDA = derive2 { name="MCDA"; version="0.0.21"; sha256="1y37whbmzzghdav10l4w72sv6dzdxfhij7vkq5217ajkn2cm06mg"; depends=[combinat glpkAPI RColorBrewer Rglpk]; }; - MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; }; MCI = derive2 { name="MCI"; version="1.3.3"; sha256="1wn8lcr5sq3697nsmly6syb9jv7p99ks0fy933ff5rx54x3rf9hz"; depends=[]; }; MCID = derive2 { name="MCID"; version="0.1.0"; sha256="034r4qxbqnl9hhkpv9r79p26lzj5qh0379ya43ynyvbbi8b8z3rl"; depends=[]; }; MCL = derive2 { name="MCL"; version="1.0"; sha256="1w36h4vhd525h57pz6ik3abbsrvxnkcqypl2aj1ijb6wm7nfp4ri"; depends=[expm]; }; @@ -2735,8 +2747,7 @@ in with self; { MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.4"; sha256="0v0d43wnq3swbrcsbg9qmwkmk4s50grd6cik4ng5baj2i6i4hd2n"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.33"; sha256="1z6l2lbirjrdvvkd6yp55p6gjlc0bcz79k2yl2i5zvgqk7kp4vdm"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.6-1"; sha256="1skanp6czfk83s13dnjrb699m9z6a0r59q0f79fv0k560jc8vbrj"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.6-2"; sha256="18nyncvgb75q8flndni99ldr7ynqhillphkj7ydsmfv5w8b0zvqp"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; MCMCvis = derive2 { name="MCMCvis"; version="0.15.5"; sha256="1sh8znwk2s6gx7q6h1ps5yid24ywj2fpng0c7nckrfkywb5h5j14"; depends=[coda colorspace overlapping rstan]; }; @@ -2763,7 +2774,7 @@ in with self; { MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; }; MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; }; MEDITS = derive2 { name="MEDITS"; version="0.1.7"; sha256="0n3llnvpxd4bs1vslhmsahvl9vm0pmbmc94gijss16linpskxxkj"; depends=[ggplot2 hms raster rgdal rgeos sp tibble vegan]; }; - MEDseq = derive2 { name="MEDseq"; version="1.3.2"; sha256="1632j7mi6r6vlqwq57dzalcz89jj7095ls01zc9d34zyfjl3r055"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; + MEDseq = derive2 { name="MEDseq"; version="1.3.3"; sha256="0nz7v95b3fpaacw240bwbm00vp0gvxz0dqi9la504da1rvh9rm71"; depends=[cluster matrixStats nnet seriation stringdist TraMineR WeightedCluster]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-3"; sha256="0fq85jrajfwavq2fvsw2x9hknc57wc253zw2vw970f04khfbragd"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; @@ -2789,6 +2800,7 @@ in with self; { MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive2 { name="MGSDA"; version="1.6"; sha256="03n7ngfbh87hhgpkjkc1a0zjslr0k9zip1prvbwhyqkfq21zajbr"; depends=[MASS]; }; MHCtools = derive2 { name="MHCtools"; version="1.4.1"; sha256="1dkinfhiyc4gwpasw7nfvgaf7gby8x33fi5dfj976dcgsaqglj9a"; depends=[mgcv]; }; + MHDA = derive2 { name="MHDA"; version="1.0"; sha256="1ghhv6ipwap26f0cjgw94ydrrzm6v71mhjpvgl66vsp0hg349zz5"; depends=[]; }; MHMM = derive2 { name="MHMM"; version="1.0.0"; sha256="0d3djaydw0h7x3vlaghrbgmx024rgv36wfsjhlixzzssb2d6lqzi"; depends=[BH ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; }; MHTdiscrete = derive2 { name="MHTdiscrete"; version="1.0.1"; sha256="0czpsk4jiwbzd6g2dwssmggsdhwchikmc1skv48d9j4xvglns7yw"; depends=[]; }; MHTmult = derive2 { name="MHTmult"; version="0.1.0"; sha256="1y3vh2kab6nfkiz4nzdhrpy9h6drk1ibfd2h62hpr3y09z9a2yld"; depends=[]; }; @@ -2826,7 +2838,7 @@ in with self; { MLDAShiny2 = derive2 { name="MLDAShiny2"; version="0.1.0"; sha256="1mx8js54mrrf16jriy467dysxpkcsza9fvdmpdbmxr5m3y564sc7"; depends=[caret DiscriMiner dplyr e1071 klaR MASS rhandsontable rmarkdown shiny]; }; MLDS = derive2 { name="MLDS"; version="0.4.901"; sha256="0zswlng1vksnx1m6ycna2hbqmzzcfpqz1wgy519fr0j87bqxks69"; depends=[MASS]; }; MLDataR = derive2 { name="MLDataR"; version="0.1.3"; sha256="13jfq4i0dz9nwkzfkc6lx52cni23q4369lmca7vd0jfzffn4zzvv"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; - MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; + MLEcens = derive2 { name="MLEcens"; version="0.1-5"; sha256="0cdl0y44clds4sg8hikhk354a5xrfbyfg8lxrbh1bfg410rkj186"; depends=[]; }; MLGL = derive2 { name="MLGL"; version="0.6.5"; sha256="1qrqw39hghdlbrs0dkv38awrgwdf8lj95rhb3hixcc6nfb2lkr8j"; depends=[FactoMineR fastcluster gglasso MASS Matrix parallelDist]; }; MLGdata = derive2 { name="MLGdata"; version="0.1.0"; sha256="0ysvrnx8m903h99wr40zgg1c6d26m9vsh62zjxh8mvndh69ikzid"; depends=[]; }; MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; @@ -2835,8 +2847,8 @@ in with self; { MLModelSelection = derive2 { name="MLModelSelection"; version="1.0"; sha256="1qfy2rfx2nvkwisl9wwllqsq2qhqzsdmrh90z5zn5qs07d0305wn"; depends=[MASS Rcpp RcppArmadillo RcppDist]; }; MLMusingR = derive2 { name="MLMusingR"; version="0.1.0"; sha256="1yq5ifp12k1pd59s5m1306934f4f2l9vlhqlfg22vcr7l9pqkw9s"; depends=[lme4 Matrix nlme]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; - MLVSBM = derive2 { name="MLVSBM"; version="0.2.2"; sha256="0cxjk89i1pjq829168ad30dw73x65ywsc4d6vj6q6wlg746a1izf"; depends=[ape blockmodels cluster magrittr R6]; }; - MLZ = derive2 { name="MLZ"; version="0.1.3"; sha256="0yj9241k3yk8qy6w2q26gwbj9b9qynv3s3jpyfxixvkc9kji3wc2"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; + MLVSBM = derive2 { name="MLVSBM"; version="0.2.3"; sha256="15q4n46rjl4702kr6kzdinhqy0qwi1rmz968rpr3rsk6930vpyn8"; depends=[ape blockmodels cluster magrittr R6]; }; + MLZ = derive2 { name="MLZ"; version="0.1.4"; sha256="0kvwv13gklilpmqrc939lm1npyvmg8hrxy8m8vfpvrc5jgli49mx"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLeval = derive2 { name="MLeval"; version="0.3"; sha256="1g2w5lrr7199n4zyaalbp9xdgl858hdg1pqr3rpd7v5fmamawc69"; depends=[ggplot2]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; MLpreemption = derive2 { name="MLpreemption"; version="1.0.1"; sha256="0fvrl7ahaiv93sq637yhf18j8bf3w28f0l4b8sjs2ssc5pbg1448"; depends=[]; }; @@ -2859,16 +2871,16 @@ in with self; { MNLR = derive2 { name="MNLR"; version="0.1.0"; sha256="0q80232ndp7pkklzqdbga1vf51dmsxaivm4ia4wah32rc2c87fqp"; depends=[caret e1071 nnet rmarkdown shiny]; }; MNLpred = derive2 { name="MNLpred"; version="0.0.8"; sha256="0wb1a3d5s9hrv3sw8g1vyr9w9gmig4sdj3l339cv5cjfca75swns"; depends=[MASS]; }; MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; - MNP = derive2 { name="MNP"; version="3.1-2"; sha256="1w27vx68k6ysh6vz8957242xwklj8b8hakmdpzra12pph332plbq"; depends=[MASS]; }; + MNP = derive2 { name="MNP"; version="3.1-3"; sha256="1kaw8kvmi1m4a7k17l6ikp89fksh6l2f53bz1h3n80da259rbhbi"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; - MODISTools = derive2 { name="MODISTools"; version="1.1.1"; sha256="0188cffsnpy7nmb0c03i64674xyizx6imkymrwsj3mf9s77wa2v0"; depends=[httr jsonlite memoise raster sf]; }; - MODIStsp = derive2 { name="MODIStsp"; version="2.0.6"; sha256="1rgms8041f3gk5x97nhr9hzcnc3qim3w12f5hm2q68m54bhjg2mw"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; + MODISTools = derive2 { name="MODISTools"; version="1.1.2"; sha256="1br5kpkz3addnndh6740ppkg3xswpdc6fj9x776rswrjmrhazzm7"; depends=[httr jsonlite memoise raster sf]; }; + MODIStsp = derive2 { name="MODIStsp"; version="2.0.7"; sha256="1qv01v6crffd90qjhm9qlaw6lmphlnhv4x2dk0rqskrqdp8mbiq8"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; - MOSS = derive2 { name="MOSS"; version="0.2.0"; sha256="1sgyjswvr34js96avv5czqil6jlvn53l8wdj28lqicm8m5c9qkwq"; depends=[cluster dbscan Rtsne]; }; + MOSS = derive2 { name="MOSS"; version="0.2.2"; sha256="0gjsyv74hhjknlnplc8157mmypnfy1yjrs400pz0p4744k5c8c7s"; depends=[cluster dbscan Rtsne]; }; MOST = derive2 { name="MOST"; version="0.1.0"; sha256="0nmjx5hsn67hdglcqyanq3az76rs15knv8qy28f8paah5s9w24xf"; depends=[]; }; MOTE = derive2 { name="MOTE"; version="1.0.2"; sha256="17y2l2rmw7fhvknyh5z09i7hd8nhamx12g00rcymp75gqkz9lzc7"; depends=[ez MBESS reshape]; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; }; @@ -2877,6 +2889,7 @@ in with self; { MPCI = derive2 { name="MPCI"; version="1.0.7"; sha256="1l55q09lliv0y4q1hc0jgzls47wkmsfag6b4iq5y6wrllr5wq7sa"; depends=[]; }; MPDiR = derive2 { name="MPDiR"; version="0.1-20"; sha256="1mm4mv042jr0n7z5cdaij39zrg2475p83gd3dxq6krz9yq8ii1q3"; depends=[]; }; MPGE = derive2 { name="MPGE"; version="1.0.0"; sha256="10lzkk8fhpxd1z4yp051q3k36fsvddrwssv7nn03r2bkp6q8rpzb"; depends=[car purrr]; }; + MPI = derive2 { name="MPI"; version="0.1.0"; sha256="081yhbk3qz5935yz5n1391x3hpj8m0cbj1p81snhb9n8h0agwgv0"; depends=[doParallel dplyr foreach purrr tidyr]; }; MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; }; MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; }; MPN = derive2 { name="MPN"; version="0.3.0"; sha256="0rrigkq5bkarncswv8kgvvwd1vrq5cqnb5vypa9d39q2ksqf8j3d"; depends=[]; }; @@ -2895,7 +2908,6 @@ in with self; { MRFcov = derive2 { name="MRFcov"; version="1.0.38"; sha256="1ajpnxx49zpmph21x0q4x9w4fjpi43s8sqm294i0l883khyx6ljg"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; - MRPC = derive2 { name="MRPC"; version="3.0.0"; sha256="1lqqfffqvzvp7g3phrjcra0n52lcl2xywibh0vizc85fkkp1clbd"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRReg = derive2 { name="MRReg"; version="0.1.4"; sha256="0krk9l46ls74dldilkkdf1b202awnql8r138fkxj4h6n8x3psysw"; depends=[caret igraph]; }; MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; @@ -2925,14 +2937,13 @@ in with self; { MTA = derive2 { name="MTA"; version="0.4.0"; sha256="1vx0m1jf74hsf2lxz7wnns3q3n08vidvp1zmm2j4vxn5yywl3p50"; depends=[igraph sf]; }; MTAR = derive2 { name="MTAR"; version="0.1.1"; sha256="17r2da1hdvs8qvgar87zdl51jy8w30vczcsi6jrq0rdyi1lld641"; depends=[CompQuadForm MASS Matrix]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; - MTE = derive2 { name="MTE"; version="1.0.1"; sha256="0ybzf8fsysxld9d17jh1wggglaa58n5szynnrhif12cifgcrl2dx"; depends=[glmnet quantreg]; }; + MTE = derive2 { name="MTE"; version="1.0.2"; sha256="11kbh6sphzyn2k279sfpgyvr32hpggh98cz1saszlpsfg9l8xdn0"; depends=[glmnet quantreg rqPen]; }; MTLR = derive2 { name="MTLR"; version="0.2.1"; sha256="070121qn7vmxmxgvzv7ymhk19j9kxks4xa7qpd8vkc2rp3ara4cp"; depends=[Rcpp RcppArmadillo survival]; }; MTPS = derive2 { name="MTPS"; version="1.0.1"; sha256="1jdlw943ywmrp64w1qrjqymqjh2jahnq0i5px8af1l3msznj20x4"; depends=[class e1071 glmnet MASS rpart]; }; - MTS = derive2 { name="MTS"; version="1.1.1"; sha256="0mb7h4h94a2x104ybkg9836k3szdimlcdccwxjc5naarxhdifv60"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; }; MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; MUACz = derive2 { name="MUACz"; version="2.1.0"; sha256="1d771vb2aimr87kyqj7zkmwarmxcxzbh7mvr396pf2zr3h8wi30c"; depends=[dplyr epiDisplay ggplot2]; }; MUS = derive2 { name="MUS"; version="0.1.6"; sha256="0xid624rz0mvd03iy7ydvmx7gkscvsg4kdbaf2nji54ahai3pmn3"; depends=[]; }; - MVA = derive2 { name="MVA"; version="1.0-7"; sha256="00vng8z157qn0bj2mcnz31r6mn1a119vja9pzhpdkhkbvvd6ph5v"; depends=[HSAUR2]; }; + MVA = derive2 { name="MVA"; version="1.0-8"; sha256="1xd75qah05jrljl72gr8xzhfj43mnf821jnjv38gflavkvyn89mv"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="5.9"; sha256="014s07nxq014j5hkbd6iwwqykcw8si5sah57gi3n0wb51sv8ip1k"; depends=[boot car energy MASS moments nortest plyr psych]; }; @@ -2950,7 +2961,7 @@ in with self; { MXM = derive2 { name="MXM"; version="1.5.2"; sha256="0h95v74sk0c10i1rvbbl6f98spv86jfz7xji3d3wd1v4zacq3hhz"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack Hmisc knitr lme4 MASS nnet ordinal quantreg relations Rfast Rfast2 survival visNetwork]; }; MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; - MachineShop = derive2 { name="MachineShop"; version="3.3.0"; sha256="1xrj6c0bryd2dldh2npaqznzvy4588jx4lplhsgffn07j4z0wz9g"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; + MachineShop = derive2 { name="MachineShop"; version="3.4.0"; sha256="0zr0gga2h9g7swr8y7lazl4jx9rb2n0dasczjflfka8xfi26dngq"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; @@ -2962,14 +2973,12 @@ in with self; { Map2NCBI = derive2 { name="Map2NCBI"; version="1.4"; sha256="1ssqnm9g5p0nnhdyp9dqbbsz3hw8jzdwy0rv3csp8fxm0f1bi1kb"; depends=[rentrez]; }; MapGAM = derive2 { name="MapGAM"; version="1.2-5"; sha256="0ardqsa7smx0syh1l591bm6a1rb7kvcyw3rlb3hkfk8rk4k60qmr"; depends=[colorspace gam maptools sp survival]; }; MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MultBiplotR MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; }; - Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.6"; sha256="0zbg72vck9p14zk1924407n5ap84qiisqhbq1vr715sw67fwdcxi"; depends=[]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.0"; sha256="0jwp8rzv0ghir8k7dfmfrq4rvcqf7xww6va16p3jj2nk3r9hiq0x"; depends=[betareg boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; MarketMatching = derive2 { name="MarketMatching"; version="1.2.0"; sha256="075maishssvjrx0jfmxcfiv2rlhnm0c4dnp6ija3bn5z80i6z91m"; depends=[Boom bsts CausalImpact doParallel dplyr dtw foreach ggplot2 iterators reshape2 scales tidyr utf8 zoo]; }; Markovchart = derive2 { name="Markovchart"; version="2.1.4"; sha256="12wbirvz90k6aak3dijn0dq3x8gxz7842n4nrgxkd2d0szysrciq"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.2"; sha256="0p234zs7lvi83fv02mijrhp7hmr5cklddayb61krhx1h2hn4gzb9"; depends=[gtools matrixcalc]; }; - MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; MasterBayes = derive2 { name="MasterBayes"; version="2.57"; sha256="0f8rc6799nji03slal27gbmprndy3dby0hhsmg2rm9l4ki44vz2y"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; @@ -2979,7 +2988,7 @@ in with self; { MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; - Matrix = derive2 { name="Matrix"; version="1.4-0"; sha256="1xh62bwcly1blpvnagbhjym1qgw87yir3c72ylhvcla05rq67d62"; depends=[lattice]; }; + Matrix = derive2 { name="Matrix"; version="1.4-1"; sha256="0zigzgx4dv7ydcyppr5ypna9dxi9vzi944pgy07jnj4l3qflzcj2"; depends=[lattice]; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; }; MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.5"; sha256="192pmfm8csvs2lf2hxpsj542lrd8b74rg4wzmz3s3m9i98pd0h4d"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; @@ -2997,7 +3006,7 @@ in with self; { MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.7.6"; sha256="07qr6cwa29brsp567vjhfv8pkqijxhhz98bxvagrpjj5gbx1179s"; depends=[cleangeo countrycode dplyr magrittr MazamaCoreUtils rgdal rgeos rlang rmapshaper sp stringr]; }; - MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.2"; sha256="1snx71jcv9q1fw7njfccd0lvgi3mim6sahzcnc6136pblnjs29kg"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils readr rlang stringr]; }; + MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.5"; sha256="1wmw38gz1v7iv514nz4lyya7dgk3rwhizz73gjzdfsbjcnwjqg8f"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils rlang stringr]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeTo = derive2 { name="MeTo"; version="0.1.0"; sha256="14hdyh3p3q8yb9w2li2y9pc356jnymsn6n2750zdsrh52b751lpm"; depends=[lubridate]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.1"; sha256="11q1yn6l697qa33wqik9y9lji39r6pph109yxkkprg9p80c187xy"; depends=[]; }; @@ -3011,14 +3020,13 @@ in with self; { Mercator = derive2 { name="Mercator"; version="1.1.1"; sha256="0jg5dm65smq67k35p8acqd5kdsv7py8plaamagbsc84617r0iaik"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; - MetBrewer = derive2 { name="MetBrewer"; version="0.1.0"; sha256="1wf8bpsj9py69x7k4i18na0rr2d1f3bw3jds94jr13g7m70i6js7"; depends=[]; }; + MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; }; MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; MetSizeR = derive2 { name="MetSizeR"; version="2.0.0"; sha256="0blfdcd8z6qbaz47q08arb94wh3cp689w7vsc3jvn3cqq7r35byl"; depends=[dplyr ggplot2 MetabolAnalyze Rfast shiny shinythemes vroom]; }; MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; }; - MetaClean = derive2 { name="MetaClean"; version="1.0.0"; sha256="12vgdizggyz6wx08qf34jfhwgpzfrkgq63fvhfgi5gbf1nhma5zz"; depends=[BiocStyle caret fastAdaboost ggplot2 graph kernlab klaR knitr MLmetrics plotrix randomForest reshape2 Rgraphviz rpart xcms]; }; MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; }; MetaCycle = derive2 { name="MetaCycle"; version="1.2.0"; sha256="1lh1msrcz70p5jixz5j83pqa3cid21y7m1zvlk872k16awmif00k"; depends=[gnm]; }; MetaDBparse = derive2 { name="MetaDBparse"; version="2.0.0"; sha256="0ssbjm9x3f7j2blpjdjfcsrp2486g55rwkw7xhlkrw307q6i40gq"; depends=[ChemmineR cmmr data_table DBI enviPat gsubfn Hmisc httr jsonlite KEGGREST pacman pbapply progress R_utils rcdk RCurl Rdisop readxl reshape2 rJava RJSONIO rlist RSQLite rvest SPARQL stringi stringr webchem WikidataQueryServiceR XML xml2 zip]; }; @@ -3035,6 +3043,7 @@ in with self; { MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3.1"; sha256="070qws759nczjrfdlh7jpbyjz4z3zm1hzb7vcvfgfks82wwb2ny0"; depends=[ellipse gplots gtools mclust mvtnorm]; }; MetabolicSurv = derive2 { name="MetabolicSurv"; version="1.1.2"; sha256="1c8i3a3gnbvlkjh0vqmz1igzaf8q87cb55l3kijwi0z23ywrbqch"; depends=[dplyr ggplot2 glmnet matrixStats pls Rdpack rms superpc survival survminer tidyr]; }; MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.2"; sha256="0gd93l9rm00x9g6ffppywpbccmhxgl4s4z4ba7al8lpjval9srzw"; depends=[C50 caret e1071 mixOmics pcaMethods plyr rlang ropls rpart]; }; + MetaculR = derive2 { name="MetaculR"; version="0.2.0"; sha256="1ga93jl0nwwqzl4lnfjm60ivgjl2k0s6nl2zjnw27qzqpdpnrasb"; depends=[dplyr ggplot2 httr jsonlite magrittr progress tidyr verification]; }; MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; @@ -3053,11 +3062,10 @@ in with self; { MicSim = derive2 { name="MicSim"; version="1.1.0"; sha256="0nkprbb9lgnfzl1bj0k4rkd7v8g35cvhl9bqa91q2lc2rimzfl20"; depends=[chron rlecuyer snowfall]; }; MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; - MicroMoB = derive2 { name="MicroMoB"; version="0.0.11"; sha256="1a3fknakn98k73mkfk81fypznhhr2npd9w34s57yaqj5z3c4i5xj"; depends=[abind extraDistr httpuv jsonlite plumber]; }; + MicroMoB = derive2 { name="MicroMoB"; version="0.0.12"; sha256="09zr9synk4l17ylhsxxhil7wqnwg85j0bppqx53rc3gjk2v8v6ir"; depends=[abind extraDistr jsonlite]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; - MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; }; MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.1"; sha256="1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest phyloseq statmod]; }; - Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.3"; sha256="17zlkbap7svj7g3jk1jb7582crkfsgh4xka4nmzaj3lzkwwx429k"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; + Microsoft365R = derive2 { name="Microsoft365R"; version="2.3.4"; sha256="1vra4g8xgpvy1i6ny1rkvi7xsc0za7i6dsldlbnf6mh5jqi3nhsm"; depends=[AzureAuth AzureGraph curl httr jsonlite mime R6 vctrs]; }; MinBAR = derive2 { name="MinBAR"; version="1.1.3"; sha256="0d0l7sr99kg6s0pxw10zrnwz699kzqaylawymd7kggc3dag9frbx"; depends=[dismo ecospat geosphere lattice latticeExtra maxnet raster rgdal sp]; }; MinEDfind = derive2 { name="MinEDfind"; version="0.1.3"; sha256="1y0iv92mp7hf14vrj54qd0yvmjrv52jv3vg25kc5q7pml63njkqa"; depends=[ggplot2 gridExtra Iso]; }; MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; }; @@ -3085,7 +3093,7 @@ in with self; { MixtureMissing = derive2 { name="MixtureMissing"; version="1.0.2"; sha256="03ql591891jvhycagkjl5gj83mjlrv5m95kpgkgph8gim71q2di1"; depends=[cluster ContaminatedMixt MASS mnormt mvtnorm rootSolve]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; MoBPS = derive2 { name="MoBPS"; version="1.6.64"; sha256="12czwx362pn0crj047rqb9ambl1fw73k474i7vcxhz53kbw21wj0"; depends=[]; }; - MoEClust = derive2 { name="MoEClust"; version="1.4.2"; sha256="13bc5ypq95f56mimqgmvvzhbsgm2j6j6bwigk6kx68l2qvzj12vl"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; + MoEClust = derive2 { name="MoEClust"; version="1.5.0"; sha256="1w9xb35xlh0j020fpf7ivji46rbg7fyvqrf7a695rr8da6lpiiif"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoMPCA = derive2 { name="MoMPCA"; version="1.0.1"; sha256="1snixlq35xbzf005d877i493sf1wm48jqlq9515yl1s6lxmav1n7"; depends=[doParallel dplyr foreach magrittr Matrix slam tm topicmodels]; }; MoTBFs = derive2 { name="MoTBFs"; version="1.4"; sha256="1b69wzsy0wnzgbk04x363wb1dfnxz610sn8d28cn2akvf7n8na70"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; @@ -3093,16 +3101,15 @@ in with self; { ModStatR = derive2 { name="ModStatR"; version="1.3.1"; sha256="16mfggplpmjz2kspfa99q4gbm4avm306d83n8hiki382094li1ni"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; ModTools = derive2 { name="ModTools"; version="0.9.4"; sha256="111rhdw917rynwsh6l6nsma5pjyi3ix9gjy5fx620d6ywcq7b227"; depends=[AER C50 car class DescTools e1071 lattice lmtest MASS naivebayes NeuralNetTools nnet pROC pscl randomForest relaimpo robustbase rpart rpart_plot sandwich survival]; }; Modalclust = derive2 { name="Modalclust"; version="0.7"; sha256="0ymzdxp6rh6baih1xm6kj8l8jxjclvnmq0gfp38cl8lpskspb26x"; depends=[class mvtnorm zoo]; }; - ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; ModelMap = derive2 { name="ModelMap"; version="3.4.0.1"; sha256="1279k5hznxrb6fq4zd1baw1pm5dj5437g5awkgb8kp7ll8raa2ql"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; ModelMatrixModel = derive2 { name="ModelMatrixModel"; version="0.1.0"; sha256="0w8j32b2yw7x8lr1a9bgs4ylxfsxw8m06q7xpgsiz6sjicspc714"; depends=[Matrix]; }; ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.2.2"; sha256="0mrlsw4c5y1vdsqynxr2dcvmhh5h37pnd71jw5a5djpbda9g21jy"; depends=[data_table Rcpp]; }; Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; }; Modeler = derive2 { name="Modeler"; version="3.4.5"; sha256="15gbg5568qj81wp6yy31amb2b7wl1wvlmgpmdp29lvz1p33jx2y1"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; }; - MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="1.0.3"; sha256="0x3mgpfqgrwijaz9i7plhgyz9m7nwwad8njnfa4a3n98mzdzv1mi"; depends=[arrow aws_iam aws_s3 httr MolgenisAuth urltools xml2]; }; - MolgenisAuth = derive2 { name="MolgenisAuth"; version="0.0.18"; sha256="1qhk0vd9h0wark87ic6vdmdrdxvzvw3192lnmq3ibzb6k9ah2qqm"; depends=[httr urltools]; }; + MolgenisArmadillo = derive2 { name="MolgenisArmadillo"; version="1.1.3"; sha256="0vs0ay6jfpsaq8v3s2r580v0vsr0g44shszqkiqb6gsgvhkmv6fg"; depends=[arrow aws_iam aws_s3 httr MolgenisAuth urltools xml2]; }; + MolgenisAuth = derive2 { name="MolgenisAuth"; version="0.0.21"; sha256="0w3634z406gx334yk23spck2ryd2sz9cvd7rgl5lmr4rl06dd5rk"; depends=[httr urltools]; }; MomTrunc = derive2 { name="MomTrunc"; version="5.97"; sha256="1rgynsx4nh09pzm1klk648xg45xicx03xik1q01nbqhx9m9v9j6d"; depends=[hypergeo mvtnorm Rcpp RcppArmadillo tlrmvnmvt]; }; - Momocs = derive2 { name="Momocs"; version="1.3.2"; sha256="1rjfq4vp5n8352v9yqaflcrzj3ysanzbacvx0qzj5k50my7grnhg"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp tibble vegan]; }; + Momocs = derive2 { name="Momocs"; version="1.4.0"; sha256="08p2kjgfq7h7pwn4lqsfcy4d7rml6n0s1fb90l0iy1a88brbd3br"; depends=[cluster dendextend dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp tibble vegan]; }; Mondrian = derive2 { name="Mondrian"; version="1.1.0"; sha256="1x40cdry6dwixwqx10kv42xr4254kj1f17va186haw9m949xn5gd"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="2.0.0"; sha256="0b5flc9l4nshy2fmwxbzcsn7pdivwy3x6kic94ppyyiqzz41h0b1"; depends=[codetools DBI digest testthat]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; @@ -3114,15 +3121,14 @@ in with self; { Morpho = derive2 { name="Morpho"; version="2.9"; sha256="1gsns3ab9x24czl53p15cja9vw881iwnhc0ix50i8vzkx184wsib"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorphoTools2 = derive2 { name="MorphoTools2"; version="0.9.1.2"; sha256="0ddjk39jz46xnig1b6iv5qdpxmwh76i4axfchghiy17hbpacbdlg"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; - MortCast = derive2 { name="MortCast"; version="2.6-1"; sha256="0w7fd5n3wafix4l29svnja0l675pdpj64vgh113mzsn08h3kpwid"; depends=[wpp2017]; }; + MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; MortalityLaws = derive2 { name="MortalityLaws"; version="1.9.3"; sha256="12sfc4lhp01caknpw25gmchh8gv2wjlgpq0lby7iayl9lnsg1x92"; depends=[minpack_lm pbapply RCurl tidyr]; }; MortalityTables = derive2 { name="MortalityTables"; version="2.0.3"; sha256="0ldj8gq5xpbxkjcvdysrcq7a0xv7caz1rc8v6bpn5hkr866lqnmw"; depends=[ggplot2 pracma scales]; }; - MplusAutomation = derive2 { name="MplusAutomation"; version="1.0.0"; sha256="0hkz76gmmz1cpsjmz7jscwvdc8aar1g9468b5cr21zyl5slna0cg"; depends=[boot checkmate coda data_table digest fastDummies ggplot2 gsubfn lattice pander plyr rlang texreg xtable]; }; + MplusAutomation = derive2 { name="MplusAutomation"; version="1.1.0"; sha256="011sd6v0zd5yr842k69fc8fn12lf7vw3v0rqmjwp6b2c8drw1b51"; depends=[boot checkmate coda data_table digest fastDummies ggplot2 gsubfn lattice pander plyr rlang texreg xtable]; }; MplusTrees = derive2 { name="MplusTrees"; version="0.2.1"; sha256="0bc8663h746wxrb4x1b65k013byfpz80l9mz0090jwa3q710g506"; depends=[MplusAutomation nlme rpart rpart_plot]; }; Mqrcm = derive2 { name="Mqrcm"; version="1.2"; sha256="1alfv76b90frimihjcq8whzqkwvhnnw2fd92nrfpnfj5dw0b56f5"; depends=[Hmisc pch]; }; MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.2"; sha256="1hd0lvvy12r6kxa64vwnjavyv2f7a9jqgjxgmlw86wwh5g09hvfd"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; }; - MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; MtreeRing = derive2 { name="MtreeRing"; version="1.4.5"; sha256="1i6ljz950n9fpgci9b5777dg3b88ihhz8jvyw621hg218imswhxz"; depends=[bmp dplR dplyr imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat_geom tiff]; }; MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; @@ -3167,12 +3173,11 @@ in with self; { MulvariateRandomForestVarImp = derive2 { name="MulvariateRandomForestVarImp"; version="0.0.2"; sha256="0gbr44rwwb4nq2s4ix1ckfdjahsfx9sjfbww5wjcm1v68w6bk5ca"; depends=[MASS MultivariateRandomForest]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; My_stepwise = derive2 { name="My.stepwise"; version="0.1.0"; sha256="10wka6kzk8krwdsyjfnn78dfqflq4zg3vjkk0i2ywjm5vap6aqa5"; depends=[car lmtest survival]; }; - Mychisq = derive2 { name="Mychisq"; version="0.1.2"; sha256="0yf1xgrp5gajla7prb1524586662wnjjjkc1xpyim6zfjkg89rbr"; depends=[]; }; + Mychisq = derive2 { name="Mychisq"; version="0.1.3"; sha256="0667ldi1qm47cpdr0j7gv7c6f8s5wj7naqcgv9harrsmm4vsr4w6"; depends=[]; }; N2H4 = derive2 { name="N2H4"; version="0.6.1"; sha256="00bbdy2f4bsb8b4j6n2zhmp7zif79yx14g4f4jylh1050r1y31rk"; depends=[dplyr httr jsonlite lubridate rvest tibble urltools]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; NACHO = derive2 { name="NACHO"; version="1.1.0"; sha256="0ji9kcfbnsrn6h4p0y0ly5nwyfwh3y01wm80a7syg4mjj0nd4z0g"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; - NADA2 = derive2 { name="NADA2"; version="1.0.1"; sha256="01x3ylrp3kizq9aa0wyaj4jbyr4si2vi8rc3b8r0bllnsl2ia2ix"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; NADIA = derive2 { name="NADIA"; version="0.4.1"; sha256="11ijx9zs9r7s83mjhr7j6wrhz03mhwcrfsl4km6izmm36qa2vslm"; depends=[Amelia data_table doParallel foreach glmnet mice missForest missMDA missRanger mlr3 mlr3learners mlr3pipelines paradox softImpute testthat VIM]; }; NAEPirtparams = derive2 { name="NAEPirtparams"; version="1.0.0"; sha256="0qhfmkhi38z27ky3xbkvra5r6lw3kj9p3xrblm9j2657rj9kxc9j"; depends=[]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; @@ -3191,7 +3196,7 @@ in with self; { NBShiny = derive2 { name="NBShiny"; version="0.1.0"; sha256="0hcmdhj26hc3c8d5nb6yb7amv0rbdxywima0l0jqkxipx56idlcx"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; NBShiny2 = derive2 { name="NBShiny2"; version="0.1.0"; sha256="0w4f19av8zl220zq3flmlqn86ivikclnsnkd7bc1wafhr12hmygp"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; NBShiny3 = derive2 { name="NBShiny3"; version="0.1.0"; sha256="1p0n4jpzdaqwpidxairwpgc8qrdvr1r7cammpgnzc6a9ar2hcw1g"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; - NCA = derive2 { name="NCA"; version="3.1.1"; sha256="11ky58kydmy9jrw33mzhi65wxd60wn5zvp77ml10zms78v7yvl04"; depends=[doParallel foreach ggplot2 gplots iterators KernSmooth lpSolve plotly quantreg sfa]; }; + NCA = derive2 { name="NCA"; version="3.2.0"; sha256="0m5w9il4h2annj06rj8zwvjkbz74hwmpr93wyzpdhzw9h6i8917x"; depends=[doParallel foreach ggplot2 gplots iterators KernSmooth lpSolve plotly quantreg]; }; NCSCopula = derive2 { name="NCSCopula"; version="1.0.1"; sha256="0amxp9daqp9bhz61hrq1dk88ai5xfd5sp3538rf3xwgs6walycr4"; depends=[copula]; }; NCSampling = derive2 { name="NCSampling"; version="1.0"; sha256="0bv93xffnzvbip86b3pg7apxzh3410mxff77q119m0z7f6vm3fam"; depends=[lattice randomForest yaImpute]; }; NCmisc = derive2 { name="NCmisc"; version="1.1.6"; sha256="0ycc7b7z26a922hdjq8p4hjljjh09il24h3023k248pcsnbmka1a"; depends=[proftools]; }; @@ -3215,7 +3220,7 @@ in with self; { NHSDataDictionaRy = derive2 { name="NHSDataDictionaRy"; version="1.2.5"; sha256="17jvyjxc28bmxadvcjhal4shklh24636zw6hrc7p7m71lbcw86aw"; depends=[dplyr httr magrittr purrr rvest stringr tibble xml2]; }; NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.3.0"; sha256="1l4zrprnb3fsb2mibq8749a15xbvhn1g5yajbjf7gls81c8f2r7p"; depends=[tibble]; }; NHSRplotthedots = derive2 { name="NHSRplotthedots"; version="0.1.0"; sha256="1rqryqaxyb3d6kws8mznsnzv19h8nhn1323vkh9zq59la9r3kiai"; depends=[assertthat crayon dplyr ggplot2 NHSRdatasets rlang scales]; }; - NIMAA = derive2 { name="NIMAA"; version="0.1.0"; sha256="0qi99iwvr8362zm4lxq6vbw5l47r5246zvsa9p1y3ragc7s1qahc"; depends=[bipartite bnstruct crayon dplyr fpc ggplot2 igraph mice missMDA networkD3 plotly purrr RColorBrewer scales skimr softImpute tibble tidyr tidytext visNetwork]; }; + NIMAA = derive2 { name="NIMAA"; version="0.2.0"; sha256="04zg5s8icsq23ryyscqrm8xsz2j9pgrkgy356wijkqkzlnhbdpib"; depends=[bipartite bnstruct crayon dplyr fpc ggplot2 igraph mice missMDA networkD3 plotly purrr RColorBrewer scales skimr softImpute tibble tidyr tidytext visNetwork]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NIRStat = derive2 { name="NIRStat"; version="1.1"; sha256="07l4ca7d9q840iy5a80sqafrlv20534jw65wzxs90j2d0jx4acs9"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; @@ -3227,7 +3232,7 @@ in with self; { NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; }; NMADiagT = derive2 { name="NMADiagT"; version="0.1.2"; sha256="0fskc3ldfdl17gazpfr2hixy79n7db4c1f5yl1jalhwxiabnxjwp"; depends=[coda ggplot2 imguR ks MASS MCMCpack plotrix Rdpack reshape2 rjags]; }; NMAoutlier = derive2 { name="NMAoutlier"; version="0.1.18"; sha256="0h0pxjg6ppz9zv7wcv1dka5g0f9wxk3bnwicfpsv1advcam4vmmn"; depends=[ggplot2 gridExtra MASS meta netmeta reshape2]; }; - NMF = derive2 { name="NMF"; version="0.23.0"; sha256="0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; + NMF = derive2 { name="NMF"; version="0.24.0"; sha256="14yxra6in5c1md5nr75y8cdmh9pg0lxqabqflvlhgg1vbg9i2628"; depends=[Biobase BiocManager cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; }; NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMMIPW = derive2 { name="NMMIPW"; version="0.1.0"; sha256="13mv6dpmlldqxkxq6kiydsfwyys5w7i8ws80a5l3377i5chdqi2c"; depends=[lava nloptr numDeriv]; }; @@ -3236,7 +3241,7 @@ in with self; { NMdata = derive2 { name="NMdata"; version="0.0.11"; sha256="0yzjrx885zq7pnajm3s2nxjcza8pcxbn0ni60bwvr85havcs1wpj"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.7"; sha256="0sri85n5i5w56bmbcg3yca3r5lh9j59gwwjidwhvxvxbg6czw6n7"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI reshape2 rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.8.5"; sha256="0yf0r6zvxydwj883ahvp5mx2pr9qifrkiizd0mnc8w7g6cmw7bm8"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; + NNS = derive2 { name="NNS"; version="0.8.61"; sha256="195hgfm3xn7bywkslzvkkrx3fc0km0kis4zfwjr5b63z93sxf8lg"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; @@ -3256,7 +3261,7 @@ in with self; { NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.3"; sha256="1bgdkm82pmzjv46pkxpvh5ffffmc6q68x5jjl7k330w9vwgx2kf0"; depends=[ellipse fastcluster ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; - NSAE = derive2 { name="NSAE"; version="0.1.1"; sha256="154jkajbs2l2yl4bbcrzn473i45hm3yr7nzb49hx084pn6h5lqsa"; depends=[rlist]; }; + NSAE = derive2 { name="NSAE"; version="0.2.1"; sha256="0pf1l8ms3shjgkgvfqx9vx78xjrdabw7j4j0c8krlixwmdf9xcr0"; depends=[rlist]; }; NSM3 = derive2 { name="NSM3"; version="1.16"; sha256="18wihr8qzdkyd6pwxq8yz2wrj0nh1sh713nflv4jiiczg6d965b8"; depends=[agricolae ash binom BSDA coin combinat fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSO1212 = derive2 { name="NSO1212"; version="1.4.0"; sha256="1wxp7rp43gl3xgwln8d1s7b7a5zhz4dlshf9dzgb2ippvjxjqbmc"; depends=[httr jsonlite]; }; NST = derive2 { name="NST"; version="3.0.6"; sha256="02frl4vpdw14gkgx7g0pi7zl342pkmszh48ggsf3b3qchsj5i1iz"; depends=[ape bigmemory iCAMP permute vegan]; }; @@ -3306,7 +3311,7 @@ in with self; { NlcOptim = derive2 { name="NlcOptim"; version="0.6"; sha256="121njnbfww6qijbc9x6prw35glyzm18di01qvvjn62z4kgq4f7vi"; depends=[MASS quadprog]; }; NlinTS = derive2 { name="NlinTS"; version="1.4.5"; sha256="045gqsy9q64mh10swm9a1bh8jvr41rjks3024cc195lad6jhj441"; depends=[Rcpp Rdpack timeSeries]; }; Nmisc = derive2 { name="Nmisc"; version="0.3.7"; sha256="1k43cp63h96xv3f28fpvw7p2yh3lv1jbhq9bdp3yk6cg0870vya7"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble tidyselect]; }; - Nmix = derive2 { name="Nmix"; version="1.2.1"; sha256="1jjzwcrb41m0jjfcylcgqv53psw88kmm3kq13n5c1s2nl3isk1i8"; depends=[]; }; + Nmix = derive2 { name="Nmix"; version="2.0.3"; sha256="072n4mmirzkfyd9mslx9mig5y8av0rzv3qvdrii8a3hyxn8i0wbq"; depends=[]; }; NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; @@ -3329,6 +3334,7 @@ in with self; { NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.2.0"; sha256="0n54kgxcj8w3r3iqdr13kia49b9zgxiki64h90yygpbg32hqdn8b"; depends=[ggplot2 shiny]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.8"; sha256="1xc4qz3i5pphgf17asyiafdnlhv5k88rw0fwkwfh8cz767wip1hw"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; + OBIC = derive2 { name="OBIC"; version="2.0.1"; sha256="0yrgnrhxn5nv0gbhzj2psskr12yaygv7bns64al1cgk18dlrsgb0"; depends=[checkmate data_table]; }; OBMbpkg = derive2 { name="OBMbpkg"; version="1.0.0"; sha256="01wch8wwij3fd0jambk0hpkhlnp4ryrq8qnnr2w1iad9zssjyii5"; depends=[]; }; OBsMD = derive2 { name="OBsMD"; version="6.1"; sha256="0jvvcx2lc39rdnlbhykam6cf94lbci9zc1vshwfhvygblnmjgrzr"; depends=[]; }; OCA = derive2 { name="OCA"; version="0.4"; sha256="0ci3c5kfv3v2h7cir1f7f8r2yd0iiz2wcab512nf36mf1y5k666s"; depends=[]; }; @@ -3353,6 +3359,7 @@ in with self; { OOR = derive2 { name="OOR"; version="0.1.3"; sha256="13v04rx2q6pbiq7dyd29wvimkr4sbq2f5rnn3a0lcbwr3x35r7h9"; depends=[]; }; OOS = derive2 { name="OOS"; version="1.0.0"; sha256="0jnj5y26rv0i2561mywcxb7aavmpq16ippq6rblb8jiqjd05nhib"; depends=[caret dplyr forecast furrr future ggplot2 glmnet imputeTS lmtest lubridate magrittr purrr sandwich tidyr vars xts zoo]; }; OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; + OPC = derive2 { name="OPC"; version="0.0.1"; sha256="0m7yqk3drj0zz4184bsvzhqzjxl0smfqdkkr7rpg8z3jk8qkvah1"; depends=[MASS]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; OPI = derive2 { name="OPI"; version="2.10.1"; sha256="0yzl3s0bkygwh1mg2fshf370k7hr0iw091k1jpwf92fvym1a68ia"; depends=[]; }; ORCI = derive2 { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; @@ -3372,7 +3379,6 @@ in with self; { OTE = derive2 { name="OTE"; version="1.0.1"; sha256="0jvvrrfhpc5kibbxrd5r4dj97jp5m072fxnkpcyz11gi65db3z4g"; depends=[randomForest]; }; OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; OTUtable = derive2 { name="OTUtable"; version="1.1.2"; sha256="1sm037ihm12xyp7ns5f0c1psflvm1aj3xnsj5nzh2rsjn35hvd6h"; depends=[]; }; - OTclust = derive2 { name="OTclust"; version="1.0.4"; sha256="11mr67zp68wzf1dd6vb3f31g8a430im97sdjsb0w4awqpmjdyyrz"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; }; OTrecod = derive2 { name="OTrecod"; version="0.1.1"; sha256="0rf50li6pnyi9lkxwlayq3190l85cxfmy3ldx0g6fr32ksfjsgfq"; depends=[dplyr FactoMineR mice missMDA ompr ompr_roi party plyr proxy rdist ROI ROI_plugin_glpk StatMatch vcd]; }; OUwie = derive2 { name="OUwie"; version="2.6"; sha256="0yh0hnlrimfqajl0qixs0ciiwpl9r38w9y1g9bhgvafj190ikb54"; depends=[ape corpcor geiger igraph interp lhs nloptr numDeriv paleotree phangorn phylolm phytools RColorBrewer]; }; OVtool = derive2 { name="OVtool"; version="1.0.3"; sha256="1ghfbvnfl092g0kikgjghgf0l1y7ihqykssfvvfi6q6pgzl8kz4y"; depends=[Amelia devtools dplyr EnvStats ggplot2 ggrepel glue magrittr metR progress purrr rlang survey tibble tidyselect twang varhandle]; }; @@ -3486,8 +3492,8 @@ in with self; { PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; - PDE = derive2 { name="PDE"; version="1.3.0"; sha256="1nz0xrhs2iin2grqvxhp99775q8wrjp7isyr1i415vi936jabs0i"; depends=[tcltk2]; }; - PDFEstimator = derive2 { name="PDFEstimator"; version="3.1"; sha256="0l9iq7jr266f44laxbhj23ngp5m4fimhxmr4nszajr0j3w14wmrl"; depends=[]; }; + PDE = derive2 { name="PDE"; version="1.4.0"; sha256="0qizclfaig2a6ybpa1qid2lhzasfb6i30vy6n4mv2765db7h5dkf"; depends=[tcltk2]; }; + PDFEstimator = derive2 { name="PDFEstimator"; version="3.2.1"; sha256="0a7p32i66lk0z838fcgk8r8l9x2j6hginhsahl5k4hq327h9d6sf"; depends=[]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; PDN = derive2 { name="PDN"; version="0.1.0"; sha256="082ydvwcjc2rs7hlakrkgbbm9c419m408a14a9dgfdwm16yif3jd"; depends=[ggplot2 glmnet network survival]; }; @@ -3518,10 +3524,11 @@ in with self; { PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-10"; sha256="08h9am4k69x3ayvp8ah42m2k989ii5j1lm9240v60l2dailij48m"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-11"; sha256="17czxqilgbh2v1kgjvqcz8m1cbjv4iygi5vn27wh1pyaga6sv8z9"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.9.5"; sha256="0grz5akbpb6i2dg8s9v34qr1zw1r8pczqw2amm6ihi8bxr799223"; depends=[digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; + PKPDsim = derive2 { name="PKPDsim"; version="1.1.1"; sha256="0h9rxwjh2cxn3mlpgwy86lrq6y820rhxjyxhjyi4l0k7j6cshlbd"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; PL94171 = derive2 { name="PL94171"; version="1.0.1"; sha256="0x7lymy8fg5r3w21an6ihrnrhsicnl4q382gx7pij9vlb82cy763"; depends=[dplyr httr readr sf stringr tigris withr]; }; @@ -3529,22 +3536,25 @@ in with self; { PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; PLMIX = derive2 { name="PLMIX"; version="2.1.1"; sha256="05mnzsi7y71cvg50qx8hp4m31gqslldl34k41r1f8npyb6ldpdca"; depends=[abind coda foreach ggmcmc ggplot2 gridExtra gtools label_switching MCMCpack PlackettLuce pmr prefmod radarchart rankdist rcdd Rcpp reshape2 StatRank]; }; PLNmodels = derive2 { name="PLNmodels"; version="0.11.6"; sha256="1vmcwh81cfkifbirqk2zs8pxn9ng1934q6cw478px9gaqgxfsyaa"; depends=[corrplot dplyr future future_apply ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr purrr R6 Rcpp RcppArmadillo rlang tidyr]; }; + PLORN = derive2 { name="PLORN"; version="0.1.1"; sha256="0x6rvg63mqc451rw0hpz1pjafdyxwraqhnj8cgbwjknhm5k4m1bl"; depends=[ggplot2 kernlab]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; PLSiMCpp = derive2 { name="PLSiMCpp"; version="1.0.1"; sha256="0dxfv2l2bbg0wfybk6w8p0m5skc9kx7i3ch72j9cvzvza0zqp2ln"; depends=[crayon Rcpp RcppArmadillo]; }; PLmixed = derive2 { name="PLmixed"; version="0.1.5"; sha256="03ivginsg1zhdxv5bzzmh6mxjz2b6qi8p4cq7sfm5q4llkld46x6"; depends=[lme4 Matrix numDeriv optimx]; }; PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; + PLreg = derive2 { name="PLreg"; version="0.2.0"; sha256="1639wclggbhq7pm0l350sk6fg6rinfidw4imdg4839wzifh16bjz"; depends=[BBmisc EnvStats Formula gamlss_dist GeneralizedHyperbolic nleqslv VGAM zipfR]; }; PMA = derive2 { name="PMA"; version="1.2.1"; sha256="1rhiylm3jfarnqdkv7nwg536sgsa30ic80dk9byks9w0wf4mn59s"; depends=[]; }; + PMAPscore = derive2 { name="PMAPscore"; version="0.1.0"; sha256="1zs1pybq693ffxyasv6vrhmxx6bqfasr61fv6p1v110492z6g8zr"; depends=[clusterProfiler glmnet maftools org_Hs_eg_db pROC survival survminer]; }; PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; - PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.3"; sha256="00sgk4c7vpmbfifrsbqd5gh7hwdpm8kymlpnnrdzlhvkymhbmfkn"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; + PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.4"; sha256="16m1pdrzjq9vnx5v7zv56mz9r1205rkw92883cxaqbvdpds6dhqy"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.17-0"; sha256="0p5gsagpk5w8nmpg49y74bj0gzk1qdpw1q9679p9qpwmc7xl3k6n"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.7.0"; sha256="0bjqahrnsgc5i506jcjcin62lgn9zx2hrpflpnqzhshkhinnxnbz"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; - PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.6"; sha256="0b3qdg3chgx4g40zyisn2an50brdp0yzzwszyi0cz26n9y302fjb"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + PNSIBGE = derive2 { name="PNSIBGE"; version="0.1.7"; sha256="0cs0bpb4fdkgznds579q7fblj0jay6wjyfhwpwc4y6z8ai1rhgja"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; PNWColors = derive2 { name="PNWColors"; version="0.1.0"; sha256="1phplnclkficfv8s6wsyrckk4ixzbayiy5iix6dddg40485l9nyj"; depends=[]; }; PO_EN = derive2 { name="PO.EN"; version="1.0"; sha256="1b4vcj6dnfji99nlskjvls996cmb1b2s3mfdammi07sdx625pvji"; depends=[glmnet pROC PUlasso Rcpp RcppArmadillo]; }; - POCRE = derive2 { name="POCRE"; version="0.5.0"; sha256="0aph1lmb0xkzm4l4ah2wrx13d138igf4k4w9wb9lca4vv6m7xzqf"; depends=[EbayesThresh ggplot2 pracma]; }; + POCRE = derive2 { name="POCRE"; version="0.6.0"; sha256="0kni15dr7qhldn68w51mzg6pyk95dx717qy0f9230hpbg97791hz"; depends=[EbayesThresh ggplot2 pracma]; }; POD = derive2 { name="POD"; version="1.2.0"; sha256="1xg2xzfmzg2qrwd02xy4fwsfmccigw6lm5266z6w1kxzb7p7bbw0"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; - POFIBGE = derive2 { name="POFIBGE"; version="0.1.5"; sha256="12isw4z9zy1sd153iwlsdch3ikqknn6cgl0xnmyv9dix8w8b0d2s"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; + POFIBGE = derive2 { name="POFIBGE"; version="0.1.6"; sha256="0llam63hjf1yi6qc44bpgr6dmc4b8sy0sn8gwcgzz50apsn1glc9"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; POINT = derive2 { name="POINT"; version="1.1"; sha256="0bkrsvcmm7927d7c56wr804a2wv5c1dn8y8zhf76433ckj45068x"; depends=[CompQuadForm Matrix rARPACK]; }; POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSTm = derive2 { name="POSTm"; version="1.1"; sha256="0ax0ky2xbaymw4fdipxvy1gh5wfnnm8hwxcg6hksasaz366widhm"; depends=[ape CompQuadForm]; }; @@ -3559,7 +3569,7 @@ in with self; { PPMR = derive2 { name="PPMR"; version="1.0"; sha256="07fky5xc1dmmn23wwdjm46c86i7q20dv5f2147828v52hhky873g"; depends=[Rcpp RcppArmadillo]; }; PPQplan = derive2 { name="PPQplan"; version="1.1.0"; sha256="072r7myqsnpyla37q6bj9glwvbygb9g8xkl60q055yzxmfh4rsbr"; depends=[ggplot2 plotly]; }; PPRL = derive2 { name="PPRL"; version="0.3.6"; sha256="08z7fnvz9wdsdba6n19qxg6n32azka9890w16jj7qpv25bpkqvl1"; depends=[Rcpp settings]; }; - PPTcirc = derive2 { name="PPTcirc"; version="0.2.1"; sha256="07z5561gkn1wafgp9fj1qkj7mqr0n1pda1v6687gh5s170glnlbw"; depends=[circular progress]; }; + PPSFS = derive2 { name="PPSFS"; version="0.1.0"; sha256="180brwqcs2qjh01a1qwdy2a8g19scn4mxzc3s6pw8gyl2r3fzxi7"; depends=[brglm2 Rcpp RcppArmadillo]; }; PPforest = derive2 { name="PPforest"; version="0.1.2"; sha256="049ywkhf7ywrfxsvsyxp10df7jx0a0pvss8nn3nbkj7mblgvbf7k"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.4"; sha256="008hlgi56p9wydpsb2f1dxi4slml7p417c34lw00hivbl53d6x97"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; PQLseq = derive2 { name="PQLseq"; version="1.2.1"; sha256="0lyynzvv7n1igzfrw52021bnxprqcm2hjxmlrsxkx4898ca46g60"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; @@ -3582,7 +3592,6 @@ in with self; { PRP = derive2 { name="PRP"; version="0.1.1"; sha256="1q4idlk2crxsd841b203hkcyp9glqhsg83liddqlxixxih7rkzp1"; depends=[mvtnorm]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; PRSPGx = derive2 { name="PRSPGx"; version="0.1.0"; sha256="068r4krx6y40w9mmjv2z04di9w3ydas3lgpwhjqlnsfq0yjk5ias"; depends=[bdsmatrix bigparallelr bigsnpr bigsparser bigstatsr gglasso GIGrvg glmnet lmtest Matrix MCMCpack mvtnorm propagate SGL]; }; - PRSim = derive2 { name="PRSim"; version="1.3-1"; sha256="1iq81vdxwd504cqjn243hs8x8ph7yvf06gj4amf7cgg1j6862d35"; depends=[goftest homtest lmomco mev splus2R wavScalogram]; }; PReMiuM = derive2 { name="PReMiuM"; version="3.2.7"; sha256="108ijvhs48i0sphqvpkxa3bwcsak7098irz5x82zja42h9bz5hwf"; depends=[BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; }; PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; @@ -3592,7 +3601,7 @@ in with self; { PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.7"; sha256="1l8pik1abfrcid8ffwp3gjl9z5iby6l5xcmv1vcg1cbd96z4rvqn"; depends=[pkgbuild rstudioapi]; }; - PSS_Health = derive2 { name="PSS.Health"; version="0.3.1"; sha256="0k5726b4hm2cnxg2qr7rdvv5n5bn2jlaxfcy3088k6vbhqz4f8df"; depends=[DT easypower EnvStats epiR ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper tidyverse writexl]; }; + PSS_Health = derive2 { name="PSS.Health"; version="0.4.0"; sha256="1vp25ga3pyj81jbxd54dmavaqdxjbib2d5sc9bc2mrbpmqspf5i6"; depends=[DT easypower EnvStats epiR ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper tidyverse writexl]; }; PSSIM = derive2 { name="PSSIM"; version="0.1.0"; sha256="144lh31b1c4ycq0wrgf9745q0c8b5sfnmrd0f7vwx95i86bzr3mj"; depends=[]; }; PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.4"; sha256="0iyhs2sas08kjl6hd0y4n4rz4lvvvlrz3w3izl3may6mscykrciy"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; @@ -3601,7 +3610,7 @@ in with self; { PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; - PTXQC = derive2 { name="PTXQC"; version="1.0.12"; sha256="0k9qvaf2dxfy2lcqnw0zyi17l682rma4c4hhh56m4bycwl2prmv2"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="1.0.13"; sha256="08sknbjlsjj77jv2kbprrgiagnrhjdiv4n33053c36a1lxba7vc3"; depends=[data_table ggdendro ggplot2 gtable htmlTable jsonlite knitr magrittr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; PUMP = derive2 { name="PUMP"; version="1.0.0"; sha256="03xy77hq9d375v2hpszbnh700lkb4yfd2xn20lwh0bawx94m7rsy"; depends=[dplyr future ggplot2 ggpubr here magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.2.0"; sha256="1ky6f4yhm3hjrfxwk8vfalzzjgkq1922my26w457q8nfng7f2m53"; depends=[Metrics minpack_lm nls2]; }; @@ -3629,7 +3638,6 @@ in with self; { PamBinaries = derive2 { name="PamBinaries"; version="1.6.0"; sha256="1vq0s1l8xz7g927x19fw0nqcpk65mjq9s50506d7ib42qhk6xdvb"; depends=[dplyr ggplot2]; }; PanCanVarSel = derive2 { name="PanCanVarSel"; version="0.0.3"; sha256="06xkzg2kvyr6ivm1z71x2pk20j37h36sx6kf4kmc8q50cq73k9jl"; depends=[Matrix msm mvtnorm smoothmest]; }; PanJen = derive2 { name="PanJen"; version="1.6"; sha256="18cl9rls98v286kk6lyxxws3w59zpzgmqi5250gdgcf71xy2lhvm"; depends=[mgcv]; }; - PandemicLP = derive2 { name="PandemicLP"; version="1.1.1"; sha256="0sfj22ssqz3zfwxvqfmx3mkvi07zyq3pgx0y8xz4qdhld8z7jfxs"; depends=[BH covid19br curl dplyr plotly Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; PanelMatch = derive2 { name="PanelMatch"; version="2.0.0"; sha256="0974f0jfigybclvbkdp5ma57fjrx8qz7dca3c09klw3xkmlfsxhb"; depends=[CBPS data_table ggplot2 igraph MASS Matrix Rcpp RcppArmadillo RcppEigen]; }; Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; @@ -3651,9 +3659,9 @@ in with self; { PeakError = derive2 { name="PeakError"; version="2021.7.1"; sha256="0rsh81p0w11zp8rgxx9cm8537gxhf9hx6xizpbflfx60xhr96is5"; depends=[]; }; PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; }; PeakSegDisk = derive2 { name="PeakSegDisk"; version="2022.2.1"; sha256="1wvsg87frdyi7q58b438n331irlgm7wnfd3rf3ca5m636xz6cnr9"; depends=[data_table]; }; - PeakSegJoint = derive2 { name="PeakSegJoint"; version="2018.10.3"; sha256="0f0dw6swhhf301j4ci3rs8cmzd39dcjlb0kqxpdh7f00gp3qn7da"; depends=[PeakError penaltyLearning]; }; + PeakSegJoint = derive2 { name="PeakSegJoint"; version="2022.4.6"; sha256="0y4vlkr5npqk0nrcv9dqy1gdk2h9z7wajiiw9ijmv1fdg5csn6bh"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; - PearsonDS = derive2 { name="PearsonDS"; version="1.2.1"; sha256="094q0vxqkm8r30rhgck3vh44qbaj00liddn23cnl7rglil5y6jrm"; depends=[]; }; + PearsonDS = derive2 { name="PearsonDS"; version="1.2.2"; sha256="1j1xpay6iqwsb2ghm5k4ba930cliyama4cq7wnjjncr4p0chcfj4"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-5"; sha256="04xi911wzkgsh1ajqamgwgv7wnpgyc20brjcr4jh6gfkfhacjprv"; depends=[]; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; PeerPerformance = derive2 { name="PeerPerformance"; version="2.2.5"; sha256="0cdv7ndbjxzaayxkrxh99jsyivlipbnipv21d4rmf8j8ssfq74r5"; depends=[lmtest sandwich]; }; @@ -3723,7 +3731,7 @@ in with self; { PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.2.4"; sha256="0nx1xqqwsxrfyzrxl3lqmd7d7ljgp6k3z3cw49xbc2z6gbizgm7g"; depends=[Rcpp]; }; PoissonMultinomial = derive2 { name="PoissonMultinomial"; version="1.0"; sha256="0h8486f5a74yik340ghg6mwb80sj38r02lzjsm0wvv07kb7zq9zp"; depends=[mvtnorm Rcpp RcppArmadillo]; }; PoissonPCA = derive2 { name="PoissonPCA"; version="1.0.3"; sha256="0hdfnq427cywkpb34nj8kdjrc3yligzqag0729qnhh90si0ad036"; depends=[]; }; - PolicyPortfolios = derive2 { name="PolicyPortfolios"; version="0.2.2"; sha256="1mfhyy4qyadk389jj6q8livfj45qdwb57wx74cg85jiqd2g19d90"; depends=[dplyr ggplot2 ineq mgcv reshape2 vegan]; }; + PolicyPortfolios = derive2 { name="PolicyPortfolios"; version="0.3"; sha256="1syycldfzwymymhai0ifli93iv3p8p6xbyk25mvln6zgb43iind1"; depends=[dplyr ggplot2 ineq mgcv reshape2 vegan]; }; PolyHaplotyper = derive2 { name="PolyHaplotyper"; version="1.0.1"; sha256="1sc1n42h78nyv004ddykvh1ljjczyiv5rl9sgxhi207lql1zd3wa"; depends=[XML]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; @@ -3751,7 +3759,7 @@ in with self; { PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; PowerTOST = derive2 { name="PowerTOST"; version="1.5-4"; sha256="0k7vbgw0jswynwrammzzlc5radszjyqw9y5h3kh22bzpq4njvl1z"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; - PracTools = derive2 { name="PracTools"; version="1.2.5"; sha256="1ysp8cwfmr9hihvb59y7gc74gw2a3bgbh57h99xp246i7d12bbhn"; depends=[]; }; + PracTools = derive2 { name="PracTools"; version="1.2.6"; sha256="0h9drhww2zc5dsp3pfmkjqgz943fx3mvfcl9vqrj2ndj20ni006k"; depends=[]; }; PracticalEquiDesign = derive2 { name="PracticalEquiDesign"; version="0.0.3"; sha256="0jms5j9vg5g1llwkzjglj6k26wgj16jxdigllra4gjzk0azbgn9q"; depends=[dplyr ggplot2 numDeriv Temporal tidyr]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; @@ -3765,7 +3773,7 @@ in with self; { PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.10"; sha256="0z4wc0ahqb5n6ikharpamcaim3g3mww0bkyblz61xaq2yzyny9jr"; depends=[]; }; PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrevMap = derive2 { name="PrevMap"; version="1.5.4"; sha256="12cw4dmbsnx9c4y5l5k0paqn1wwbxy9ciw46r254n5rd275fhksh"; depends=[lme4 Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; - PriceIndices = derive2 { name="PriceIndices"; version="0.0.6"; sha256="18ci20z07xx7q1mr007hwn2sx65fmvli9w23brgvbpa1wyhh3lhg"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; + PriceIndices = derive2 { name="PriceIndices"; version="0.0.7"; sha256="0bmzlvlvri0ryhzq40hqbv7cg883jdp0hx0xrfr94hlp1rji2ihj"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; }; PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; @@ -3786,7 +3794,7 @@ in with self; { ProcData = derive2 { name="ProcData"; version="0.3.2"; sha256="1a0rbj57rbxf5axfyd1j9j1mh7ara3rlq31lysaprwaymig94mml"; depends=[keras Rcpp]; }; ProcMod = derive2 { name="ProcMod"; version="1.0.8"; sha256="0rxh135gs9gq9sag1cmvywdgnax7n989gmffbxil71fy49kxpwdg"; depends=[foreach MASS Matrix permute Rdpack]; }; ProfessR = derive2 { name="ProfessR"; version="2.4-1"; sha256="1wsbx0dsygc1ipzhgs1pd0lhdb0qvp4ydqzwarn6zv27rzf4p3bd"; depends=[RPMG]; }; - ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; + ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.2"; sha256="18m4gk7rhfi0wd9hwmqhfa20gr260plvj41iimlqb5y9m2ld1b08"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; ProjectManagement = derive2 { name="ProjectManagement"; version="1.4.3"; sha256="017f2rp3jnss65jn9pi0fg69frp23h2z127zrxa5wap3wdw5b49i"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.2"; sha256="0r1af5h24nbgr39njchnqd54cw7cyzsw8k1qind8h5af491wmq0h"; depends=[digest tibble]; }; @@ -3815,7 +3823,6 @@ in with self; { Q2q = derive2 { name="Q2q"; version="0.1.0"; sha256="1n97axhcq64fg92cbndqw70c8awknjap91bh2h6i5cvd0c80pb85"; depends=[]; }; Q7 = derive2 { name="Q7"; version="0.1.0"; sha256="09jhqraajvlm7iiri4f7xlllkcx8q5h3sg472ishj47wg5qf2rym"; depends=[magrittr]; }; QAIG = derive2 { name="QAIG"; version="0.1.7"; sha256="04ygizvplvrzhf1p0vwj75x7k8sl0ym5zbrsvn63y983awih2p6i"; depends=[Formula stringr]; }; - QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; }; QBMS = derive2 { name="QBMS"; version="0.7.0"; sha256="14mq0l2ih6vchn7q2ssscxyrhrvfic3hnb4qyhd6sfy9a8cs8klm"; depends=[httr jsonlite]; }; QCA = derive2 { name="QCA"; version="3.15"; sha256="1rijfdslq44w8abamplhj5f0l9jq43jcklcza64rfyxqfavc8mia"; depends=[admisc shiny venn]; }; QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; @@ -3852,9 +3859,10 @@ in with self; { QTLRel = derive2 { name="QTLRel"; version="1.9"; sha256="10lydj6zgijk2dxkncp35vrvic1v2s3v1zv44w7xi1i3wb3ifksx"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="1.2"; sha256="0hp99hhlv7rijn34ncshpvbnmhbx3f5km7bzr0z7yr7l3j1vx3sc"; depends=[doParallel expm foreach MASS Rfast]; }; - QWDAP = derive2 { name="QWDAP"; version="1.1.11"; sha256="1kin58d2kaxy1zyzln95xxj8lrjir3zq9gfc2c026sq2pcaqlxkv"; depends=[CORElearn MTS pls progress StepReg]; }; + QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; QZ = derive2 { name="QZ"; version="0.2-2"; sha256="13s9yp9dz95iar2s8mhyi1sfba4wsdddpjard01665s34cvf1xw9"; depends=[Matrix]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; + Qest = derive2 { name="Qest"; version="1.0.0"; sha256="02q0j4vynk3hhfg1xfgdvp3piicc4cc1s1i1q710d06r8mmfz1cj"; depends=[matrixStats pch survival]; }; QoLMiss = derive2 { name="QoLMiss"; version="0.1.0"; sha256="00g1ykwlmc4w0bmzj0jg9ckr2bvkl8qcxd67wdc12alccqqd584v"; depends=[dplyr missMethods survival]; }; Qtools = derive2 { name="Qtools"; version="1.5.5"; sha256="0kmd5cd299gjw5qbk8yhlzxcwa3ykrr36zcpk773mykyz57q46hb"; depends=[boot glmx gtools MASS Matrix np numDeriv quantreg Rcpp RcppArmadillo]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; @@ -3913,9 +3921,9 @@ in with self; { RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; RAEN = derive2 { name="RAEN"; version="0.2"; sha256="098d990qa987hx2llqwdw2bmi5nmrlda23j1rgmw5nirllk28d30"; depends=[boot doParallel fastcmprsk foreach glmnet lars]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.29"; sha256="0g82wi0bffkkb86axsa814dbqhscs9mlgk43j3j375v9kbd4136c"; depends=[ape cluster expm gaston here htmlwidgets MASS Matrix MM4LMM optimx pbmcapply pegas Rcpp RcppEigen Rfast rrBLUP stringr]; }; - RALSA = derive2 { name="RALSA"; version="1.1.0"; sha256="01c4l18mkk59px11fcdc5hqmbm7ycsq519y89zvlbw22qnawi6l6"; depends=[data_table DT foreign Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; + RALSA = derive2 { name="RALSA"; version="1.1.5"; sha256="179klpj9birrzks42xixq0jk1mvv6yjshwhk6q7qsixhldvaaiwp"; depends=[data_table DT foreign Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; - RAMClustR = derive2 { name="RAMClustR"; version="1.2.2"; sha256="0v75dxwn1bybjw3zybvz60j01nffl0nzybw5k0a7kqhbcb7cdpqw"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr InterpretMSSpectrum jsonlite MSnbase pcaMethods preprocessCore RCurl stringi stringr webchem xml2]; }; + RAMClustR = derive2 { name="RAMClustR"; version="1.2.3"; sha256="09s8n9jih38psrdajxllni75lr56lkzyvgkadinys2dcq6f9rh4x"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr InterpretMSSpectrum jsonlite pcaMethods preprocessCore RCurl readxl stringi stringr webchem xml2]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; @@ -3924,7 +3932,6 @@ in with self; { RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; RAPTOR = derive2 { name="RAPTOR"; version="1.0.1"; sha256="1bj3xsl83mb8zwap8icywrfdld382fram79b0n14jbk1l87rj9r4"; depends=[mgcv]; }; RAQSAPI = derive2 { name="RAQSAPI"; version="2.0.3"; sha256="0y9x5s1r5qfxx93wvcpa62s486d6yrrn56ks5wfgpx18jlm39q8d"; depends=[dplyr glue httr jsonlite lifecycle lubridate magrittr purrr rlang stringr tibble]; }; - RAT = derive2 { name="RAT"; version="0.1.1"; sha256="02cd7lp9dzabmb1ll59xflyhlhhfnzhbdwcn68vrdjmxyppw6crl"; depends=[ggplot2 mapproj wosr]; }; RATest = derive2 { name="RATest"; version="0.1.9"; sha256="02673wbss90c192rxbzxfsbnirl63k7d8fq989chmjc5z2xjzajj"; depends=[ggplot2 gridExtra quantreg]; }; RAdwords = derive2 { name="RAdwords"; version="0.1.18"; sha256="1c3m2j2cf1s51p783rdng5ns913bv7rbjc1vpmrmsxg2kf5f6qyq"; depends=[RCurl rjson]; }; RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.6"; sha256="15j6vb6rm4ykwjachqyyfvjshiilyjqnpj8x6qc93savk04rf279"; depends=[]; }; @@ -3935,7 +3942,7 @@ in with self; { RBMRB = derive2 { name="RBMRB"; version="2.1.7"; sha256="09x7zaigflc0d3pbdrvfv1kdklrlzgd4v2ma3dcr96l36n1iqqns"; depends=[data_table ggplot2 httr plotly rjson]; }; RBNZ = derive2 { name="RBNZ"; version="1.1.0"; sha256="11fdnc2pmw5nq3lswid078l307ln6853a3b9d383msvrkz6yms26"; depends=[httr lubridate readxl rvest xml2]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBaseX = derive2 { name="RBaseX"; version="1.0.0"; sha256="0nj9sc14bc0m0xkdqnc3h7frcn4y0wbdpr6wnd8kvnipcrr3jcrl"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; + RBaseX = derive2 { name="RBaseX"; version="1.1.1"; sha256="03p0c89pcx3inxa4qlyhvf3hm48rfp5j46b0qkszm96yf3g2b01m"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; RBesT = derive2 { name="RBesT"; version="1.6-3"; sha256="0nbqkxsi6di4sd26l9c212sjs2lsvnabwbnf0cx00hmxrxzy0lhl"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; @@ -3944,11 +3951,11 @@ in with self; { RCALI = derive2 { name="RCALI"; version="0.3.1"; sha256="0hc7h55qi8bpmp9rfh1wgxqs28kbs4yqxch2jlgl42vk5383askq"; depends=[splancs]; }; RCBR = derive2 { name="RCBR"; version="0.5.9"; sha256="1nxaf485jfg1kr80bxwczf27xz5ab7yz61c5l3bg9192jdf432ql"; depends=[Formula Matrix mvtnorm orthopolynom REBayes Rmosek]; }; RCCPCA = derive2 { name="RCCPCA"; version="0.1.0"; sha256="0nix6d8cxi64qfnsk00rpzq9kf07a5skc8zkvywl2y2aw6wrlvnd"; depends=[]; }; - RCDT = derive2 { name="RCDT"; version="1.0.0"; sha256="1l72dbgxkkhv4v8mjrz1zsq3jhvan4krgkjbjyd9hd5faj7hhrcy"; depends=[gplots randomcoloR Rcpp RcppArmadillo]; }; + RCDT = derive2 { name="RCDT"; version="1.1.0"; sha256="1mi8asqvna3aw6ndpg73kb70h5pfn9yrj9al1ydz0p32x8qm3rfh"; depends=[gplots randomcoloR Rcpp RcppArmadillo rgl Rvcg]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCGLS = derive2 { name="RCGLS"; version="1.0.3"; sha256="12mmfs91fmhdxdxr7q16hnjlg7bz2bbkf8chld4cyf8clnflzvsj"; depends=[ncdf4 raster RCurl sp]; }; RCLabels = derive2 { name="RCLabels"; version="0.1.1"; sha256="1nvjq40labgrrn3lbyvnk9zir0ghgxkqrniddp4w7wffsfz4dj00"; depends=[assertthat Hmisc magrittr purrr]; }; - RCMinification = derive2 { name="RCMinification"; version="1.0"; sha256="1n8rb5lz0bansggma8gs45xbmmzh98xcsg1vcwwviv2zgq8ww7jf"; depends=[]; }; + RCMinification = derive2 { name="RCMinification"; version="1.1"; sha256="1lk5n24shq8avg7a088x0l70g1xa9wf3kpyh7qq65np6rh1gnsga"; depends=[]; }; RCPA3 = derive2 { name="RCPA3"; version="1.1.1"; sha256="0zq700g7gwnf3rw0zd4m4h0rhp10d4ar5fdxwzbkn708c2m4znxg"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; RCPmod = derive2 { name="RCPmod"; version="2.190"; sha256="1r24g8fcizyqzgp0da90sxpwalgcsgz2b168j2smpylxraiqb037"; depends=[fishMod glmnet gtools MASS]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; @@ -3962,8 +3969,8 @@ in with self; { RClickhouse = derive2 { name="RClickhouse"; version="0.6.3"; sha256="1xvx098amys1816lkb1gdz5wz5lp58dw9bp9f4dlgbzjdl027ns5"; depends=[bit64 DBI dbplyr dplyr Rcpp]; }; RClimacell = derive2 { name="RClimacell"; version="0.1.4"; sha256="03w2psiix74d2cbaz06bk77pclc6lfjhfdi057rdmw4nv3xv1fqi"; depends=[assertthat dplyr httr lubridate magrittr rlang stringr tibble tidyr tidyselect]; }; RColetum = derive2 { name="RColetum"; version="0.2.1"; sha256="1hgk9p234m3w49sw2j2rg8c14z3gz1mabvb69b1bxrg7f1mz9slg"; depends=[dplyr httr jsonlite]; }; - RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; - RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; + RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-3"; sha256="1h0s0f4vvlk40cagp3qwhd0layzkjcnqkiwjyhwqns257i1gahjg"; depends=[]; }; + RConics = derive2 { name="RConics"; version="1.1.1"; sha256="0r5sn5kx6r3pjnvrgz7yxpyznb1js2i58vnbsqyzpl7jhcdhpz5x"; depends=[]; }; RCreliability = derive2 { name="RCreliability"; version="0.1.0"; sha256="083n6ix9yjnv4aafp11qac891gdhk62mhxmwkx9z3i0sxddwdb6r"; depends=[mgcv sandwich]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.6"; sha256="18nif4phr5vfhri07mnchiym0qfm31ak9nxvb2v9ac84mij6idbc"; depends=[bitops]; }; @@ -3971,7 +3978,7 @@ in with self; { RCzechia = derive2 { name="RCzechia"; version="1.9.1"; sha256="1xwzbbap6h02z7jpzrgh0lmrzxssdjh0gr8fk0ivnl8zgfqrfk86"; depends=[curl httr jsonlite magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; - RDP = derive2 { name="RDP"; version="0.2.0"; sha256="045jkjzhwsbml95l3spwd2f187pl1rgkaig74v3z97f75mg6ga3d"; depends=[Rcpp]; }; + RDP = derive2 { name="RDP"; version="0.2.3"; sha256="0fmssv33lxfxk61609dd7865n9w7i6wlap9g5aaa2b0319sbclpd"; depends=[Rcpp]; }; RDS = derive2 { name="RDS"; version="0.9-3"; sha256="0kcq5ym6l80shzxf9zv2rwb84r0q9qr2cwimcg76r97sfx7c2kp2"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales statnet_common]; }; RDSTK = derive2 { name="RDSTK"; version="1.1"; sha256="07vfhsyah8vpvgfxfnmp5py1pxf4vvfzy8jk7zp1x2gl6dz2g7hq"; depends=[plyr RCurl rjson]; }; RDStreeboot = derive2 { name="RDStreeboot"; version="1.0"; sha256="10ry8rna450j389cplvyvgwljxa8lli7licwdin64b1kyzy2cdn7"; depends=[]; }; @@ -3981,7 +3988,7 @@ in with self; { RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; }; RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; REAT = derive2 { name="REAT"; version="3.0.3"; sha256="1bnmk74xdxckni6alp5kslsb3w7jlnfwc27mi5y3lry7zrvxi6lk"; depends=[]; }; - REBayes = derive2 { name="REBayes"; version="2.50"; sha256="0npwm81fdzfj190s8shaxb9dwsg796jh5p59jr84876s7z4d8w0k"; depends=[lattice Matrix reliaR]; }; + REBayes = derive2 { name="REBayes"; version="2.51"; sha256="0vsi7bwzg7aarjmywi1xhk7ckiyvp2kyyh97jh9i1a8045sg3p18"; depends=[lattice Matrix]; }; RECA = derive2 { name="RECA"; version="1.7"; sha256="1xikj20flqajpkw4wyynmqd1pafbylzwfrmc8bz9pqgggjjhrqql"; depends=[]; }; REDCapExporter = derive2 { name="REDCapExporter"; version="0.2.2"; sha256="0w7c1y58vnkbd11ndkcn5s5c54pmvyqhflwgg2q6dc3n671yp9wx"; depends=[curl data_table keyring lubridate]; }; REDCapR = derive2 { name="REDCapR"; version="1.0.0"; sha256="1x1nrwrlv2xh0p13asj1hxm8jpc623mjf2m3lybj6466jm2qh33m"; depends=[checkmate dplyr httr magrittr readr rlang tibble tidyr]; }; @@ -3995,11 +4002,9 @@ in with self; { REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; - REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; REddyProc = derive2 { name="REddyProc"; version="1.3.2"; sha256="1irclh991wp1ns2wb9dd88kqd5vg1kd8vk83a7w0kjpf20yqnkvp"; depends=[bigleaf dplyr magrittr purrr Rcpp readr rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; REndo = derive2 { name="REndo"; version="2.4.3"; sha256="1h7ycxwklb9dbb8q0g9cagjl93jhbjc86l25s1imdp1rqfsv8i6c"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; - RFCCA = derive2 { name="RFCCA"; version="1.0.7"; sha256="0v0himz0zz6f52vvc5h33qiij0101zgihzwak8cw5193xzsfmr4g"; depends=[CCA PMA]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; @@ -4010,6 +4015,7 @@ in with self; { RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.5"; sha256="1ri62dfgwsbgrvjx7qn4mbv1p0mk2ynkrnw9s1klv31p2431rli5"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; + RGAN = derive2 { name="RGAN"; version="0.1.1"; sha256="0820fvmiw853hfls7mydca9lhwxrrkj49vshp151by9mavwkx413"; depends=[cli torch viridis]; }; RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; @@ -4048,10 +4054,10 @@ in with self; { RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RImpact = derive2 { name="RImpact"; version="1.0"; sha256="010bdq6r2fv4rs78kl1ixnw1di39v90ckh8bblzi0wv4adlbaza4"; depends=[]; }; RInSp = derive2 { name="RInSp"; version="1.2.4"; sha256="1rfikmrz1y7sx9qwsqh5ifqryf6218n9dbhfmk2w2vl2pdgw4xyr"; depends=[]; }; - RInside = derive2 { name="RInside"; version="0.2.16"; sha256="03iabanmj5xkgq7r1n1rkmzjf2zz484637nmd1qg61ga53hsvr3s"; depends=[Rcpp]; }; + RInside = derive2 { name="RInside"; version="0.2.17"; sha256="0j23h8qxqn95d0hqx9wcb52hc8w9qacjnk96lxlsdjrlxr28rqhb"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-18"; sha256="0a591xm1nxrlhx3r6yss0ii0rv5gd6nfv4yzbmfzxjjaw3c8aiki"; depends=[abind SparseM survival svd xtable]; }; - RJDBC = derive2 { name="RJDBC"; version="0.2-8"; sha256="1qfq1vjlxhg3hmb1169zkss7kng74jhjninqkfr3cca8x1fq9593"; depends=[DBI rJava]; }; - RJDemetra = derive2 { name="RJDemetra"; version="0.1.9"; sha256="0av3yqibyipxvch5p2zv9r82pvpvl406nxd5pkm4pnbjndw09j3s"; depends=[rJava]; }; + RJDBC = derive2 { name="RJDBC"; version="0.2-10"; sha256="06b2gw76jwmm3lw3knmn6slc6824d4gzry94n96d97ii4fm4gwrp"; depends=[DBI rJava]; }; + RJDemetra = derive2 { name="RJDemetra"; version="0.2.0"; sha256="1l97zicd0n3kvyjcrfq09wc8wawnfrs59n5nrx6s2dzh3cvyxvxr"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3"; sha256="02lbg82g4abng5vcn2g8ghvmg69q35my8smnbvd09yvha8hb49ps"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.6"; sha256="17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; @@ -4066,7 +4072,7 @@ in with self; { RKUM = derive2 { name="RKUM"; version="0.1.1"; sha256="1w0v6l61dm7xixnyywsc7xziixz7k9r1ja26zcy77nry5kn6v60q"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; RKorAPClient = derive2 { name="RKorAPClient"; version="0.7.2"; sha256="0rgk3bpxpdxqjgkbp75cfyykkzgz9fl8mfz504ng0j3mpj0mzaig"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; - RLRsim = derive2 { name="RLRsim"; version="3.1-6"; sha256="1wkkibr250frsbfq70m9jdrylxb492zibf5w03z6zis98pjffssp"; depends=[lme4 mgcv nlme Rcpp]; }; + RLRsim = derive2 { name="RLRsim"; version="3.1-8"; sha256="06i4slc7fj8xifq20i1vqfadfw2p81b0kfzga60139hnryz1zpva"; depends=[lme4 mgcv nlme Rcpp]; }; RLT = derive2 { name="RLT"; version="3.2.4"; sha256="1vycsi213pcy5x9qpvim0nbsx4sk2125bficssv9v154w2xrgvf8"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; @@ -4089,7 +4095,7 @@ in with self; { RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; RMVL = derive2 { name="RMVL"; version="0.0.4.4"; sha256="01w649iw62kpyp4a3lyrqcfb8iqcd0v8zwz6aq1cnxhw04hz0c1w"; depends=[]; }; - RMaCzek = derive2 { name="RMaCzek"; version="1.3.5"; sha256="19hb25rl4fmyyaklj0jlvdh41zg9k2d6hkmm4ixvh8y9dbp675c8"; depends=[GA seriation]; }; + RMaCzek = derive2 { name="RMaCzek"; version="1.4"; sha256="0qyragblpsc5pw9j0n4563i29fgi7jmv696lk2dp8ms6sba6ns6y"; depends=[GA seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; RMariaDB = derive2 { name="RMariaDB"; version="1.2.1"; sha256="032zrwqf2w1cfkm0ryblc4sms2y5cl0fzyp0ijlk7kjld04nl5y9"; depends=[bit64 blob DBI hms lubridate plogr Rcpp rlang]; }; RMark = derive2 { name="RMark"; version="2.2.7"; sha256="0qxa383cagzqrnfc3izybb4lrg8z1r3nw1j5b7h4wkjwy0k3kczb"; depends=[coda matrixcalc msm]; }; @@ -4100,8 +4106,8 @@ in with self; { RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.4"; sha256="1rhdmiap7xm96igclas67dz8naywjkddydbk9m3hp0d0zhgblc5i"; depends=[ggplot2 plotly scales]; }; RMySQL = derive2 { name="RMySQL"; version="0.10.23"; sha256="05aavyggyjv46awa7ggbxlfcy9707vak5kh7kj0ljdx8zga7xb7l"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; + RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.1"; sha256="1w867y34mxqwnl5svb1i2f07grprvpqijgjf964p2n9l952qsv3p"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.7.0"; sha256="13biayrgs9qb06w3rkwrmplnrm93zlygsfm7chy6jbp15xl3bf0c"; depends=[circlize RRNA]; }; - RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; RNCEP = derive2 { name="RNCEP"; version="1.0.10"; sha256="19ja7pcp7ajwhqhqw92pdmvxzyjc4kw3943pllpx47s1zvi6dmci"; depends=[abind fields maps RColorBrewer sp tgp]; }; RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; @@ -4191,7 +4197,7 @@ in with self; { RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="1.2.1"; sha256="0pzm0i250pscgj403s5yfbxn9hyh0kmsrkljf55aa3smycic4hqa"; depends=[ape ggplot2 Matrix]; }; + RRPP = derive2 { name="RRPP"; version="1.2.3"; sha256="0k2nxbq133hyw9ik6ny9q3rxxpi26qj02phs8zfx8sadz6567vkf"; depends=[ape ggplot2 Matrix]; }; RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; @@ -4206,15 +4212,15 @@ in with self; { RSC = derive2 { name="RSC"; version="2.0.1"; sha256="0qb4sm6mrrphb5986jvgzw7lr9fchhm4r09a3dw9nlxzql5gn4zg"; depends=[doParallel foreach Matrix]; }; RSCAT = derive2 { name="RSCAT"; version="1.1.3"; sha256="08p4gywh1g13mwcmvp046ybz410jyrzi505rdqr8yirjpk59bw1p"; depends=[ggplot2 gridExtra Metrics rJava shiny shinycssloaders shinyjs]; }; RSDA = derive2 { name="RSDA"; version="3.0.9"; sha256="12ychaaa1n5gam93f5kpxsvsfc9x07znzzz9nrx8bsvgmq4znqf9"; depends=[dplyr e1071 FactoMineR forcats gbm ggplot2 ggpolypath glmnet kknn labelled magrittr neuralnet nloptr princurve purrr randomcoloR randomForest reshape RJSONIO rlang rpart scales sqldf stringr tibble tidyselect vctrs XML]; }; + RSDK = derive2 { name="RSDK"; version="1.0.1"; sha256="1qsidmcb432aliwvcn3y14w538nnac1xp50z7a4vh68kqidwhrxp"; depends=[keys shiny shinyWidgets testthat]; }; RSE = derive2 { name="RSE"; version="1.3"; sha256="1dvmj1zwkbp1dj9r8kcvbd8rpknfwfdqaqc5gfl82bh823w72099"; depends=[]; }; RSEIS = derive2 { name="RSEIS"; version="4.0-3"; sha256="1kw28k6j7isl46wv1ysbkkccsdx1r55mgj1d6jylw9hpbn1pm7hh"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.2.2"; sha256="16s9iahbcdqykavm5cq8n76hlpfqlljl17xwh0vrz5ac7z4z3rdz"; depends=[MCMCpack]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-14"; sha256="081c20dcac8xxb0sp7kwzm4b7h5jrgcxxsfckjbxbda95g5n4qkz"; depends=[Rcpp]; }; - RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; RSQL = derive2 { name="RSQL"; version="0.1.4"; sha256="0zda6cgsx1bd3xw2r9flsphbkrgma95qqv5vz70f234y9gkmc6v3"; depends=[DBI knitr lgr R6 RSQLite]; }; - RSQLite = derive2 { name="RSQLite"; version="2.2.10"; sha256="1a00i24g4d4gvp7qmivpyfm24yfz4w4wsy2kplgfz0i0j0rzzbh6"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQLite = derive2 { name="RSQLite"; version="2.2.12"; sha256="12ka9cp591sc3hn5r6z4skbjzm3nfq338wlpjdmw6rz26mmr2c9s"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.5"; sha256="1h94dhs5yl1i7n153rbmj883iz3hql0b0cr12357nk4nvf36yih8"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; @@ -4245,7 +4251,7 @@ in with self; { RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; - RTIGER = derive2 { name="RTIGER"; version="0.99.0"; sha256="0g1qccjslf90lsc965klnkdkij16frfk3ig6yjpldh8j2yv66zg3"; depends=[e1071 GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; + RTIGER = derive2 { name="RTIGER"; version="1.99.0"; sha256="018y0hs06cpmb2k74xdj0cnlzr9aljbizj5jf9h8frpn9p57d6rv"; depends=[e1071 GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; RTL = derive2 { name="RTL"; version="1.0.0"; sha256="19v9npbnr0hp6gk9minil53imjvhqhzzvq3fg3xlg2kdf0d4s87d"; depends=[cli dplyr fabletools feasts ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr RCurl readr rlang stringr tibble tidyquant tidyr timetk tsibble withr xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; @@ -4260,7 +4266,7 @@ in with self; { RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-81-2"; sha256="137374nikk2jji1fnx1vnsj1v6n3s9kbif5rcvla0kbg3xn6ndps"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; RVCompare = derive2 { name="RVCompare"; version="0.1.5"; sha256="17ralm3xbzgi1ngblwf6pmpaz7c5vwkfinnpwyxvlrwi8mxi554h"; depends=[ggplot2 pracma Rcpp]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; - RVIpkg = derive2 { name="RVIpkg"; version="0.2.8"; sha256="0hh3kqzfwbp0qc1v5baixnl3px54dwvljd1r23s8lxlg434pl7fz"; depends=[]; }; + RVIpkg = derive2 { name="RVIpkg"; version="0.3.0"; sha256="0z045zky4zmv3b46i90x8ww8kgbsz26v5waa08scm5hkpn25hb8k"; depends=[]; }; RVenn = derive2 { name="RVenn"; version="1.1.0"; sha256="016m00xv59lkwm2is32v5nr4lw5a1ymdnz34r3ffflcv9bfrc6n4"; depends=[ggforce ggplot2 magrittr pheatmap purrr rlang vegan]; }; RVerbalExpressions = derive2 { name="RVerbalExpressions"; version="0.1.0"; sha256="1p9wmpgqwnz95sr8km8y6kqax8fcz6sqg54wfdx44kiqkf1ybdsp"; depends=[magrittr]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; @@ -4278,7 +4284,7 @@ in with self; { RWsearch = derive2 { name="RWsearch"; version="5.0.5"; sha256="161fnkl0dzk11wvzj7vz4807pjq33gvnhniw8ms2ipz0vmd0pk7c"; depends=[brew latexpdf networkD3 sig sos XML]; }; RXKCD = derive2 { name="RXKCD"; version="1.9.2"; sha256="1yk12ic6kdbwc44ppag2yfnga7xjmifkglhvcw93vc3qg469mm15"; depends=[jpeg plyr png RJSONIO]; }; RXMCDA = derive2 { name="RXMCDA"; version="1.5.5"; sha256="1ci73q8xf3xxqw8b7sk83v5vz2cqgcb4lkx7qi3hd1ff4xkz1fpa"; depends=[kappalab XML]; }; - RXshrink = derive2 { name="RXshrink"; version="2.0"; sha256="105laxdjnqpkp74675asihcry6ahaihphkbnpxyi6xpskga0k1ka"; depends=[ellipse lars]; }; + RXshrink = derive2 { name="RXshrink"; version="2.1"; sha256="1qqwmqi39m8pmxghgsnc8x9s2zks97mryzwx9ynd08mcxi3xinvd"; depends=[ellipse lars]; }; RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; @@ -4294,7 +4300,7 @@ in with self; { RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadialVisGadgets = derive2 { name="RadialVisGadgets"; version="0.2.0"; sha256="18a2c89jpdaln9cl5y4w161121fld08wm57m40qacsj1vlnkh6j9"; depends=[caret dplyr ggplot2 miniUI r_import rlang shiny shinyjs shinyscreenshot tidyr]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; - Radviz = derive2 { name="Radviz"; version="0.9.2"; sha256="1k4bykrs6932n2iz2nngbs2k45ra7nq3rpxw4acpvxwxfciiq3ia"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; + Radviz = derive2 { name="Radviz"; version="0.9.3"; sha256="0ayrkax1g7x9jvkl8lni08ydm1lhcwpcbvy1xj9zk3bpd5zpll86"; depends=[dplyr ggplot2 hexbin igraph pracma Rcpp RcppArmadillo rlang]; }; RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; }; Rage = derive2 { name="Rage"; version="1.2.0"; sha256="10fywfr5iz1cqig7yq9w43kpicbvyl8s1q7zszb1dzsv1gr2y02n"; depends=[DiagrammeR MASS popdemo Rcompadre]; }; RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="0.1.0"; sha256="16yrr2bl62m1nr81nzvmdq7s78f7fg50dah5dg5q4j4j7z8qfsqz"; depends=[]; }; @@ -4306,7 +4312,7 @@ in with self; { RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.1.0"; sha256="17aa29ll1wminzpdl2lq6m1pc6wcdj5ap1sp5rd516j4xlpn0wpl"; depends=[]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.3"; sha256="0hlyyddafz4ik9m7bknhz6ghnqgli1f7gf6zyhlf94wh0775s9g1"; depends=[]; }; RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; @@ -4343,7 +4349,7 @@ in with self; { RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; RchivalTag = derive2 { name="RchivalTag"; version="0.1.2"; sha256="0285n5mxs643546qhyqkccaq1fkn1hxagrhj2abahskfl53i9rsw"; depends=[dygraphs mapdata maps maptools ncdf4 oceanmap PBSmapping plyr pracma raster readr rgeos sp xts]; }; - Rchoice = derive2 { name="Rchoice"; version="0.3-3"; sha256="09fssba9wi290i9nd0vxbhz29bgm7rj4aanvxkma2pdk6impcvfq"; depends=[Formula maxLik memisc miscTools msm numDeriv plm plotrix sandwich]; }; + Rchoice = derive2 { name="Rchoice"; version="0.3-4"; sha256="1995a26zlkgknb9vdh7rsk3ichr948hh9gvhmcfxwb9v9anw2ng8"; depends=[Formula maxLik memisc miscTools msm numDeriv plm plotrix sandwich]; }; RclusTool = derive2 { name="RclusTool"; version="0.91.3"; sha256="0f6v2p6dg3fq3vzys6hgwmmgyrxfj2kb4wpbywd7f9p5yd9cfd88"; depends=[class cluster conclust corrplot e1071 factoextra FactoMineR ggplot2 jpeg MASS mclust mda mmand nnet png randomForest reshape sp stringi stringr tcltk2 tkrplot]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.7-2"; sha256="16sx43887zb30j1c8f4xlf4jy5ij8v5kfr3mlsymj99v0i3dq4fs"; depends=[abind car effects lme4 RcmdrMisc relimp tcltk2]; }; RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.7-2"; sha256="0r5vrnpd6zs2a2cnab15k6143kdwizaivb3dznjb59kv2aawg3w3"; depends=[abind car colorspace e1071 foreign haven Hmisc lattice MASS nortest readstata13 readxl sandwich]; }; @@ -4391,18 +4397,18 @@ in with self; { Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcompadre = derive2 { name="Rcompadre"; version="1.1.0"; sha256="025r6dq5qs3ri5nkg4mr76jzps2p9y56i8514m97amq8lzrxl8h4"; depends=[popdemo tibble]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-5"; sha256="10z5akab66d8a3rcs5dbqq1w59hhyn52mq8vpjhcxpzqqc3c7442"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="1.0.8"; sha256="1vkqyqly6lzr1h3szaihmayvpjkzscxp4y258vnw8nh4pjb957w7"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="1.0.8.3"; sha256="1gzqfn1xjawzig30ama3rldykqpcn6bd8sg684mrfvpmv96bi9cx"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0.1"; sha256="0vw41plcl7hbi0af3la0sb4x8zqnhxjpjslx8r8cllfamy9dixki"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.8"; sha256="19814v7gi01dqjm7lrrhw4c5ww69zj20qfli4530qzsq7v6rapzp"; depends=[Rcpp]; }; - RcppAlgos = derive2 { name="RcppAlgos"; version="2.4.3"; sha256="1vclvkd9gikx9n7cvgbf8j9sahmy0wfrgzb1hcpsdj8l6ymjc91k"; depends=[gmp Rcpp RcppThread]; }; + RcppAlgos = derive2 { name="RcppAlgos"; version="2.5.3"; sha256="1ndibdf3k02bpcgackzviczramzkay9idn071nix3dhs5miq1ai8"; depends=[cpp11 gmp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.19"; sha256="12k8ny981dmky5js8yl6bih5r5mq3w43f2f9admhkwqn0n80kcl9"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.10.8.1.0"; sha256="1x7mk85rc4pmn17nm63k6rbkarsmghjapznias268545nfpib97g"; depends=[Rcpp]; }; - RcppBDT = derive2 { name="RcppBDT"; version="0.2.4"; sha256="11xq2lz4n4gyqk4pz8c3zr5ll8jlh1qlbf9rbqd3q6s3qzphpybd"; depends=[BH Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.11.0.0.0"; sha256="13blvrlbw8194a96v38hnllnwvyhdw5x9m0dnkyw3xsi3jrhcxin"; depends=[Rcpp]; }; + RcppBDT = derive2 { name="RcppBDT"; version="0.2.5"; sha256="1yx6rlidcz5yygzk1kvc5b5vclvdkv96v1y3nghj1523nnapbyxy"; depends=[BH Rcpp]; }; RcppBigIntAlgos = derive2 { name="RcppBigIntAlgos"; version="1.0.1"; sha256="157a14kqcf0q3z01mn4w1194k2l39dd4qmqs0i115p8bvkjc6ncd"; depends=[gmp Rcpp RcppThread]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.10"; sha256="0jj4w8141xl3yvr4ss8c48kiib5d0rsj7f6csn3hq9viqy71hy1s"; depends=[Rcpp]; }; - RcppCGAL = derive2 { name="RcppCGAL"; version="5.3.1.1"; sha256="0pxfvcpizvqlixz8547m7wf7haza5ca9bslvg8wwwmnpwrifz4fy"; depends=[Rcpp]; }; - RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.5.1"; sha256="0ly5snza8jryrmnlk3bi8br5mcc4nhnk35r6y2drschzbi60fybk"; depends=[fs Rcpp]; }; + RcppCGAL = derive2 { name="RcppCGAL"; version="5.4.1"; sha256="1ymnamvnhbx0nbqrlrk8f57py3ccdhirydn1ilvsn6yf1z9bs3sm"; depends=[Rcpp]; }; + RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.11"; sha256="0m9g37hrx33mmxhhzi6qakgiqh6w0c2s624fkgbny9vcabr3dfsx"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.5.2"; sha256="0z6xnvd297iklg487s9ymm7pdz7b12bmsmmmvz7r7zj80h4mdfky"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.1.0"; sha256="0ckyl88b81l58dkk0s40mcanjqaibi106q6jsrak79as93g1dbh1"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack roptim tlrmvnmvt]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; @@ -4419,7 +4425,7 @@ in with self; { RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; RcppFastFloat = derive2 { name="RcppFastFloat"; version="0.0.3"; sha256="1926hz4q6qqvz8zpabgvk04a18cm1xaqcf30yjgcrslgaf8l8h0n"; depends=[Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.10"; sha256="0lalz51q31qqy0cr227vc3msi0h47p111lzy4zs93drgl1yhh4l6"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.11"; sha256="1a5dms0axlzgpv1z2bhfrb77497h0ch1yslq0gidj14vr4kfm57h"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.3"; sha256="1qcnn482h9b8aw798frnkza4bzzpihp0pf4s1mj6zmn2ar01hsl0"; depends=[Rcpp]; }; RcppGreedySetCover = derive2 { name="RcppGreedySetCover"; version="0.1.0"; sha256="1v84i9gsmvpkmgd4niqnzp58nhrgn2j4rggsrnlh391ikdfrl51x"; depends=[BH data_table Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.2.2"; sha256="0scdzmns1yw2gbarblzd6cbvndlysz54ff17qijiz17ql5cyzly6"; depends=[Rcpp RcppArmadillo]; }; @@ -4437,11 +4443,11 @@ in with self; { RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.6"; sha256="1svpzx4h9baipqnx2793vkjh1lnr92y82whpryqzzm4i7b6zx27i"; depends=[Rcpp RcppArmadillo]; }; RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.7"; sha256="0ajbm7qy3fqlaadpzfhzsaczszlw6l5p31mmr1xd2cb31wszpg9r"; depends=[Rcpp]; }; - RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.7"; sha256="13cn8dm68mhpgimgvk2ybsccs3qjg8c975zdjr8h86vfwyjj4gnv"; depends=[Rcpp]; }; + RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.8"; sha256="1z5fg1i9splph4nfxnra07yjgss9g6g5rcsz492aa0zd8xi7z3za"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.7"; sha256="0h8517ipwqhqkhcfiyqmvsb585g01p0ra0azbpzyxip6pq6g029g"; depends=[Rcpp]; }; - RcppThread = derive2 { name="RcppThread"; version="2.1.1"; sha256="14i3bphg4gkw1hsd5d2w3sjys6da8ac7lbd470v4m98v4d3d0hcd"; depends=[]; }; + RcppThread = derive2 { name="RcppThread"; version="2.1.3"; sha256="0iprpidf7q1wlrgr9dwiikb6apqk80pyjcyni56k64nl7lrkszhj"; depends=[]; }; RcppUUID = derive2 { name="RcppUUID"; version="1.1.1"; sha256="0sxdj5ay90i1bs3wizij31n21ym8l0q0c79959arp1gd303sd8b8"; depends=[BH Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.1"; sha256="0jh64c46gp99d2nsih14vx34pamc8i7gkmiy2nj94rx3sxq62yh5"; depends=[Rcpp]; }; RcppXsimd = derive2 { name="RcppXsimd"; version="7.1.6"; sha256="1iwiz4964dw015cbxcanks8xkjan39hfzf8x6bhvf6dqqwkc4bh7"; depends=[Rcpp]; }; @@ -4459,7 +4465,7 @@ in with self; { Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.0.9"; sha256="1fb5daizc615g58yai6p4lqczwi8kq6fyyifnyn8izxjdpqh0ivm"; depends=[CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; Rdistance = derive2 { name="Rdistance"; version="2.1.3"; sha256="03wh6y9h5jgfc6xdncpgyz0v7lqavikp3pf5wwfmm2rqfj7yjr8c"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="2.1.4"; sha256="0r242a352wa7kha0n62ng6ri0qi14hwjknnyjvfcd7mx4qvfwhgv"; depends=[rbibutils]; }; + Rdpack = derive2 { name="Rdpack"; version="2.3"; sha256="1igpa4hnpiykbdnq57mglby5jsbind6izkkfy81wx4ib6nw1lpn4"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.1"; sha256="0x5dcgl25i6j2pg6d69rinal0yi8w0jwlfg05bnk9bg9v7i7db67"; depends=[]; }; @@ -4514,18 +4520,17 @@ in with self; { ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-5"; sha256="1vg5fkjfwkganxf0ji70pkp071841hjgr5sjxlaky8mx7n0cy80x"; depends=[MASS Matrix pbapply]; }; RespirAnalyzer = derive2 { name="RespirAnalyzer"; version="1.0.1"; sha256="0zdgbim5496fpfxi4cgn4fbl70grclii2naizaiabm4cz350hf6y"; depends=[pracma Rcpp signal]; }; - RestRserve = derive2 { name="RestRserve"; version="0.4.1"; sha256="1486hrzj5q5w4nbrsbqlv7vv20ly01y90qc2vygl5syzwvyjd422"; depends=[checkmate jsonlite mime R6 Rcpp Rserve uuid]; }; + RestRserve = derive2 { name="RestRserve"; version="1.0.0"; sha256="0qb1x13n2sm0lg52x3289jsln3gw9rawfs1z2372pvr9ydpjsfqb"; depends=[checkmate jsonlite mime R6 Rcpp Rserve uuid]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; - RevGadgets = derive2 { name="RevGadgets"; version="1.0.0"; sha256="0k17flvax4cq9cvl3fsyv5ya0bndikxbzdmk87v5xz3czf31kk81"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape tibble tidyr tidytree treeio]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.7"; sha256="133q3jiydf4n2frx4zmapbqgvz1f5bn1wkgsnfaaffxpz5962kxk"; depends=[bigrquery config dashboardthemes DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr pkgload purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; - Revticulate = derive2 { name="Revticulate"; version="0.3.0"; sha256="0f20kn5nwh7kzq4f91cfwpx0gmxxwyg9rfw4inswnnkcqr7gg6z2"; depends=[ape comprehenr knitr phytools stringi stringr]; }; + Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; RfEmpImp = derive2 { name="RfEmpImp"; version="2.1.5"; sha256="1bvjk71rfhpbj2j7raibsb0y3skbv1qba7yl2g00npnkk2zk14xj"; depends=[mice ranger]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; Rfast = derive2 { name="Rfast"; version="2.0.6"; sha256="0zxykq021h57mq0n6giqbx8ncjsdly0arhmaj3fcp3yfcxf4ns9l"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; - Rfast2 = derive2 { name="Rfast2"; version="0.1.1"; sha256="1sqd5614gw1ag7wjidjv8bxf3qz8lkz7m9gangihgrlf0bm4944h"; depends=[RANN Rcpp RcppArmadillo Rfast]; }; + Rfast2 = derive2 { name="Rfast2"; version="0.1.3"; sha256="1bqaazgna9vradgs8naqnyv5y1q4fq67hm18k22bcb5vycci3m5k"; depends=[RANN Rcpp RcppArmadillo Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.2"; sha256="1b3pza2xdpifvrcqbdp5r2wy82ws1844bnpna01hqj65xbw2iix8"; depends=[]; }; - Rfmtool = derive2 { name="Rfmtool"; version="4.1.4"; sha256="0vli7n957vrxs47nq5h4aqd9nwq7alj47q91zqc009rfx7wgx2k5"; depends=[]; }; + Rfmtool = derive2 { name="Rfmtool"; version="4.1.8"; sha256="1p4b9wgcdvlhfcf1rq15wcx2qjn2hgqp6gv7wx40dziqa8csrlpk"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; Rforestry = derive2 { name="Rforestry"; version="0.9.0.95"; sha256="0m6znm0yir0vlbp4vc517pxvbb81xg85cpgc9b12k5ay65lrzxq5"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0"; sha256="0cwc069f7rhkxkr5kn0n43mdy8m47gh0q6d5ijwzkhncrijb10cy"; depends=[gmp]; }; @@ -4546,14 +4551,14 @@ in with self; { Rirt = derive2 { name="Rirt"; version="0.0.2"; sha256="0npd2g3a4dh5hlj6l06k1pf0j4731ybqqd4mpi4id16nf81cg104"; depends=[ggplot2 Rcpp reshape2]; }; Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; }; RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.7"; sha256="07mhn8imn4y8kf50x2g7i55dyksh0sryjkzb09rkf64x49vq7ban"; depends=[MASS nloptr quadprog]; }; - Rita = derive2 { name="Rita"; version="1.1.0"; sha256="1kpnb8dk81w6gi8wmp1qfjkg9bqzbsniax4hdr6qg921rqaxwack"; depends=[lattice]; }; + Rita = derive2 { name="Rita"; version="1.2.0"; sha256="0qc969pjs7bn8c7alisqb2pvba22kkvd3lsfqz5wnrpy311s4jxr"; depends=[lattice]; }; Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; RiverLoad = derive2 { name="RiverLoad"; version="1.0.3"; sha256="01nrkj75smnsfrl0x82dif67q9xs15ngksz0p73i7xf6dqprjjcf"; depends=[imputeTS]; }; Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.8.3"; sha256="0p6b0vm7kp7fq9cghj92j98zkiwy22dnpbaqcsms25dd08ra49x7"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.8.4"; sha256="1k1acj7vzb08syrbagzkvxjfdlygjdjcpxim1qgrl451jby3hh8k"; depends=[httr jsonlite Rcpp]; }; Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-3"; sha256="0g610v5rch5s31gc7dy9zx4mcgsdhn82y1pmr2rs14qma0v7x515"; depends=[BH forecast Rcpp RcppEigen rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.2"; sha256="0hzsnrz30429pavf7qghknykah9ks4msb96zwa1xgvqb4zd512dg"; depends=[Rcpp]; }; @@ -4561,7 +4566,7 @@ in with self; { Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.2"; sha256="1xv500n1480qyakw0isanw1s5ywykhc207hqja4804s5s2m8zfjw"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; Rlof = derive2 { name="Rlof"; version="1.1.2"; sha256="0qhckcnhpzdm0035irip0lngbwxwiaanqf41lkrgkiyapymkfbxg"; depends=[doParallel foreach]; }; Rmagic = derive2 { name="Rmagic"; version="2.0.3"; sha256="0g2f887v820rjyjzcahfrnjvif8iwbhnfnjpd4ib3d9lps69agx1"; depends=[ggplot2 Matrix reticulate]; }; - Rmalschains = derive2 { name="Rmalschains"; version="0.2-6"; sha256="1dp0nys320i7pa7c0smz57vj6jk7wjvrnnn90z5w7m6xdb4rm369"; depends=[Rcpp]; }; + Rmalschains = derive2 { name="Rmalschains"; version="0.2-7"; sha256="02wkq0aqx679ysr5cr1r2h4k2700lppycz4bynalnpmqkvmr6wzs"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; @@ -4576,7 +4581,7 @@ in with self; { Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.0"; sha256="1x06a2bsfpx27pgpxj0dih72pav26g3j0lmh0fa8gjw45jc64f4a"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="2.1.4"; sha256="0zxpim1wgymdhdyl7dcvc16iic57wmn8qvxicps9kgr8wxgic0p8"; depends=[arrow data_table dplyr ggplot2 httr lubridate purrr tidyr]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; - RoBMA = derive2 { name="RoBMA"; version="2.1.2"; sha256="0qp2rs6wvkfprzi3rwb32wfnjvp7fs74a6mxl4bzfwgpv2ai4g33"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 psych Rdpack rjags runjags scales]; }; + RoBMA = derive2 { name="RoBMA"; version="2.2.1"; sha256="0hga8yzvjskislc7kb4dlvkk9cagwpcpxqry74hwix8si2hgsyc8"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 mvtnorm psych Rdpack rjags runjags scales]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.2.1"; sha256="0dn93bcyz9kxbj38sc1wisfa6v0666v9gk6y3zq0ihjkkhkmdwq3"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; @@ -4605,7 +4610,7 @@ in with self; { RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; }; RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.2.1"; sha256="0qd6cmzp8fkb75ac79xbh4032vqwax7nk7d6yykpdbn0bnk2kvdi"; depends=[doParallel foreach inflection iterators]; }; - Ropj = derive2 { name="Ropj"; version="0.3-1"; sha256="1g3rqcj690034swl8f3i9wn80n3k1zha8b3vmygghpvcrj6hm2qf"; depends=[Rcpp]; }; + Ropj = derive2 { name="Ropj"; version="0.3-2"; sha256="1c9d2paa5b2ym8qn608hyimr3fbns7nxrhk1bms87cgd8a7sqaf0"; depends=[Rcpp]; }; Rosenbrock = derive2 { name="Rosenbrock"; version="0.1.0"; sha256="0qfdyr66g244jvbnssbnj2b2ng740dr4qmillpnwl4h2hh811syv"; depends=[MASS]; }; Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; }; @@ -4629,7 +4634,7 @@ in with self; { Rrdap = derive2 { name="Rrdap"; version="1.0.2"; sha256="1v4q5pgk4ycwi2m807iqz6j2bvsm4x4dvqg5vr5fa8ggfw40xvz7"; depends=[curl rjson stringr]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; RsSimulx = derive2 { name="RsSimulx"; version="2.0.0"; sha256="11ji1fvf6rclzh8yw1d7d4zkfzsyw4jsfwyhxlx9j0kqyr0jz5bc"; depends=[ggplot2 gridExtra]; }; - Rsagacmd = derive2 { name="Rsagacmd"; version="0.1.2"; sha256="0zj9a63hq8pm592lvf3n62pzn0lfkh02d4v4mkqhgixx7jaxyz2x"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; + Rsagacmd = derive2 { name="Rsagacmd"; version="0.2.0"; sha256="1z92fk7j2n6zzplfc3xlhnaynn2i2cp6cq6hw621fmnf09ccq005"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; Rserve = derive2 { name="Rserve"; version="1.8-10"; sha256="0b2x6kqrc23xah6bg7c6ncmq8wkj4z898r2qjwjyinsq965a4qxg"; depends=[]; }; @@ -4658,7 +4663,7 @@ in with self; { Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.35"; sha256="15yndyw3rlxkb1mqq8db5csc6xl1zjyhrgzgx4b7iln59l3dgwfr"; depends=[]; }; - Rvcg = derive2 { name="Rvcg"; version="0.20.2"; sha256="04kwn7hp1gyw2daxg2vwfalhggj7x3vl03qd9m0wr5nsccjd29cy"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.21"; sha256="13b3l72ii7ndzmglf48xz1lm7kkpsca2q6148ihgbrpnv9n0w5r1"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; Rwave = derive2 { name="Rwave"; version="2.6-0"; sha256="1si4iambn5kxagc24gy83hlvv5zgypz6dqxbzk24qxzfwglkhqzb"; depends=[]; }; @@ -4668,7 +4673,7 @@ in with self; { Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="1.1.4"; sha256="108anb3zyyr378qwnsf1mdxsmkl3h333b4fzclr9xc351x0j1rdm"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; + RxODE = derive2 { name="RxODE"; version="1.1.5"; sha256="055g910dwn3v64mqqaidxhk4n6kwfyq3qpvp1grppzz50a0sz2zj"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; @@ -4677,7 +4682,7 @@ in with self; { SACOBRA = derive2 { name="SACOBRA"; version="1.2"; sha256="1v45l56vifkg3v2bfhk3kfg4fn0dfvrjcgy13zzymm8blr7vazi5"; depends=[mgcv R6 testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.2"; sha256="0yn7f360wl5ykys5zln159xh2h8bx7zb5ddwhv1migjlqry506hp"; depends=[DDD pracma]; }; - SAEval = derive2 { name="SAEval"; version="0.1.1"; sha256="036k13q0746rcshpwzrf33mrwa8c3i4bdh14s53xngzzdfxckxlr"; depends=[car ggplot2 ggspatial lmtest]; }; + SAEval = derive2 { name="SAEval"; version="0.1.3"; sha256="02zdxk35f49px9z4hdn09x4v0jxyjzb48kk02w112faf86b3gvmb"; depends=[car ggplot2 ggspatial lmtest]; }; SAFARI = derive2 { name="SAFARI"; version="0.1.0"; sha256="10fmav9dbq5kbgy8gjsp3561vi46bjvkh2wqjs39vx5z8x1ml7i3"; depends=[caTools EBImage lattice png]; }; SAFD = derive2 { name="SAFD"; version="2.1"; sha256="078ki9wrmcf80bwhx4d56gas79xrc17a0081i13yxvjqn6w7f7jd"; depends=[]; }; SAGMM = derive2 { name="SAGMM"; version="0.2.4"; sha256="18ig7ncmrfs5cyc28xpbqk9zjhwqfp7gwix7y2v1j4j2wbdc2hzs"; depends=[lowmemtkmeans mclust MixSim Rcpp RcppArmadillo]; }; @@ -4690,7 +4695,7 @@ in with self; { SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; - SAMtool = derive2 { name="SAMtool"; version="1.2.5"; sha256="0br63g50x2pldf1xy72ji57ajkzil4jvw118bjarqjkjz68yk2ak"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.2.6"; sha256="14r6mpcq77xlcj5dzffi5kf9bcdw84jml534049y5kndnipgs7da"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; @@ -4698,7 +4703,6 @@ in with self; { SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.4.3"; sha256="0jc21ylflvv4snik13731acxh9zw79s7hpswk58p2wzvavq8k9zn"; depends=[knitr]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; - SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; SAutomata = derive2 { name="SAutomata"; version="0.1.0"; sha256="0d9q7bm2f7s4aslml40n43vwcdkc8rnn9ygydccwi4b9a7y23k58"; depends=[]; }; SBAGM = derive2 { name="SBAGM"; version="0.1.0"; sha256="0vb1679016b0bhz2xlka9wgr2fxwa0447ymfncm1n5fks60rrnnf"; depends=[forecast MSGARCH rugarch]; }; @@ -4750,23 +4754,25 @@ in with self; { SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; + SEA = derive2 { name="SEA"; version="2.0.1"; sha256="03iqvs95v2q252dl62z39i0nwg8n44g1p9ljbmb1nx6zq98fd7bw"; depends=[data_table doParallel foreach KScorrect MASS shiny]; }; SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; SECP = derive2 { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; SEERaBomb = derive2 { name="SEERaBomb"; version="2019.2"; sha256="0rlah68jbaw4qbqq5rnlrm6m9ckz7igbsay6iq1yvk4gy24p9bfh"; depends=[DBI demography dplyr forcats ggplot2 labelled LaF mgcv openxlsx plyr purrr Rcpp readr reshape2 rgl RSQLite scales stringr survival tibble tidyr WriteXLS]; }; SEIRfansy = derive2 { name="SEIRfansy"; version="1.1.1"; sha256="0xnyrsv04n22s71v1wajwpccwk78q27fgry9dhxxzw8a6yd082x8"; depends=[arm DescTools dplyr ggplot2 ggpubr knitr magrittr patchwork pbapply rlang scales]; }; - SEL = derive2 { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[lattice quadprog]; }; + SEL = derive2 { name="SEL"; version="1.0-3"; sha256="0nkr6m4aq4i0vq19v04lfkjmmjii1dfqsj1mfwagwsw6ain1jarr"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.4.0"; sha256="1888l4m7d944j4cmh6l19fjmrsh6r6xlfwjzpvyanxd769xmyfzc"; depends=[igraph R_methodsS3 R_oo R_utils]; }; - SEMgraph = derive2 { name="SEMgraph"; version="1.0.5"; sha256="1yr77c46y009h7ra842flvlmi7q1n9bk6ji9wlwkyl62caqn5ksi"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan Matrix pbapply protoclust RcppEigen Rgraphviz]; }; + SEMgraph = derive2 { name="SEMgraph"; version="1.1.0"; sha256="11r3iqwascq0lwdn2mazanhfljxvqzahqpzzqbska1ww3ywwx5yy"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan leaps Matrix pbapply protoclust RcppEigen Rgraphviz]; }; SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; }; SEMsens = derive2 { name="SEMsens"; version="1.0.2"; sha256="18qcwhn1j9ci6338spwgym9g8590p5nc5sdvnpby3xrs9wv76nqs"; depends=[lavaan]; }; SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; }; SEofM = derive2 { name="SEofM"; version="0.1.0"; sha256="0662f4ayr05h33myxbfal682fxfwpl3a94kv4bzc8hil9bcqcznf"; depends=[]; }; + SEset = derive2 { name="SEset"; version="1.0.1"; sha256="127z85m95xn46s7lk3sdzrs73mi7pa2smx9r80fnl678f2kyz6lm"; depends=[combinat Matrix Rdpack]; }; SFS = derive2 { name="SFS"; version="0.1.4"; sha256="1pig64pj30yyfzyv97f74gshw4lnklrx0npp4da3absk6anb3iv7"; depends=[Rcpp RcppArmadillo]; }; - SFSI = derive2 { name="SFSI"; version="1.0.1"; sha256="1k2bshl8grivzy1rmwlp4f2v994zv83rkw3ia72fa1q85wrwdhab"; depends=[float]; }; + SFSI = derive2 { name="SFSI"; version="1.1.0"; sha256="13ishxa3482dl1w2j43jkpb4cky95hnrzyjbj2cpk5cn860zvxs1"; depends=[float]; }; SFtools = derive2 { name="SFtools"; version="0.1.0"; sha256="08k2ywkpk1pzp0qcwm7qx9gnv9hglspl9hrsrrfblagdpkw6rm2x"; depends=[doParallel ff wordspace]; }; SGB = derive2 { name="SGB"; version="1.0.1"; sha256="0j48fx9bf2k8k3ykp629jfi1jbs23673nz6rg54rvcrrsl6hb9v3"; depends=[alabama Formula MASS numDeriv]; }; SGL = derive2 { name="SGL"; version="1.3"; sha256="055mx876ydg4kzvcm6rxfkxqz849zgzkzsskvrfgwj9fs1k6ja2v"; depends=[]; }; @@ -4775,7 +4781,7 @@ in with self; { SHAPforxgboost = derive2 { name="SHAPforxgboost"; version="0.1.1"; sha256="106nsf02b1w3yshb55lwnyw1rl1a60162v2wk8znjz3b4ln3mqj5"; depends=[BBmisc data_table ggExtra ggforce ggplot2 ggpubr RColorBrewer xgboost]; }; SHELF = derive2 { name="SHELF"; version="1.8.0"; sha256="05kr2y5wqbpw3ajf5pbhhfyqv7n3zw3kb7ba2j24sr62jlin3avv"; depends=[ggExtra ggplot2 ggridges gridExtra Hmisc MASS rmarkdown scales shiny shinyMatrix tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; - SHT = derive2 { name="SHT"; version="0.1.5"; sha256="1yk2y4j8b07lh34r7cpwq6amw7940x6mwn5s1487lz8j26670xmx"; depends=[fastclime pracma Rcpp RcppArmadillo Rdpack]; }; + SHT = derive2 { name="SHT"; version="0.1.6"; sha256="1pxw2fbdzczx33w4fgkikxqchwimwc7rxq5bxinf230a94nl4qwr"; depends=[fastclime pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.6"; sha256="1ymr1y2c984nnjkj5nwc1mi4ixdwg8d191nn58i0dvckzm922z80"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_geom spatstat_utils tidyr]; }; SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; @@ -4796,9 +4802,8 @@ in with self; { SITH = derive2 { name="SITH"; version="1.1.0"; sha256="1626nsbnz4fh49wymxm1cqb0nrfyxhmh9fmdxr62dzj5b53amknc"; depends=[Rcpp scatterplot3d]; }; SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; - SKAT = derive2 { name="SKAT"; version="2.0.1"; sha256="1iz8s2r295w36m44s2frrz00q4zm78fyzx7kprmnz4kbg3spqqy8"; depends=[Matrix SPAtest]; }; + SKAT = derive2 { name="SKAT"; version="2.2.4"; sha256="1gq8zy3rrpsx09bgli30cx32k73yn4jzqig250s8rl8aasb9hd1b"; depends=[Matrix RSpectra SPAtest]; }; SKNN = derive2 { name="SKNN"; version="3.0"; sha256="1zcsyc8x4cfkj5im9hsv091f2hca3y09fra3y0rl19jiwzvpjgy9"; depends=[]; }; - SLBDD = derive2 { name="SLBDD"; version="0.0.2"; sha256="1ixynzrj6vdxn406zcisrkhf9yr172s80k70dishrainkpw2dk58"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; SLDAssay = derive2 { name="SLDAssay"; version="1.8"; sha256="04ykj7s9kpvg5bmf7x16154kfpdy45b7y7hhyh31sxlscv7c5bbp"; depends=[]; }; SLEMI = derive2 { name="SLEMI"; version="1.0.1"; sha256="07bsy0v8grx1l5837jr8mdab08521kxivhwr59q3s0v6f08683yd"; depends=[caret corrplot doParallel e1071 foreach ggplot2 ggthemes gridExtra Hmisc nnet reshape2 stringr]; }; @@ -4807,7 +4812,7 @@ in with self; { SLICER = derive2 { name="SLICER"; version="0.2.0"; sha256="10i0hfl6js26n8xwk9pldzm9vv7hmii6gzj04lhqy0g3njds25kp"; depends=[alphahull igraph lle]; }; SLIDE = derive2 { name="SLIDE"; version="1.0.0"; sha256="0x4fm29r7icg33k8gw3vqvxib8n9a1xwg484x9yffybips9ka22c"; depends=[]; }; SLModels = derive2 { name="SLModels"; version="0.1.2"; sha256="1c9r4kd2kfh2cn82kngzcqhdmxc4i7djp436s116gy9xs2gd2042"; depends=[ROCR]; }; - SLOPE = derive2 { name="SLOPE"; version="0.4.0"; sha256="18lw7csji9n10zk4lhcvy9193sra08pwvh1yrhl33bl17m026nkv"; depends=[foreach lattice Matrix Rcpp RcppArmadillo]; }; + SLOPE = derive2 { name="SLOPE"; version="0.4.1"; sha256="0v8zjh4vy6s46s5dv71jizg7dad2x97wbr62p6cc5c3cfyl683wk"; depends=[foreach lattice Matrix Rcpp RcppArmadillo]; }; SLTCA = derive2 { name="SLTCA"; version="0.1.0"; sha256="0pq87fbi79srgjblv40yyj3w1dzf115kfidp8gi564l8xf0qilqg"; depends=[geepack Matrix mvtnorm VGAM]; }; SMARTAR = derive2 { name="SMARTAR"; version="1.1.0"; sha256="0ymhka4pjlqlnpv47abmc76ggijfw83i3jp9mrspnzcnb4d378xm"; depends=[MASS]; }; SMARTbayesR = derive2 { name="SMARTbayesR"; version="2.0.0"; sha256="15s6vzxgbskjvgd91q0vb9qxmmsj391bjbw7s51j879cfqd16xg2"; depends=[LaplacesDemon]; }; @@ -4823,7 +4828,7 @@ in with self; { SMM = derive2 { name="SMM"; version="1.0.2"; sha256="1g1c7ssdcnzgv6b221ya1xrypg2ksahc7qj1042j8nlx5wg29cld"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.3"; sha256="1nwxp447m1igm7dlxw5kqw472f8470svwx9awjp2d84m66wplinr"; depends=[Rcpp RcppArmadillo]; }; SMME = derive2 { name="SMME"; version="1.0.1"; sha256="1iklrj9smjmxjjip8v64ph6gisg5821glck26cy7s15pcj5mdbz5"; depends=[Rcpp RcppArmadillo]; }; - SMMT = derive2 { name="SMMT"; version="1.0.7"; sha256="1jbxz905zaxv19rlw9xs29lnc56nyhcslr322kz2rdx1jk83m28f"; depends=[curl dplyr rvest tibble XML xml2]; }; + SMMT = derive2 { name="SMMT"; version="1.1.0"; sha256="1zjvdjz75qhfdm4maiq2rw9bzqa2xls15vpr3556iba5aq4hysv7"; depends=[curl dplyr rvest tibble XML xml2]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-3"; sha256="0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; @@ -4847,7 +4852,7 @@ in with self; { SOMEnv = derive2 { name="SOMEnv"; version="1.1.2"; sha256="03g1c9ip0bmc5zhnzami3f525m9ic6v5gdhaxc8s7f1nxjf2fcdy"; depends=[colourpicker dplyr kohonen openair plyr rlist shiny shinycssloaders shinycustomloader]; }; SOMbrero = derive2 { name="SOMbrero"; version="1.4-1"; sha256="0b9w8xr067hz2lzvxn7xz3llzhyqynskh08rsx7d73gnm56kdcp2"; depends=[ggplot2 ggwordcloud igraph interp markdown metR scatterplot3d shiny]; }; SOP = derive2 { name="SOP"; version="1.0"; sha256="1c9haq0ds90rwhvmdicaxhzf7vz2m343491sw9qw7w7fbs4fn9fp"; depends=[MASS]; }; - SOPC = derive2 { name="SOPC"; version="0.0.1"; sha256="0xji7c2v8rmsdvpk8g35m8bx9lk0cy29yc5f4q8zv8qjxiy9yz7v"; depends=[elasticnet]; }; + SOPC = derive2 { name="SOPC"; version="0.0.2"; sha256="0j2h0jc3c7nvqgx76ycakm3a3xq95ixzvamwxd1p54kykr7c6wrf"; depends=[elasticnet]; }; SOPIE = derive2 { name="SOPIE"; version="1.6"; sha256="1q6991l1wldywv685dv1pkd8ma8jlx4inqr6p1fw1xr7ymm8b1q2"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; @@ -4862,6 +4867,7 @@ in with self; { SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPCAvRP = derive2 { name="SPCAvRP"; version="0.4"; sha256="10bvr4lqnim40fihq495a4fy4f33pvfd7gsaqjj9bh6gy0z8y4mi"; depends=[MASS]; }; SPCDAnalyze = derive2 { name="SPCDAnalyze"; version="0.1.0"; sha256="0zaxlc4dw678s0v22ghv7mc4vqsgkcnmbxh7065w6qj9vm7pg5kz"; depends=[lme4 nlme plyr]; }; + SPCompute = derive2 { name="SPCompute"; version="1.0.1"; sha256="18hcdwf78ly9nsl2r4sfvg7r9wk6q6rdgd6c5vvna8l0bmcrji6s"; depends=[Matrix]; }; SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.9"; sha256="0z27h9yl5lyayqa1wqj700kxrgyi1h13bqm3bbq8zml91dyq209c"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; @@ -4871,8 +4877,8 @@ in with self; { SPLICE = derive2 { name="SPLICE"; version="1.1.0"; sha256="1jcw7nikla75aqfbplv2cklq19rfd8naamldvllzy2pjb879vqkk"; depends=[lifecycle SynthETIC zoo]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; - SPOT = derive2 { name="SPOT"; version="2.5.18"; sha256="1zgcvz78q8hd9bzhayv35rwgwansank1d9yb2qyihy3m0jw6c428"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; - SPOTMisc = derive2 { name="SPOTMisc"; version="1.2.18"; sha256="0k23bpnac9fzkin1fa23kix21jid6ycv3akj7vxhgcx64mslvbkm"; depends=[benchmarkme callr emoa ggsci jsonlite keras mlr plotly RColorBrewer rpart_plot sensitivity SimInf smoof SPOT]; }; + SPOT = derive2 { name="SPOT"; version="2.8.2"; sha256="1z3hc29lk8vycrnq4kf5gqzglblgyj7ijg4sghk6vfb1apvrndsg"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; + SPOTMisc = derive2 { name="SPOTMisc"; version="1.7.0"; sha256="09gjvw0jvdn5gys41afzkdkyw0rc4lvx2w9l317wrx018l72wva6"; depends=[benchmarkme callr emoa ggsci jsonlite keras magrittr mlr OpenML plotly RColorBrewer reticulate rpart_plot sensitivity smoof SPOT tensorflow tfdatasets]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; @@ -4880,7 +4886,7 @@ in with self; { SPSP = derive2 { name="SPSP"; version="0.1.1"; sha256="0bzlgjijwp5y6lk9hjqc2p8b1i6mp8jd7j7gsl47whc3lavr1nn8"; depends=[glmnet lars Rcpp]; }; SPUTNIK = derive2 { name="SPUTNIK"; version="1.4"; sha256="1sspsvll7b03z2ag2iixydcbbjr2glg1n6k7m1lapq4ra77arh7i"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils testthat viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; - SPlit = derive2 { name="SPlit"; version="1.1"; sha256="0vxbwclcipf0wz391yp5qb8ndxqxq8pzkf4vz7fszdb70yrqa5b7"; depends=[Rcpp RcppArmadillo]; }; + SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreg = derive2 { name="SPreg"; version="1.0"; sha256="1702i86qcbnqyi7r5wc2ciyk3l46329kmnrz91jzqq85z8cwgak1"; depends=[sn ucminf]; }; SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; @@ -4889,9 +4895,9 @@ in with self; { SQRL = derive2 { name="SQRL"; version="1.0.0"; sha256="1jlyrq42sg8r7fzs5sk0j8rir1mz3ypjy76mk00y8lm789knnzd7"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2021.1"; sha256="0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6"; depends=[]; }; SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; - SRS = derive2 { name="SRS"; version="0.2.2"; sha256="1f94imnb12gnl2h815l080l3a1fqz7hz30277pvansyyz3ihvani"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; + SRS = derive2 { name="SRS"; version="0.2.3"; sha256="0nx1sj91xkwplcmflq9c21zndaa4m21m9iqax86v947k070q48ql"; depends=[DT shiny shinybusy shinycssloaders vegan]; }; SRTtools = derive2 { name="SRTtools"; version="1.2.0"; sha256="1203i6nqclx0faxyvhdaapmfxy8h95jj83svxriqh1hpava5s1dy"; depends=[magrittr]; }; - SSBtools = derive2 { name="SSBtools"; version="1.2.2"; sha256="17xs0zdzsl0hy2hhgr8f7sb1cf5nxza4147198cq7lrrwx39flv7"; depends=[MASS Matrix stringr]; }; + SSBtools = derive2 { name="SSBtools"; version="1.3.0"; sha256="1xis0yb8jp8g333ddrkfjprj4l8hlxkj1fzmglwx4sknklbcq66h"; depends=[MASS Matrix stringr]; }; SSDL = derive2 { name="SSDL"; version="1.1"; sha256="0m05m00qsjyc69kix124z6nrplqv1yaaag7qxpiizbn664h9hmjb"; depends=[bigstatsr chickn doParallel doRNG foreach glmnet pracma Rcpp RcppArmadillo RcppParallel Rdpack reshape2 rmio]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; SSDforR = derive2 { name="SSDforR"; version="1.5.23"; sha256="1085fpal55nlix3qhym8kgmnhf8hhy2dpw71r90f4hqsrqdfkwjy"; depends=[MAd MASS metafor psych SingleCaseES TTR]; }; @@ -4922,6 +4928,7 @@ in with self; { STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; }; STMotif = derive2 { name="STMotif"; version="2.0.1"; sha256="07725wdm65lxmmivdipxd07yqi3syy7dl10shn4x60ahs0il91nw"; depends=[ggplot2 RColorBrewer reshape2 scales shiny]; }; + STMr = derive2 { name="STMr"; version="0.1.3"; sha256="0vcfns09x0fcm5hdymp4xg6c33sw3ll66zgjn057652lb1ddyqxq"; depends=[dplyr ggplot2 ggstance magrittr nlme quantreg tidyr]; }; STOPES = derive2 { name="STOPES"; version="0.1"; sha256="0gv58nf0m67bfqc15c7n4gksqk7h661c9b55qapk210j259b7xbv"; depends=[changepoint glmnet MASS]; }; STPGA = derive2 { name="STPGA"; version="5.2.1"; sha256="0mwjv9r7x925ljmbwk2fl0xvf2n2hnf5n5z5p5rxr57ywvirqw1b"; depends=[AlgDesign emoa scales scatterplot3d]; }; STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; @@ -4935,8 +4942,8 @@ in with self; { SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.4.1"; sha256="1dqhsqigfbfj167mp2h0wfybaymj9zlywh5d3syrrmpr694f9kz5"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.1.1"; sha256="1d8lpz2ywr50m9w0a53rff26l33vx2a1lbx5hsiiq0mbg4m5r9jc"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; - SWTools = derive2 { name="SWTools"; version="0.2.3.0"; sha256="04csm7m9xrs4d5b37yy2hzi35m03rm6kqxmzh8lwqj5qbyd07gdp"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.0"; sha256="0i4dvsd4g1nah9g3q6wxkrp5xynwmhg2a94msiwxgq0ffg11di1q"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; + SWTools = derive2 { name="SWTools"; version="0.2.3.1"; sha256="19641hnzqzrk35brfsls0ib5c9920h30mizzpfias3jvmijjdj7n"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; @@ -5008,6 +5015,7 @@ in with self; { ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.4"; sha256="15ds3024qcvnq3pnbhpyd6hbif26mdzw1srqv44hwsllgzpi7602"; depends=[coneproj raster]; }; ShapleyValue = derive2 { name="ShapleyValue"; version="0.2.0"; sha256="05ziyvvd81l0lx572in9snndnjdq8y4wkd8bxqs0y979l49yr6fd"; depends=[kableExtra MASS tidyverse]; }; SharpeR = derive2 { name="SharpeR"; version="1.3.0"; sha256="1xq2m53n2gc706lyd16gccllx2wgwdrqkfpf79jwwdmipqfqnxjx"; depends=[matrixcalc]; }; + SheetReader = derive2 { name="SheetReader"; version="1.0.1"; sha256="1n3shs0yvy5mxwqkiavldzq739bq96qh8skbcc1pr5iywpq9vxa6"; depends=[Rcpp]; }; ShellChron = derive2 { name="ShellChron"; version="0.4.0"; sha256="1xb06zszwirn5l63qa9g99q9by58sdqpg8s6kiq70z5qqnlgiq5c"; depends=[dplyr ggplot2 ggpubr magrittr rtop scales tidyr zoo]; }; ShiftConvolvePoibin = derive2 { name="ShiftConvolvePoibin"; version="1.0.0"; sha256="0pj3vynm8afns2kcwvmramxgbd0s2ksyyc5iha6p4dw2nz4hahc7"; depends=[]; }; ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.0.1"; sha256="09sm3frapxv1zhxy84wqyaxdk5jx62ijszfa34zlknlgivividfy"; depends=[Formula]; }; @@ -5025,7 +5033,7 @@ in with self; { SightabilityModel = derive2 { name="SightabilityModel"; version="1.4.2"; sha256="0hll6cfl0zkxvdbfs7cdmqazinyyrg9vk4px2gb9s1dqix7cyvv5"; depends=[formula_tools Matrix msm plyr survey]; }; Signac = derive2 { name="Signac"; version="1.6.0"; sha256="1fh0n15snbj3cv1wfzl084188g9xsxxi4j511j3rvji3ik0nbd6z"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggforce ggplot2 ggrepel ggseqlogo IRanges irlba lsa Matrix patchwork pbapply qlcMatrix Rcpp RcppRoll Rsamtools S4Vectors scales Seurat SeuratObject stringi tidyr tidyselect]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; - SignifReg = derive2 { name="SignifReg"; version="4.2"; sha256="0bgw6dkn15rlpcqfpbar3nxvcvwd0afa3lss4idnb65kvcyzzljk"; depends=[car]; }; + SignifReg = derive2 { name="SignifReg"; version="4.3"; sha256="1f57zbc7746jr2hfgri29whw5nb7w8h9nwk2p2n851b1rf7q0mgp"; depends=[car]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; }; SimBIID = derive2 { name="SimBIID"; version="0.2.1"; sha256="01gkkgxx5x9pkwsmpmf1rg4i0ls7fl6yv6pcg8gscr51bnxsrwpp"; depends=[coda dplyr ggplot2 mvtnorm purrr RColorBrewer Rcpp RcppArmadillo RcppXPtrUtils tibble tidyr]; }; @@ -5035,7 +5043,7 @@ in with self; { SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; }; SimDesign = derive2 { name="SimDesign"; version="2.8"; sha256="0pp9bys2g30rmksgiz1icv6g4cd3x214ab9yr3grl5wy77m1ygzf"; depends=[beepr dplyr foreach pbapply RPushbullet sessioninfo]; }; SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; - SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; }; + SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.2"; sha256="06ypk5bsbvv5lf55jk7dmp8j820c0ywgvcnlh790zfkjcxyqaa0k"; depends=[plot3D plot3Drgl rgl]; }; SimEngine = derive2 { name="SimEngine"; version="1.0.0"; sha256="15rdwpbcypymk9s34iwqzqzqcailhsldzq6c2d9b6jgsp81yy7qk"; depends=[data_table dplyr magrittr pbapply rlang]; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; @@ -5048,16 +5056,16 @@ in with self; { SimReg = derive2 { name="SimReg"; version="3.3"; sha256="1liwwbi3zqrcbqx5przdlzhnq7jvyjd6yhaxalhwggzf9zv7w8ci"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; }; SimSeq = derive2 { name="SimSeq"; version="1.4.0"; sha256="068gg484w07qb4wajik2s3z79xfj0jg5l4pz69267dxi5kzd9fas"; depends=[fdrtool]; }; - SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.1"; sha256="0jncq5q3ijczpa4h1i74035w36grjy2p8x71gx58v69ab3ca62k6"; depends=[Rcpp RcppArmadillo]; }; - SimSurvey = derive2 { name="SimSurvey"; version="0.1.4"; sha256="0n3acx279qrw5bxx77b1rpq12hrm26di2csxkhdv8c0mbwv4p2pf"; depends=[data_table doParallel foreach magrittr plotly progress raster rlang sp]; }; + SimSurvNMarker = derive2 { name="SimSurvNMarker"; version="0.1.2"; sha256="1k62n56mzxv40j0g7631g6r18sgddwsl59wlyi0s5rzwjmiwpbgk"; depends=[Rcpp RcppArmadillo]; }; + SimSurvey = derive2 { name="SimSurvey"; version="0.1.5"; sha256="1i417kp7lcd7a19bna2y29sirgv30bb3xs8i4a2l6zmbq0kqsgf8"; depends=[data_table doParallel foreach magrittr plotly progress raster rlang sp]; }; SimTimeVar = derive2 { name="SimTimeVar"; version="1.0.0"; sha256="1x0lkgqwx1vz1gbyvy0hx20n638n30j0dny1iz5vs0cvviq3cdv8"; depends=[car corpcor ICC metafor miscTools mvtnorm plyr psych]; }; - SimVitD = derive2 { name="SimVitD"; version="1.0.1"; sha256="1rpsvi5pdj4njvbdz1xpq6qhplk07p4qsm4dmbbbkl648674bqb0"; depends=[wBoot]; }; + SimVitD = derive2 { name="SimVitD"; version="1.0.2"; sha256="1ddzp43bnna6n96h6qkqfis1l7mihf20wcy98cn37ri96zacwly4"; depends=[simpleboot]; }; SimilaR = derive2 { name="SimilaR"; version="1.0.8"; sha256="1wlxscl94r3gxwsc9yw0y4z5nj28nxilijp0pbzv4z2n4aqc7vy6"; depends=[BH Rcpp stringi]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.3"; sha256="06dpbawn650lzybd5j4xkygbg5s2nqfz6b4g0skm4z7lsb2d9dhb"; depends=[]; }; SimplifyStats = derive2 { name="SimplifyStats"; version="2.0.4"; sha256="08775g6fdx09y8pkfq4k8zxbxpwah7yqq5cg30lmxl7zrpmza5hv"; depends=[assertthat broom dplyr moments tibble]; }; - SimplyAgree = derive2 { name="SimplyAgree"; version="0.0.2"; sha256="1jax36yqr1j9zwbv69x81fyyd5ymy84k9mvvn3qvvngab6daqxlg"; depends=[boot cccrm dplyr emmeans ggplot2 jmvcore lme4 magrittr sjstats stringr tidyr tidyselect]; }; + SimplyAgree = derive2 { name="SimplyAgree"; version="0.0.3"; sha256="16kii3i7ys4j3v4iw4ma4l87z8wjhnkhqzi03id3mhv8b39b8l4i"; depends=[boot dplyr emmeans ggplot2 jmvcore lme4 magrittr stringr tidyr tidyselect]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; SingleCaseES = derive2 { name="SingleCaseES"; version="0.5.0"; sha256="17fvh327cwc809v3zkz3xqb0i1nc954xha60yq6wjc8n33d8qlqy"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hydroGOF hyfo RColorBrewer solaR]; }; @@ -5101,8 +5109,8 @@ in with self; { SolveSAPHE = derive2 { name="SolveSAPHE"; version="2.1.0"; sha256="1r42h19l186jry2wxmrp9y1jdcwr7wx4an3nmryc4l33f48idbfr"; depends=[]; }; SongEvo = derive2 { name="SongEvo"; version="1.0.0"; sha256="0mc5wlf5axbflys6g8b7xg0di3wwkli7q0a9fby6598fq9hbaqpd"; depends=[boot geosphere lattice sp]; }; SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; }; - SortedEffects = derive2 { name="SortedEffects"; version="1.6.0"; sha256="1rs7cx81fig4mnnk8bzma36a00qb8sywy2qj228hvjwk3ghpb3bi"; depends=[boot dummies Hmisc pbapply quantreg SparseM]; }; - SoundShape = derive2 { name="SoundShape"; version="1.1.0"; sha256="0nv04r4anl3mpmdv2bhzpk5fp939pczz606648x9v414ymaa4q89"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; }; + SortedEffects = derive2 { name="SortedEffects"; version="1.7.0"; sha256="188qlgg3m8f07hbjim65yw3qy6200y0b54imkdqm8mq0f14nmi0f"; depends=[boot Hmisc pbapply quantreg SparseM]; }; + SoundShape = derive2 { name="SoundShape"; version="1.1.9"; sha256="0akkqxiyw79dbhp3a31nrwd5q7a0204vnyddp5l423x5xj8q2x0g"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; SoupX = derive2 { name="SoupX"; version="1.5.2"; sha256="1zhd2vx4g3kpxpfq996h909k4lybzb79nw1kvhx7073aniq042c3"; depends=[ggplot2 Matrix Seurat]; }; SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; @@ -5132,15 +5140,16 @@ in with self; { SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.7"; sha256="0hfspksv9dgi98kcjwa291x8dglskfl4d1cjkd2hqxlf73havpzx"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-9"; sha256="1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"; depends=[fields maps]; }; - SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; }; + SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.7.0"; sha256="0qmky12886bw2i7lnhcqq9zzyzmbh1670c8l2adqjiz9k0cykmp4"; depends=[dplyr glue magrittr raster Rcpp rlang sf vctrs]; }; SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.0"; sha256="0nsrf30bl3yc1h1kldv1ah1jjb4qh4hd99rd1nz9q9rqmdp0dcrw"; depends=[Rcpp]; }; SpatialML = derive2 { name="SpatialML"; version="0.1.3"; sha256="0akip0kkd1jjid12iwmaxkhkvcfzkxmrnrsv0b6nnvpjdl1jb589"; depends=[randomForest]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; + SpatialPOP = derive2 { name="SpatialPOP"; version="0.1.0"; sha256="0pgd4injkimjp6pid42arhfbavx2i8crkdvqr35bjvf26p7hbvv3"; depends=[MASS numbers qpdf]; }; SpatialPack = derive2 { name="SpatialPack"; version="0.3-8196"; sha256="0kbv4ddl8zdm5z8vi6cj0x59paf669js9vgm28d74yxrdmjy29wh"; depends=[fastmatrix]; }; SpatialPosition = derive2 { name="SpatialPosition"; version="2.1.1"; sha256="0p2ii6pwxqrywp7m3hql2js9211vx6jk8lz76cbkzaz1i1g1q90k"; depends=[isoband raster sf sp]; }; - SpatialRegimes = derive2 { name="SpatialRegimes"; version="0.2"; sha256="01kbfwzq58zcvclrnmb9n5y3n0ki9nr8zbxyyanzqn7xcng8qmnb"; depends=[GWmodel plm quantreg spdep]; }; + SpatialRegimes = derive2 { name="SpatialRegimes"; version="1.0"; sha256="1y5b30r355bb7z48drng4g2m1ldrcisfg40y6p6idl5ad8flh05j"; depends=[GWmodel plm quantreg spatialreg spdep]; }; SpatialRoMLE = derive2 { name="SpatialRoMLE"; version="0.1.0"; sha256="1m80vcd27g11v0gxnjz6p4ghljpxdb8jpkns8ry5yzhfvcpf29jc"; depends=[]; }; SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; }; SpatialVS = derive2 { name="SpatialVS"; version="1.1"; sha256="1xghfiz9wmmx11ssms7zjy3ggkjmc6kkbdwp3v5wjwpwapafzdk3"; depends=[fields MASS nlme]; }; @@ -5158,7 +5167,7 @@ in with self; { Spillover = derive2 { name="Spillover"; version="0.1.0.1"; sha256="0jwhih0jzd6grd9y967k7j5vwv9sd20xqi2270y1cgl64v21bjzm"; depends=[fastSOM vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; SplitGLM = derive2 { name="SplitGLM"; version="1.0.2"; sha256="0708jz8j44lw6zs5f6w4v9pf7apd22j15g7lszc8kwlm8xsnnkf6"; depends=[Rcpp RcppArmadillo]; }; - SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.1"; sha256="090q3hw010rnnqj7qi615h6xlbkaxkrv9gsaxdfwhcffvpfi9anr"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; + SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.2"; sha256="1ywh86gkkcc2dddqfgs5w8w9wyjfqmvcr31jga41ddvj5rb8zkhx"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; @@ -5190,7 +5199,7 @@ in with self; { SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; StempCens = derive2 { name="StempCens"; version="1.1.0"; sha256="0jphyikfggx0yj5f5k3fykf3fdv9msppymzpyin1m7xfmfi5cwia"; depends=[distances ggplot2 MCMCglmm mvtnorm Rcpp RcppArmadillo Rdpack tmvtnorm]; }; - StepBeta = derive2 { name="StepBeta"; version="0.1.0"; sha256="1z19adh5ldcpx3g473f6j5kv2s37wbsrv36g0ss09c87z89zp5wz"; depends=[betareg glue]; }; + StepBeta = derive2 { name="StepBeta"; version="0.1.1"; sha256="15kk0sfakqmhqsmp5hdwd1l8ppivbgaclfzdci8a9f1yj0bzwcmr"; depends=[betareg glue]; }; StepReg = derive2 { name="StepReg"; version="1.4.3"; sha256="0c9zxrm5nrxnibrg59gzlz4axnj1c9m6y5wawpak6k41c61q6x2y"; depends=[survival]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; SteppedPower = derive2 { name="SteppedPower"; version="0.3.1"; sha256="1iaaih7pwrs9icn0x7zpqicwnbpgb4azsy0dh238aq2ghawx0p2s"; depends=[Matrix plotly Rfast]; }; @@ -5202,7 +5211,7 @@ in with self; { Strategy = derive2 { name="Strategy"; version="1.0.1"; sha256="0phja1r0qfvcswvw5w1x6ny86p84wkqb029fdqgw10djdm9xp0f2"; depends=[xts zoo]; }; StrathE2E2 = derive2 { name="StrathE2E2"; version="3.3.0"; sha256="10y6bagqg1h57c8g7m837qidrf7wdf8r0jcgqwrcgkr1kbxywfg9"; depends=[deSolve NetIndices]; }; StratifiedBalancing = derive2 { name="StratifiedBalancing"; version="0.3.0"; sha256="0pklnm0q0imdhyzhwyb4i0j441dkk4k6qqlx8d4q2xnl62drqnvv"; depends=[bnlearn plyr]; }; - StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.4"; sha256="0143lkzywlaqfwrxd9m72p20rfnavr7cn8a8m96zvgwa68jdwm8l"; depends=[coin dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; + StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.5"; sha256="0q1d5jar5x2v9bsrfzv73wirgbkvy16ibzq93qv9b6c4zj3q75r7"; depends=[coin dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; StratifiedSampling = derive2 { name="StratifiedSampling"; version="0.3.0"; sha256="190drdcry26rq63i4lzm5s3x79jjjqsngmxgyxwbfgz8hbqj85jx"; depends=[MASS Matrix proxy Rcpp RcppArmadillo sampling transport]; }; StratigrapheR = derive2 { name="StratigrapheR"; version="1.2.4"; sha256="00m0ag5va8r7aq6j2766cv4596qbgjgcfljkbq7vm0p4hx78x51x"; depends=[diagram dplyr reshape shiny stringr XML]; }; @@ -5227,7 +5236,7 @@ in with self; { SunsVoc = derive2 { name="SunsVoc"; version="0.1.2"; sha256="08qmkssxa75q2c8vl4i0560bazqjw1v00h6yl5zjwrxklws2m57p"; depends=[data_table ddiv dplyr magrittr purrr rlang stringr]; }; SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SupMZ = derive2 { name="SupMZ"; version="0.2.0"; sha256="1n81wqacrpk5x6i1pd1zsjivv2jk41743kg1h7gnp0rb3k58vp7r"; depends=[dplyr magrittr]; }; - SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.7"; sha256="1ysfsdzbkldcn7hzxhqikf5h2h9747xhfrirqgr8xx8q81wq989s"; depends=[]; }; + SuperExactTest = derive2 { name="SuperExactTest"; version="1.1.0"; sha256="0i3pk2c2ipnc7mq5w4d4nl2l9pj1ijynm72n4jnlmhrs16ka88i1"; depends=[]; }; SuperGauss = derive2 { name="SuperGauss"; version="2.0.3"; sha256="174gicpk2jwbzg39m44sxp7506cja9cnn95r287sq7049lrj302a"; depends=[fftw R6 Rcpp RcppEigen]; }; SuperLearner = derive2 { name="SuperLearner"; version="2.0-28"; sha256="00any24msgflyagy87nznpfjz5g9v15frqda6c679wa8plx26hjz"; depends=[cvAUC gam nnls]; }; SuperPCA = derive2 { name="SuperPCA"; version="0.4.0"; sha256="0bpcxg9rh3ig5fzml026glws13daf5hiqbvdy7hsriv8y8qlxnfk"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; }; @@ -5281,7 +5290,7 @@ in with self; { TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; - TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; }; + TDA = derive2 { name="TDA"; version="1.8.7"; sha256="0jppqk7h9nq1ysdgkqbywsc313v9gvmnlrmsvidgdc9sa1qxw6di"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDAstats = derive2 { name="TDAstats"; version="0.4.1"; sha256="1zmickqk60vm9rzy67hib835v3c45aqjk441p31vpbvhbiy58nq5"; depends=[ggplot2 Rcpp]; }; @@ -5307,16 +5316,15 @@ in with self; { TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; TIMP = derive2 { name="TIMP"; version="1.13.2"; sha256="1y1bc6wsd32792apsc6qncxbw5y8ww9xlhy9v49mhwbffgzn6llg"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; - TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; - TLMoments = derive2 { name="TLMoments"; version="0.7.5.2"; sha256="0l9d4yafkkn3qdg9ypy3fiqnzxzv8yzxkq6mh1j28g94s4h6lybh"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; - TMB = derive2 { name="TMB"; version="1.8.0"; sha256="158spsz8inxhs3dw6cq2wwkkhvgkfjyyz577s89x08yly7layq2l"; depends=[Matrix RcppEigen]; }; + TLMoments = derive2 { name="TLMoments"; version="0.7.5.3"; sha256="096sr0j4vhlfsaxc565zgw0mjk4sxkl03i7ip3hzcfph1c05yj6h"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; + TMB = derive2 { name="TMB"; version="1.8.1"; sha256="1hzvvx1g5nkmiqwzihj8nir48k7idbw1jvb14ldjk9rsikgpywdl"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TMTI = derive2 { name="TMTI"; version="0.1.0"; sha256="16fa512f8hhfsinn57p98yvw58hjymki7xnvrfz9fidkqva0wm1x"; depends=[dplyr]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; TNRS = derive2 { name="TNRS"; version="0.3.0"; sha256="0r4pd8r7whd9hd47isy3hxzkv9ar3i5hqhixaxr691ck1szkj1f2"; depends=[httr jsonlite]; }; TOC = derive2 { name="TOC"; version="0.0-5"; sha256="0zk6j1yc4gpvkswnfrlyfvqc69wr4q3ys59y7v03fhzwasqj0an2"; depends=[bit raster rgdal]; }; TOHM = derive2 { name="TOHM"; version="1.4"; sha256="15i9hrvxlnwbs9vrsyrfhnm4xwmi97hss2da0xqs1xj5nmzwymqh"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; - TOSTER = derive2 { name="TOSTER"; version="0.4.0"; sha256="0zfalngjjg1p4516r60ma03d2ndw2w417p7bp3b9l4cyv5jy5qjv"; depends=[cowplot distributional ggdist ggplot2 jmv jmvcore R6 tidyr]; }; + TOSTER = derive2 { name="TOSTER"; version="0.4.1"; sha256="1k6m4x5pp06f2nlcqj70gqk0pddwf4l36njkc1rg8zf7fr9x5f3a"; depends=[cowplot distributional ggdist ggplot2 jmvcore R6 tidyr]; }; TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; }; TPD = derive2 { name="TPD"; version="1.1.0"; sha256="1ppj6ppi0lhlz079ygjnwx1l5f36bsi8zax23ssr1w6h4csw748m"; depends=[ggplot2 gridExtra ks mvtnorm]; }; TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; }; @@ -5334,7 +5342,7 @@ in with self; { TSANN = derive2 { name="TSANN"; version="0.1.0"; sha256="1sk9jq6k5qf8k03yhrb2jmazdh8gi2a17pc5m0agcvxiv4lmp5sp"; depends=[forecast gtools]; }; TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; }; TSDFGS = derive2 { name="TSDFGS"; version="1.0"; sha256="1wk1j0bzcapp2pknhiichh947xs6dpkrfr2h7s1vqyzb9a0yajif"; depends=[Rcpp RcppEigen]; }; - TSDT = derive2 { name="TSDT"; version="1.0.0"; sha256="0cscy8g6qab09lgzdpz9s85l7m7v5gnjf0n3h82730xzd50r4za7"; depends=[hash mlbench modeltools party rpart survival survRM2]; }; + TSDT = derive2 { name="TSDT"; version="1.0.7"; sha256="0h2nwlzq6p11735nhkkqz6r7lpmw98bwy9dpdmvj4wqb7c64p90p"; depends=[hash mlbench modeltools party rpart survival survRM2]; }; TSE = derive2 { name="TSE"; version="0.1.0"; sha256="0fzdlryb8m9h6q8w0q42wpphmvm439zxk1imqzmskm48r7w6nm7w"; depends=[]; }; TSEind = derive2 { name="TSEind"; version="0.1.0"; sha256="0xv968a12p9riq5nk82gq1ixglb2077c99i2a5ws6s23xzs1s29h"; depends=[]; }; TSEntropies = derive2 { name="TSEntropies"; version="0.9"; sha256="1bwb3kyhzc6sxhvpagf4vjmh8ghx44lpc9ms4jwrsrzdhcvnfc7l"; depends=[]; }; @@ -5373,7 +5381,7 @@ in with self; { TSsmoothing = derive2 { name="TSsmoothing"; version="0.1.0"; sha256="1m4y6hfw5ghqmvbnha05w6k0abbr08xdcahmh897g68b06vcrjsl"; depends=[ggplot2 gridExtra MASS Matrix]; }; TSsql = derive2 { name="TSsql"; version="2017.4-1"; sha256="0f71q6gqfx4r3ghsmr572cvkpmf2xf7kipf10ii99z1y23dxmsdn"; depends=[DBI tframe tframePlus TSdbi zoo]; }; TSstudio = derive2 { name="TSstudio"; version="0.1.6"; sha256="1r45s4xgc9a2rdh225xzmwr7g6qahmjj7v1a6g7haghnhaq6hv4s"; depends=[data_table dplyr forecast forecastHybrid future future_apply lubridate magrittr plotly purrr RColorBrewer reshape2 scales tidyr tsibble viridis xts zoo]; }; - TT = derive2 { name="TT"; version="0.92"; sha256="0r9cr2jfjxz0sw17whls4m6ilqn5gs1fc9vy2i66abkd95ix73wn"; depends=[data_tree dplyr DT htmlwidgets magrittr purrr]; }; + TT = derive2 { name="TT"; version="0.98"; sha256="0vnj2lmhn8qk3p8m8kvamp1af71iw3l75ds0mm9c8vinw2z4fzg3"; depends=[data_tree dplyr DT htmlwidgets magrittr purrr]; }; TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.8"; sha256="14bws9z57prnbb30ivl8zzyqi9hrj0nhm3m5i249rn2kyzw70gw1"; depends=[e1071 multcomp mvtnorm nlme pastecs relimp reshape rkt stlplus tcltk2 zoo]; }; TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; }; TTR = derive2 { name="TTR"; version="0.24.3"; sha256="11xsmbvmxq2j119j2z58bx1fkkb2xlhmzc35z5fbwr3nchrfz6jd"; depends=[curl xts zoo]; }; @@ -5393,7 +5401,6 @@ in with self; { TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; }; TapeR = derive2 { name="TapeR"; version="0.5.0"; sha256="161qwwqcq94j3h49k6fn6g146hczpaq6vygai5kwl6i8wpdfzc5a"; depends=[nlme pracma]; }; - TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; }; Tariff = derive2 { name="Tariff"; version="1.0.5"; sha256="1mdbc6yyaddkyj617kx93d2737gijh063v8w8jqw4lwmbwyc4a4w"; depends=[]; }; TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.4"; sha256="06bb6570mqzfbjw2qp4bjl4a1bdpwsvcr0vw2y4l1x444m670ds1"; depends=[Rcpp RcppArmadillo]; }; @@ -5415,10 +5422,10 @@ in with self; { TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; }; TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; Ternary = derive2 { name="Ternary"; version="2.0.0"; sha256="1qkf54h3pg2zjbmhas8b2jxizqd2z626qivdpirjypvzp9243458"; depends=[shiny viridisLite]; }; - TesiproV = derive2 { name="TesiproV"; version="0.9.1"; sha256="0a2rr2i7skbg5fdwhcz0wqx7y5cdw6kjgxrml27p2r15q3lvz808"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; + TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; - TestDesign = derive2 { name="TestDesign"; version="1.2.7"; sha256="195j5l6axphkwbjdpj26k2fzs7nbj0kb8gw6271jzwb94b2xfgrb"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; + TestDesign = derive2 { name="TestDesign"; version="1.3.1"; sha256="0qsdsniaw7w2wd7vsfmw5ib86822qdji5r6yyl293dcg7pmrvsa8"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.4.1"; sha256="09r265mmr3bk78pqca30n9bz62p6822mg0nhrfaip2lxhl3bfqcw"; depends=[caret corrplot cutpointr dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; TestGardener = derive2 { name="TestGardener"; version="2.0.0"; sha256="1n38y2b3r0xf44jasga67cg820f1llb52farkv8dnp4v7bzld6zs"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; @@ -5446,14 +5453,13 @@ in with self; { TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.0.0"; sha256="0wzl2jijzga2wc65hjk7v4nlifapc9cg8318jcwiaprndm5gd2cg"; depends=[actuar dplyr ggplot2 magrittr plotly purrr rlang stringr tidyr]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.0.1"; sha256="1hfcqp0iqq93k8jhgnzmf5ha4418pbdqys2dpwmpwyc502kxh4wc"; depends=[actuar dplyr ggplot2 magrittr plotly purrr rlang stringr tidyr]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.2"; sha256="0acgq3npl7l2j3wv9gxlnkajb7sjacnsaxh3p4jrcqvam173bkps"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; - TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; }; - Tinflex = derive2 { name="Tinflex"; version="1.8"; sha256="053w4l5j499brlbbh1bc41nj01j1533ixd9vggmvpkzk7zgdsasy"; depends=[]; }; + Tinflex = derive2 { name="Tinflex"; version="2.1"; sha256="0asvd72rdrk0kkq7d7lynkkmazia4nvj47n4rcqv3cmyd5477gjl"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.2"; sha256="1svjl2va3vpa1m13wmyy3bpx76xxivalwprzbaavwxf8lgk34wgr"; depends=[expm huge igraph rTensor]; }; TmCalculator = derive2 { name="TmCalculator"; version="1.0.3"; sha256="1zrsndpdl9bcl1w6szz8rdzadk7jsbd14fajnndliz9fra1ra7xg"; depends=[]; }; @@ -5482,13 +5488,13 @@ in with self; { TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.7"; sha256="0cwhgphdk0zndnqx0qcq42zajhwvgs9myg9dmm6dnp0ik0g5syqa"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; TreeDiagram = derive2 { name="TreeDiagram"; version="0.1.1"; sha256="03kn9h37wgx300szzxmg21zc5iz3a9v8f2ydzv6dv6rhpa7yn0v5"; depends=[ape cowplot ggplot2 stringr tree]; }; - TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.1"; sha256="08r3lj6jryisskgfzv4yaawmghqx3sk8cjmk0rm2q46ajcf2dihd"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; - TreeDist = derive2 { name="TreeDist"; version="2.3.0"; sha256="1rmd0j8pa7i3q4dqx40gk3kvm0gv8yyrh98ssbslzqsbll84q0y1"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; + TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.2"; sha256="1bwvspjvc1cragbsrc05vhwk0zmfj36r9piqbj0vgahpjb4cswn9"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; + TreeDist = derive2 { name="TreeDist"; version="2.4.0"; sha256="0k1q6abjihksrza5s4b1vzki5pzvjyvkx91ycamqjk4l4gz91xq0"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; - TreeSearch = derive2 { name="TreeSearch"; version="1.1.0"; sha256="0fhkfbq3f4m6lm0kw81wwl809lwv6dq8l9k461v76vqvh7xgs7nl"; depends=[ape cli cluster fastmatch future phangorn promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; + TreeSearch = derive2 { name="TreeSearch"; version="1.1.1"; sha256="1jd7mphdm64dgj73ncksccsx4f3mph9m8sl6lr8yj696yc43xj80"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; - TreeTools = derive2 { name="TreeTools"; version="1.6.0"; sha256="0a6q2fr9frk38378zvd1njkrwwmw943plxmi337wrdvgaikkg5jj"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; + TreeTools = derive2 { name="TreeTools"; version="1.7.1"; sha256="1ckhhxshvb8kd94p6y797kl0n14n6zf9yss0m9jmn03g24xz9iih"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.3"; sha256="0ijkijyhxhjc7202qssa9wnrmwgv4miv5n8jbml4qqj80kcsbdwp"; depends=[nleqslv pracma pROC rms]; }; TrendSLR = derive2 { name="TrendSLR"; version="1.0"; sha256="1x8j2dg3m7b22gva33y4s318a41wl60sz93y868z4j65hp13jb5k"; depends=[changepoint forecast imputeTS plyr Rssa tseries zoo]; }; Trendtwosub = derive2 { name="Trendtwosub"; version="0.0.2"; sha256="12ibxxq58h9w7hlrsxwdirh02casj495rxbfknaggwfx3w30nm56"; depends=[magrittr usethis]; }; @@ -5503,11 +5509,13 @@ in with self; { TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.0"; sha256="1ak7w10qss1jlf8gy4sri678nqcw6rc79kwr6anqcjxick1000j9"; depends=[hash]; }; TruncExpFam = derive2 { name="TruncExpFam"; version="1.0.0"; sha256="0059afyfvzliwpw4l1846yxcpqqdy9c2kk0xa0fl5nxh89c2hr7v"; depends=[invgamma rmutil]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; + TrustVDJ = derive2 { name="TrustVDJ"; version="0.1.0"; sha256="154fawx32v2gdvfdyssj04h1y0q2zc2wn4ww4nzaf0nlwbvc2z6v"; depends=[Biostrings data_table rvest]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-4"; sha256="1ly09pll86zkn6m8rc6d66f3d7hf98fiij0psaigq6wdgf5an8ig"; depends=[doBy xtable]; }; TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.4"; sha256="1zx6gm0s0nardhb3xm3c53pd46kq6grsknpldnjjfhn3029a3nr7"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; }; TunePareto = derive2 { name="TunePareto"; version="2.5.1"; sha256="025457qm8blj5jc59qx1wvlcw21b4v9371hlrcf9gkvisksjqvf1"; depends=[]; }; TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; }; + Tushare = derive2 { name="Tushare"; version="0.1.4"; sha256="0am3bq62ar5p5nv8gapbvh4ix150pskdrhda48lmcg0ii3l0qh9g"; depends=[data_table forecast httr tidyverse]; }; Twitmo = derive2 { name="Twitmo"; version="0.1.2"; sha256="0hr2gndrcsd4r4jxyzg1jbjbn1zslv8z5ny3xh42hda93866909d"; depends=[dplyr jsonlite ldatuning LDAvis leaflet magrittr maps plyr quanteda quanteda_textstats readr rlang rtweet stm stopwords stringi stringr tidyr tm topicmodels]; }; TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; TwoArmSurvSim = derive2 { name="TwoArmSurvSim"; version="0.2"; sha256="0isb1nmm6hxwn6p52an1axj30ilkr5c8xi86zx2b8acivdz2xr12"; depends=[blockrand dplyr simsurv survival]; }; @@ -5565,9 +5573,8 @@ in with self; { VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; - VARDetect = derive2 { name="VARDetect"; version="0.1.5"; sha256="0cj4cc2kys6hblyh88fc64aaz4ln7961y48qkffrmv3367wr1ypj"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; VARMER = derive2 { name="VARMER"; version="1.0.0"; sha256="0qym31jpmb2dyrqsk1s6wp1c3b15mf79lrrk46p6hkmdddkxqgnj"; depends=[cluster deldir gstat hydroGOF Metrics pracma raster rgl sf tictoc zoo]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="1.9"; sha256="18j73wm22bjvf2y0c09bfmdyx4x2gd0jhfcqhbk1sgsk24zjr63z"; depends=[]; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="2.1"; sha256="1cxp80i5160c6kx666nl0gxs8ypfmkzxr2gqph5a9v6ibiq801sj"; depends=[]; }; VARshrink = derive2 { name="VARshrink"; version="0.3.1"; sha256="09hysmxxawcbyfx6bia546aqydryl2r5p3ai7bvl6ghdckw5mnpl"; depends=[ars corpcor MASS mvtnorm strucchange vars]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VARtests = derive2 { name="VARtests"; version="2.0.5"; sha256="0gmm2qrrl4v5vx0nhiwq5brvanhybpb2q0zlf4dihramhjjbwyar"; depends=[Rcpp RcppArmadillo sn]; }; @@ -5676,11 +5683,11 @@ in with self; { WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; Wcompo = derive2 { name="Wcompo"; version="1.0"; sha256="1rd7y86q8qi7w9878ng0zdk3zpxnjyzpmrm2mj5lm60hkd72xyrw"; depends=[survival]; }; WeMix = derive2 { name="WeMix"; version="3.2.1"; sha256="0y7xw7ardij56x4s2ls1vfa8a3pjl14jj5y987p3xx8pca409pp6"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; - WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.1"; sha256="1nllvrwk7lqdvghfzjvvjihsymn36rphfpfwn3j6mlzq2v2vawra"; depends=[brew digest fs ggplot2 scales testthat xtable]; }; + WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.4"; sha256="0g8xr9hjr64fq7671k0d824p2gsh57n69aqd64hjf8nhf019y8dv"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.4"; sha256="1rgf9s80hk35baiknrwgnqnhxssrcxdansgpvpyhqv07bqd472nn"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.6"; sha256="1gw6191v9sgycis3vyjznaaiyhmp0j23h9k8g8adchpyss7017ab"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; - WeibullR = derive2 { name="WeibullR"; version="1.1.5"; sha256="1dkvdja7zm1v7z9011qms9k84wqywbl7k64jlfrp6fn2k0y6nxgj"; depends=[Rcpp RcppArmadillo]; }; + WeibullR = derive2 { name="WeibullR"; version="1.1.10"; sha256="0hbqlik5wj9q4ncyvbsyrx0f7lf34wkv31q858plbbj95xmadbd0"; depends=[Rcpp RcppArmadillo]; }; WeightIt = derive2 { name="WeightIt"; version="0.12.0"; sha256="1x71ifvxl1zn1iaapfz8sscag2h4yim3ycqiink02sy3sfl0hj4n"; depends=[backports cobalt crayon ggplot2]; }; WeightSVM = derive2 { name="WeightSVM"; version="1.7-9"; sha256="0467rj0qvlyzzpjdxbwwa8gzyalifvjza4pvakbrl7b332v36dwq"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; @@ -5708,12 +5715,12 @@ in with self; { WriteXLS = derive2 { name="WriteXLS"; version="6.4.0"; sha256="1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4"; depends=[]; }; WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; - XBRL = derive2 { name="XBRL"; version="0.99.19"; sha256="0l25lfy8vzkgdq7i4bafh8b1246f8p2a6sy7c4kswzz4bnxnrihc"; depends=[Rcpp]; }; + XBRL = derive2 { name="XBRL"; version="0.99.19.1"; sha256="0mwpk84kp6r7f6fmlby0ka58fj50y592afxzp0wcrzmx65abp7md"; depends=[Rcpp]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; XICOR = derive2 { name="XICOR"; version="0.3.3"; sha256="0xhb58bk3r8spd8ah3r7568np27nlrc18cswcsgavaikjpfda9vr"; depends=[psychTools]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.5"; sha256="1b8nr8mjxi8bq4b2c191n4gpjq1fx2vqblp5kb3zmk18gzsjwp4p"; depends=[rJava]; }; - XLS = derive2 { name="XLS"; version="0.0.9"; sha256="0c9x1rlh7q0x1m57dg4knbvdhqg3mffnwcd50yr29a4h6dy7jjf9"; depends=[mpoly rlang]; }; + XLS = derive2 { name="XLS"; version="0.1.0"; sha256="0a4jbfz9x9rn4k5v7qh3r9p7pal4piqg01469237lkq00m3lijy5"; depends=[mpoly]; }; XML = derive2 { name="XML"; version="3.99-0.9"; sha256="02ba407ddgil4jbjzrbw756hlxzy3mihc5dk1ngcbvsp67gxw5cw"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; @@ -5743,7 +5750,7 @@ in with self; { ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZVCV = derive2 { name="ZVCV"; version="2.1.1"; sha256="0gc76j9i8fkm2v638nyzzb1qxl4zmapbspkkaffb8gi5qyjja448"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; - Zelig = derive2 { name="Zelig"; version="5.1.7"; sha256="1x1zcmlhbbzxbb0y91ynz50nfhpki913lnmhcpmlds7drcbbirnk"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; + ZetaSuite = derive2 { name="ZetaSuite"; version="1.0.0"; sha256="0933ri4dz0nlxkgz0rqvp5yp38fikbdncb8bgviw7zgbfglaisgr"; depends=[dplyr e1071 ggplot2 gridExtra mixtools RColorBrewer reshape2 Rtsne scater]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; }; Zseq = derive2 { name="Zseq"; version="0.2.0"; sha256="06dndi2b1q79bmxax11bv0l5ifcz1mhpvbn90y6a6xymrgcq0ivi"; depends=[gmp]; }; @@ -5761,7 +5768,6 @@ in with self; { aTSA = derive2 { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.1"; sha256="1jg19ns3mxfycc11i2c152d83n4kqz3dd6d269sijnxrw80kzjki"; depends=[party randomForest rpart]; }; aaSEA = derive2 { name="aaSEA"; version="1.1.0"; sha256="0him4r8qyp0xssgrmdxjs45yn4d28h5anv4jyxxbbs9phb0m6j3h"; depends=[Bios2cor DT Hmisc magrittr networkD3 plotly seqinr shiny shinydashboard]; }; - aba = derive2 { name="aba"; version="0.0.9"; sha256="1qnhnbbd8iir686gc48fld62pd4da39flf2djvvif2bxcvwl8y7a"; depends=[broom dplyr generics ggplot2 glue magrittr purrr rlang stringr tibble tidyr]; }; abbreviate = derive2 { name="abbreviate"; version="0.1"; sha256="1cvjdbi17qz8gr5898zchm5fyz4n51z66lwps25v8a9mhwab8imi"; depends=[]; }; abbyyR = derive2 { name="abbyyR"; version="0.5.5"; sha256="1vldnd3dg89aj6a73nhirirqddbfdrnzhb5m3679i60sark8nk6r"; depends=[curl httr plyr progress readr XML]; }; abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; @@ -5774,12 +5780,12 @@ in with self; { abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; }; abdiv = derive2 { name="abdiv"; version="0.2.0"; sha256="053l94br8sdy30078ssncq5i5zvdxa3m72ymbwbh0cm3zmsljj29"; depends=[ape]; }; abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; }; - abess = derive2 { name="abess"; version="0.4.0"; sha256="07cmny3mzpkr7j4zqkg2vag7mmzxin257bwnq3vzisa5dvw8mf1w"; depends=[MASS Matrix Rcpp RcppEigen]; }; + abess = derive2 { name="abess"; version="0.4.5"; sha256="0lv9cggbc33xpc3h6a8nsa72r7217lb4qzwvxmy7kg4f6ny1r0rs"; depends=[MASS Matrix Rcpp RcppEigen]; }; abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; }; abglasso = derive2 { name="abglasso"; version="0.1.1"; sha256="0h8p912l0202wyr5vjsbzw5mr70m56ab39wv833g6c4c3187479y"; depends=[MASS pracma statmod]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.2"; sha256="0lmf4va8qnzwg698i2h4fcwvd6dhsgdkqsfh41aa3wg1flimhsr7"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; - abn = derive2 { name="abn"; version="2.6-0"; sha256="0fr5pyc43hly5ry5bbygibbh9mnql7vl4r5qz42d0ry4hahyxa4w"; depends=[doParallel foreach lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; + abn = derive2 { name="abn"; version="2.7-0"; sha256="13i2f4lw1rzj89bp31sn03prq1bqj7bsxwdr8z2ql02yqks9phg0"; depends=[doParallel foreach graph lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abstr = derive2 { name="abstr"; version="0.4.1"; sha256="0ykds1l7bi0h06fjp0d6xshl8ar05n7ccmjbl7hz02l2v7ncfa6v"; depends=[jsonlite lwgeom magrittr od sf tibble tidyr]; }; @@ -5788,11 +5794,11 @@ in with self; { abundant = derive2 { name="abundant"; version="1.2"; sha256="15m3ngj5aipjg961yy5kvdg9xlfcpliw30dq6gchzxabhnfzcipd"; depends=[glasso]; }; academictwitteR = derive2 { name="academictwitteR"; version="0.3.1"; sha256="055n0y8g2ibai5zyvw9cqbi0l1zi792cgf65jhy6mrf7j6lgrzhw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; - accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; + accSDA = derive2 { name="accSDA"; version="1.1.1"; sha256="104xdz63mnibh6827xm0pfr9zbhbi2a7iw4m1x27xjqi7zqvbky6"; depends=[ggplot2 ggthemes gridExtra MASS]; }; acca = derive2 { name="acca"; version="0.2"; sha256="0h9dyzd1pbr4rvxqz69vlfmbibcd1n72qqgjvci7fdjjvfq2mc9p"; depends=[ggplot2 plyr]; }; accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; }; accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; - accept = derive2 { name="accept"; version="0.8.3"; sha256="0qn4lm6bk0z2iijwsfbymx1c9y39988fw124ncgmlrgw5kv80b7x"; depends=[dplyr reldist]; }; + accept = derive2 { name="accept"; version="0.9.0"; sha256="13kx8fbnbpasjklgbq2rf4n73j2s8rvy5v77ywqhfzln24937qgh"; depends=[dplyr reldist]; }; accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; }; accucor = derive2 { name="accucor"; version="0.3.0"; sha256="1byhfh9lskgpi8sx6kb7prh88a2jglrjpq206rmh98hqd3r23n5j"; depends=[CHNOSZ dplyr nnls readr readxl rlang stringr tibble writexl]; }; ace2fastq = derive2 { name="ace2fastq"; version="0.6.0"; sha256="09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic"; depends=[stringr]; }; @@ -5820,12 +5826,13 @@ in with self; { activityCounts = derive2 { name="activityCounts"; version="0.1.2"; sha256="0zgxr2sk3a8kmygfxx1p5hnrfwdkxx7php6jlrhm8wv6052ck8jz"; depends=[lubridate magrittr seewave signal tibble]; }; activityGCMM = derive2 { name="activityGCMM"; version="1.1.1"; sha256="0r11z61h8fs5dcm3yfr2njbrbh4pv7xlbqx5zngmrknhv407498z"; depends=[circular mclust overlap runjags]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; - actuar = derive2 { name="actuar"; version="3.2-1"; sha256="1avqgkls4xvwgfr6j7g2f7p474rlpi82q5aksw8nzf8wcyp7592f"; depends=[expint]; }; + actuar = derive2 { name="actuar"; version="3.2-2"; sha256="0dhpaivyga0jwvw1csagbx74biy9jfkw4a8sa871579njxl1x7p1"; depends=[expint]; }; actuaryr = derive2 { name="actuaryr"; version="1.1.1"; sha256="08dzn565ax2l2hrn2m32k6magjbskybywl0hsgkg11nrjvkznwnx"; depends=[crayon dplyr lubridate magrittr purrr tibble]; }; acumos = derive2 { name="acumos"; version="0.4-4"; sha256="15i4xbcdk5vxjrgac32zh4439v0vmabnw3jvsmxiipap5frp7rpi"; depends=[httr jsonlite RestRserve RProtoBuf Rserve yaml]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; adaHuber = derive2 { name="adaHuber"; version="1.1"; sha256="0giypz04m9anssa2r3hlf95lnj74i3ir48p5j898i2z1gmf8m14w"; depends=[Rcpp RcppArmadillo]; }; adabag = derive2 { name="adabag"; version="4.2"; sha256="109wrl1pwvmyv2l909hrvk7dg4aa9pv449mvdycp50zwrsw9w0a7"; depends=[caret doParallel foreach rpart]; }; + adace = derive2 { name="adace"; version="1.0.1"; sha256="1zkvfbvqwxh4k5a0l06khdblm16q7knfcrxfzpmck8053z7kilgr"; depends=[pracma reshape2]; }; adagio = derive2 { name="adagio"; version="0.8.4"; sha256="0ihv05402iq003m0338f85pnqnlnrmx0pf1mg8cz9sgi5h98mbnl"; depends=[lpSolve]; }; adamethods = derive2 { name="adamethods"; version="1.2.1"; sha256="150awbd3skb1mqca18bqjykhyycqw8crviw66s6qrcnmcsbk77pj"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; @@ -5837,7 +5844,7 @@ in with self; { adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; - adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; + adaptr = derive2 { name="adaptr"; version="1.0.0"; sha256="1h23jk5z65z70l09l8kznsqznp8v7zjkgwpc9xgy3ghp8izlfnp3"; depends=[]; }; adass = derive2 { name="adass"; version="1.0.0"; sha256="1g702pg335q9jwgdygb7n364ibad6z27fcd9yfim8gi4fcpjwlkq"; depends=[fda matrixcalc mvtnorm plot3D Rfast SparseM]; }; add2ggplot = derive2 { name="add2ggplot"; version="0.3.0"; sha256="0c94i1cfp2pvplvxmfvvz2fyj026r1jnax05mrzrc7ppnqzy25y0"; depends=[ggplot2 magick magrittr RColorBrewer zeallot]; }; addScales = derive2 { name="addScales"; version="1.0-1"; sha256="1bw4ljyyswdhqyir9i6lj0mg9lm6ry4zpqp2h6w2bpk37rvs1w38"; depends=[lattice]; }; @@ -5863,25 +5870,26 @@ in with self; { adepro = derive2 { name="adepro"; version="3.2.0"; sha256="0sw42yld4bjgfiqm957ply605zsj66mmwvkzi73hsbkk31w1k5fb"; depends=[audio Cairo dplyr gclus haven jsonlite MASS readr rlang seriation shape shiny shinyBS shinyjs shinyWidgets TeachingDemos tidyr V8]; }; adept = derive2 { name="adept"; version="1.2"; sha256="1dpfmfnqzci6p7wqwpp8y0cisx11r8kdsqjm85skb512n35m0i3a"; depends=[dplyr dvmisc magrittr pracma]; }; adeptdata = derive2 { name="adeptdata"; version="1.1"; sha256="0wzavbwc1slyr3wh5jkapghpa748rc86pbw5b4gcxki73r08r7j2"; depends=[]; }; - adespatial = derive2 { name="adespatial"; version="0.3-14"; sha256="1gxz9jc8br34s7yfkwnbijpnix5gbsr37ihn2xjj6ypdq54pbvx2"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; + adespatial = derive2 { name="adespatial"; version="0.3-16"; sha256="08d830c36738v98rn4hn95y01045v2xzyf43cy7aqckapkhdcywq"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.6"; sha256="06sk68580i7jg9lk4jj64ns04y4q6amzsh0k7nxhfdib107yajnp"; depends=[]; }; adheRenceRX = derive2 { name="adheRenceRX"; version="1.0.0"; sha256="19kimj88dmcc8mq3s4l7pph9jz8p57gbjyn0pn5zkrcjdrwncslm"; depends=[anytime dplyr lubridate purrr Rcpp rlang tidyr]; }; adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.9.3"; sha256="0njw38vcdm02sni193nj10mpv7hiklpamrkjlz5bnhjxx9mvf4cl"; depends=[awsMethods]; }; adiv = derive2 { name="adiv"; version="2.1.1"; sha256="08cvnj62vm2vi73qrv87hxch4fsl5ab8fp5lcm143sp0f9n8daa6"; depends=[ade4 adegraphics adephylo ape cluster FactoMineR lpSolve phylobase phytools rgl]; }; + adjROC = derive2 { name="adjROC"; version="0.2.0"; sha256="0ipvp7f7asg8pbzbm3rnn8hp20gs3aqispvagddjw1yd39h0zgrk"; depends=[ggplot2 ROCit]; }; adjSURVCI = derive2 { name="adjSURVCI"; version="1.0"; sha256="0nv6m7ds57d0h44d745s0424ssrgn39ihd294dgrzrpmh8gxhq95"; depends=[Rcpp RcppArmadillo survival]; }; - adjclust = derive2 { name="adjclust"; version="0.6.3"; sha256="07x9zpq3j47jhf4jaddr98bb07l1l743v3ic4b30kk3rbcrpqp7p"; depends=[capushe Matrix Rcpp RcppArmadillo sparseMatrixStats]; }; + adjclust = derive2 { name="adjclust"; version="0.6.4"; sha256="186vj67az1r8gqrls8wn18dkx5mjrfj5879rrgvj6na4xl48vx3c"; depends=[capushe Matrix Rcpp RcppArmadillo sparseMatrixStats]; }; adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; - adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; + adlift = derive2 { name="adlift"; version="1.4-3"; sha256="1lj99vm014fglw57qc00wzxbx4kzb4ky5iisqd756dfg3k41wa55"; depends=[EbayesThresh]; }; admiral = derive2 { name="admiral"; version="0.6.3"; sha256="0b40v2y09ia8fhl70i261dmhl18vcn9dy5crr2hb44dnz3rb533c"; depends=[admiral_test assertthat dplyr hms lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiral_test = derive2 { name="admiral.test"; version="0.1.2"; sha256="0p5qv43cbyyxj2i6awkayrfk9rc07h55ck9xpknyd5nf9c08gd1y"; depends=[dplyr magrittr rlang]; }; - admisc = derive2 { name="admisc"; version="0.25"; sha256="0cf8dy0mi3ynm2ic8jp0qi1samyzashwlzz0l64izqqv2s4hpyzp"; depends=[]; }; - admix = derive2 { name="admix"; version="0.3.2"; sha256="0si2avjqw6rmv2ndsj1ppmqkafnsjx06m2h4jxfrwf2kxfp2rrn1"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; + admisc = derive2 { name="admisc"; version="0.26"; sha256="19zkwyp8gvq8f74midmwld4azx44sbqxqx9mgs726i6dhnls6821"; depends=[]; }; + admix = derive2 { name="admix"; version="0.4.0"; sha256="1vfga2l6yay4l8q53siibf1ljr77fmcgbddlag414jmv2awckr0c"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; - adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.0"; sha256="1i5bc6lmsynfyhz7kr7zv2nx5ixlnkh6zl5grr2yh0n5g44m19nr"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; + adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.2"; sha256="0p1c2hya3jqsvfvrx8a3fgs995snmkvxh9gv5qpmk312wm2gwb09"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; adoptr = derive2 { name="adoptr"; version="1.0.0"; sha256="08d2fsqh5vczfr9cc8l554p6f0x85g58i5zg5j2m0chlmcispfk2"; depends=[glue nloptr]; }; adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; ads = derive2 { name="ads"; version="1.5-5"; sha256="1i6cv296i5di9irmch9wg6bpxg7s026axspq0mhcwrfyqnw8xnxs"; depends=[ade4 spatstat_geom]; }; @@ -5893,7 +5901,7 @@ in with self; { adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; - afex = derive2 { name="afex"; version="1.0-1"; sha256="1k04n6gwk2n8kg0l3yk5j3wrqgkv5f6w04yjpif9y451hx5w7svg"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="1.1-0"; sha256="0h8zqv82dqll19l3p89a2csvgnx8ayb2bajq7b35a8svhj427zax"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affinity = derive2 { name="affinity"; version="0.2.5"; sha256="0nfh3g8nifv5773pihgzxh62wa837i2dk1kgf15z28cb5xfj2y8h"; depends=[raster reproj]; }; affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; @@ -5901,6 +5909,7 @@ in with self; { afpt = derive2 { name="afpt"; version="1.1.0.1"; sha256="0cg5cdm9nl1hs6f3j0ljpw4bkqvh3ksyj615b9nnbqs5k28lyds9"; depends=[]; }; aftgee = derive2 { name="aftgee"; version="1.1.6"; sha256="1sq6d6zkr4whg61phz22gb5zh7wxg2il39w2g5s812i4hiipqj4r"; depends=[BB geepack MASS survival]; }; afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; + ag5Tools = derive2 { name="ag5Tools"; version="0.0.1"; sha256="1390acslndzvvhdc6pk9cfvhval1wqgiic353f03qv0rvhxbyzad"; depends=[fs reticulate terra]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; aghq = derive2 { name="aghq"; version="0.4.0"; sha256="12zzadx0qfh5wg8092w777c9ymd1m6gq3gwmfp9pf9bn3s31vij3"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; @@ -5940,7 +5949,7 @@ in with self; { airr = derive2 { name="airr"; version="1.3.0"; sha256="1lpzd8qz1dr6kkrbc8lnqbknxyamv4y6ahad5w9q5dgwdwn0kpym"; depends=[readr stringi yaml]; }; airt = derive2 { name="airt"; version="0.2.1"; sha256="1az5fd9zr6lgmcim4v6rzckl9yyw9myvhmzs76n71864gnzkbna4"; depends=[dplyr EstCRM magrittr mirt pracma rlang tibble tidyr]; }; ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; - akc = derive2 { name="akc"; version="0.9.6"; sha256="0q2qvr1qq0vmc8hv7ryzw6z2c9vsk78xrx2dzyw0jd4yk0vxiaf7"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidyfst tidygraph tidytext]; }; + akc = derive2 { name="akc"; version="0.9.7"; sha256="0wyi7g1s0j366gj33v3rhlv3hdj5rakb6lmhp77l9zn0bbgmq38m"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidyfst tidygraph tidytext]; }; akiFlagger = derive2 { name="akiFlagger"; version="0.3.0"; sha256="08z5jvigzvl3af17dd8l6zil0s694i22x0a7xvb3n4fvg6fargz4"; depends=[data_table dplyr shiny zoo]; }; akima = derive2 { name="akima"; version="0.6-2.3"; sha256="0hvaa2n1r82fd60ksx4n4ia02fbm67fqdijfy2b2xywq8861i6rv"; depends=[sp]; }; akmbiclust = derive2 { name="akmbiclust"; version="0.1.0"; sha256="19dj12vlry6f3agzrnshx2c4rpa2h7dlx2138r49jjy9sm48pyfw"; depends=[]; }; @@ -5954,6 +5963,7 @@ in with self; { aldvmm = derive2 { name="aldvmm"; version="0.8.4"; sha256="1dnmm3driw8ybqd10zlsaink5zh5f0pj2qqxda7y34s9shz7yqh9"; depends=[checkmate numDeriv optimr]; }; alfr = derive2 { name="alfr"; version="1.2.1"; sha256="1ldq8gvgqjjabn86hdqb6hxch8x4hvr6djv5ly4mx039dipc8jxi"; depends=[httr jsonlite magrittr stringr]; }; alfred = derive2 { name="alfred"; version="0.2.0"; sha256="1y0s6vn0piq4wnlc6v143va0qkklm67aa653lwgq926nfnjxz6as"; depends=[curl dplyr httr jsonlite lubridate magrittr rlang tibble tidyr]; }; + algaeClassify = derive2 { name="algaeClassify"; version="1.3.2"; sha256="1ggxyj79ddc3c0q3fn1dbx5rmvq5jqrza9dzswwb9sfpfb8acdfh"; depends=[lubridate]; }; algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; @@ -5968,7 +5978,7 @@ in with self; { alpaca = derive2 { name="alpaca"; version="0.3.3"; sha256="1mpyy9wg2wvznkd9vgzaxyz87py9zmlrlrzrhqbmqiwqh5y99wnq"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; - alphahull = derive2 { name="alphahull"; version="2.3"; sha256="0vir69bgydkb3l47kn0fs8x6nkh6vgbhrjsfhf1gnzvwj66iig29"; depends=[ggplot2 R_utils sgeostat spatstat_geom spatstat_random splancs tripack]; }; + alphahull = derive2 { name="alphahull"; version="2.4"; sha256="1kpip0zb34xi057qn3zzk0fnb3l1zr580i815wljbqwswxvncczj"; depends=[ggplot2 R_utils sgeostat spatstat_geom spatstat_random splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.3.1"; sha256="0d3rxvsb0yl900dlpr1v5w56z8ci9rbp5dlwx7l2laifyprsns2i"; depends=[geometry rgl]; }; alphastable = derive2 { name="alphastable"; version="0.2.1"; sha256="01gwrcxlj2jlb8axs5qmrsixk3a8b7044ypyjg6dpdcxfbcf5fvp"; depends=[mvtnorm nlme nnls stabledist]; }; alphavantager = derive2 { name="alphavantager"; version="0.1.2"; sha256="0c97p8njga4xffvsa0kj0s4y0agjr44y9bnjxs5phm1ldcqjs0yj"; depends=[dplyr glue httr jsonlite purrr readr stringr tibble tidyr timetk]; }; @@ -5978,20 +5988,21 @@ in with self; { altair = derive2 { name="altair"; version="4.2.1"; sha256="1132q369yxrfix76xizw22rpbixqbfsf23c3p1m751h536hmx2f6"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; altfuelr = derive2 { name="altfuelr"; version="0.1.0"; sha256="0k3f4wr9gbn5aig40xg817hrnz2lx8g4adyy18s59fs8dw03v87h"; depends=[dplyr httr jsonlite lubridate magrittr purrr stringr]; }; altmeta = derive2 { name="altmeta"; version="4.0"; sha256="17cyiydf4n5j64izj7jph2v43h4x9kfd5b0x6m0ik5ci2aw8xzr5"; depends=[coda lme4 Matrix metafor rjags]; }; - amanida = derive2 { name="amanida"; version="0.2.0"; sha256="164ln3dagmdcbqbgywhgxkq0nbnf83p8hw16bvkdhydhzg82s021"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse webchem]; }; + amanida = derive2 { name="amanida"; version="0.2.3"; sha256="0vi1x43s9xbr6ggx6km342qfqn2yppinsgn50gm73vckvb8672gs"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse webchem]; }; amanpg = derive2 { name="amanpg"; version="0.3.3"; sha256="0hmdc4kiaxa41hvva93dl48c1lbwih24pjpy569n0cg1zq16fc9x"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-18"; sha256="0zpcb73w413na23f6giml9311jh0j0y766w2fh9i40d2h7bbvyvs"; depends=[]; }; amapGeocode = derive2 { name="amapGeocode"; version="0.6.0"; sha256="0j04hg2ks7578fiaymj295yll77xm6x5svmxx6m4n0djky8j10n1"; depends=[data_table furrr httr jsonlite magrittr sjmisc xml2]; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; }; ambient = derive2 { name="ambient"; version="1.0.0"; sha256="0b8nd8g0ydglql2cwi4wmlnv5kyid8q51vz0p08f9m5x73k3z2bd"; depends=[Rcpp rlang]; }; - ambiorix = derive2 { name="ambiorix"; version="2.0.0"; sha256="106lcrg4pj6zniib5zm8bp2s94lhwr9nmx2lxv684vg145m4pia5"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; }; + ambiorix = derive2 { name="ambiorix"; version="2.1.0"; sha256="1831i5fv966cghp5xgq71wqzldlajyjj2p4nkhbw007w2dcn0y21"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; }; amelie = derive2 { name="amelie"; version="0.2.1"; sha256="0f4rfijskrw9nmyzbrbz6yfa9d0a5cxjw8n9c36hc6jvh377i7k7"; depends=[]; }; amen = derive2 { name="amen"; version="1.4.4"; sha256="00c4dw6s8yxagbgadvcpw4ima89aqjqgpm3460zi97xwq9404f1d"; depends=[]; }; amerifluxr = derive2 { name="amerifluxr"; version="1.0.0"; sha256="099vv1axgp4jfi9ic4rqsdcv8a5dz1z0zdmdx8r8h474p3jdqm7c"; depends=[heatmaply httr jsonlite memoise RCurl readxl]; }; amerika = derive2 { name="amerika"; version="0.1.0"; sha256="1c0bi0wrc89d0zv0wzmdvka66mcikgi1w4gn1i22mvg5bivhzaqx"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; - ammiBayes = derive2 { name="ammiBayes"; version="1.0-0"; sha256="1j5zr1yk2qwba1j5kjc48f9jygi6zn6d33m13jarmczn8y6nxf22"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; + ammiBayes = derive2 { name="ammiBayes"; version="1.0-1"; sha256="1m60pg84nhrlhj3kgja766xms2i9dkx0r5vggskfx82mynnlhj9y"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; ammistability = derive2 { name="ammistability"; version="0.1.2"; sha256="0ak20y5iv1cg5y06srdlfk5qp5c463ky41l350shnqpq550azy11"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; + amp = derive2 { name="amp"; version="1.0.0"; sha256="11132s3bdjcldvpws7yc1w4nifvq0iaavdda2zj0wwmi4rw5xx5c"; depends=[dplyr ggplot2 glmnet MASS rlang SuperLearner tidyr]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; amt = derive2 { name="amt"; version="0.1.7"; sha256="04sjvb4zvalv22q90n50rdkkj002vr5shhpgxacaac7hy0pgpcyc"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; }; @@ -6015,6 +6026,7 @@ in with self; { animaltracker = derive2 { name="animaltracker"; version="0.2.0"; sha256="1zv2nj4wfskz1lxfgw8l4gyrlv418drk8zl4cw55i5na6a39shcv"; depends=[dplyr forcats geosphere ggplot2 httr leaflet leaflet_extras lubridate maptools raster rgdal scales shiny shinyBS shinycssloaders shinyjs shinythemes shinyWidgets sp tibble tidyr zoo]; }; animation = derive2 { name="animation"; version="2.7"; sha256="0sg4sz5lkn85yzpcg22xkr7921cbnh7g74nlp9imjy7c0hdqyhc8"; depends=[magick]; }; animint2 = derive2 { name="animint2"; version="2022.1.25"; sha256="0c4pb0wzd84a79lbqwjl87q5d3vainhxr9ifq5k05rxhdizpjwd0"; depends=[digest gtable knitr lazyeval MASS plyr reshape2 RJSONIO scales tibble]; }; + animl = derive2 { name="animl"; version="1.0.0"; sha256="0rc82y5z1jkd9bfq2dnn50sr2lf6vhs7yyn1fwfn13krczc9zcbp"; depends=[av data_table dplyr exifr imager jpeg keras pbapply reticulate tfdatasets]; }; anipaths = derive2 { name="anipaths"; version="0.10.1"; sha256="14shy474795mivxvn0vyfgzwabvhxafgjazcwhz2250smjzdhw03"; depends=[animation crawl dplyr ellipse ggmap ggplot2 igraph lubridate magrittr mgcv raster RColorBrewer scales sp stringr tidyr tidyselect]; }; aniview = derive2 { name="aniview"; version="0.1.0"; sha256="1klakkmdk4xllaxd0pllvxi4396n6rz2idz55niy91mp0fhcjhwf"; depends=[htmltools jsonlite]; }; anndata = derive2 { name="anndata"; version="0.7.5.3"; sha256="115v7gdilayd18hd519vzkixp2s6rvvrd1inc1i6amn7d0spy8r1"; depends=[assertthat Matrix R6 reticulate]; }; @@ -6031,13 +6043,13 @@ in with self; { anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; anticlust = derive2 { name="anticlust"; version="0.6.1"; sha256="1f06968i5hpfavcwmcqij0mb13jhp02gbkqiijilyiz2kc8p0nfc"; depends=[Matrix RANN]; }; antitrust = derive2 { name="antitrust"; version="0.99.25"; sha256="0f4alzr4nmjhxwk3c6mi5vrs2i20dambpc9zfkxf04rxbcw2znvy"; depends=[BB numDeriv]; }; - antiword = derive2 { name="antiword"; version="1.3"; sha256="034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j"; depends=[sys]; }; + antiword = derive2 { name="antiword"; version="1.3.1"; sha256="123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2"; depends=[sys]; }; anyLib = derive2 { name="anyLib"; version="1.0.5"; sha256="1x9x58hhkkwdskmgdjv94ynh811n9w0752hh4214adl1qpn576vm"; depends=[BiocManager curl devtools httr withr]; }; anybadger = derive2 { name="anybadger"; version="0.1.0"; sha256="1aa09v5k5nlvhlir8saa5gnrq7cb1djbdc8y85cjgb3skay94hzv"; depends=[config glue magrittr purrr R6]; }; anyflights = derive2 { name="anyflights"; version="0.3.2"; sha256="0531cqamk8sqb2df3brwyak2rs65mc5r3vsywc6xrr1nlaw62zd6"; depends=[curl dplyr glue httr lubridate progress purrr readr roxygen2 stringr usethis vroom]; }; anytime = derive2 { name="anytime"; version="0.3.9"; sha256="0jjpqynai5nd7mfy1smb44356f3d5bmpxhs1i9x9jw5c959c35hh"; depends=[BH Rcpp]; }; ao = derive2 { name="ao"; version="0.2.1"; sha256="17qvqvbhybp2icwna7iwib65mfcjxf1dyx38vahgzasd9w8wrfck"; depends=[ggplot2 optimx R_utils]; }; - aod = derive2 { name="aod"; version="1.3.1"; sha256="1g03ajhs6bid80i83xn3917abhymzgrydqx86wxxpkqga018hb85"; depends=[]; }; + aod = derive2 { name="aod"; version="1.3.2"; sha256="0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1.1"; sha256="1kdmgzd5nkzm0awdjls6fc8p9hxsph9ha9k1jxbppdi4i6f0i7rv"; depends=[boot lme4]; }; aof = derive2 { name="aof"; version="0.1.2"; sha256="0552i5wvm04dq8a8y1x36sprc9cbx6k7c3bmsgqxm71dpsxajb0i"; depends=[bcpa]; }; aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; }; @@ -6049,7 +6061,7 @@ in with self; { apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; }; apache_sedona = derive2 { name="apache.sedona"; version="1.1.1"; sha256="1bsxyb1303s907w5h7m7wacgsjjgb1y35zvkpmn1ymz0zsfbad4p"; depends=[DBI dbplyr dplyr rlang sparklyr]; }; apc = derive2 { name="apc"; version="2.0.0"; sha256="0vh6iyxm46k8sfa1xgz0y6m619snnm8s072kml5qgiiw5s7bqnpq"; depends=[AER car ChainLadder ggplot2 ISLR lattice lmtest plm plyr reshape survey]; }; - apcf = derive2 { name="apcf"; version="0.1.7"; sha256="071gax2w9b0l74vls59y6syg2swiagz5xkab1x2wmmxk16y49l1s"; depends=[Rcpp]; }; + apcf = derive2 { name="apcf"; version="0.2.0"; sha256="0r107kl7s2zaa5mvm3926ww01k4brh4qn7y729f7l2lnmy3zidx5"; depends=[Rcpp wk]; }; apcluster = derive2 { name="apcluster"; version="1.4.9"; sha256="0wnbb3kj9m7rfq63xr43jjf6n8jxm1r2wvvx6g0qkss0wvipbb1s"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; ape = derive2 { name="ape"; version="5.6-2"; sha256="0mqjsh7maczd02iwa4fb896q3kgd9jnlilq7y1yz18ch0c54aqlv"; depends=[lattice nlme Rcpp]; }; @@ -6060,14 +6072,14 @@ in with self; { aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.1.2"; sha256="1w09flb6a4fxibfrm1z24pg672r80b7phgc0m7mv3vfw3l84v749"; depends=[ggfun ggplot2 ggplotify magrittr patchwork yulab_utils]; }; + aplot = derive2 { name="aplot"; version="0.1.3"; sha256="10cqa35bh4lhpnybaalp3d69k392b25ba16dgbngqz0vikzp4czk"; depends=[ggfun ggplot2 ggplotify magrittr patchwork yulab_utils]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.2.7"; sha256="05c3wkvpg3n44k9lbrsd0i4l1q554mqfcx7cqph60ngqfbrkvlcg"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; - appler = derive2 { name="appler"; version="0.1.2"; sha256="03sivpv12ssn7dzq780rb4fg4nc7da7nlk6cijzq9yadxgv53svm"; depends=[glue httr jsonlite rvest xml2]; }; + appler = derive2 { name="appler"; version="0.1.3"; sha256="1janvzi3kzxwx9hcmz2csj5f976022dci2rp51dcn88sjca5bjjf"; depends=[glue httr jsonlite rvest xml2]; }; applicable = derive2 { name="applicable"; version="0.0.1.2"; sha256="0yzfk4ajdx4l3xivf6v9vn7fqvzfma4842cvjixrng83p2v25sdq"; depends=[dplyr ggplot2 glue hardhat Matrix proxyC purrr rlang tibble tidyr tidyselect]; }; appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; }; - approxOT = derive2 { name="approxOT"; version="1.0.1"; sha256="0gp2p8biq2c7n3gasvwk72zqs5b623gphqh82n3j6sg9bm0i7r17"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; + approxOT = derive2 { name="approxOT"; version="1.0.2"; sha256="1j17dcs4nxss81q1d3mf6h7nkzrq202n7pqb7phza085xmjvpksx"; depends=[BH Rcpp RcppCGAL RcppEigen]; }; approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; }; approxmatch = derive2 { name="approxmatch"; version="2.0"; sha256="1n6v1h4zf1nf8j1a5d0h95v6q8dff39v9061i7zzi9ci3lw04748"; depends=[]; }; aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; @@ -6098,7 +6110,7 @@ in with self; { areaplot = derive2 { name="areaplot"; version="1.2.2"; sha256="0vyhf3662ppcahaw2zrxgpcxcn8fysd6lhl8vgr7cs8kl6fm4x47"; depends=[]; }; arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; }; arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; - arfima = derive2 { name="arfima"; version="1.7-0"; sha256="0kj8qv6m2fcdw8x735n8fk9cynm0jxi5v9hif0f879sxk6qkxb9y"; depends=[ltsa]; }; + arfima = derive2 { name="arfima"; version="1.8-0"; sha256="1japb8x9cl8dk66n47md7b8ivh34cx293n7gwbibnn3cfb387i7w"; depends=[ltsa]; }; argo = derive2 { name="argo"; version="3.0.1"; sha256="1q7gbyk2f8vimwzdmd1mfqyaql2gyawywilwzs6g1716gbk3gd80"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; argoFloats = derive2 { name="argoFloats"; version="1.0.4"; sha256="0n3c7gs5991fv6ypiagyxb0kzrbv80r7z0kspzbsp8ss04q2ymgc"; depends=[oce]; }; argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; }; @@ -6180,6 +6192,7 @@ in with self; { assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; + ast2ast = derive2 { name="ast2ast"; version="0.1"; sha256="146dlj5mdgjbmwkz8qy978350b3khhgdhilzlbwnkl9m0li299cd"; depends=[purrr R6 Rcpp RcppArmadillo RcppXPtrUtils]; }; asteRisk = derive2 { name="asteRisk"; version="1.4.0"; sha256="0sph8jjayrgq0gl6n8hlhxpi4xv5bk2h2g47xx1jajihgkh88wgm"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; aster = derive2 { name="aster"; version="1.1-2"; sha256="0vf1ffkn4a3bz2lgz1gn2hjgp8c2v9ch05d5r1gh2q77zijvry1m"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; @@ -6217,8 +6230,8 @@ in with self; { audiometry = derive2 { name="audiometry"; version="0.3.0"; sha256="0v6lhkm298xgdny0fhpldfwj8s4ljr21w6y6sv3vvyl87qjgwx8i"; depends=[ggplot2]; }; audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; auditor = derive2 { name="auditor"; version="1.3.3"; sha256="1y6qpbc78yv2w1y9p0mczv69s661i9n2y0x09c5p3hdka7km662w"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; - audrex = derive2 { name="audrex"; version="1.0.1"; sha256="06r9gn3rdqxln197iyajdsx8ikq0m2hik171403y3dxxr5bf8jsf"; depends=[abind fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; - audubon = derive2 { name="audubon"; version="0.1.1"; sha256="14p07cxswgsdsmblwid9m5nmr0qr00cficg50qlb53fal8n1fajq"; depends=[dplyr magrittr memoise purrr readr rlang stringi V8]; }; + audrex = derive2 { name="audrex"; version="2.0.1"; sha256="1ifijkbqvdjp1si14p80mbqhq7sby8qgzr181agm3da1nkmic3vp"; depends=[fANCOVA ggplot2 imputeTS lubridate Metrics modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; + audubon = derive2 { name="audubon"; version="0.1.2"; sha256="1hy9hc39sxma22y7zfcg6851qnmx3fr7pkbyhmiq52m1ksrnf395"; depends=[dplyr magrittr memoise purrr readr rlang stringi V8]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; @@ -6233,9 +6246,9 @@ in with self; { autoFC = derive2 { name="autoFC"; version="0.1.2"; sha256="1hxpmd753qpzlyjivn37m1kij3gpp9x6xyw1x6090h9n4girnya2"; depends=[irrCAC]; }; autoFRK = derive2 { name="autoFRK"; version="1.4.3"; sha256="1k3h2gsck06dnvrifg9rhxi6b3fwfjrkvg0q2wzb9kdnnzgiwcln"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS mgcv Rcpp RcppEigen RcppParallel RSpectra spam]; }; autoMFA = derive2 { name="autoMFA"; version="1.0.0"; sha256="1sbcl38cq7y7hln1qffk5s71xgg9hs7dlwyvynqf96z2z2421pw4"; depends=[abind expm MASS Matrix pracma Rdpack Rfast usethis]; }; - autoMrP = derive2 { name="autoMrP"; version="1.0.1"; sha256="1ipqzjd9knpyz2ajxw38z8sbg4w4cgyg6627xlyx8i14wbdgrxmy"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr R_rsp rlang tibble tidyr]; }; + autoMrP = derive2 { name="autoMrP"; version="1.0.2"; sha256="11r849hglwgbqiq34q7xd3cdli5qrbqh90faj7pdm09sjkk4mn37"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr R_rsp rlang tibble tidyr]; }; autoRasch = derive2 { name="autoRasch"; version="0.1.5"; sha256="16xwh8v6p3ympn0xljb7d77n04g31gcppv8v39p96yfc9vaxkhsw"; depends=[doParallel foreach lavaan Rcpp RcppArmadillo]; }; - autoReg = derive2 { name="autoReg"; version="0.1.0"; sha256="1c5b02jxfsjk9byyj5z5491lv7dbzx2hp3kwbjcy0wvpz7wg1gnc"; depends=[boot broom cmprsk dplyr flextable ggplot2 mice moonBook nortest officer patchwork purrr rlang stringr survival tidyr tidyselect]; }; + autoReg = derive2 { name="autoReg"; version="0.2.6"; sha256="1jgk6gkqz4fm2xznbvxj334b5bc7i2hkpz6jn8k31l3y8c5fzqcz"; depends=[boot broom crayon dplyr flextable ggplot2 maxstat mice moonBook nortest officer pammtools patchwork purrr rlang scales stringr survival tidycmprsk tidyr]; }; autoTS = derive2 { name="autoTS"; version="0.9.11"; sha256="1mwpazynp5hdc2ccnhvddkajfcd4qam23pvjl9accq1rnxzxkiyv"; depends=[dplyr forecast ggplot2 lubridate magrittr plotly prophet RcppRoll rlang shiny shinycssloaders tidyr]; }; autocart = derive2 { name="autocart"; version="1.4.5"; sha256="1zgcmrm4dkdnr130hwwka2nwdczgvc3jc9hxrb6nfs8ijb24gl36"; depends=[fields mgcv Rcpp RcppArmadillo RcppParallel]; }; autocogs = derive2 { name="autocogs"; version="0.1.4"; sha256="0v27l9a0ysj7x9wjka1jl1bq9rmxmzldclcp1w59a6807wjlszhx"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; }; @@ -6245,7 +6258,7 @@ in with self; { autoimage = derive2 { name="autoimage"; version="2.2.3"; sha256="1jhkd7mbig6wpyc69iynfrj5i62lrwcwqbgjkmq8b9p5raglm1g2"; depends=[colorspace fields ggplot2 mapproj maps MBA]; }; autokeras = derive2 { name="autokeras"; version="1.0.12"; sha256="0wyqz40fc277z1q1zxdmmjzksnmlh58r27a6hx08h6hmzvng5avy"; depends=[keras reticulate]; }; automagic = derive2 { name="automagic"; version="0.5.1"; sha256="1mmm6kj6mxrn3s4v8ryszkxr9z7bh9cvhin7xjq111fkwly7wjkq"; depends=[dplyr formatR knitr magrittr purrr remotes yaml]; }; - automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; + automap = derive2 { name="automap"; version="1.0-16"; sha256="0jz0p28gmx9cpzv4cz0xhbml3w1inf2nsd2ynbhmfxg5rm2f7dca"; depends=[ggplot2 gstat lattice maptools reshape sp]; }; automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; @@ -6281,41 +6294,42 @@ in with self; { bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; bWGR = derive2 { name="bWGR"; version="2.0"; sha256="16yhy6gnjkgrlj41mszfadzvb83c8l4wa5gvlvzlm7cdrdrp33p0"; depends=[Matrix Rcpp RcppEigen]; }; - baRcodeR = derive2 { name="baRcodeR"; version="0.1.5"; sha256="1fdywv7mvxx3q8pildsfllmw814f2p71xcwvfmplngv2vgrpzz9w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; + baRcodeR = derive2 { name="baRcodeR"; version="0.1.7"; sha256="199cdbwphpz6ds19841s32bm2rjd7b6v484bvaskw94z0d8bcn6w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; - babelgene = derive2 { name="babelgene"; version="21.4"; sha256="1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0"; depends=[dplyr rlang]; }; + babelgene = derive2 { name="babelgene"; version="22.3"; sha256="1735h4s2vahv55pmq65zkgxq8d5x71i1is03rf17dric8yynjjhg"; depends=[dplyr rlang]; }; babelwhale = derive2 { name="babelwhale"; version="1.0.3"; sha256="0ph825dwvr48fhamy1l5564linz7cj7b9sj511as77f1yqycv4a2"; depends=[crayon dplyr dynutils processx purrr]; }; babette = derive2 { name="babette"; version="2.3"; sha256="00l04pwv3sizi4daasai3pszp3spzsyj85g4dj9wqpiv51zcpj9a"; depends=[beastier beautier mauricer phangorn remotes stringr testit tracerer xml2]; }; babsim_hospital = derive2 { name="babsim.hospital"; version="11.8.4"; sha256="0c66w90ndzmnzahv0krzw8qlqdip3821v74v7h5264cg8fgiflc6"; depends=[checkmate curl data_table dplyr ggplot2 golem igraph lubridate markovchain padr plyr rvest scales simmer slider SPOT testthat xml2]; }; babynames = derive2 { name="babynames"; version="1.0.1"; sha256="1gcpd6lncqwjz05z98ra6hcc8q966l2594ylkg50avndild89n3h"; depends=[tibble]; }; bacistool = derive2 { name="bacistool"; version="1.0.0"; sha256="1hby2bmxbc8qgjzgkp2flv89lpzzvg3vr7s98989ayjmv4vgmqaf"; depends=[rjags]; }; backShift = derive2 { name="backShift"; version="0.1.4.3"; sha256="1dhmq51w07vcqlngsb04ip0wqbgqq2xdfdm1w82r082f07ywqb16"; depends=[clue ggplot2 igraph MASS matrixcalc reshape2]; }; - backbone = derive2 { name="backbone"; version="2.0.0"; sha256="1ypcy4l1iikz500sshf2ikgqlgw2ghya3bqqqashjblwpnby3rc4"; depends=[igraph Matrix network PoissonBinomial Rcpp]; }; + backbone = derive2 { name="backbone"; version="2.0.3"; sha256="0zri6v4ikfbh6l7lnk3lm5kiak4k01jd0xbpk57i4s2xgp9v1rrp"; depends=[igraph MASS Matrix network PoissonBinomial Rcpp]; }; backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; }; backports = derive2 { name="backports"; version="1.4.1"; sha256="0x144hij0rzhrxdq3k5ph8fk7pdgl1avjca25j4mlpmhzdckqp44"; depends=[]; }; backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; - badger = derive2 { name="badger"; version="0.1.0"; sha256="09g8183dz58546mcql7fs2px71ycpi2jfw69zca9d96c9py98ryn"; depends=[desc dlstats rvcheck usethis]; }; + badger = derive2 { name="badger"; version="0.2.0"; sha256="0a7a4i00swqnmc4v0sd8mjr59p8q8vkyy89ifdrygk7qdqykbjg2"; depends=[desc dlstats rvcheck usethis]; }; bagged_outliertrees = derive2 { name="bagged.outliertrees"; version="1.0.0"; sha256="0fcd54j6vci2yvlb609dck4pwbn54irkdk472cjc965rcw6dz9z7"; depends=[data_table doSNOW dplyr foreach outliertree rlist]; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; }; baggingbwsel = derive2 { name="baggingbwsel"; version="1.0"; sha256="0khvkxml4nwkahgl5ijdv0bjgwabmznzq99p71iw26ck808hafkl"; depends=[doParallel foreach kedd mclust misc3d nor1mix Rcpp rgl rpanel sm tkrplot]; }; - baggr = derive2 { name="baggr"; version="0.6.18"; sha256="0qmsg3w6blpj9nlk0blzlm7l04z4r33gw17r6n52l2wf8x0giirx"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; + baggr = derive2 { name="baggr"; version="0.6.21"; sha256="08f6wn1r3rxdlvchgxkrwpl08qlqqj6arvw4kkncvnb94g83cy4y"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; baguette = derive2 { name="baguette"; version="0.2.0"; sha256="0ik19w7cgbzp4n4f9v1s7sf668m45sqfw4m4ny7mbfjdq53iag28"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; bahc = derive2 { name="bahc"; version="0.3.0"; sha256="0yz0v33fhm38ivhr7bvajk9v7wdmhg9qg7ac8r2qr00rns82m6y3"; depends=[fastcluster matrixStats]; }; bain = derive2 { name="bain"; version="0.2.8"; sha256="101rlxf1m6nrmzwxxv2w0m2a9s26l39a5nfjnad8gza5rvj7q076"; depends=[lavaan]; }; baker = derive2 { name="baker"; version="1.0.0"; sha256="166j6b2j3r0apsnvcnfycxhf1kv4nblscmnjdl2xsw5wwrbx677f"; depends=[abind binom coda ggplot2 ggpubr gridExtra lubridate mgcv mvbutils R2jags reshape2 rjags robCompositions shinydashboard shinyFiles]; }; bama = derive2 { name="bama"; version="1.2"; sha256="1amxls4jl2ys5wkn600xmx0y3d9zhkz2s96vn7h8fnrrv35212yp"; depends=[BH Rcpp RcppArmadillo RcppDist]; }; bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; - bamdit = derive2 { name="bamdit"; version="3.3.2"; sha256="11v9hy8ijbcqhwim0s3y69dz11jvys4vjvfnshj4p5qdz38sji6l"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; + bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; + bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; bamlss = derive2 { name="bamlss"; version="1.1-6"; sha256="0p3hx01209yjgw8cd8s1ns1n502f5dyvi650d58195w88xycvr7c"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; bamp = derive2 { name="bamp"; version="2.1.0"; sha256="0d72s0vzy32zcd9sw1zlxc0whh5dpvlk7r9680b9smpzb58ijgfi"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; - banter = derive2 { name="banter"; version="0.9.4"; sha256="076jjgfw193bzmymqgsgg4fppd2zvwskjw9b3zxzybnydyz7shfi"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; + banter = derive2 { name="banter"; version="0.9.5"; sha256="07m2k5q2v4c7rdbdrahxab5f8597xk4iadf49asp3jjzdj9haj4x"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; bardr = derive2 { name="bardr"; version="0.0.9"; sha256="02499b3j10j7qq3whz9qijfp3amp0s1ji8qk76c53dsnkj8f9hvs"; depends=[]; }; @@ -6331,7 +6345,7 @@ in with self; { base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; basecamb = derive2 { name="basecamb"; version="1.1.0"; sha256="02svxz0mlk2r4s0g8lizcwmp9nhbwgp6q3c9p9pmsf1nry4j3lbf"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; }; - basedosdados = derive2 { name="basedosdados"; version="0.2.0"; sha256="0hv6gv49bcs6fyqvk4kzvh4q33lbbn1mahrqc4vg2da0jr431vmx"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue googleAuthR httr magrittr purrr Rcpp readr rlang scales stringr tibble typed writexl xml2]; }; + basedosdados = derive2 { name="basedosdados"; version="0.2.1"; sha256="0mbnpz0w7sx4awfkhf6jdnnp1a2zj6q0wamiwqqs86wbdp9mjam2"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue googleAuthR httr magrittr purrr Rcpp readr rlang scales stringr tibble typed writexl xml2]; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; }; basefun = derive2 { name="basefun"; version="1.1-2"; sha256="02jrjxkzg5pzw73kzypdazqjrg8azhbv09157j3px3d2331qiy9d"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.3-1"; sha256="1spmp8z0hrb6db0r52i16524cp9zy1d1hr4y3b3i9q38m1iskpms"; depends=[limSolve SparseM]; }; @@ -6339,7 +6353,6 @@ in with self; { basetheme = derive2 { name="basetheme"; version="0.1.2"; sha256="0yck4qc7qd406s7kw95xgnfc0pfvzk3ylhkv6mk6l2wbkfm8ldrb"; depends=[]; }; basf = derive2 { name="basf"; version="0.2.0"; sha256="0l3y5p51jic3b8h1jclhhma4myll1g3vsxr8rj0dx1bvjfimkryw"; depends=[raster sf tibble]; }; basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.2.7"; sha256="02lwkbpr9yj5q7l3ing1v47c4ifvwaxn8yyr3b34fral08cgpn9x"; depends=[]; }; - basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; }; basicspace = derive2 { name="basicspace"; version="0.24"; sha256="1cy226njbax7dcgql89fns4l4w9fq328x3h0vb93l5jk883jgi8h"; depends=[]; }; basictabler = derive2 { name="basictabler"; version="1.0.2"; sha256="0d5gpvf3la0fky786z74i8q7il1mmb2prg8y9wslg2gbngnkvkvm"; depends=[dplyr htmltools htmlwidgets R6]; }; basifoR = derive2 { name="basifoR"; version="0.4"; sha256="1clnmb57g7aclgw8ibj92pfixaism0af85w4kn0208nbm75c1kvf"; depends=[curl foreign Hmisc httr measurements RODBC]; }; @@ -6352,6 +6365,7 @@ in with self; { batchscr = derive2 { name="batchscr"; version="0.1.0"; sha256="094l2cq7lcdrlsdmsxmbal7srxdg20rxbms46h1sd414wq26d413"; depends=[]; }; batchtma = derive2 { name="batchtma"; version="0.1.6"; sha256="1ii7iiq6vhfqnhzp5xpl40g2gdmm9c7ib3kg8fbswg99f96hqhbp"; depends=[broom dplyr geepack ggplot2 limma magrittr nnet purrr quantreg rlang stringr tibble tidyr]; }; batchtools = derive2 { name="batchtools"; version="0.9.15"; sha256="0d2xy77hkzhcnyz8zxcv98i80fx6ripjw4rvyx4ww1d0vjjgqf52"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; }; + bate = derive2 { name="bate"; version="0.1.0"; sha256="1jrf614g5699ygw73pda7dk79ydx57sc8wpq4vg51yy98arhidc2"; depends=[concaveman dplyr ggplot2 latex2exp magrittr purrr tidyselect vtable]; }; batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; bayMDS = derive2 { name="bayMDS"; version="1.6"; sha256="1g4haskms28rn5wpkqn7rgaqpx5n4x3rz48n292l1vknb4mjwm8n"; depends=[ggplot2 ggpubr gridExtra progress Rcpp RcppArmadillo rgl shiny shinythemes]; }; @@ -6362,7 +6376,7 @@ in with self; { bayesCT = derive2 { name="bayesCT"; version="0.99.3"; sha256="0ragig1x34syhsnbnd58l2s7g23j7fb0cl9wkasvxq8cicw5hqgn"; depends=[bayesDP dplyr magrittr purrr survival]; }; bayesDP = derive2 { name="bayesDP"; version="1.3.6"; sha256="0li063187icw96shrbawfa00vkb42m5y38a4j2aahryajjlsva57"; depends=[ggplot2 MCMCpack Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="3.0.3"; sha256="0qgcy70sp3mlcpdkkg3nvxrvwgwy698r19yg31s3qjak17jnp8qn"; depends=[coda numDeriv]; }; - bayesGAM = derive2 { name="bayesGAM"; version="0.0.1"; sha256="072q3kybnxjwc4s6qlww492cg43cr4zk6midyp5av7y3hnxbmqm8"; depends=[bayesplot BH boot cluster corrplot geometry ggplot2 gridExtra loo MASS mlbench Rcpp RcppEigen RcppParallel rstan rstantools SemiPar StanHeaders]; }; + bayesGAM = derive2 { name="bayesGAM"; version="0.0.2"; sha256="13zs68d26c66hkm8mfhcygk8rw6sdg4rf4a4az254lf2xvypbh5d"; depends=[bayesplot BH boot cluster corrplot geometry ggplot2 gridExtra loo MASS mlbench Rcpp RcppEigen RcppParallel rstan rstantools SemiPar StanHeaders]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.10"; sha256="1jb7jfyxp210pc8myv9lnwb55hy19d39m10kkhs5lyjwc2lv0401"; depends=[coda mvtnorm]; }; bayesImageS = derive2 { name="bayesImageS"; version="0.6-1"; sha256="0hz6ynvrhsxp097zswdlascza5n27cq4hfaqdc3r8b7crmh7lrim"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="5.0-3"; sha256="1dlaqp6qd6qi8p8ni3z7adjrsn44njzvngyga4a97crp3jfqpx7k"; depends=[bayesTFR car coda data_table hett wpp2019]; }; @@ -6371,7 +6385,7 @@ in with self; { bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.1-1"; sha256="0grkrcgn1x1qaajyamzlp7csmsmmslbjbmajk42m5g7cxxljvylr"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; - bayesZIB = derive2 { name="bayesZIB"; version="0.0.2"; sha256="0lwrgzfbp3cjjc462va2vv5s43lp9j9hmydg3g2qs9w92mc7m77d"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; + bayesZIB = derive2 { name="bayesZIB"; version="0.0.3"; sha256="0787k6m66rvqj1y1plykqpphd3sd19jy30k5yd275cywnn04hgvj"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; @@ -6391,9 +6405,9 @@ in with self; { bayesmeta = derive2 { name="bayesmeta"; version="3.0"; sha256="035kjg86sfd3j8g9421id6z208rfmpk63qp0fpssv44zb96wy4wv"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; - bayesnec = derive2 { name="bayesnec"; version="2.0.2"; sha256="1ps00byg0s0wf86w9nq6yhn4ak1ca6gmkafz3bmycr4alxhgjdqr"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; + bayesnec = derive2 { name="bayesnec"; version="2.0.2.3"; sha256="0f3d045crlnnks7mi5fp7lyrpqgsjhyp4c7vf2ghz1346l6vdb2n"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; - bayesplot = derive2 { name="bayesplot"; version="1.8.1"; sha256="0aman4273i8hy3z0qay1nrsr7v27m4icm1j6f4w59ylix80l5myq"; depends=[dplyr ggplot2 ggridges glue reshape2 rlang tibble tidyselect]; }; + bayesplot = derive2 { name="bayesplot"; version="1.9.0"; sha256="0hqy597ang53phxnl084hak35ffqz9lw9hygax7370gpkjws908a"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayesreg = derive2 { name="bayesreg"; version="1.2"; sha256="0yrx7y39xxmm0z4myj6ma24dkkhgcily5baxr6yf9balgvhd5wf4"; depends=[pgdraw]; }; bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; @@ -6412,10 +6426,10 @@ in with self; { bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.24"; sha256="1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; - bbotk = derive2 { name="bbotk"; version="0.5.1"; sha256="1171vcs96j8f4n0rjsbbiscs4nxgd4209lr9biy99lvhjvjdsfsm"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbotk = derive2 { name="bbotk"; version="0.5.2"; sha256="0k1vlh14mfbcgdw2yfhab7shkrqm4d2h6af12mybr9gks26xmw82"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; - bbsBayes = derive2 { name="bbsBayes"; version="2.3.8.2020"; sha256="043wj15w7vb5xzwyrzfzf19n3iccly9mdw75lw176i3wfdnprhfv"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI latticeExtra progress rappdirs rgdal sbtools sf stringr]; }; + bbsBayes = derive2 { name="bbsBayes"; version="2.4.1"; sha256="1fy4jfx83fjhf350vwafpf0kf2wi482a78sy3dla4k1mkg1l9wwa"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI latticeExtra mgcv progress rappdirs rgdal sbtools sf stringr]; }; bbw = derive2 { name="bbw"; version="0.1.3"; sha256="1z3an561qh0rfi3jhh1ghsdbg8aimqmf4hpqri2jz39in3p0gwg4"; depends=[car]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-5"; sha256="1jj7iag9azmxccc8a45vaxi6lw4jbfzj68wm0zdsggplgvzljn1f"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; @@ -6471,7 +6485,7 @@ in with self; { beezdemand = derive2 { name="beezdemand"; version="0.1.0"; sha256="1i6p36cfvz87k6llpibklmdbjb7vp1v38ijxaqkmv1jzc28sj3cl"; depends=[ggplot2 nlmrt nls2 nlstools reshape2]; }; befproj = derive2 { name="befproj"; version="0.1.1"; sha256="194kicmfxamy061zx0ljmvrlh8gm56fcmhj1j2qfrihklpab4xhx"; depends=[dplyr]; }; beginr = derive2 { name="beginr"; version="0.1.7"; sha256="1a1lzjmq0qimm8yrb4n6knh23gyqxgax60n95rih95sg34904d0m"; depends=[cranlogs]; }; - behaviorchange = derive2 { name="behaviorchange"; version="0.4.3"; sha256="19kdwwzfd1cg9aycd2fnwc5dczrygclgpa6f7bri43lzcrsfbsgy"; depends=[BiasedUrn data_tree DiagrammeR DiagrammeRsvg ggplot2 googlesheets4 gridExtra gtable knitr rmdpartials ufs viridis yum]; }; + behaviorchange = derive2 { name="behaviorchange"; version="0.5.1"; sha256="09q60hvnsjaq76x2agqgbmmk0wwzmwnmhbr34bdxm90cymbxrw5v"; depends=[BiasedUrn data_tree DiagrammeR DiagrammeRsvg ggplot2 googlesheets4 gridExtra gtable knitr rmdpartials ufs viridis yum]; }; behavr = derive2 { name="behavr"; version="0.3.2"; sha256="01ny099m2zmvlalwiq3nqkgynnxn1mdspch15lkawwd40q8s9s4p"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; belg = derive2 { name="belg"; version="1.5.0"; sha256="0l2gh5nm37vrfjl1wwa8zhgz67fbral5g9w59npz6swc9xqmxlgp"; depends=[Rcpp RcppArmadillo]; }; @@ -6486,27 +6500,26 @@ in with self; { benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-6"; sha256="1vywnc6k37gpaq7g59v3qa6619svcmnd8ri5zm5l0ila2s3ccb2c"; depends=[dplyr lazyeval readr]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.21.0"; sha256="0pzb9lsbls7jcyaj1vg9cqgdqc8gbjab83xlsbdi8w40zgsv85vf"; depends=[abind]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.21.2"; sha256="0gspikfvl0cp6x0a15w3vbqfds2hmc1sb9bi4v3mniwhi2kh8izy"; depends=[abind]; }; bestNormalize = derive2 { name="bestNormalize"; version="1.8.2"; sha256="0pbyn0ay43jcxssxgvivvfakcwq0y23c2qq6a01656q9lqbv9f1r"; depends=[butcher doParallel doRNG dplyr foreach LambertW nortest purrr recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; bestridge = derive2 { name="bestridge"; version="1.0.7"; sha256="10nlk1vrzmgxfia9b3skmg5594ab5s3d64k2awyxybkz2pzz7gb1"; depends=[MASS Matrix pheatmap Rcpp RcppEigen survival]; }; betaBayes = derive2 { name="betaBayes"; version="1.0"; sha256="15dp5dd0sw613xjkdfqw4iizfdagflp0qwykmng8ml6agwd21s4p"; depends=[betareg coda Rcpp RcppArmadillo]; }; - betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafunctions = derive2 { name="betafunctions"; version="1.6.1"; sha256="051d4fryvcdfbsm087mxqlx247jz671wx5rffsffg828azj2mxh9"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; - betapart = derive2 { name="betapart"; version="1.5.4"; sha256="1m2rykch2vhh90s08s9s2kmmrxhp9ik32s5zkdw8991cbw2j7n68"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; + betapart = derive2 { name="betapart"; version="1.5.6"; sha256="08rphgdqxgkih70kqnn7x1hkahl309pa363zbqsdwk0lmfq2azkh"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; betaper = derive2 { name="betaper"; version="1.1-2"; sha256="0gh5xjimg0wgv626g3y34mvgrji2aylnm89iwadg7d6g4s457ynp"; depends=[vegan]; }; betareg = derive2 { name="betareg"; version="3.1-4"; sha256="00c1l5ah74vf7ljpja4iwyf9cwcvb1c835hmc98jp2x6jrh9h1ji"; depends=[flexmix Formula lmtest modeltools sandwich]; }; betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; bets_covid19 = derive2 { name="bets.covid19"; version="1.0.0"; sha256="1pqa6zpkkcmnm9a4m3676css0fi2lp4ik6mmhfhnsr4v4kv2pq2s"; depends=[rootSolve]; }; bettermc = derive2 { name="bettermc"; version="1.1.2"; sha256="1g264b21kh5kf0v5qk09gf3ya0amblwnqlpw93h6g0k0dd3vks0h"; depends=[checkmate]; }; - beyondWhittle = derive2 { name="beyondWhittle"; version="1.1.2"; sha256="0gi2pz591iqkjxg2jnn6igflyakdb4p40yafrw5gxcqa0kfj79h9"; depends=[BH forecast ltsa MASS MTS Rcpp RcppArmadillo]; }; + beyondWhittle = derive2 { name="beyondWhittle"; version="1.1.3"; sha256="0hx1j6vgq25qk966wkc8pq0y6whxqnp1nglm3d4majqp55iqi1lx"; depends=[BH forecast ltsa MASS Rcpp RcppArmadillo]; }; bezier = derive2 { name="bezier"; version="1.1.2"; sha256="1vw5128v8h973xwa1fdm9cw2jvrldj87nd55lddlp3qsz3ag4br6"; depends=[]; }; bfast = derive2 { name="bfast"; version="1.6.1"; sha256="1vjklk7d9b0q7j348aqvspm7rn80bh06hz66r2z1qs9436ppkx5a"; depends=[forecast Rcpp Rdpack strucchangeRcpp zoo]; }; - bfp = derive2 { name="bfp"; version="0.0-44"; sha256="1lh25g4ac1f1asz4i0mnizbxqzslz6kjlg1d7mcjnp6qn7pkmg20"; depends=[Rcpp]; }; + bfp = derive2 { name="bfp"; version="0.0-45"; sha256="1vgzf3nxavnydbfcg539xb0kr220yqd053697yhq84j0g2an10xg"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="0.9.6"; sha256="0k3bwda32j0rfdkzddqf81mpaa1z73cm05xh19psa51vgrbn9gg9"; depends=[DescTools maptools rgdal rgeos rlang sp spdep]; }; bfsl = derive2 { name="bfsl"; version="0.2.0"; sha256="10z3w1fk4va2ajvpnqp0llgw4a047iaya6xi57if1a7jd7r1jxfh"; depends=[generics]; }; bfw = derive2 { name="bfw"; version="0.4.2"; sha256="0qgq47axa0r9653d1sjm00fvfx49v28id5sngwyrgkppcngmbg9p"; depends=[circlize coda data_table dplyr ggplot2 magrittr MASS officer plyr png runjags rvg scales]; }; @@ -6525,7 +6538,7 @@ in with self; { bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; biblio = derive2 { name="biblio"; version="0.0.6"; sha256="079p0qzmi3sg2ff7ln9lg65lf7r402rldqfpxmfvckhm9s6b29b4"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="3.2.1"; sha256="1iar9v9isn8c445lj5g6wrznsy9xn7xmyik0km5c98hxjsibwfzx"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; - bibliometrixData = derive2 { name="bibliometrixData"; version="0.1.0"; sha256="0fdfgqsfiq3iacj4vb3bvx98waqzqxdsn2ds8wq86a30lm055d7n"; depends=[]; }; + bibliometrixData = derive2 { name="bibliometrixData"; version="0.2.0"; sha256="00x1kcdf60j2d6vyjaq6vvfi185j29r401gbl7mmpqa4qw4cf739"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; bibs = derive2 { name="bibs"; version="1.1.1"; sha256="0slxqhcm4fhdmr2dj1c31zs8sgl39267179nbc59jlpb0z77z2d6"; depends=[GIGrvg]; }; bibtex = derive2 { name="bibtex"; version="0.4.2.3"; sha256="0vdwx6808r73pk15263f33bkqbfmb08d8jkmr4d7h4ml414ikbbv"; depends=[stringr]; }; @@ -6575,7 +6588,7 @@ in with self; { billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.3.1"; sha256="189ngvg84rcwhrivxskmjv3srhadvzr4p1v8pf11axyv2qn01b0x"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang scales shiny]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; - bimets = derive2 { name="bimets"; version="2.0.2"; sha256="0ch83l0g5zalbwxj0682yak99mlfba2i0lnmb44g74dcsism6psg"; depends=[xts zoo]; }; + bimets = derive2 { name="bimets"; version="2.1.0"; sha256="0lwx2ww0qr8hfwgw1ycazd3scypk0jyv3nqvcfd652992f1n24mq"; depends=[xts zoo]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.1.0"; sha256="1hgz1w0bxbd82rx96s6b63wjczsb1x2l6j526wcnwix36kibv3p3"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; @@ -6606,7 +6619,7 @@ in with self; { binsreg = derive2 { name="binsreg"; version="0.7"; sha256="1qxf5096vzf2j9d7yya0pr1hgxgkxm5llvz5ddyf0hqp22cjcsf7"; depends=[ggplot2 matrixStats quantreg sandwich]; }; binst = derive2 { name="binst"; version="0.2.1"; sha256="09kzk7n1j9nzgyijwirzk33z6p6hc67zkd05hv1i9qfijy31gci4"; depends=[rpart]; }; bio_infer = derive2 { name="bio.infer"; version="1.3-6"; sha256="1hs11c9qpdsl1awgk3b34mcsnr8g1xpg3zd9dlrqrz6ppdqkgxmn"; depends=[]; }; - bio3d = derive2 { name="bio3d"; version="2.4-2"; sha256="1jvcmpzi9knhxq5jsbhg8slm8hnlx2y8smmwwrbnbyd0rmk5fhci"; depends=[Rcpp]; }; + bio3d = derive2 { name="bio3d"; version="2.4-3"; sha256="0x3apqxbk4lvvcnvvdsyjd9f6qh9f9qgml3ih69hl9ikj06iy0y6"; depends=[Rcpp]; }; bioC_logs = derive2 { name="bioC.logs"; version="1.2"; sha256="16hbw8mbr3nn1k7hr8ihp4lcvd22jk396kbaw2jjd1gw9lvbhicd"; depends=[]; }; bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; @@ -6649,7 +6662,7 @@ in with self; { bisect = derive2 { name="bisect"; version="0.9.0"; sha256="1dr95gnc9rb3i8603wspf0hznmvk5akk46nyf1bhv88mjz2i5q77"; depends=[]; }; bisectr = derive2 { name="bisectr"; version="0.1.0"; sha256="1vjsjshvzj66qqzg32rviklqswrb00jyq6vwrywg1hpqhf4kisv7"; depends=[devtools]; }; bisque = derive2 { name="bisque"; version="1.0.2"; sha256="0zp2r1vg29q2ds34hhyjv9pz761mi0qncx9p4ilwnfd5yj9pmzwq"; depends=[foreach itertools mvQuad Rcpp RcppArmadillo RcppEigen]; }; - bistablehistory = derive2 { name="bistablehistory"; version="1.1.0"; sha256="1bxhv772vsnpmjsj82k351mm54w9vb29d1nd3daz9pk5j52ilih4"; depends=[BH boot dplyr future glue loo magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; + bistablehistory = derive2 { name="bistablehistory"; version="1.1.1"; sha256="0lk4kbxrnkr66cnyalzl2m18wwzf4y23r016nl1n52209vviql95"; depends=[BH boot dplyr future glue loo magrittr purrr Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; bit = derive2 { name="bit"; version="4.0.4"; sha256="0s7isadibxp2wr62r5cpbyh9z31sczzfz4j3rm7gxgjfpqgq8174"; depends=[]; }; bit64 = derive2 { name="bit64"; version="4.0.5"; sha256="0y0m7q1rwam1g88cjx7zyi07mj5dipxd9jkl90f294syx8k6ipr5"; depends=[bit]; }; bite = derive2 { name="bite"; version="0.3"; sha256="00sph3pdbb9p21s3263ni4by2ivvya1sbjm9wvwx1rwjr4f31jps"; depends=[ape coda MASS phytools sm vioplot xml2]; }; @@ -6658,15 +6671,14 @@ in with self; { bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; }; bittermelon = derive2 { name="bittermelon"; version="0.2.1"; sha256="0acgi9x3v508igr5nr86nhxzjpl9m8nmqzg7iq65j6pvlr68n7zx"; depends=[findpython png rappdirs Unicode]; }; bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; }; - bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; }; bivrp = derive2 { name="bivrp"; version="1.2-2"; sha256="0b38nh38vgqjllb1z9627dm86yp0s06ky1g829g8kkz7rffdp2za"; depends=[MASS]; }; biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; bizdays = derive2 { name="bizdays"; version="1.0.9"; sha256="1ddl7mnxf5prvcmkdfmfhvxrcv8c7clm21qvmr54gwqf759afh07"; depends=[jsonlite]; }; bizicount = derive2 { name="bizicount"; version="1.0.0"; sha256="1h11cxl56j5mzdjrsb9x7csxad33xx4rd0sgvz3dbd759nbmi9am"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; - bkmr = derive2 { name="bkmr"; version="0.2.1"; sha256="0606i94lkici73g86xap142xkgrxk5pjid8c6rybjqqz9vqz48cv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; - bkmrhat = derive2 { name="bkmrhat"; version="1.1.2"; sha256="0wd8n9lwrrgs2mdxbhyx3sq5xkc7ifvbcwf260m8jgpblp9nn2yz"; depends=[bkmr coda data_table future rstan]; }; + bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; + bkmrhat = derive2 { name="bkmrhat"; version="1.1.3"; sha256="0l575dav5wyia37vm5j1dyljgk0k6l1hwfwsqr2gq3sb0iim4my4"; depends=[bkmr coda data_table future rstan]; }; blackbox = derive2 { name="blackbox"; version="1.1.32"; sha256="180y19ls0vdk98smhs9hxpcwg3hwpl62d19zdiml38bjlxmr0kav"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blaise = derive2 { name="blaise"; version="1.3.8"; sha256="1jvjli349rzyiij80ggb27fsqp0hd1fz2pw93rj6cssgipl911xl"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; @@ -6687,7 +6699,6 @@ in with self; { blob = derive2 { name="blob"; version="1.2.2"; sha256="1yn7f13icaix0apxp4drnciwdn8bx8xmbd129jd7ck4rcly0axj9"; depends=[rlang vctrs]; }; blockCV = derive2 { name="blockCV"; version="2.1.4"; sha256="1fikskjjq571rzmzmqf72z92qkvjb9wdx598kvd28y1ic0xzrgm6"; depends=[progress raster sf]; }; blockForest = derive2 { name="blockForest"; version="0.2.4"; sha256="14xggdm34hmdlz3hvvp5layk6mb016yppqf9x9rbia9lmmjbhgfh"; depends=[Matrix Rcpp RcppEigen survival]; }; - blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.5.1"; sha256="1f152m3fv0aaw2csgqvf1y231f5rjhwrkn69yyx9yb3ff65z49d8"; depends=[Rcpp rtkore]; }; blocklength = derive2 { name="blocklength"; version="0.1.5"; sha256="06d62hgkf2pphr6h3nba1b5r0izr45bvmrymrzq0lyc7xiwrh6na"; depends=[tseries]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; @@ -6695,7 +6706,7 @@ in with self; { blockmodels = derive2 { name="blockmodels"; version="1.1.5"; sha256="1h2g13yp8xhkw9icl5bi1nkc0qfqkqhlhdqbcsp0246g9amssci9"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.8"; sha256="05rzxwap8i7h5ijy04322cyim6kxhdhgq8y8nvp9q9gq3183bmrs"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="1.9"; sha256="0p6fp56b6kzxmff9grassq7f0pyblrk63gjkwzl482217pb2php9"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; @@ -6715,9 +6726,9 @@ in with self; { bmscstan = derive2 { name="bmscstan"; version="1.1.0"; sha256="1mr56ry9jzsd2z0zffcysy01bh62cg13hi4swdhdvwmjcsb5gq97"; depends=[bayesplot coda ggplot2 LaplacesDemon logspline rstan]; }; bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; - bnlearn = derive2 { name="bnlearn"; version="4.7"; sha256="05r80arqvcmnkw20gffrfc2ypnqf6628c8y3xr8pxw3wkfxdf79f"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.7.1"; sha256="028mgj6l36mypif7821yp2bsa5m1amfpwwd63bz6677plzd30f94"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.0"; sha256="0h7nk28ny4capnji1j5m2kzsc7l8a1z7icx0iak87pk4abzqlzmm"; depends=[coda ggplot2 igraph rjags]; }; - bnmonitor = derive2 { name="bnmonitor"; version="0.1.1"; sha256="1728i8rsa8dg2svcmy7bs4qwja8p0h7c6hwysjp61g4vm87shzp8"; depends=[bnlearn dplyr ggplot2 gRain gRbase matrixcalc purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; + bnmonitor = derive2 { name="bnmonitor"; version="0.1.2"; sha256="0lnwwd9bxyflk2sz7gs79ki4ypsmd7pzhysplvj9rjszwk1vlz9p"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; @@ -6727,16 +6738,18 @@ in with self; { bnviewer = derive2 { name="bnviewer"; version="0.1.6"; sha256="036jmypxg2ciiz388f90vm73l9djhpi6gzp1ibn9l0x3d072r7zz"; depends=[assertthat bnlearn caret e1071 igraph shiny visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; - bodycomp = derive2 { name="bodycomp"; version="0.1.0"; sha256="1fzw8g1dxvigknx8s6kd05z13p7ak0941y9bqzklgsfm9afiaj4d"; depends=[]; }; + bodycomp = derive2 { name="bodycomp"; version="1.0.0"; sha256="1hi3x2chs87ba5nh7ka6xjrl5yvwqqcdyj1dg87rpaiipyl8396n"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3.2"; sha256="1dws84ghc5r6zpnr23qd4l9bkazds8ar723wkrkikjni58vshjf1"; depends=[rJava]; }; bolasso = derive2 { name="bolasso"; version="0.1.0"; sha256="1radw0h1y1gq0lzfrdh2phnvbrxzlklm7hhbz6x4xpw6vybwbp1j"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; - bookdown = derive2 { name="bookdown"; version="0.24"; sha256="1qqvvfbpbd6sin8vpvr3zzlhlyx1i6b98yp77xj5zl220nid5slb"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bookdown = derive2 { name="bookdown"; version="0.25"; sha256="0v5nlm3lbm0h5cvd9j2211yqk68rkm416aq8qp6r8klj69xm1bri"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boomer = derive2 { name="boomer"; version="0.1.0"; sha256="0nb58msk7ycim15ssjwig9i62x51ydnakq83jg6vcbqjg1a9anry"; depends=[crayon pryr rlang rstudioapi styler withr]; }; + boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; boot_pval = derive2 { name="boot.pval"; version="0.4"; sha256="05gxpky92f9jhvhv4faj49ql8a9mrfqdgk802i0hdw4lmnn90k7j"; depends=[boot car lme4 Rdpack survival]; }; + bootCT = derive2 { name="bootCT"; version="1.0"; sha256="0971y4qhzq5vm614yzp20d3570l3kq7q4ryfii650w4gfz1535mg"; depends=[aod ARDL dplyr dynamac fBasics ggfortify gtools matrixcalc pracma Rcpp RcppArmadillo stringr usethis vars]; }; bootComb = derive2 { name="bootComb"; version="1.1.2"; sha256="0gg07ck2nf0ddqc5nflk5ms16m3c6dlf1a77m58q581mkavj6gyb"; depends=[MASS]; }; bootES = derive2 { name="bootES"; version="1.2.1"; sha256="16b14bycy3ds09hsxnk738k2xq9qmwcy3kzdqd6rw9w4j7167kf0"; depends=[boot]; }; bootGOF = derive2 { name="bootGOF"; version="0.1.0"; sha256="11nn4lc9wdx1z35mfpc3zkk1xr0pvvjyvjzpjlq3z4gm0hmniifz"; depends=[checkmate R6]; }; @@ -6762,7 +6775,6 @@ in with self; { boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-1"; sha256="01dp1w5lxmn6nixajg6dz0qincm0i1in03q7g284v37qnszyimqs"; depends=[metafor]; }; box = derive2 { name="box"; version="1.1.0"; sha256="13jdghfagpwr0x0yc7zg9hdysb2bzlcpc3fws4inj76v9285hdz5"; depends=[]; }; - boxcoxmix = derive2 { name="boxcoxmix"; version="0.28"; sha256="12f1lakfy9i1rq70cq0bffpdachsm58rcmbbhgnq1r31g028zrcc"; depends=[npmlreg qicharts statmod]; }; boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; bp = derive2 { name="bp"; version="2.0.1"; sha256="0r41ardnxgkwd1ib8krasrhzw5q840xs1qrahh6nq38c4yw2b9yi"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; @@ -6771,7 +6783,7 @@ in with self; { bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; bpbounds = derive2 { name="bpbounds"; version="0.1.4"; sha256="05knl0lmhbc399zwb35r8m1w5jvmwad8rg5m7m633pg7cfijayb9"; depends=[]; }; bpca = derive2 { name="bpca"; version="1.3-4"; sha256="1b0qigynj35sr5nf9y6hvcr52ydskqwx5wxwb27zawps3iykyjwf"; depends=[rgl scatterplot3d xtable]; }; - bpcp = derive2 { name="bpcp"; version="1.4"; sha256="0jwz9vrz6ivz70qzgvpvksk94rw5m7vi6yijbg8dj6biq5rq01lv"; depends=[ggplot2 survival]; }; + bpcp = derive2 { name="bpcp"; version="1.4.2"; sha256="1xgspmknjs7cqh0iw3qgikbxpbl2qscjx9n07ib5s3z8hi282wrn"; depends=[ggplot2 survival]; }; bpcs = derive2 { name="bpcs"; version="1.0.0"; sha256="0jsy2l1qnzr8098614d6pj7rydf6b9s7kxrkahyzq82ivby9hj5m"; depends=[badger BH coda dplyr ggplot2 gtools HDInterval knitr loo magrittr Rcpp RcppEigen RcppParallel rlang rstan rstantools shinystan StanHeaders stringr tibble tidyr tidyselect]; }; bpgmm = derive2 { name="bpgmm"; version="1.0.7"; sha256="0abh6jjglims8hjm2fwh0dz2qsgxy0fglxl5fnfgkwc139rsrhgy"; depends=[fabMix gtools label_switching MASS mclust mcmcse mvtnorm pgmm Rcpp RcppArmadillo]; }; bpnreg = derive2 { name="bpnreg"; version="2.0.2"; sha256="1acf7smlcg8b29ga47wpb23zpfb90iz19fjc5v0zppc8q20lgggl"; depends=[BH haven Rcpp RcppArmadillo]; }; @@ -6797,8 +6809,8 @@ in with self; { breakaway = derive2 { name="breakaway"; version="4.7.9"; sha256="149n30lxkyh9qapm9xfarxbrxlp2fkar437ndajryq8m4i39w08i"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; breakfast = derive2 { name="breakfast"; version="2.2"; sha256="1bdzi0czhjwiqid6xz1b10p9wqy051sy5jhxnwzh9bxzh94a79lk"; depends=[ggplot2 plyr Rcpp]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; - breathtestcore = derive2 { name="breathtestcore"; version="0.8.1"; sha256="1cdv3qc5bydpchw2qz8wgqsc1hjn0q97bsk05gm8s0xfxmkfn3jb"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; - breathteststan = derive2 { name="breathteststan"; version="0.8.0"; sha256="1h05yqpsa1r6p0iybwh7rap0n10vr2wj2driq7qyq6wk6y14m8hc"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; }; + breathtestcore = derive2 { name="breathtestcore"; version="0.8.4"; sha256="01hqcbqifvq38a1ab0q2c02zavnlajaa41ia0r63d2m6plmdpbsf"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; + breathteststan = derive2 { name="breathteststan"; version="0.8.4"; sha256="1j6dqjdd1079pyvgclayl1la0qa88irr9wx31viisjjri93n7wm9"; depends=[BH dplyr purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; brew = derive2 { name="brew"; version="1.0-7"; sha256="0vp7d628j6zzxhh6xfw5jlkv7wh6z2l3snbwjgv7jd56vk0mkf1q"; depends=[]; }; brglm = derive2 { name="brglm"; version="0.7.2"; sha256="08shcz0j1npdn7xkhsvlzs3z4rdwq3g4rk6a4xx8wirqw8n8s2an"; depends=[profileModel]; }; brglm2 = derive2 { name="brglm2"; version="0.8.2"; sha256="065ldmbagarhipl6hl25rlpcnp7c3h1adadyq2wgx0g09hq5ibjf"; depends=[enrichwith MASS Matrix nnet numDeriv]; }; @@ -6817,13 +6829,13 @@ in with self; { brms = derive2 { name="brms"; version="2.16.3"; sha256="1q93z4cf3iy4rs6pgvph6z7hc8q05iwif76hcg8p4kr6nl82nc38"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.1.1"; sha256="17mh539d11920mv5jn20l62md2cpkizlynw01j87pij8hj63ajn3"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; brnn = derive2 { name="brnn"; version="0.9"; sha256="0gyjvrakwd6nbgv94hbxvynsl52w0zswzp8fxl88rppycpgn81j6"; depends=[Formula truncnorm]; }; - brokenstick = derive2 { name="brokenstick"; version="2.0.0"; sha256="0si4chi6fcp6n8wwvx6mrj9xlrldwhvcrx1kv7xbfd0p7kaz89qh"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; + brokenstick = derive2 { name="brokenstick"; version="2.1.0"; sha256="0diz6p4y6yima4ykfg7m0rdkbn5j63xy8w65y1cc40pspwbsvd6d"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.76"; sha256="1yjalfrfy1hvrcs3ky452mdg2ss8ikascj9yngp5fnfrrljcg9wg"; depends=[ggplot2]; }; broom = derive2 { name="broom"; version="0.7.12"; sha256="1nbv4a4s8548h2q226xmhyp42higayh95yvllh1rcs264lmw3yh4"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; broom_helpers = derive2 { name="broom.helpers"; version="1.6.0"; sha256="11svlfn80xl8vyrq8vqxrqii5c77kp67drnal9v9l7q1frlnq509"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; - broom_mixed = derive2 { name="broom.mixed"; version="0.2.7"; sha256="1fh1vxi8n5y30mayk4aa1yis4c064fz5xyrg8m0rl8xgaxakhagz"; depends=[broom coda dplyr nlme purrr stringr tibble tidyr]; }; - broomExtra = derive2 { name="broomExtra"; version="4.3.0"; sha256="1f2xsq0r0m991y3p6639v16kjwm3im8yys7brzvgmsv04rg29rhq"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; }; + broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.3"; sha256="01l7c1p1gs70jd5875jxvcziagvldvwnhk25hak5ranmxkwi7qqn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; + broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; }; brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; @@ -6834,12 +6846,13 @@ in with self; { bs4cards = derive2 { name="bs4cards"; version="0.1.1"; sha256="0fhjj3wjhxl263lhlbm5jw9l227a5k9cpannpankr5h8bkn1408h"; depends=[htmltools magrittr rlang]; }; bsTools = derive2 { name="bsTools"; version="0.1.0"; sha256="08h029gznsw93xirsxc1ib61qpqw1k8qzc0cjha56yr4j8b8qagy"; depends=[html5]; }; bsam = derive2 { name="bsam"; version="1.1.3"; sha256="1yiplh4wcc711w59ir5hxlp3mmgsnfz01d6203vfgclzsi7ix5m9"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; - bsamGP = derive2 { name="bsamGP"; version="1.2.3"; sha256="1wqs2y9f7fgdvshhzwpjp811h4xhdd1lplpadnpffa2lmyv7vh5s"; depends=[ggplot2 gridExtra MASS]; }; + bsamGP = derive2 { name="bsamGP"; version="1.2.4"; sha256="1zga3h747fh61n9m88gazc2p2i905cwvwdkql3rh65h26cphvvs6"; depends=[ggplot2 gridExtra MASS]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; bslib = derive2 { name="bslib"; version="0.3.1"; sha256="0jcqklry1nkibz0sydsz5xdsnb4wnrrhvmyr9ji3k45bbipbap2z"; depends=[htmltools jquerylib jsonlite rlang sass]; }; bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; + bspline = derive2 { name="bspline"; version="1.0.2"; sha256="1xrf2gph4pqvsnjd4wcxcr1cmdqwhzadrm12a4ayrk0mgqnxf4ga"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; bspm = derive2 { name="bspm"; version="0.3.9"; sha256="1r0c0gnj0ps5cs9grwss7jxx5znywi80kng0rsb3dsmacwsfpkk1"; depends=[]; }; @@ -6851,14 +6864,14 @@ in with self; { bsts = derive2 { name="bsts"; version="0.9.7"; sha256="00iz1rwi7z02hipmmifzzgflf16b1va3pybxgi8xk3rdwxxvjpal"; depends=[Boom BoomSpikeSlab xts zoo]; }; bsub = derive2 { name="bsub"; version="1.1.0"; sha256="112hlvg15jlzg3drfzkslaly42vnvsycn9vif0w3iaw5fzsaa954"; depends=[clisymbols crayon digest GetoptLong GlobalOptions]; }; btb = derive2 { name="btb"; version="0.1.30.3"; sha256="00asbzjgcjd1cm5m1yndbgr60zpvnhbk5b7rhkhc2z1w513bwi8w"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; }; - btergm = derive2 { name="btergm"; version="1.10.3"; sha256="0y92zgcqzvq8vvv6rwmqja83jjm3q4ilg6ivyzaqsz1wgcvnbwmv"; depends=[boot coda ergm igraph Matrix network ROCR sna speedglm statnet_common]; }; + btergm = derive2 { name="btergm"; version="1.10.6"; sha256="19iil8dfrxjwm3gmrhlbiacv9fhicng9x37bxf04i53lx6fw7yar"; depends=[boot coda ergm igraph Matrix network ROCR sna speedglm statnet_common]; }; bubblyr = derive2 { name="bubblyr"; version="0.1.2"; sha256="04agfwk6rmbhlfblfw1irqnv3yrp00zfn4qwy2169b7ypg8r55v2"; depends=[glue htmltools]; }; - bucky = derive2 { name="bucky"; version="1.0.6"; sha256="01rlx0m6h66y1p9k5llg17qpajjhk2vmhbpwc4i5igf5x5g4clgc"; depends=[lmtest sandwich]; }; + bucky = derive2 { name="bucky"; version="1.0.7"; sha256="1ymlpmhgvhp7n7y9dbvi6zh73y8jvr09axq4skcliam8ks2xx1pm"; depends=[lmtest sandwich]; }; buffeRs = derive2 { name="buffeRs"; version="0.31"; sha256="1yr2bg2cyl8sm4g7jrjw9apj5lqhbqscw5mshs8r8niz0fkyq6lg"; depends=[sf]; }; - buildmer = derive2 { name="buildmer"; version="2.3"; sha256="1marbhayiv00wrhjp2cnsg3p7zkzd6f82x13m7xdlx71zbvc4rfh"; depends=[lme4 mgcv nlme plyr]; }; + buildmer = derive2 { name="buildmer"; version="2.4"; sha256="0xmdgmbzpvwl1f8yjw1bz9ydmmgn62md50yrhbgmm31j9q92lhm7"; depends=[lme4 mgcv nlme plyr]; }; buildr = derive2 { name="buildr"; version="0.1.0"; sha256="125s41d2ahww7ngli2mgl5999syjm5q5mxskv6jjrnfv7l6vhm3k"; depends=[glue magrittr readr rstudioapi stringr tibble usethis]; }; bujar = derive2 { name="bujar"; version="0.2-9"; sha256="1hx9yrry1v3vl14y1wpfp1l3cymyqhnff86sv6b112b9cfjpwmvq"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms survival]; }; - bulkAnalyseR = derive2 { name="bulkAnalyseR"; version="0.1.1"; sha256="18jzx4kv7sbyg834qqsm25k9s5kccljrnp4z9iy43f9kv0afan4i"; depends=[circlize ComplexHeatmap DESeq2 dplyr DT edgeR GENIE3 ggforce ggnewscale ggplot2 ggrastr ggrepel glue gprofiler2 magrittr matrixStats noisyr preprocessCore RColorBrewer rlang scales shiny shinyjqui shinyjs shinythemes shinyWidgets tibble tidyr visNetwork]; }; + bulkAnalyseR = derive2 { name="bulkAnalyseR"; version="1.0.0"; sha256="1j86qx90rjj1bm6jm107rqs8s1g7cz69302gjip0h6iwd77kmim1"; depends=[circlize ComplexHeatmap DESeq2 dplyr DT edgeR GENIE3 ggforce ggnewscale ggplot2 ggrastr ggrepel glue gprofiler2 magrittr matrixStats noisyr preprocessCore RColorBrewer rlang scales shiny shinyjqui shinyjs shinyLP shinyWidgets stringr tibble tidyr UpSetR visNetwork]; }; bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullwhipgame = derive2 { name="bullwhipgame"; version="0.1.0"; sha256="03nwf2v4zhgkxvkghpkbkxz0cnkqcwwl51ykrk25qciakfqkgfws"; depends=[shiny]; }; @@ -6892,7 +6905,7 @@ in with self; { c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="1.0"; sha256="1qg73g0g029wkzpmp0fgvyfz8p1k3x38yqx0404cpb3dxj4n4hcg"; depends=[lme4 Matrix mgcv mvtnorm nlme RLRsim]; }; cIRT = derive2 { name="cIRT"; version="1.3.2"; sha256="1iwgxc1jl118j9yjhjix9f7dm75sj82iz7ic58g5625fxzdgnw25"; depends=[Rcpp RcppArmadillo]; }; - cNORM = derive2 { name="cNORM"; version="2.1.0"; sha256="01iigvxl01h320yppnjlr46j7s2gz2g6yk00kfcr7b5zq8qzil2j"; depends=[lattice latticeExtra leaps]; }; + cNORM = derive2 { name="cNORM"; version="3.0.0"; sha256="0270lzyhk772k77a6b8hddfc23l3whyl33iypgc7lvgp7c1kxp2g"; depends=[lattice latticeExtra leaps]; }; cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; @@ -6908,7 +6921,7 @@ in with self; { cabinets = derive2 { name="cabinets"; version="0.6.0"; sha256="1pypn29v91zqncv5kxinfz0f633qmic7n87rf4amjrq83iiid6md"; depends=[cli crayon fs git2r glue R6 renv rstudioapi stringr]; }; cabootcrs = derive2 { name="cabootcrs"; version="2.1.0"; sha256="0aqp8ip0s9raz4minhaw7vcn253xld4dgr957wsl2sp2nd8z66rq"; depends=[colorspace lpSolve]; }; cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; - cache = derive2 { name="cache"; version="0.0.2"; sha256="0ffny3wbba755h6rs842z0hj5wyjhjin3b5lrxg09yqcjz03pll1"; depends=[cli digest here r_assert]; }; + cache = derive2 { name="cache"; version="0.0.3"; sha256="0ix8z9zxslnycqn75rlz7f059jwfcclpxbas5sihcdmrdavz5ggj"; depends=[cli digest here r_assert]; }; cachem = derive2 { name="cachem"; version="1.0.6"; sha256="0r0q5w8lsxak46crnkbi739qzys90hlw7cqqqhv99xzkpkvm554s"; depends=[fastmap rlang]; }; caesar = derive2 { name="caesar"; version="1.1.0"; sha256="17w19m1c4a8x68bfbll71r9d3d34xnqw7lkhvqbnajd0cdm9xpa2"; depends=[binhf]; }; caffsim = derive2 { name="caffsim"; version="0.2.2"; sha256="00bkgmmqrydpji2pvhcchgl2p8w5ksby4g80i3h76q0bm2325w9h"; depends=[dplyr ggplot2 markdown mgcv shiny tibble tidyr]; }; @@ -6917,6 +6930,7 @@ in with self; { calcWOI = derive2 { name="calcWOI"; version="1.0.3"; sha256="1bxsn9b99hnb365qvlzr0ymwavamlyhs5sm9s2fdjh4zv3f32n3l"; depends=[dualtrees LS2W wavethresh]; }; calculus = derive2 { name="calculus"; version="0.3.3"; sha256="1fhvr0l2mqik3d95v0vanafxmiab147g5a87q956g2i945wc5f22"; depends=[Rcpp]; }; calendR = derive2 { name="calendR"; version="1.1"; sha256="1gji7ns35swdgg7bzq3vrzi4hnb98c5iw6r1j0k7nn2fdx7kbffp"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; + calendRio = derive2 { name="calendRio"; version="0.2.0"; sha256="152fb5yaazb2hh99ag1aq675gc5f8xw990w55nkhxqhg6w5p0ln9"; depends=[dplyr forcats gggibbous ggimage ggplot2 suncalc]; }; calendar = derive2 { name="calendar"; version="0.0.1"; sha256="18ha6vpx2bpk8p08hajiq2d201fbqhzcycp8ks6wrr06fy04z689"; depends=[lubridate tibble]; }; calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; }; calibrate = derive2 { name="calibrate"; version="1.7.7"; sha256="19kgrnsyq67iqv1biyssqi30a6v2836ql20nabpy2m692ns0jfvi"; depends=[MASS]; }; @@ -6925,6 +6939,7 @@ in with self; { callr = derive2 { name="callr"; version="3.7.0"; sha256="02inaf3c7b0hikii7p2zwaphrq5myv4in92d9jxd1ilmhla5awnn"; depends=[processx R6]; }; calmate = derive2 { name="calmate"; version="0.13.0"; sha256="17gfk3am8frj9pqx31pmjswm5nvca9nqbanl0qj4ypsr8wymix7w"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; + camerondata = derive2 { name="camerondata"; version="1.0.0"; sha256="0nj9dxwklhqyqrqfq88vpi4mdd6gvd3mzi80h8fi7hjzv5pmgqad"; depends=[]; }; campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; campsis = derive2 { name="campsis"; version="1.2.0"; sha256="1nngm2g2j8q7kfa7pl11zg28mb8m9kyyc3lfxsldydm6vijlckv7"; depends=[assertthat campsismod dplyr ggplot2 MASS plyr purrr rlang tibble tidyr]; }; campsismod = derive2 { name="campsismod"; version="0.8.0"; sha256="1h919ci4jnwi812grbi4wjl7r86142xvb83hbhjni3yl93k0627s"; depends=[assertthat dplyr magrittr plyr purrr readr]; }; @@ -6963,7 +6978,7 @@ in with self; { cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; care = derive2 { name="care"; version="1.1.11"; sha256="0897v6acxf1myncd507by8zp7aga77pschyix1m4fzgpc6z35vlm"; depends=[corpcor]; }; careless = derive2 { name="careless"; version="1.2.1"; sha256="1zlkzrc9fw926knj6w7flv4q0w29k4aichawvprk94rk1bnrvdz5"; depends=[psych]; }; - caret = derive2 { name="caret"; version="6.0-90"; sha256="1g36m06hp2fxxwv155bwbqlf97xhcia1lmg3axg6d74kgpns8lg8"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; + caret = derive2 { name="caret"; version="6.0-91"; sha256="1kbx51cf71z2x19a0jflwnhx5jd9wk9q9203kzdxlqw5izdjvmdz"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.1"; sha256="127gqd23xjis62irqviihzk80zydrdplwh65zcmd7ng29ih5wnby"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; caretForecast = derive2 { name="caretForecast"; version="0.0.2"; sha256="1vnmwamgj5g7i2285krwi2m7p4jzvi7zk6bzqbj2jsblhbhdmf0i"; depends=[caret forecast magrittr]; }; carfima = derive2 { name="carfima"; version="2.0.2"; sha256="1n68jqn42m54xn7jq8qywrpnvggrcsgvgnlqg6nw0pgiplbkynih"; depends=[DEoptim invgamma mvtnorm pracma truncnorm]; }; @@ -6974,11 +6989,11 @@ in with self; { carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; cartogram = derive2 { name="cartogram"; version="0.2.2"; sha256="0kz8hwdr5n8llkylwaixnb66f4pzaxxniz57spxhqizmi6qay7yd"; depends=[packcircles sf]; }; - cartogramR = derive2 { name="cartogramR"; version="1.0-5"; sha256="0rw7501p8hrgml3ih4vaqm5rcyzml2anxz0i4kjch20i2wcbl82c"; depends=[data_table sf]; }; + cartogramR = derive2 { name="cartogramR"; version="1.0-6"; sha256="089bi4lbjh217vpm1v5nb0lr9k4l4rlk8ilnj3mmx5mss11rcahs"; depends=[data_table sf]; }; cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; - casabourse = derive2 { name="casabourse"; version="1.2.0"; sha256="13i8fzcqlld50522x6nlqfpdg9pf1f32l3r98i7c9y38kpf6yg8p"; depends=[gsheet RJSONIO rvest]; }; + casabourse = derive2 { name="casabourse"; version="1.3.0"; sha256="18ghw0ir3cm1jl06m3nwrj2wvlyn221lf0ja4h2pm4jn40sn8p3x"; depends=[gsheet httr rvest]; }; cascadess = derive2 { name="cascadess"; version="0.1.0"; sha256="105m5w8rb8bkzmlc5nwb4g0wl8jgvz63jxq665x4jfq0z78qiwgd"; depends=[crayon htmltools magrittr rlang]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; @@ -6989,7 +7004,7 @@ in with self; { castor = derive2 { name="castor"; version="1.7.2"; sha256="013mxk7r0p41l15slpjx5q3axhj3bd3cx1slpw1c11hlja6v3shn"; depends=[Matrix naturalsort Rcpp RSpectra]; }; cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; }; cat_dt = derive2 { name="cat.dt"; version="0.3.1"; sha256="0qr3azaxs339kfiiyzasc46xz4rb37prdwvdmv0c40cvba6zvapf"; depends=[ggplot2 Matrix Rglpk]; }; - cat2cat = derive2 { name="cat2cat"; version="0.3.1"; sha256="1gh1vnyzgrfr8i2mkjnk8aaxal9ygbjvg28l76ilkrklzrpw1nqj"; depends=[assertthat dplyr MASS progress rlang tidyr]; }; + cat2cat = derive2 { name="cat2cat"; version="0.3.3"; sha256="1vdlyawjia6h262q66gjj04a1fzys7c0g273wvbgmhc528v4fhp9"; depends=[assertthat MASS]; }; catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; }; catR = derive2 { name="catR"; version="3.16"; sha256="1w39dxfzqk065v64qzmfamx8p1njsv13a461s6clagbqmhysmzbx"; depends=[]; }; catSplit = derive2 { name="catSplit"; version="0.1.0"; sha256="0nifbwczfs5g9xxlmqfwvcaxd940k5xmbdmamwlhvgif7myi6xr4"; depends=[caret data_table dplyr farff OpenML rpart stringr]; }; @@ -7005,28 +7020,28 @@ in with self; { catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; cati = derive2 { name="cati"; version="0.99.4"; sha256="02g33kkp97kswiyjsd378zpa3fc9rjk2d9f4l1gdh7pzglabsmgl"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; - catlearn = derive2 { name="catlearn"; version="0.8"; sha256="0vk4amvl6l4cxhfcr9z5glyb752vfsizlzqb14jv04am391xl4qd"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; + catlearn = derive2 { name="catlearn"; version="0.9.1"; sha256="0l7ns9dmgl5k9nmywknna9hi8bmvlijds89pppywd7karksr5i66"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catmaply = derive2 { name="catmaply"; version="0.9.0"; sha256="0x2pzvjjhbwnvj8q1882bvqg895nj2airgmcidkixjmbq267vajz"; depends=[dplyr lubridate magrittr plotly rlang tidyverse]; }; catnet = derive2 { name="catnet"; version="1.15.7"; sha256="015qh9k0jj5plp777j3kl20601qiwadkaqrdb0483h3gwqwy828g"; depends=[]; }; + cats = derive2 { name="cats"; version="1.0.2"; sha256="0snc5vrf8qm53yd42gskhnpp6lfgfkldgpjj3jbcry0wpbfc0dv0"; depends=[doParallel dplyr epitools forcats foreach ggplot2 mvtnorm openxlsx plotly purrr tidyr zoo]; }; catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; causact = derive2 { name="causact"; version="0.4.1"; sha256="1acg73qaldhccc0k5wc76m4hwgzwyhfsm7721bwk5wns1q5l72vs"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph magrittr purrr rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; - causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; }; + causalOT = derive2 { name="causalOT"; version="0.1"; sha256="0dwrpinlar3jjhia96jw2b336zlpw2z9fac9phk0k8xiwak7d7l2"; depends=[approxOT BH lbfgsb3c loo Matrix matrixStats osqp pbapply R6 Rcpp RcppEigen reticulate RSpectra sandwich]; }; causalPAF = derive2 { name="causalPAF"; version="1.2.4"; sha256="1ild77iiibzqbyxk3j20dydwmbrjf66r7qhd2ip2b3x9qbqq5wmh"; depends=[checkmate dagitty dplyr forestplot ggdag ggplot2 gridExtra magrittr MASS reshape2 rlist]; }; causaldata = derive2 { name="causaldata"; version="0.1.3"; sha256="1v5apihm9005j1kf3p1d28v6jaqx87ryc43kjhwd5mvvm10rmflc"; depends=[tibble]; }; causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; }; causaleffect = derive2 { name="causaleffect"; version="1.3.13"; sha256="1b238cv24vf91wwgfzb4wdrxx2dywhhsd1hlr7ps0mj4dv8li2xk"; depends=[igraph]; }; - causaloptim = derive2 { name="causaloptim"; version="0.9.1"; sha256="05491b1q1z9cwwx284liyf30zag6a10m9xf2ibxhmsp5gisndf1p"; depends=[igraph rcdd Rcpp shiny]; }; + causaloptim = derive2 { name="causaloptim"; version="0.9.2"; sha256="02d5rrs1h80c49664bicqh7il6x1r4wfid9791si7a35jz8gq0h2"; depends=[igraph rcdd Rcpp shiny]; }; causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; }; causalweight = derive2 { name="causalweight"; version="1.0.2"; sha256="1l9wxp2p87qqv4fw4phbqicyppr3wcrxs52rxjxzdf11v9awnvjh"; depends=[e1071 fastDummies glmnet hdm LARF mvtnorm np ranger SuperLearner xgboost]; }; - caviarpd = derive2 { name="caviarpd"; version="0.2.17"; sha256="0wr99wndfr94dlzjxpf0pvc39zfw015srab8bdjpz3wbhcv23jni"; depends=[cluster salso]; }; + caviarpd = derive2 { name="caviarpd"; version="0.2.28"; sha256="08j739b0dmq6s8gjhzrjrhf5ni4fyygamjsyylrdq6cj6xkgb2m0"; depends=[]; }; cba = derive2 { name="cba"; version="0.2-21"; sha256="0j2hbp0xlfp28gqgnkcvmb4yp1kc5m2bp5x7pr4m1pz2b1s7h7m6"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; - cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; }; cbinom = derive2 { name="cbinom"; version="1.6"; sha256="1vi2kjlss4fmra1h8r6xgk4y66gzpdp61hcyzby2rqji93sib195"; depends=[Rcpp]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; }; @@ -7059,14 +7074,14 @@ in with self; { cd = derive2 { name="cd"; version="0.1.0"; sha256="1zzhkrsidny5h6jvbip2a4i4klqdgw7s1w8h8hkc3mpbxjfr615r"; depends=[]; }; cdata = derive2 { name="cdata"; version="1.2.0"; sha256="0n1abljjvbmbgi9i8k7vbma92r21w50rz6jys39gq62hy3qr6vzl"; depends=[rqdatatable rquery wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; - cdcatR = derive2 { name="cdcatR"; version="1.0.3"; sha256="12irmnms9w5pkwixi8wzy2abxzrnqv3nsmj87ppw24j16cziy35i"; depends=[cowplot doSNOW foreach GDINA ggplot2 NPCD]; }; + cdcatR = derive2 { name="cdcatR"; version="1.0.5"; sha256="1gh39xh4060nni9p0gb5c20xkx5la47l3qi4bw036n1nc61s6nk4"; depends=[cdmTools cowplot doSNOW foreach GDINA ggplot2 NPCD]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.9.4"; sha256="1b8x66vf34hh8r1fdk16kwcmrzw34z64fvaax7ypiihc9xf1askp"; depends=[dplyr httr jsonlite MMWRweek progress purrr readr sf tibble units xml2]; }; cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cder = derive2 { name="cder"; version="0.2-2"; sha256="0aw2c170sqx2y4iz16avqijahwxlsaz590mxvsx4bicfd8nrcynk"; depends=[curl dplyr glue lubridate readr rlang stringr tibble]; }; - cdfquantreg = derive2 { name="cdfquantreg"; version="1.2.5"; sha256="04vckffv6iwsz4s3imkij5nvm64p3faakbhr9cmvlx5rs5g8plw4"; depends=[Formula MASS pracma]; }; + cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.0"; sha256="0dl20a447bdvwgkhkgh2h8ngsvblxidyrsmz5ggb9dhy0msg1hgr"; depends=[Formula MASS pracma]; }; cdlTools = derive2 { name="cdlTools"; version="0.15"; sha256="1p5d48v6nwlrgqqi0sg98zfhiycjcha6g12a7515xrvp6f5p28jn"; depends=[httr raster]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; - cdmTools = derive2 { name="cdmTools"; version="1.0.0"; sha256="1f131ix3b9np3g81yn172giglrahg9k67c3l7i5kpscfp4qp844z"; depends=[combinat GDINA ggplot2 GPArotation psych sirt]; }; + cdmTools = derive2 { name="cdmTools"; version="1.0.1"; sha256="0889vc7glb4jfkwaf5jr3kqkyx6qrpjaplgpfdis2bd7xv46y47i"; depends=[combinat GDINA ggplot2 GPArotation NPCD psych sirt]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.1"; sha256="0ym2ypw4bsvmx9q4vskrq4pdd92y47vs8pay8san40rgzwqr2agb"; depends=[data_table freqparcoord partools plotly]; }; cdrcR = derive2 { name="cdrcR"; version="0.0.1"; sha256="1z6z27rnqg07i5j09q0xwy9bvwci1vc2vijp6r733diivyhcraiv"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect urltools]; }; @@ -7078,9 +7093,9 @@ in with self; { celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; - cellWise = derive2 { name="cellWise"; version="2.2.5"; sha256="0w0n5l1icyjrz7hk61zmdphx48w6d1ldn8h9br4g6k85m4zq57h6"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; + cellWise = derive2 { name="cellWise"; version="2.2.6"; sha256="06j2m24q5zyickxi769d1r2ndlcq8hrmp8xb5795ppxnc6hbq418"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; - celltrackR = derive2 { name="celltrackR"; version="0.3.1"; sha256="1mnqaklc3rkx5mm41n99ky11bjs4l0dppapkwfvkyg3a0h0xzsbb"; depends=[ellipse]; }; + celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; cem = derive2 { name="cem"; version="1.1.29"; sha256="1awb3y1r18mkvwl0rr41a8zcvbwg8b00k010096asz3qywzaxiql"; depends=[combinat lattice MatchIt nlme randomForest]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; @@ -7101,7 +7116,7 @@ in with self; { cepR = derive2 { name="cepR"; version="0.1.2"; sha256="02dj6vyfgc0lsgclbsmzpms1hnnwb3yjdayim7b7vpciym2c8ww3"; depends=[dplyr httr magrittr purrr tibble]; }; cepiigeodist = derive2 { name="cepiigeodist"; version="0.1"; sha256="0i1i8hyl4bkcyxrrfqs3m9yny33w0i33409f4kx83wfnablc54sv"; depends=[]; }; cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; - cepreader = derive2 { name="cepreader"; version="1.2-0"; sha256="0ip1xxs0frcg08fnfxsxr39ldqgb2hmdrzh1lzdrbmr5ja4igf0x"; depends=[Matrix]; }; + cepreader = derive2 { name="cepreader"; version="1.2-1"; sha256="1aaphyvwi9lf8dl56ssq7fhzhh02fkgp4igi3cbr54b6zyv8nnks"; depends=[Matrix]; }; ceramic = derive2 { name="ceramic"; version="0.6.0"; sha256="0n0l1b7gb05kqjrh696faq868q3nbwlg34y6wgr0w205kdq6qs17"; depends=[curl dplyr fs glue jpeg magrittr png purrr rappdirs raster reproj rlang slippymath sp spex tibble]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; cesR = derive2 { name="cesR"; version="0.1.0"; sha256="1sw5is461mrylmd8f9qzps368wilrgy41k6cmig445261zzqkikr"; depends=[dplyr haven labelled readr tidyr]; }; @@ -7135,7 +7150,7 @@ in with self; { chameleon = derive2 { name="chameleon"; version="0.2-0"; sha256="1q631l40gdknbv7dzvzgfdi0mx7rs4hlfkimhvf6li6ajmmh3sa5"; depends=[clue ggplot2 umap]; }; chandwich = derive2 { name="chandwich"; version="1.1.5"; sha256="1i3gg3ib4j33i5f3a6x9k2g8d5ccbdmv2pb2bdhiwwsjy8bfmsvq"; depends=[numDeriv]; }; changedetection = derive2 { name="changedetection"; version="0.2.0"; sha256="0j8x7qyna7qgjhx56yxav1g3wj3r47zvx2hivybsjis2gqbl82hr"; depends=[glmnet L1pack Rdpack]; }; - changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; + changepoint = derive2 { name="changepoint"; version="2.2.3"; sha256="1hpdxz9kqgvn5059sj2pmr7bg208ba950aidy256lad5hdjz2mcj"; depends=[zoo]; }; changepoint_geo = derive2 { name="changepoint.geo"; version="1.0.1"; sha256="1jlixdrq97n6bh09jq3hamlwkqfqbmqs14kr8swx20f8fvfr3fj2"; depends=[changepoint changepoint_np ggplot2 Rdpack]; }; changepoint_influence = derive2 { name="changepoint.influence"; version="1.0.1"; sha256="03m7vyqy0qdvkrr0cgxc2g019rjkmsc0fwnzkp2gxbbhvwhs4qzd"; depends=[changepoint data_table ggplot2 gridExtra reshape]; }; changepoint_mv = derive2 { name="changepoint.mv"; version="1.0.2"; sha256="0bji0m4ks2lf9s1rnq58w97ywpgs3m9rpm5p5f70f0kn33yffrix"; depends=[assertive ggplot2 Rcpp Rdpack reshape2 tbart zoo]; }; @@ -7148,7 +7163,6 @@ in with self; { chantrics = derive2 { name="chantrics"; version="1.0.0"; sha256="0123mbdr4bkkp8w9w15bg9qxkbpd6nyp602fw690zsy1dyimm78k"; depends=[AER chandwich lmtest progress purrr rlang sandwich]; }; charlatan = derive2 { name="charlatan"; version="0.4.0"; sha256="0hrc4kdympi05j6gx0x6vy4jb1mvxxi7pcrnpzcp8vxvd6r3wjmq"; depends=[R6 tibble whisker]; }; chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; - cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; }; cheatsheet = derive2 { name="cheatsheet"; version="0.1.0"; sha256="1vnkpmf2iahgj1j6f5jvjiamvsgsamy4kdnskc70s4584d5m00p7"; depends=[cli crayon fs git2r magrittr purrr rappdirs rstudioapi stringr]; }; cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; }; @@ -7159,8 +7173,9 @@ in with self; { checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-636"; sha256="1lf39v0p583jgiyb02vx0rgbwzmmhgkfpwjib2fzh9ffbs8bfk66"; depends=[]; }; + cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.1"; sha256="1r4n9li33am0bsyl57kzg1m9g4w0pzbw6garcdp3qk7lwqxy2y26"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; - chemCal = derive2 { name="chemCal"; version="0.2.2"; sha256="1g0wvw929s3m9ga8n5rn1xfknjpfidyz63q9ypva81057jc5iakk"; depends=[]; }; + chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; chemmodlab = derive2 { name="chemmodlab"; version="1.1.0"; sha256="0b7qwysqzvhhyxdvvr6lb65aqwhrh1a2wk3p5xplnfjxpy9gh7lm"; depends=[caret class e1071 elasticnet fingerprint lars MASS MSQC nnet pls pROC randomForest rcdk rpart tree]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-14"; sha256="03ipvd2ldzk7xsalkgcx0cyp9cp9b8qqjvz8nl0am412j3z9i5wg"; depends=[bitops hommel lpSolve]; }; @@ -7169,7 +7184,6 @@ in with self; { chessR = derive2 { name="chessR"; version="1.5.0"; sha256="0ikpr4xaysnjzclj1x9lq8fm7rak2z5y3wn9494dk6lgwmk3hrr6"; depends=[curl dplyr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; }; chest = derive2 { name="chest"; version="0.3.6"; sha256="12n65l4r85cr16c3p2w1krnqnxkvalrpi8xnbzw4y2m0sp42ydgl"; depends=[broom dplyr forestplot ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; - chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; @@ -7182,10 +7196,10 @@ in with self; { chipPCR = derive2 { name="chipPCR"; version="1.0-2"; sha256="0q30ncnvbipvqbpxrx2yb68i2ybdfl1fbzj3f12dd2wmjjl72q1x"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chirps = derive2 { name="chirps"; version="0.1.4"; sha256="1yj91rvcsfsr2nmvk7qnxwfkbiblm4bdazs2p83g8ax4fwkrp39c"; depends=[httr jsonlite sf terra]; }; chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; - chisquare = derive2 { name="chisquare"; version="0.1"; sha256="000y0wk2gh6yd4bh2n50v6zjr19ims6g7v7a1jc89iccqcgnff43"; depends=[formattable]; }; + chisquare = derive2 { name="chisquare"; version="0.3"; sha256="1cfarwvzz20f7sxbjhlxzrkg2p9vf51v4m50j96vwdlz4ng4cr5m"; depends=[gt]; }; chk = derive2 { name="chk"; version="0.8.0"; sha256="10gcv00mgi88vgxr9jrs0ar67crmdcdi4m9g86cm6pg3ly0v097y"; depends=[lifecycle rlang]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.2.0"; sha256="0w7v6xk3vyf9dyf9bh5v9516v78yhcdvy7h1140pg2yw8xmfyr0r"; depends=[]; }; - chngpt = derive2 { name="chngpt"; version="2021.5-12"; sha256="00g724b0w7dd95s2k9x10yi9xz2qfkxrpa98npbfq2w1pb8mgc57"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; + chngpt = derive2 { name="chngpt"; version="2022.4-6"; sha256="1jfmbrzafid6xyf658qwwvfxxdzcwj0dwplgn9qclz1rwm634ky6"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.7.9"; sha256="1d2z41f9vh79dk2ic2rzj4g6sdccm4vfimwq0wc8j2s7bad1gv1g"; depends=[deldir ggplot2 HistData igraph KernSmooth pracma raster RColorBrewer sp threejs TSP viridisLite]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; @@ -7197,7 +7211,7 @@ in with self; { chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; }; christmas = derive2 { name="christmas"; version="1.1.1"; sha256="0lxz71vbfqngkn4mg0c74ainww3vbzn8f4s5kmnw5bsd2mmwism7"; depends=[animation]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; - chromoMap = derive2 { name="chromoMap"; version="0.4.1"; sha256="0iiiwxzbq2d3vrzijgw1ahrw1zkk55bvp2g31jjfzzff3xs05h23"; depends=[htmltools htmlwidgets]; }; + chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; chron = derive2 { name="chron"; version="2.3-56"; sha256="0p9zz96jfyf139924hdwkzhr8knkjvx6547ac53rknm3a6wwngl6"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; @@ -7260,7 +7274,7 @@ in with self; { clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; cleanNLP = derive2 { name="cleanNLP"; version="3.0.3"; sha256="0bc0ya36yhknqhqc76yf9clgiacyb6zypzirzg6i0213bqw2ihdp"; depends=[Matrix reticulate stringi udpipe]; }; cleanTS = derive2 { name="cleanTS"; version="0.1.0"; sha256="0axrc6ax2d37mlx2cix9jbk9j2ksa86g074w70lymvl40f0zaz41"; depends=[anomalize data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble tibbletime transformr]; }; - cleancall = derive2 { name="cleancall"; version="0.1.1"; sha256="1gq7bjywgslybfk97k3fxglp6j78a0cklaammccvffs3b94i4zh4"; depends=[]; }; + cleancall = derive2 { name="cleancall"; version="0.1.2"; sha256="1p2n7zqkg93xvhp6w2l37ifazrfpxv975bnzsd3m0j62l1ywzxax"; depends=[]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; cleaner = derive2 { name="cleaner"; version="1.5.3"; sha256="0glrymsfqh3lq9n0xr202i30jm6lqwgcj0r8czy0a3066qh7hjbm"; depends=[backports crayon knitr pillar rlang vctrs]; }; cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; }; @@ -7305,7 +7319,7 @@ in with self; { clogitL1 = derive2 { name="clogitL1"; version="1.5"; sha256="0y6a6s5l98i0vrj66biwr17g6pzpmm5kfz4c57af0yhv7c4s4was"; depends=[Rcpp]; }; clogitLasso = derive2 { name="clogitLasso"; version="1.1"; sha256="1j2kscd6d1jham6yqx5rp78x5vfj2faylkxkbcjaqbynlnqbbxd0"; depends=[foreach lassoshooting]; }; clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; }; - clordr = derive2 { name="clordr"; version="1.6.0"; sha256="1w9km87wndr4fssfn7c9g2sy5lnk1ik0sqqwqyas7qc2h48la4di"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm ttutils]; }; + clordr = derive2 { name="clordr"; version="1.7.0"; sha256="0lrws22aijsfdr595g2dfxsvnvbq6bs18glbdc07qkb27kcpvv1p"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; cloudos = derive2 { name="cloudos"; version="0.3.0"; sha256="1rb82p77ipwvc57h46ph9gy0p6a4sq6mcz1cmq29jhs5by87kr21"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble tidyr]; }; @@ -7324,7 +7338,7 @@ in with self; { clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; clustMixType = derive2 { name="clustMixType"; version="0.2-15"; sha256="1m43xhqc7jcdj1h5nlp0daz99s1nfss7rwwjn7qqf1hvscblyp3s"; depends=[RColorBrewer tibble]; }; clustcurv = derive2 { name="clustcurv"; version="2.0.1"; sha256="1xkl84pd1a3phl5yfm21yr5c0gbmmg1wk9b0lyl2x8466v5hl53q"; depends=[doParallel doRNG foreach ggfortify ggplot2 Gmedian npregfast RColorBrewer survival]; }; - cluster = derive2 { name="cluster"; version="2.1.2"; sha256="168l653ygkg21fwrqrf7lsqi5p6jzhgmcvhrwv7lznkdzdhag2jw"; depends=[]; }; + cluster = derive2 { name="cluster"; version="2.1.3"; sha256="1ab466lniykz2a6kdnrbkk7hwair79xfmy6cqvhc8d6nana7mbd3"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; clusterCons = derive2 { name="clusterCons"; version="1.2"; sha256="1k1y6cqpb5fyi2mbx2i4jbiwz0fni44lnq0xnv3pl0x3dpscwh6q"; depends=[apcluster cluster lattice RColorBrewer]; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; }; @@ -7351,7 +7365,7 @@ in with self; { clv = derive2 { name="clv"; version="0.3-2.2"; sha256="072jn3xh6ii7vfp0gx03k1hiafnla1lkyn5hpj17nmqc0jvzp683"; depends=[class cluster]; }; cmR = derive2 { name="cmR"; version="1.0.3"; sha256="0ml7ip9zxljpgzksbxd15q890q062nf0q81d272dhiizxvr4a0cn"; depends=[fields Matrix]; }; cmaRs = derive2 { name="cmaRs"; version="0.1.1"; sha256="0y9p1r58q45adsb60fvdvqn6m0a6ad32vl15fsy9l83r7aimcwci"; depends=[AUC earth Matrix Rmosek Ryacas0 stringr]; }; - cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; + cmaes = derive2 { name="cmaes"; version="1.0-12"; sha256="0wk8zkf585ipnxajmibip85cyz7wc5br0cph3cvnacbh7yf2zvay"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; cmcR = derive2 { name="cmcR"; version="0.1.9"; sha256="06pw7lbp85xfnglcc86h1b4ipy1igvf43ihpqm9m67d4jc9r6acs"; depends=[assertthat dplyr ggnewscale ggplot2 imager magrittr purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; @@ -7369,9 +7383,9 @@ in with self; { cmpsR = derive2 { name="cmpsR"; version="0.1.0"; sha256="0gxngq2awpignkdwi5cn6gxwk0q2fi3zy55jg5mlkihz2sq9iyyg"; depends=[assertthat dplyr ggplot2 rlang]; }; cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; }; cms = derive2 { name="cms"; version="0.1.0"; sha256="0m3cxvw40nyr1jpdkhg5nbms16hkzj0mrx5nl39x1l42cx2hcjrl"; depends=[assertthat dplyr magrittr readr rlang rvest xml2]; }; - cmsaf = derive2 { name="cmsaf"; version="3.4.0"; sha256="1j5ajahk5vx15ii1zsldm7aikqhlhm3gl7gx6ykx3lxjbanp5hv8"; depends=[cmsafops cmsafvis colorspace colourpicker data_table fields FNN mapproj maps maptools ncdf4 R_utils raster rworldxtra SearchTrees shiny shinyFiles shinyjs shinythemes sp xml2]; }; - cmsafops = derive2 { name="cmsafops"; version="1.2.3"; sha256="194y5i54vbqlmjmf5dfcq0lxffavnnv9vp9b8cafs2zlh6xyxl4j"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees sp trend]; }; - cmsafvis = derive2 { name="cmsafvis"; version="1.1.10"; sha256="0jfb6jvv6jncl5625sskqn6v3aqs4283swg9py71i0jv55bzd0ws"; depends=[animation assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps maptools ncdf4 png progress raster rasterVis RColorBrewer rgdal rworldxtra SearchTrees sp yaml]; }; + cmsaf = derive2 { name="cmsaf"; version="3.4.2"; sha256="1ynxjqc0h4m738hds7a2p402i482pmqj2ghj31jr0916plyi3din"; depends=[cmsafops cmsafvis colorspace colourpicker data_table fields FNN mapproj maps maptools ncdf4 R_utils raster rworldxtra SearchTrees shiny shinyFiles shinyjs shinythemes shinyWidgets sp xml2]; }; + cmsafops = derive2 { name="cmsafops"; version="1.2.4"; sha256="16405lqk5q54ngz7fs9fvf8jg0pnx56rk80cnl0mcacrgm8lvnni"; depends=[assertthat fields FNN ncdf4 progress rainfarmr raster SearchTrees sp trend]; }; + cmsafvis = derive2 { name="cmsafvis"; version="1.1.11"; sha256="152w5acj49xc188b56myzckl6mylb2wwqi99lhhaz6599xhl8rjx"; depends=[animation assertthat cmsafops colorspace countrycode fields gridExtra mapproj maps maptools ncdf4 png progress raster rasterVis RColorBrewer rgdal rworldxtra SearchTrees sp yaml]; }; cmstatr = derive2 { name="cmstatr"; version="0.9.1"; sha256="18kcrnbi3r8n8d7s8cl55r2n41cv4q4h6g8lf4pdkv06axg3l7ad"; depends=[dplyr generics ggplot2 kSamples MASS purrr rlang tibble]; }; cmtest = derive2 { name="cmtest"; version="0.1-2"; sha256="1qff6vx0c9sw4xm7fwhck165snrahlmi91na64f7axad14qmp34d"; depends=[Rdpack]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-7"; sha256="0zi4adh3gd8nbcnsn9fqiiqi5pc2jx782vw394gi988vyngqr7cq"; depends=[elliptic emulator]; }; @@ -7395,7 +7409,8 @@ in with self; { cocorresp = derive2 { name="cocorresp"; version="0.4-3"; sha256="0lqab8f0l24hdvgnfrvvzpi969f35g5i95mq3vj7kxx0xhhz1z08"; depends=[vegan]; }; cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; }; coda = derive2 { name="coda"; version="0.19-4"; sha256="13z5dwfpnyyhpsbpg4xr9g5c1685jhqj90f4x4qkcykr6kykqba2"; depends=[lattice]; }; - coda_base = derive2 { name="coda.base"; version="0.3.1"; sha256="0rz0hlhww9ja1y40yi4fah468apwp1xcnbbl1qmfggil863l5fqa"; depends=[Rcpp RcppArmadillo]; }; + coda_base = derive2 { name="coda.base"; version="0.4.1"; sha256="0vxxdc7r55w8n3xcrl7vmm3pylg4k69bxx86y9jrg6343cm8j3q9"; depends=[Rcpp RcppArmadillo]; }; + coda4microbiome = derive2 { name="coda4microbiome"; version="0.1.1"; sha256="0ckd20wajqj2mxz7l8w12pvc54xys0a9fg0h2qw7kjbhgx5hmi6j"; depends=[corrplot ggplot2 ggpubr glmnet plyr pROC qpdf]; }; codacore = derive2 { name="codacore"; version="0.0.3"; sha256="1zfzhpax625qpj8s9i91pxljkmszgkxj7n0brz9pd9n84r66vr90"; depends=[gtools keras pROC R6 tensorflow]; }; codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codalm = derive2 { name="codalm"; version="0.1.2"; sha256="09q7i96wga55xl8wwkb4i2sisn97wd21zqpmasykpi1aamzysqki"; depends=[future future_apply SQUAREM]; }; @@ -7403,7 +7418,7 @@ in with self; { codebook = derive2 { name="codebook"; version="0.9.2"; sha256="0hxyzwpjbvfzad8h2428q94m961mmwvv28nagw2d36qxd10awh16"; depends=[dplyr forcats ggplot2 glue haven htmltools jsonlite knitr labeling labelled likert purrr rlang rmdpartials skimr stringr tibble tidyr tidyselect vctrs]; }; codebreaker = derive2 { name="codebreaker"; version="0.0.2"; sha256="12gjaziwzzisx4j70z8k17k6i5wdsdyk542yfx04rin4ks829f34"; depends=[beepr cli]; }; codemeta = derive2 { name="codemeta"; version="0.1.1"; sha256="0pcip5ycgkva5pg20fcc3vsb09dv4j57yqvbf5x8bdsxa5vpg11a"; depends=[desc jsonlite]; }; - codemetar = derive2 { name="codemetar"; version="0.3.3"; sha256="0aayywmv7c7mrn7g9jymp8h571ai8cmf8zfg7sxmp3rybv3ha17b"; depends=[cli codemeta commonmark crul desc gert gh jsonlite magrittr memoise pingr purrr remotes sessioninfo urltools xml2]; }; + codemetar = derive2 { name="codemetar"; version="0.3.4"; sha256="0v21g94ncb5yxq6cbiy5ppjij05199b137wrbxpqr6znrjl3sv6q"; depends=[cli codemeta commonmark crul desc gert gh jsonlite magrittr memoise pingr purrr remotes sessioninfo urltools xml2]; }; codename = derive2 { name="codename"; version="0.4.0"; sha256="196xd326ps6yqb1kr1mckfxpb076p0z4kz15cpa12w2psdwy8ba4"; depends=[]; }; codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; }; coder = derive2 { name="coder"; version="0.13.5"; sha256="155rv52rxalnf8yns1p5zh590r6j1q8h38m3fk8xvqx0gyk8fbrz"; depends=[data_table decoder generics tibble]; }; @@ -7475,6 +7490,7 @@ in with self; { comFuncs = derive2 { name="comFuncs"; version="0.0.5"; sha256="1n17s28rf6jbii8cffzxylp5dr47x4my7chvf2j1zh4vrkml0n1n"; depends=[rstudioapi shiny]; }; comat = derive2 { name="comat"; version="0.9.3"; sha256="0igcqvz1sjprxw6qf3wy9awywx9g5xcdkr9sl3vb61jyxxppnagh"; depends=[Rcpp RcppArmadillo]; }; comato = derive2 { name="comato"; version="1.1"; sha256="0lidwr5vw10655p7q0iqzq3phq5y1i86w3bjdv87cwx3m6333bz6"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; + combinIT = derive2 { name="combinIT"; version="1.0.0"; sha256="1fya74vck336lszf3hkfgkzawjfbiivlib01xzsylcs9lc374bgm"; depends=[mvtnorm Rcpp RcppArmadillo]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; combinationpvalues = derive2 { name="combinationpvalues"; version="0.1.4"; sha256="0n5dhgss8mrxshfixpc10g1p7l06hcn3fbk7l9sp92ap64kalz6c"; depends=[chi dplyr spatstat_utils]; }; combinedevents = derive2 { name="combinedevents"; version="0.1.1"; sha256="0fwsxn2ziapax1wy9k57n76z3nxqb22vfbp5r3y6xg3aparxdxpz"; depends=[lubridate magrittr rlang stringr]; }; @@ -7488,13 +7504,13 @@ in with self; { commonmark = derive2 { name="commonmark"; version="1.8.0"; sha256="0s765c650id19ygx57bsjsw93fwxywmp50zid671bkxi6wlyf1vx"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.5"; sha256="1c4lgmggpc22mhwcpy521b2pg8wf4bbjp0a6rbcn0aki90xw9ckk"; depends=[]; }; communication = derive2 { name="communication"; version="0.1"; sha256="08fkllwwcw2llpg5ivxhqghc88qfg1vdy0ciif3xazhhymb8wavb"; depends=[abind diagram GGally ggplot2 gtable gtools igraph magrittr plyr purrr RColorBrewer Rcpp RcppArmadillo reshape2 scales signal tuneR useful wrassp]; }; - comorbidity = derive2 { name="comorbidity"; version="1.0.0"; sha256="0cv3gay7mxba8kr19580dv7vyqlacdybxf5a2y96ll43g64w1gyp"; depends=[checkmate data_table stringi]; }; + comorbidity = derive2 { name="comorbidity"; version="1.0.2"; sha256="1wsiwlh90m8nsb9vrv1pbxpjk5qq51plw34z4dj47mdpbw6lb2ma"; depends=[checkmate data_table stringi]; }; compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; }; compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; - comparator = derive2 { name="comparator"; version="0.1.1"; sha256="02j36dm9vg53v224djy6v7jicd1d5sdx148r8qh096zb942wpvp6"; depends=[clue proxy Rcpp]; }; + comparator = derive2 { name="comparator"; version="0.1.2"; sha256="1mygip50mc3jni1zc6jhjg2mx61sjgdq5w7snqdvv1rycp3fdpb1"; depends=[clue proxy Rcpp]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; - compareDF = derive2 { name="compareDF"; version="2.3.2"; sha256="0s4pwj96cbyrsviaz1yv7pp04xg46b7m6nl2f45gj1zzzg2x571h"; depends=[data_table dplyr htmlTable magrittr openxlsx stringr tibble tidyr]; }; + compareDF = derive2 { name="compareDF"; version="2.3.3"; sha256="1pzrfjwfpdmcfcxh3rnddwdq3vnfq639cvwhvql1vly84p02f1gi"; depends=[data_table dplyr htmlTable openxlsx rlang stringr tibble tidyr]; }; compareGroups = derive2 { name="compareGroups"; version="4.5.1"; sha256="0ll770lj2j6nnjdpkij1wadd2nqppkdjcfglfx13kk5r5ldmfyq1"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparer = derive2 { name="comparer"; version="0.2.2"; sha256="1rhx9an7qi9r3cv2zpnb9qw0byg06zabg99v51mal218080r6rvm"; depends=[R6]; }; @@ -7505,7 +7521,7 @@ in with self; { competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.0"; sha256="0cb298fnivw3hqn99jgxlg7qfjkwy6zs0vgkc3x7vz3alk17p5p1"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; complexNet = derive2 { name="complexNet"; version="0.1.0"; sha256="0jswxr16j7irjbfc5p5vgdaksh3gs8gyx3cwbs0acrpyykxpi5k7"; depends=[]; }; - complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; + complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.7.0"; sha256="0dvkc5y53041agkjz3rl898hkq686pxzr6flf2qx1g3jbza3pk1y"; depends=[boot ggplot2 robustbase scales]; }; compositions = derive2 { name="compositions"; version="2.0-4"; sha256="1bqg0qqzsf92q0jb7hdjycr54bwv8rk7ajhvxgch5yslyqxpm73v"; depends=[bayesm MASS robustbase tensorA]; }; @@ -7518,7 +7534,7 @@ in with self; { con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; - conText = derive2 { name="conText"; version="1.0.0"; sha256="0xf2vy3g7myx3b85vcs7h9plqyy8yhxa1cnldi1jn3x4cmpq5f04"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec]; }; + conText = derive2 { name="conText"; version="1.1.0"; sha256="04zqahx01rqpa6wm4krnr7vfafcxgqblrd911qw7pfwvmjl2w92s"; depends=[dplyr fastDummies ggplot2 Matrix quanteda reshape2 stringr text2vec tidyr]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; concatipede = derive2 { name="concatipede"; version="1.0.1"; sha256="1cmc0pcy9di1bxzj4kgbnvv1avd7xd6jzk43kni7fc5fkcq2jj3x"; depends=[ape dplyr igraph magrittr qualV readxl stringdist stringr tibble writexl]; }; concaveman = derive2 { name="concaveman"; version="1.1.0"; sha256="0b3fx3y60ibb73pqx5591jq1n86242qajfxbz3vzz6rxxspddlcz"; depends=[dplyr jsonlite magrittr sf V8]; }; @@ -7552,8 +7568,9 @@ in with self; { conflicted = derive2 { name="conflicted"; version="1.1.0"; sha256="1qg9ar114r98wm0pnf65mss4v2ksq3924rlpm13mqp4s3p6j9yi4"; depends=[memoise rlang]; }; conflr = derive2 { name="conflr"; version="0.1.1"; sha256="1bjdmvi0n8746g7dxwgzh3fi33sq4bgfr0nd3nqd2caj8ryi2gv9"; depends=[askpass commonmark curl glue httr knitr miniUI purrr R6 rlang rmarkdown rstudioapi shiny stringi xml2]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; - conformalInference_fd = derive2 { name="conformalInference.fd"; version="1.1.0"; sha256="00qdkp70ncwxqgj847yyak3lgfirjh3m81fapjww588hq34wds1v"; depends=[fda future future_apply ggplot2 gridExtra]; }; - conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.0"; sha256="1bixhwm8jrsrixzk80dp8m0kq85pmqjadj2hwwcqc2amyspcfbs7"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; + conformalInference_fd = derive2 { name="conformalInference.fd"; version="1.1.1"; sha256="08r669apkiyjydz9yy9pdiy9rl2wyg50bypvsm9w5i1aryzgmadr"; depends=[fda future future_apply ggnewscale ggplot2 ggpubr scales]; }; + conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.1"; sha256="1xc879ygv9avamy29a6rdfb6pknaz82f3k6392c8a90sgfn3bx3d"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; + conformalbayes = derive2 { name="conformalbayes"; version="0.1.0"; sha256="0k54agyg05jh4pjpmamy5dp67a9f1js304f2589h9jvq26yyd9qa"; depends=[cli loo matrixStats rstantools]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; confreq = derive2 { name="confreq"; version="1.5.6-4"; sha256="0mi6panjdvgpxwpylg6s3bhx9679jpqrxsicb14lq1w6c20rg7qj"; depends=[gmp vcd]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; @@ -7566,10 +7583,10 @@ in with self; { conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.4.5"; sha256="1c2yn3nsvwwglgxghnrybmkcvdc16gxxbcfqfnp70q4h6nz7f65g"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; - conquer = derive2 { name="conquer"; version="1.2.2"; sha256="1z07p4xcrxvnicwgga7hqvqzcxavwirw828285i0xlnz54rqhsc8"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; - conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; + conquer = derive2 { name="conquer"; version="1.3.0"; sha256="1ynmaf7lgqjb8grsifx5dzy29cd5kz4x3yh0abnl2vxdr4c4wddc"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; + conquestr = derive2 { name="conquestr"; version="0.9.96"; sha256="1p0qbc3l557gwc3ch5d4fjj0p9s91j73dg6jl1syszm026zp6pc9"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; - consolechoice = derive2 { name="consolechoice"; version="1.0.0"; sha256="0f1ac4k3w2qkxhzxqsm9v9wanq27g0fr77g63zy84b38c9zkmgch"; depends=[]; }; + consolechoice = derive2 { name="consolechoice"; version="1.1.1"; sha256="06xlwrjc9bj8r2ii160mclg56mw9fw2wzms3q68rcb8ril0hqvd3"; depends=[]; }; consort = derive2 { name="consort"; version="1.0.1"; sha256="16i7hd433f3lfs6saa20m2jk9926r9jaln74333dmx5ld0294q99"; depends=[]; }; consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; @@ -7587,7 +7604,7 @@ in with self; { contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.1"; sha256="1119c7p8ly3zb5pxzgridqvmbq5v0jx557qqaa0rbmdr7rih74aq"; depends=[nlme rms sandwich]; }; - contribution = derive2 { name="contribution"; version="0.2.1"; sha256="1m9bjpmf1ljygjlx3jg8hvnrq6sxx1cscg30dc3phpnj3w55jxln"; depends=[dplyr ggplot2 gh magrittr rlang tidyr]; }; + contribution = derive2 { name="contribution"; version="0.2.2"; sha256="11v179zikr3lr3zdm53zgz43vydcpg29q58qavxmhg5nl60c6581"; depends=[dplyr ggplot2 gh magrittr rlang tidyr]; }; control = derive2 { name="control"; version="0.2.5"; sha256="02s8h5kwpzfrivx3ign84gwlybkcs03ibawyxdny9zz5yhb7x3bs"; depends=[expm Matrix pracma signal]; }; controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; }; convdistr = derive2 { name="convdistr"; version="1.5.3"; sha256="1cp2qpyl0jxp0lwznlc94mcigfgysyq9xmi1z7ihd7jxd9mk8aw9"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; @@ -7679,19 +7696,18 @@ in with self; { countgmifs = derive2 { name="countgmifs"; version="0.0.2"; sha256="0k6fjg0v9n7vi89wd025gdjh1q3l6nnc5yn8i2bfw0i5vmv8rhi3"; depends=[MASS]; }; countrycode = derive2 { name="countrycode"; version="1.3.1"; sha256="1hfw0084f82v4xy2lc88iwxlk0c8vaiybvrx6asadh0922y577aj"; depends=[]; }; countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; - countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; }; covafillr = derive2 { name="covafillr"; version="0.4.4"; sha256="1vsay0qlqcw3l6xp18rxrkhwsadsv9rpxwpj9f4d3vlr8inkiv4h"; depends=[Rcpp RcppEigen]; }; covatest = derive2 { name="covatest"; version="1.2.0"; sha256="13kmkgn2xjci694g27ii9q6xqxqgxw4hykzynxqxn0v7i6y96xwz"; depends=[gstat lubridate sp spacetime zoo]; }; - coveffectsplot = derive2 { name="coveffectsplot"; version="1.0.0"; sha256="0hh7vwz0a0440n8rqn536mg5jw6zrg1gmjzr8i92zipq7llf16jd"; depends=[colourpicker data_table dplyr egg ggplot2 markdown shiny shinyjs shinymeta table1 tidyr]; }; + coveffectsplot = derive2 { name="coveffectsplot"; version="1.0.1"; sha256="1y1daxfrisxgmca3gvfzd586pq90dyqhz4ay8zlsi1m9cax2kkj5"; depends=[colourpicker data_table dplyr egg ggplot2 markdown shiny shinyjs shinymeta table1 tidyr]; }; covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; }; covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; }; covglasso = derive2 { name="covglasso"; version="1.0.3"; sha256="1201z49w7lacf479gp7q2v5lv8vmprppj656zzi5a4yynm7x2sll"; depends=[Rcpp RcppArmadillo]; }; - covid19_analytics = derive2 { name="covid19.analytics"; version="2.1.1"; sha256="13bzxidnwqdnn7j4737csqjnibyq0vs5iy6yd825m3c9xbj3910s"; depends=[ape collapsibleTree deSolve dplyr DT gplots htmlwidgets pheatmap plotly readxl rentrez shiny shinycssloaders shinydashboard]; }; - covid19br = derive2 { name="covid19br"; version="0.1.3"; sha256="1lvmqxccqiy9i5wbxf15zdnqnxlhg6v0b01c3zykjhysq1a1gc5k"; depends=[data_table dplyr rlang sf tidyr]; }; + covid19_analytics = derive2 { name="covid19.analytics"; version="2.1.2"; sha256="0a9gk4s51wjriab2900knwv87j7f926mfgbbn3yvbsyhmgfz3dnm"; depends=[ape collapsibleTree deSolve dplyr DT gplots htmlwidgets pheatmap plotly readxl rentrez shiny shinycssloaders shinydashboard]; }; + covid19br = derive2 { name="covid19br"; version="0.1.4"; sha256="01hyci2mr1716r9wddd7zjzlm2jb03w9qcisrzmpn4g4mglziy83"; depends=[curl data_table dplyr httr rlang sf tidyr]; }; covid19dbcand = derive2 { name="covid19dbcand"; version="0.1.1"; sha256="0864xixdxzaj697al0c2gq3nk05q1pn0pc9lc2dyki71g5r67i7h"; depends=[]; }; covid19france = derive2 { name="covid19france"; version="0.1.0"; sha256="11072mc794l0m84k2b08zhyfvxf6n6ym91i7kkm3cbirxp6bhnqy"; depends=[dplyr glue lubridate magrittr readr stringr tidyr]; }; covid19india = derive2 { name="covid19india"; version="0.1.4"; sha256="18xjgal49rhwif07irb1ad0qvi6c2p1ya52knx0wspb56fv849z1"; depends=[cli data_table EpiEstim glue gt httr janitor magrittr scales stringr]; }; @@ -7699,7 +7715,7 @@ in with self; { covid19sf = derive2 { name="covid19sf"; version="0.1.2"; sha256="0x89j94sg539qc7qd2n2vi8bi1lagqkdc2ss5ld7vj4l78r5zk4l"; depends=[devtools dplyr lubridate magrittr mapview plotly sf]; }; covid19srilanka = derive2 { name="covid19srilanka"; version="1.0.0"; sha256="05hymg0af5cp1pkp222q539941gqrqidjb6xxyhmhc2996yjlxs2"; depends=[tidyverse]; }; covid19swiss = derive2 { name="covid19swiss"; version="0.1.0"; sha256="083j4568j7yk7l4qj6097zp0ijq70ycvwvmbfqp3dwazmibamy34"; depends=[devtools]; }; - covid19us = derive2 { name="covid19us"; version="0.1.7"; sha256="1gy3cbfq89mg0465n4vwqnknnv988i9l2fv6dara8hr1jysic2n3"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; + covid19us = derive2 { name="covid19us"; version="0.1.8"; sha256="1mq57ak8d14lin3fi3asq5ghkf8ypxi1n0kk8m586az4k25i5r8x"; depends=[curl dplyr glue httr lubridate magrittr purrr snakecase stringr tibble tidyr]; }; covidcast = derive2 { name="covidcast"; version="0.4.2"; sha256="1lgpkwhyx8pff2p82w5has1jqmj10kniqd1rkhfxr4b1xp21y8z8"; depends=[dplyr ggplot2 httr MMWRweek purrr rlang sf tidyr]; }; covidprobability = derive2 { name="covidprobability"; version="0.1.0"; sha256="00kiwxhkbq70650azgd6ylh7w7w4h5l8l7rmr2bijlm05xn3g154"; depends=[]; }; covidregionaldata = derive2 { name="covidregionaldata"; version="0.9.3"; sha256="1pq3il8wzygih419avf3nn5swd0z09mf2n0q361w3n7aa2m20yjf"; depends=[countrycode dplyr httr jsonlite lifecycle lubridate memoise purrr R6 readxl rlang stringr tidyr tidyselect vroom xml2]; }; @@ -7718,7 +7734,7 @@ in with self; { coxphSGD = derive2 { name="coxphSGD"; version="0.2.1"; sha256="17ga33v7a89dsygk5yypkz03x7dvjhibnwlvwfvgb2p7djd8w465"; depends=[survival]; }; coxphf = derive2 { name="coxphf"; version="1.13.1"; sha256="06c83v3lrpzm81aclnl1pyqq2kfflbbmcg911blpr7dgynzk0zk5"; depends=[survival]; }; coxphw = derive2 { name="coxphw"; version="4.0.2"; sha256="08bfl21608i5jkk993qjpnh36xbfsm2xx22rpff0v6ipalj9vmj2"; depends=[survival]; }; - coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; }; + coxrobust = derive2 { name="coxrobust"; version="1.0.1"; sha256="1g8z82y12b2lkw4ifxiidmwy3nrvgp2y2cwcahhdg616shwc27sb"; depends=[Rcpp RcppArmadillo survival]; }; coxrt = derive2 { name="coxrt"; version="1.0.3"; sha256="1xggczjx5psl4m4m83vh4y6swnh3pf9rngnzx3268iznfz1g43h2"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; }; coxsei = derive2 { name="coxsei"; version="0.3"; sha256="1k3xsjwv1ji8n2qry2j93svr8a114mxkdl5y2zwz7mp82dmv0ld6"; depends=[]; }; cp4p = derive2 { name="cp4p"; version="0.3.6"; sha256="1zddkkj0ynvfck3kw1682wffbxw0d3dc4flmxxp03lclq70fc8bd"; depends=[limma MESS multtest qvalue]; }; @@ -7729,7 +7745,9 @@ in with self; { cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-9"; sha256="057m61rq2hzb55imj3922zmc9kjxh053k3kgy54a4l0jlxb90lyj"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; + cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; + cpop = derive2 { name="cpop"; version="1.0.0"; sha256="08f3a1pcgcdkn7lxvvrlkajjy38i8v5q071gp7vwvvd71146sjih"; depends=[crops ggplot2 mathjaxr pacman Rcpp Rdpack]; }; cpp11 = derive2 { name="cpp11"; version="0.4.2"; sha256="16cvjfkbc7c0ymdmbcqg9px6pjsqx6qhyfq5frqj739mhazy0g20"; depends=[]; }; cppRouting = derive2 { name="cppRouting"; version="2.0"; sha256="0yfiyg1clnl85lk5ah8dcchv71drk6r093vpl82xnczyan5z94sr"; depends=[data_table Rcpp RcppParallel RcppProgress]; }; cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; @@ -7754,7 +7772,7 @@ in with self; { cranly = derive2 { name="cranly"; version="0.5.4"; sha256="02g3r8y3yj6pajjzzf7akgpjgg6vnv3mp9pqpqcfrrckvmvysm35"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr tm visNetwork wordcloud]; }; crassmat = derive2 { name="crassmat"; version="0.0.6"; sha256="1c4ii34vh8y5b3z2maby4cafb3n2m9bnxv3762cy0z12mbg7zk1s"; depends=[svMisc]; }; crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; - crayon = derive2 { name="crayon"; version="1.5.0"; sha256="0m3rckps0c8v14h9vqnr81acv0az1jqwlsradcbkb2ndvnpjq4j4"; depends=[]; }; + crayon = derive2 { name="crayon"; version="1.5.1"; sha256="1yaxwkmvjaillngfafgapakqjl6s86ly3j338f78xs58g0xwf9f0"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; crctStepdown = derive2 { name="crctStepdown"; version="0.2.1"; sha256="1v6r0w9wrwa7hwyyhzdybv1mshdw3wxa098mbn48101dhhy75945"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; credentials = derive2 { name="credentials"; version="1.3.2"; sha256="1f18j3zrq8c9kah57xwahmmljsjg5qphlgamvx507ynvpq8pryig"; depends=[askpass curl jsonlite openssl sys]; }; @@ -7773,7 +7791,7 @@ in with self; { crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; criticality = derive2 { name="criticality"; version="0.9.1"; sha256="1bi2h56bbrbjybawrxjm724i2rcpla0rmlcf5vp3g5qfmcc4cz15"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; - criticalpath = derive2 { name="criticalpath"; version="0.2.0"; sha256="1bnsmns1zrzfymy1wrbpbs7x1arcc55bqwapvvvjyz3mwxkbi56x"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; + criticalpath = derive2 { name="criticalpath"; version="0.2.1"; sha256="1b8iwvdlq5czd7p7yy6il3irrcarc23cy26vprycnyjll38lcfjz"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; critpath = derive2 { name="critpath"; version="0.1.4"; sha256="1jr5ra8gwzcfnap87z4snb5mmfqq2iaas2x54kqqcsb2gsk3gchs"; depends=[DiagrammeR ggplot2 reshape2]; }; crmPack = derive2 { name="crmPack"; version="1.0.0"; sha256="11zy1ci9d0zjbmc0gws9j9qrnfcqvky1ws9p41wjn0zifcckc5gi"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmReg = derive2 { name="crmReg"; version="1.0.2"; sha256="0y6xb0sxhsqcmcwbkwvk70snwqhxgzl513ld9dp53cm88qdwaj1r"; depends=[FNN ggplot2 gplots pcaPP plyr robustbase rrcov]; }; @@ -7791,14 +7809,14 @@ in with self; { cropgrowdays = derive2 { name="cropgrowdays"; version="0.1.1"; sha256="0jgdfhywnlsz2mxb4skkrxf9fb55qyidd6y6nhb9324jm8d3xl0a"; depends=[dplyr httr lubridate magrittr purrr purrrlyr tibble]; }; crops = derive2 { name="crops"; version="1.0.1"; sha256="153m0mv0hkc8f5kgaa8374z51g0jaq0s0zjbr19x309w1dd3g83g"; depends=[cowplot ggplot2 magrittr memoise pacman Rdpack reshape sets tibble tidyverse]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; - crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; }; + crossdes = derive2 { name="crossdes"; version="1.1-2"; sha256="0nc9jd83mm03qpd3r3hfmrf615yvvmib9kk9dh1hgz12pxhffray"; depends=[AlgDesign gtools]; }; crossmap = derive2 { name="crossmap"; version="0.3.0"; sha256="0dw1sg1by5805l72s5sbldznyp9qph9qrm4sizvqdx74bhb59s1y"; depends=[backports broom dplyr purrr rlang]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.4.1"; sha256="1c3hzmm8s72qsppzh8z3ivf88hlx571jz1pymrzppdikxm9z013h"; depends=[checkmate dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; - crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-1"; sha256="0hxy9c83j8afgf4zg560x21yc4iyb1ykfv6mi1ak5qf5czhnnckf"; depends=[changepoint FDRSeg stepR wbs]; }; + crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-2"; sha256="0gwlpfqk3jsamkdx0sjvn4wmmcrdicgparks298hvi4gjlibp7mc"; depends=[changepoint FDRSeg stepR wbs]; }; crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.2.0"; sha256="1i3a5nagzinsla6p3wjyj3x12gyfqs6vapaqxgr3dh6m727jw5i5"; depends=[gtools VGAM]; }; @@ -7808,7 +7826,7 @@ in with self; { crrcbcv = derive2 { name="crrcbcv"; version="1.0"; sha256="1rbmhnr7n99i0277d47i62ww6896z1g20v6vr558zmx3gvrs0b6k"; depends=[abind crrSC pracma survival]; }; crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; - crs = derive2 { name="crs"; version="0.15-33"; sha256="0zzi3l35r4slq5iplgds4pkw4nf5594i5cwp4jrz5rbncw2vp19a"; depends=[boot np quantreg]; }; + crs = derive2 { name="crs"; version="0.15-34"; sha256="0k4sd1821h4j7hrn3jk66m6n34rj5hp212gj0ff3psxgfmxybxrp"; depends=[boot np quantreg]; }; crseEventStudy = derive2 { name="crseEventStudy"; version="1.2.2"; sha256="0zqqd1d1k200kah03qvpfiyshs18s5h4j8y9mwr0fbhkfj7xags7"; depends=[sandwich]; }; crsmeta = derive2 { name="crsmeta"; version="0.3.0"; sha256="19v0bq80cma74jjl0k42pmlpd5jfv6b0hr7j2iq0d47h50pvrd02"; depends=[]; }; crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; @@ -7817,7 +7835,7 @@ in with self; { crsuggest = derive2 { name="crsuggest"; version="0.3.1"; sha256="13h6hfj3bvdb5wzq1f2m5s9crjmg0ijhfh87y1dmyimv76kr31k6"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="1.2.0"; sha256="133g0skz4lifl8hm8pqdryd2m2drbrm6mdfzbbsrw8fg46di86my"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.29.0"; sha256="0isvz222pivdrbl08284xci38mbz6ldhj8bv0lag3h49zi1k02sv"; depends=[abind crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.29.1"; sha256="04zl3zzdv5ab9aa811pb4p6rdgjiia6jhrjm5knw53shzgn2d84y"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.4.1"; sha256="14wicmlg8vzrqv4wf5xzf37l29ch3cbglbanmgbqdi8p49jpw1cf"; depends=[zoo]; }; @@ -7849,7 +7867,7 @@ in with self; { ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="0.1.3"; sha256="03ns8ckacnz3k5dmyzkhg61wrp7syg1igmp96y4nwkl0z9lz3294"; depends=[dplyr httr jsonlite magrittr readr rlang rvest selectr stringr tibble]; }; + cthist = derive2 { name="cthist"; version="0.1.4"; sha256="1jxzxysyby8jx87hhan3cbihb5vb7269l5dn0i7wycxndp4kxinw"; depends=[dplyr httr jsonlite magrittr readr rlang rvest selectr stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-7"; sha256="1a01rha6sgv8zmcfjb1c438s9d9bjzdjf2pmyml1m5jmz93q70ds"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.1"; sha256="01nflgdyb70kh4f8bnxpavr31fz4fh02kgz2nlx3zzblnm2idbcx"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; @@ -7858,14 +7876,14 @@ in with self; { ctmm = derive2 { name="ctmm"; version="0.6.1"; sha256="1c0pxjm91xcjdhq7mdjgmay9vs8cmk24495sf9g67hfjplf5gzzm"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.8.0"; sha256="15jaxwqhx8fwzsnjgqqxkc6ngd1pqcgn1ffyl1hpwr92p9j7vkf9"; depends=[clipr curl httr jsonlite nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.9.0"; sha256="0p56zmn9sn38y8pasvmxy4vxfryq1v3qp58j7dibrz8hl325xz3x"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.5.5"; sha256="1pgyq5s22gxsx2g42li1rcgf68llc8qv7f2y1abz57rm9maq07yz"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; + ctsem = derive2 { name="ctsem"; version="3.6.0"; sha256="08pxrlzqkl0vs3k67m88633g9hiwfyhsxicfyz290b7dj25gmyhq"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.4"; sha256="1sjsm573alsg3dvj58rwknqapcydx77zbs0b8hcf59qbbhfa3djv"; depends=[ctsem Matrix OpenMx plyr]; }; - ctv = derive2 { name="ctv"; version="0.9-2"; sha256="1fzmsfmcvyhfrqi802s87fxc0x76p7n7azrnybl03kw14vv4k62p"; depends=[]; }; + ctv = derive2 { name="ctv"; version="0.9-3"; sha256="0rwsiipnxjlj3pq97zh2hnbv1jigys32yl3zdp34x9z2xj3v4kg9"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.0.1"; sha256="0vw2iv9inz8md7lz6f1p456wxjc07kap1mvqf58hixqxbrb23dgi"; depends=[date numDeriv relsurv rstpm2 statmod survival]; }; - cubature = derive2 { name="cubature"; version="2.0.4.2"; sha256="0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0"; depends=[Rcpp]; }; + cubature = derive2 { name="cubature"; version="2.0.4.4"; sha256="0sfmcy5xpa40w3qn0jbg7b802wksl5k8glz9jpx77n159wn3nyq8"; depends=[Rcpp]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; @@ -7915,7 +7933,7 @@ in with self; { cwbtools = derive2 { name="cwbtools"; version="0.3.4"; sha256="1wj42n6phniwh6ms5xfmfazd8a0lkaf46wzv916i9xzsaf6hzqr7"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; - cxhull = derive2 { name="cxhull"; version="0.4.0"; sha256="0hgx4y1svx9dcwjx254hmawyswsv17wn7kg2wwg8hyal9qgmh0wa"; depends=[Morpho rgl Rvcg]; }; + cxhull = derive2 { name="cxhull"; version="0.5.0"; sha256="18f5x00z95iszbn5fl5qbbblp4fs0db9xs3mzy9s5y8kb52rsaxz"; depends=[Morpho rgl Rvcg]; }; cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; @@ -7950,9 +7968,10 @@ in with self; { dLagM = derive2 { name="dLagM"; version="1.1.7"; sha256="1i5fwzdscp7wpzbsdvwvak26p0aj0xviisp0aglaa7nrwixx8y0w"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; dMod = derive2 { name="dMod"; version="1.0.2"; sha256="1fnv3f5xlng8f3df5hvxncfnnadzwcsdiklrb2g67llf3m06bq74"; depends=[cOde deSolve doParallel dplyr foreach ggplot2 plyr rootSolve stringr]; }; dPCP = derive2 { name="dPCP"; version="1.0.4"; sha256="1wxni1m9iaak0isc1sl205dnx3v8pzqyj22aj7alzwim6d6a4hjq"; depends=[dbscan e1071 exactci ggplot2 ggpubr raster rlist scales shiny shinyjs stringr]; }; + dQTG_seq = derive2 { name="dQTG.seq"; version="1.0"; sha256="16c25s5i5spdpdbvfa25s4z47wbyffv8jin5jqb0rnx24rbfcwsh"; depends=[BB data_table doParallel foreach openxlsx qtl stringr writexl]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; dTBM = derive2 { name="dTBM"; version="2.0"; sha256="14y0x97gb1345ybvpd4rk0bidlzl613lgrl9pa4y197nhdkqdrx0"; depends=[EnvStats tensorregress WeightedCluster]; }; - daarem = derive2 { name="daarem"; version="0.5"; sha256="167sqp7fnyhwgk7crl3b6m6i8mpn3hmsaqzi4v5ggi48fg19bis7"; depends=[]; }; + daarem = derive2 { name="daarem"; version="0.7"; sha256="1pm8nj4ffc18njpr87hb988j551zp0s6ysr37nk784ibk4awxf7x"; depends=[]; }; dabestr = derive2 { name="dabestr"; version="0.3.0"; sha256="0i4k8h46cw5ds1cammxxli8kpc82ill81xw3izi33lja7wl9vmnw"; depends=[boot cowplot dplyr effsize ellipsis forcats ggbeeswarm ggforce ggplot2 magrittr plyr RColorBrewer rlang simpleboot stringr tibble tidyr]; }; dabr = derive2 { name="dabr"; version="0.0.3"; sha256="1x7vh5s2gd7x62c30hqhs6rbif9jpmfvqzlxlqwc6hc5wqd3x6q6"; depends=[knitr magrittr RMariaDB tibble]; }; dad = derive2 { name="dad"; version="4.0.0"; sha256="154afqf3xwbdjp9qr3rlz06ln2cnwzafk3p9h73k0h2g5n8yp5b9"; depends=[DescTools e1071 ggplot2]; }; @@ -7966,9 +7985,9 @@ in with self; { dagR = derive2 { name="dagR"; version="1.2.0"; sha256="0fkh2cb0sln8sfklcxjr2qf68wjd4gbqkfay0kynvk5jan58f018"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; dagitty = derive2 { name="dagitty"; version="0.3-1"; sha256="1a78g2nr8i7mzzxyb6mfsqqgjyf3s4hwngvyd9vyygzcb79bai3x"; depends=[boot jsonlite MASS V8]; }; - dagwood = derive2 { name="dagwood"; version="0.1.3"; sha256="1z4a02b7z2wihsxm7p19478p3ix0f7j3kly2x43ib5207fh9m1yb"; depends=[dagitty]; }; + dagwood = derive2 { name="dagwood"; version="0.1.4"; sha256="1lp6swfmfzv28cfybmvj7czkfljd0sldv2qqi83q0fwcb7kxgdfz"; depends=[dagitty]; }; daiR = derive2 { name="daiR"; version="0.9.0"; sha256="0kq633jpiagbpsj0190pzpxmz8df6niqc6lwqgrahxfpda798srk"; depends=[base64enc curl fs gargle glue googleCloudStorageR httr jsonlite magick pdftools purrr stringr]; }; - dail = derive2 { name="dail"; version="1.1"; sha256="1j7czlx8j3cfqh11cc5srm86fn5rky28pdj0is31abp5ff05017q"; depends=[dplyr magrittr readr stopwords stringr tidytext]; }; + dail = derive2 { name="dail"; version="1.3"; sha256="081cdy1gvrznv3q7prd16hkf2v9a1ran92krhj8yi8f8s3s02nvc"; depends=[dplyr magrittr readr stopwords stringr tidytext]; }; dalmatian = derive2 { name="dalmatian"; version="1.0.0"; sha256="0hpyg8sl5v87l1hxax9sj863hy9njdyp7hnsaw3cida365p0dswa"; depends=[coda dglm dplyr ggmcmc rlang tidyr]; }; dam = derive2 { name="dam"; version="0.0.1"; sha256="1b0fi3l8jxgpr9fwvi03giq7wm39msbh0c82ffgkh54a3bbf5blc"; depends=[]; }; dampack = derive2 { name="dampack"; version="1.0.1"; sha256="0mh3x0xgcipbd9341x3sfapysrd9m8aaakc1f53vwjj31c8vayqc"; depends=[dplyr ellipse ggplot2 ggrepel mgcv reshape2 scales stringr triangle truncnorm]; }; @@ -7981,7 +8000,7 @@ in with self; { dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; daqapo = derive2 { name="daqapo"; version="0.3.1"; sha256="09fmnpp4nl6n1z834dxzs2v56ba9sfb4mrmc1nrrixxhfsxshmb7"; depends=[bupaR dplyr edeaR glue lubridate magrittr miniUI purrr readr rlang shiny stringdist stringr tidyr xesreadR]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; - dartR = derive2 { name="dartR"; version="1.9.9.1"; sha256="1i2ha796k5xhyzz8q26pygc9hy2ay2b357h50ljfs2rf4np6l0sz"; depends=[adegenet ape crayon devtools dplyr foreach ggplot2 gridExtra HardyWeinberg hierfstat MASS plyr PopGenReport robustbase SNPRelate sp StAMPP stringr tidyr vegan]; }; + dartR = derive2 { name="dartR"; version="2.0.3"; sha256="144vsl8msadxxm4g198y3c2bmr93mqza47q5yibrfyrw3yy8f3a5"; depends=[adegenet ape crayon data_table dplyr fields foreach ggplot2 gridExtra MASS patchwork plyr PopGenReport raster reshape2 shiny SNPRelate sp StAMPP stringr tidyr vegan]; }; dash = derive2 { name="dash"; version="0.9.3"; sha256="1wsvhnvh7sxi4gr88k6kycdr6is8akz9qjy70pl3whykyvx4cjq0"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; @@ -7993,7 +8012,6 @@ in with self; { data_table = derive2 { name="data.table"; version="1.14.2"; sha256="0arx5wna0sh0vf5q8rjhh8nqdmnvg2pdpbhljl9l0x4kwm8vjhgp"; depends=[]; }; data_tree = derive2 { name="data.tree"; version="1.0.0"; sha256="0pizmx2312zsym4m42b97q2184bg3hibvbdrblcga05xln84qrs0"; depends=[R6 stringi]; }; data_validator = derive2 { name="data.validator"; version="0.1.6"; sha256="1qzgwi9agsli96whzsyx7qxqzc5sixpqrd7z6fh4yrcv1i3li8yr"; depends=[assertr dplyr htmltools htmlwidgets knitr purrr R6 rlang rmarkdown shiny shiny_semantic tibble tidyr]; }; - data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; }; dataCompareR = derive2 { name="dataCompareR"; version="0.1.4"; sha256="1rapnlbi43z4sx4rq3fp8kpqhdj4g02fi3xglldbdp0c59f9vacg"; depends=[dplyr knitr markdown stringi]; }; dataMaid = derive2 { name="dataMaid"; version="1.4.1"; sha256="06jywq3llwafjnpklqimra456crdi752zxci6z1w0v7p8blf4vjw"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; @@ -8003,7 +8021,7 @@ in with self; { datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; - dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.0"; sha256="1bl24z9hqhrs3k459b5hprwc7j639myvkx0qbfcyv3hmi7mbsd0q"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; + dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.2"; sha256="0g5ajvd81k5pamvn204rxaiw92k20qqffnia1g6z89lp73spxs0s"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; @@ -8029,7 +8047,7 @@ in with self; { datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.10"; sha256="0fhxzd83hl2qgif8d5caw893i5w2b951yl7a5dmbj69ihcn0xfrg"; depends=[checkmate httr jsonlite readr xml2]; }; - datawizard = derive2 { name="datawizard"; version="0.3.0"; sha256="1jmrkfymh66d0n4256hamvrbqipfl3bl05q618z4flmq2byifibs"; depends=[insight]; }; + datawizard = derive2 { name="datawizard"; version="0.4.0"; sha256="1j26xv1zm7qwp80gy6vlysq3zxdj9r8ivi54b1d6s0ckqkww6gja"; depends=[insight]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; datefixR = derive2 { name="datefixR"; version="0.1.4"; sha256="185lv1dap6xkmyqkv4fjmlmf6w95gm6szi0pps0pfrmcj42ng1fa"; depends=[stringr]; }; datelife = derive2 { name="datelife"; version="0.6.1"; sha256="0fv478ykka6m5j3d6k7265xp76qc78fr7ms9khx349qbylj67306"; depends=[abind ape BiocManager bold cluster compare geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; @@ -8051,7 +8069,7 @@ in with self; { dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; - dbarts = derive2 { name="dbarts"; version="0.9-20"; sha256="0ap9lmkx2z4fgc5b9kws6pgvshkr9ngr1z1qgmivf698h6ayfx8x"; depends=[]; }; + dbarts = derive2 { name="dbarts"; version="0.9-22"; sha256="02hmqzfk9sgz4vndnpnpcav7wlpy9xna8zdnlwgcj4a84zz2pyk8"; depends=[]; }; dbcsp = derive2 { name="dbcsp"; version="0.0.2.0"; sha256="1g4f4l20g9ljm53hvq9caz87fsch6ikqqdmaf856bmc2bh6dckca"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist zoo]; }; dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; dbflobr = derive2 { name="dbflobr"; version="0.2.1"; sha256="0q736fpz18kq18jr8ga1jxh3vggmd7xws0sda83h95gkfx96pf8p"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; @@ -8060,7 +8078,7 @@ in with self; { dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; }; dbmss = derive2 { name="dbmss"; version="2.7-8"; sha256="0zh2ipf089pjib3nikhlqpvdfj13h8j5c49fksrk2mmd7rpfrg15"; depends=[cubature ggplot2 Rcpp RcppParallel reshape2 spatstat_core spatstat_geom spatstat_random spatstat_utils tibble]; }; - dbnR = derive2 { name="dbnR"; version="0.7.1"; sha256="19d6vzsx84xbcmpk57si6pc940m6i8dlaa9163r09i6hndd11rx3"; depends=[bnlearn data_table magrittr R6 Rcpp]; }; + dbnR = derive2 { name="dbnR"; version="0.7.5"; sha256="00y8n3cn8nrnmsnzgqic7i08xbxdzdk06xdmvvvypjspl0g443pn"; depends=[bnlearn data_table magrittr R6 Rcpp]; }; dbnlearn = derive2 { name="dbnlearn"; version="0.1.0"; sha256="0kmyiad7v96mnfi24d2pn3dqmk3g82sx348m1vhhqwijfnj53brb"; depends=[bnlearn bnviewer ggplot2]; }; dbparser = derive2 { name="dbparser"; version="1.2.0"; sha256="06yk6i80xlvrjgi8lpzz82rhhmkbj980vpmpil57acjkfvaznwj6"; depends=[DBI dplyr odbc progress purrr readr RMariaDB RSQLite tibble XML]; }; dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; @@ -8082,7 +8100,7 @@ in with self; { dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.2"; sha256="1v4h480lff1cyjjwb80dksiffh0y4b3s07lq2l2r21rn1l4mav6c"; depends=[Rcpp RcppArmadillo]; }; dcurves = derive2 { name="dcurves"; version="0.2.0"; sha256="0vm1cg6sr152fg5bgy2inf4x42vkbvw9ahy5b1dda8jgc6s7zr9v"; depends=[broom dplyr ggplot2 glue purrr rlang scales survival tibble]; }; - ddalpha = derive2 { name="ddalpha"; version="1.3.11"; sha256="1sdnb47r534nh138zk3a6b2mgi74nvshc7p5m304vjs9jlx4l2y3"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; + ddalpha = derive2 { name="ddalpha"; version="1.3.13"; sha256="1bjfgb3lbzhjb5wx9hzp90jppq7vnj59bmd2n9ymi8sh1570m9p4"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; dde = derive2 { name="dde"; version="1.0.1"; sha256="0qgnxb27a2wnrbfk5v22i985mqhjp4hp05vl1ccsapbxkpf0gqcv"; depends=[ring]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; ddiv = derive2 { name="ddiv"; version="0.1.1"; sha256="0xsn74z78znrm3rnnvdphp89sb0lik564ha3wv6n3ldrfh1van8y"; depends=[MASS qpdf segmented]; }; @@ -8091,8 +8109,8 @@ in with self; { ddpcr = derive2 { name="ddpcr"; version="1.15"; sha256="04q2k6kag3qx9g6iarb84ski7s895xdd20zlaw7wmidfv038kmws"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; - deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; }; - deSolve = derive2 { name="deSolve"; version="1.30"; sha256="0j7mmg1mimdpql8f4i9dn920ciyyq80a5qnc4fq5xn5lyrx5vxir"; depends=[]; }; + deBif = derive2 { name="deBif"; version="0.1.0"; sha256="0gws9g08vfh8sdwan4kxhnzw912rpc9bxcmsl2bjkzmpy1ncyrk5"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; + deSolve = derive2 { name="deSolve"; version="1.31"; sha256="06gsh514msqdmri78969snhgh22d2bzmnkqfgh0s74aprfd93m8r"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; deaR = derive2 { name="deaR"; version="1.2.5"; sha256="1k38j9l6rhw2gkpvz202gsja1jz3p57d8s3iv2nm7ph9000z03p9"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; @@ -8106,7 +8124,7 @@ in with self; { decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; decisionSupport = derive2 { name="decisionSupport"; version="1.110"; sha256="1yqdffrqk18vmna6vv699pa987cd266gihsccs47a2vdhlhgrk2m"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.2.7"; sha256="0ifv6j0kbwayl60bf1rwd1h7424npqsqsvb44ngg7v0ik4bgbyfx"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; - declared = derive2 { name="declared"; version="0.11"; sha256="1m882i1hrz3zv4hawnypl06izv9d3bb16mhdyhb419b5nh2vksyg"; depends=[admisc]; }; + declared = derive2 { name="declared"; version="0.13"; sha256="11wqm1gmzri6ig70vwbfyjix7rkmqdd351b93gw6jlfi1j8rxggi"; depends=[admisc]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -8133,7 +8151,6 @@ in with self; { deepregression = derive2 { name="deepregression"; version="0.1"; sha256="0k062wkhfcnbkg2l09zr56p7fzgxcwllzycmpp4m5swigl6g9z1n"; depends=[dplyr keras magrittr Matrix Metrics mgcv purrr R6 reticulate tensorflow tfprobability tfruns]; }; deeptime = derive2 { name="deeptime"; version="0.2.1"; sha256="1b0ba304950y2w7x8q5ag66fpfv7c4lpcdglf47yfps5nivkjk4n"; depends=[ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; - define = derive2 { name="define"; version="0.2.9"; sha256="0sq7ryiz1py0yw7g2bncd834zsdiy1y7rck8k4grrx2ips5gv2jy"; depends=[encode Hmisc latexpdf SASxport spec]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; }; degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; @@ -8141,7 +8158,6 @@ in with self; { dejaVu = derive2 { name="dejaVu"; version="0.3.0"; sha256="0l30m707zrp05d7hywlx443n02mflxqsampmcblj3fvcbyywc1fd"; depends=[MASS]; }; delayed = derive2 { name="delayed"; version="0.3.0"; sha256="04f4k683jzb763sb9knb81lw8df56y1378g4i3c1x8m83bvj1mhs"; depends=[assertthat BBmisc data_table future igraph progress R6 rlang rstackdeque uuid visNetwork]; }; deldir = derive2 { name="deldir"; version="1.0-6"; sha256="1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd"; depends=[]; }; - delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; deltaccd = derive2 { name="deltaccd"; version="1.0.2"; sha256="1iqyycjfmclr9y8gfj61naxwafjgmfwahyrc110qxzb239b501rw"; depends=[data_table doRNG foreach ggplot2 rlang scales statmod]; }; dematel = derive2 { name="dematel"; version="0.1.0"; sha256="1m84sd46cg7188wnjx09g88xvxdp7i0mdxnynwlqkgcmnwx4bdjw"; depends=[ggplot2 knitr]; }; @@ -8161,10 +8177,9 @@ in with self; { denoiSeq = derive2 { name="denoiSeq"; version="0.1.1"; sha256="18w69gxbnazg5k8bzi76slcqxnbfmrndp548zazz8bpxz3jns699"; depends=[]; }; denoiseR = derive2 { name="denoiseR"; version="1.0.2"; sha256="1q5kxiwfkrf2k0gpidzhl4hyzyjcm33rwlw4dan9nkx1181naw9l"; depends=[FactoMineR irlba Matrix]; }; denovolyzeR = derive2 { name="denovolyzeR"; version="0.2.0"; sha256="03ya5clzqp12lfhw073ri0pwgxn53a6pvnais317a8bv1yinxspb"; depends=[dplyr reshape2]; }; - denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; }; - densEstBayes = derive2 { name="densEstBayes"; version="1.0-2"; sha256="16fb7vkic9q5p8s4f0f215zmb36fcizqr4r2vm9dxxj9rasrg2f3"; depends=[BH MASS nlme Rcpp RcppArmadillo RcppEigen RcppParallel rstan StanHeaders]; }; + densEstBayes = derive2 { name="densEstBayes"; version="1.0-2.1"; sha256="1pzmgn65lv91zg1588qhwczy9f2zgciknlc4l072mvh2i7hncw2b"; depends=[BH MASS nlme Rcpp RcppArmadillo RcppEigen RcppParallel rstan rstantools StanHeaders]; }; denseFLMM = derive2 { name="denseFLMM"; version="0.1.2"; sha256="1lfhd73zvvz6glq41lb2a9x63fjwjfp53zmy9g78fg6gz5lbnbpm"; depends=[MASS Matrix mgcv mvtnorm]; }; - densitr = derive2 { name="densitr"; version="0.1.0"; sha256="1vqdvfka6wdfxqfy2qcacss0h6wxykmwyijr5blpvlpafjdmngaq"; depends=[changepoint]; }; + densitr = derive2 { name="densitr"; version="0.2"; sha256="04k98id4y5b6bdzayzignzyha8l693wk3dsla4abfpdf4wpqs17a"; depends=[changepoint]; }; densityClust = derive2 { name="densityClust"; version="0.3.2"; sha256="05x2fi1zdnkrg2nimf8k904j3lpyw0f7nmk6ax5p7x7a98wb2iqs"; depends=[FNN ggplot2 ggrepel gridExtra RColorBrewer Rcpp Rtsne]; }; densratio = derive2 { name="densratio"; version="0.2.1"; sha256="0x333kfx5mdzzjsqy37j4bmv9iddlgp3wi4774lx8d159lbr6irp"; depends=[]; }; denstrip = derive2 { name="denstrip"; version="1.5.4"; sha256="0hzxphj740q6pfa1q42knr7n12bmnawg7b2fs74msxn83dka5cmq"; depends=[lattice]; }; @@ -8177,7 +8192,7 @@ in with self; { depth = derive2 { name="depth"; version="2.1-1.1"; sha256="0szy0027nh4ps1z919i740i50app5q7cfyg1fj7pdyl45nbl8k6m"; depends=[abind circular rgl]; }; depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; - dequer = derive2 { name="dequer"; version="2.0-1"; sha256="04kzlff8xa733qkkx0gacgig7d4l7yvgqmzva0mj8di12byh214p"; depends=[]; }; + dequer = derive2 { name="dequer"; version="2.0-2"; sha256="0bc1gf5kbp36zxds70l40r4bsa4f1ih11cy7dkxc6yym6hp79789"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.4"; sha256="1ncqhi6f69jv75dad1l9wsrfxi5m2wizywikkbg7i9qmh42xkh8w"; depends=[mnormt]; }; desc = derive2 { name="desc"; version="1.4.1"; sha256="0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg"; depends=[cli R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.6"; sha256="1yznb6j850gap1bacvx5dkh4030x38041ll61z6an6h7j71yyc5p"; depends=[]; }; @@ -8187,7 +8202,7 @@ in with self; { descriptr = derive2 { name="descriptr"; version="0.5.2"; sha256="1shqcykp8ahgarsam56zv4gcbj0mmfm7jy1i9fgbmy5ddksnific"; depends=[dplyr ggplot2 magrittr rlang scales tibble tidyr]; }; descstat = derive2 { name="descstat"; version="0.1-2"; sha256="0q463p0bq80c9lhwfv4imbhgx6f1w2jqm3022p5zvycfa9w39rin"; depends=[cli dplyr forcats magrittr purrr rlang tibble tidyr tidyselect]; }; descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; - desctable = derive2 { name="desctable"; version="0.1.9"; sha256="0ixakd5rs9csq7rm6h8id44qkdg2gn0cg6hwdcwvbvshflbg4jxx"; depends=[dplyr DT htmltools pander]; }; + desctable = derive2 { name="desctable"; version="0.3.0"; sha256="1i0124lnmzdbx468lyqmzbd6disxjifqjy8ss10fl8cin4f868lb"; depends=[dplyr DT htmltools pander rlang tidyr]; }; deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; @@ -8198,7 +8213,7 @@ in with self; { desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; }; desla = derive2 { name="desla"; version="0.1.0"; sha256="12daspn24131gw1hizd169ijxkc8wvfl2xlicd0pwz85j8bbsa95"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; desplot = derive2 { name="desplot"; version="1.9"; sha256="0dg8j3l6x12g4h5hsxwhxvc8i03gwlvm80l03rx3wwqsx070if1y"; depends=[ggplot2 lattice reshape2]; }; - details = derive2 { name="details"; version="0.2.1"; sha256="03fw3jbf1a34w9c205wwjkqnw6ic1gylsf36qw33mx4ba252s2hy"; depends=[clipr desc httr knitr magrittr png withr xml2]; }; + details = derive2 { name="details"; version="0.3.0"; sha256="0mygkmfmfp3a2hgql514zyh4rw3v8i4g4cls6rss0fplg4pskwc7"; depends=[clipr desc htmltools httr knitr magrittr png withr xml2]; }; detect = derive2 { name="detect"; version="0.4-4"; sha256="1gzd98b4kg5rw0kpgznrb1wmr3iavdq5983n6wqx33lga1lqq9d6"; depends=[Formula Matrix pbapply]; }; detectR = derive2 { name="detectR"; version="0.1.0"; sha256="1l93b8xx6xridwcvs15xgfm7w05p3r233rxpakpii3d71rnbs8cy"; depends=[doParallel foreach glasso lavaan LogConcDEAD signal]; }; detectRUNS = derive2 { name="detectRUNS"; version="0.9.6"; sha256="0yl1x0jz66hingbl094picsiyrxzxvnz0grq63rva6nwn7pv1c0b"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; }; @@ -8250,9 +8265,10 @@ in with self; { dialectR = derive2 { name="dialectR"; version="1.0"; sha256="11fd2fdxczlcxkk3pwhiw0vb51bndh9qcfp7pqcfj1z7aga52xk0"; depends=[deldir dplyr dtw ggplot2 ggvoronoi Rcpp RcppProgress reticulate sf tibble]; }; dialr = derive2 { name="dialr"; version="0.4.0"; sha256="1di5b3w1iif8702j5gnkwp55psbgzwb54ccxah3xscy75sg3zmpm"; depends=[dialrjars rJava]; }; dialrjars = derive2 { name="dialrjars"; version="8.12.42"; sha256="0fn2ic9vllar3wgmgvzx4b2sw5sixzfnjmmk71fnmkii2mfp3s38"; depends=[rJava]; }; - dials = derive2 { name="dials"; version="0.1.0"; sha256="02i9ddzi7gk5bwg87x8bpazk89mn102awgxzp9yw85dgbafqsydh"; depends=[DiceDesign dplyr glue hardhat lifecycle purrr rlang scales tibble vctrs withr]; }; + dials = derive2 { name="dials"; version="0.1.1"; sha256="1h695g9vklqn0vd53j9k03s0989xjpjr11h5qhz3a0v6465fwm8a"; depends=[DiceDesign dplyr glue hardhat lifecycle purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; - dibble = derive2 { name="dibble"; version="0.1.0"; sha256="1b1z53w6n1ks3iiz1p2rs7ry9w03g5c8vzx4i3zqaqh16shn8p26"; depends=[dplyr pillar rlang tibble tidyselect vctrs]; }; + diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; + dibble = derive2 { name="dibble"; version="0.1.1"; sha256="0b7nym468d3c0yfh7zimpj8ip92jk9izs5p395lwpgpscgsybfs1"; depends=[dplyr pillar rlang tibble tidyselect vctrs]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; diceR = derive2 { name="diceR"; version="1.1.0"; sha256="01jh69b7x4agw5w2y9dal9g0nbq8s1ff36vcz2xfsjc0vi76irfs"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tidyr yardstick]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; @@ -8260,11 +8276,12 @@ in with self; { dictionaRy = derive2 { name="dictionaRy"; version="0.1.1"; sha256="0j25wn2ghy59y1v02493d4knab06wxrzz8m9g6zxlkqzw1dqgc4f"; depends=[jsonlite tibble]; }; dictionar6 = derive2 { name="dictionar6"; version="0.1.3"; sha256="1rg958py4pqghkid3830hla7vibvwsjhk75x55lxry5d8dp04m9f"; depends=[ooplah R6]; }; did = derive2 { name="did"; version="2.1.1"; sha256="004n56wjmd75sm9hy48m6kbmrzk47zgq3lkzz0mdnpq55am40w5z"; depends=[BMisc DRDID generics ggplot2 ggpubr Matrix pbapply tidyr]; }; - did2s = derive2 { name="did2s"; version="0.4.0"; sha256="0ipp0wk3xx3y0q66469inkw3q9b7x5gdi1bpplng88w0ismkb0di"; depends=[broom cli did didimputation dplyr fixest ggplot2 glue gt magrittr Matrix purrr Rcpp RcppArmadillo rlang rsample staggered stringr tibble tidyr]; }; + did2s = derive2 { name="did2s"; version="0.6.0"; sha256="0nwqrbrvfhabn4y027akiv1792vkds17g4l5jx3y0j8qpyza6xli"; depends=[boot broom cli data_table did didimputation dplyr fixest ggplot2 glue magrittr Matrix purrr Rcpp RcppArmadillo rlang rsample staggered stringr tibble]; }; didimputation = derive2 { name="didimputation"; version="0.1.0"; sha256="0bdvhbxy57a5k7cahrhp8dzcskpbanb11497kg5mbw240ilgh6x3"; depends=[broom dplyr fixest glue magrittr Matrix Rcpp RcppArmadillo rlang stringr]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; }; dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; + diemr = derive2 { name="diemr"; version="1.0"; sha256="1d6pb2lzr2in1ykqfmjigi771njnjhcrkb4m9rw63r5hrn58by9d"; depends=[zoo]; }; dietr = derive2 { name="dietr"; version="1.1.3"; sha256="03kb36377vx90f7zsl167pyjcyaw3chs710z0nx1kajjhcsdzgjp"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; difNLR = derive2 { name="difNLR"; version="1.3.7"; sha256="1fvil2zys3i8raqkmm8s5p6dyxziwcgchxr1m7q69flms6cpg8gv"; depends=[calculus CTT ggplot2 msm nnet plyr reshape2 VGAM]; }; @@ -8290,11 +8307,11 @@ in with self; { diffviewer = derive2 { name="diffviewer"; version="0.1.1"; sha256="01phkaaa0zylyi23siwam18i1ggfgq2m66d69lnz9ips1yh12yca"; depends=[htmlwidgets jsonlite]; }; digest = derive2 { name="digest"; version="0.6.29"; sha256="1ncwc5fwsylwlcp9vhkhszw8m5sifg74apig2m2pf168lha1yb3r"; depends=[]; }; digitTests = derive2 { name="digitTests"; version="0.1.1"; sha256="1q9ksyzvbaq4n47ww7sq0w0arsy1i11b1zlyyzk0g1ks35jlxgpv"; depends=[]; }; - digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="0.1.1"; sha256="083ap03wxmzqynk66gswzilrfd8wrdsrkixdasw1w46pssrab79k"; depends=[dplyr edgeR ggplot2 ggpubr gtools keras Matrix Matrix_utils pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment splatter SummarizedExperiment tensorflow tidyr zinbwave]; }; + digitalDLSorteR = derive2 { name="digitalDLSorteR"; version="0.2.0"; sha256="1n12b5i9hqaqri8bw57c0fazln2cfihanfrk1hrdg5b1cd0dc73x"; depends=[dplyr edgeR ggplot2 ggpubr gtools keras Matrix Matrix_utils pbapply RColorBrewer reshape2 reticulate rlang S4Vectors SingleCellExperiment splatter SummarizedExperiment tensorflow tidyr zinbwave]; }; digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; }; digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; }; dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; }; - dimRed = derive2 { name="dimRed"; version="0.2.4"; sha256="1534axd5gcwma3nbglrn0l2an53n3yyya30fqkgb4d8l124ygb7j"; depends=[DRR magrittr]; }; + dimRed = derive2 { name="dimRed"; version="0.2.5"; sha256="1z8fqdc8mslvfix8ngxs1y2yrvlanp5581hwp2nzldj6mk5kn15b"; depends=[DRR magrittr]; }; dimensio = derive2 { name="dimensio"; version="0.2.2"; sha256="1340z0ibzmnbxghjw5w2afr6agwyz5kcan5hgibfi08y7axpdx4k"; depends=[ggplot2 rlang]; }; dimensionsR = derive2 { name="dimensionsR"; version="0.0.3"; sha256="1bic5ynqapz4mh3bcv58r00ip5s04mc8n58yhlkbrnbcqyqaca4f"; depends=[httr jsonlite]; }; dina = derive2 { name="dina"; version="2.0.0"; sha256="1sq7998xc5qhvd8clc8r32ch7axinh2a2dc7i1w2p148wv130yhd"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; @@ -8302,7 +8319,7 @@ in with self; { dineR = derive2 { name="dineR"; version="1.0.1"; sha256="1nnfg4kylb8ivwij1qdn9qv5jciinl4jk4gghfw97jphp4da91pw"; depends=[MASS Matrix progress]; }; dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; }; dint = derive2 { name="dint"; version="2.1.3"; sha256="0nxppn7gx4sjwn7jns5bwbqfid3jkbsx2lxi0rjdkbsawy77fc85"; depends=[]; }; - dipm = derive2 { name="dipm"; version="1.5"; sha256="1mqannl493mic8qx75qq8147jb6hddsxsk7q8h51zjb3zr6b9hjp"; depends=[ggplot2 partykit survival]; }; + dipm = derive2 { name="dipm"; version="1.6"; sha256="1c6iismnklc2pjcxqly3m7ni90nhcynhrbbiv8hr1gc9sjmx5x6g"; depends=[ggplot2 partykit survival]; }; diproperm = derive2 { name="diproperm"; version="0.2.0"; sha256="0qh8zzpbsjfwh8q833n5pchb6dakqdza77ab7vmsidfbzndka11m"; depends=[dplyr DWDLargeR e1071 ggplot2 gridExtra lemon Matrix sampling SparseM usethis]; }; dipsaus = derive2 { name="dipsaus"; version="0.2.0"; sha256="069l6fv3hxsgsxyg51am2yr6n3vd4kym08f28mn741ik7m1y6yjj"; depends=[base64enc base64url cli digest fastmap future future_apply jsonlite progressr R6 Rcpp RcppParallel rlang rstudioapi shiny startup stringr synchronicity]; }; diptest = derive2 { name="diptest"; version="0.76-0"; sha256="10629vwn6r2949jjrmj5slbb5v0vnm3w0v8mrl7ws68m2sxmx2jh"; depends=[]; }; @@ -8312,7 +8329,7 @@ in with self; { directotree = derive2 { name="directotree"; version="1.0.0"; sha256="1yv703mb3fnvjxr2rrxvb8x869hbbjx4l94qbbsmy0ssknayq60y"; depends=[collapsibleTree data_tree]; }; dirichletprocess = derive2 { name="dirichletprocess"; version="0.4.0"; sha256="1gspaynxq5czvnpni57swcqqy17lryjlh3cn9x0mghl527rkbpna"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; - dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; + dirmult = derive2 { name="dirmult"; version="0.1.3-5"; sha256="05whzhl81nyag7321hw98xa63r440s9bgj1764346yvm9bvzjqi4"; depends=[]; }; disaggR = derive2 { name="disaggR"; version="1.0.3.1"; sha256="1nl19kr14i73c165nagb8crhzn8yr18q21f2i7508n90yl61cnfk"; depends=[RColorBrewer]; }; disaggregation = derive2 { name="disaggregation"; version="0.1.3"; sha256="04wmwwhmcgi1cdr8iyhilsphpzb7r5xs04vhqx5z01y7cgardivx"; depends=[cowplot doParallel dplyr foreach ggplot2 maptools Matrix raster RcppEigen rgdal rgeos sp sparseMVN splancs TMB]; }; disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; }; @@ -8323,7 +8340,7 @@ in with self; { discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.3"; sha256="0hh20ff3szh9s9r1hdymk73ysn0v5lh2gfzgqpvfvdhcc5z8xjk7"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; - discnorm = derive2 { name="discnorm"; version="0.1.1"; sha256="0qqnn9dcsd3wxg358mrri91j913alb2hclj3xl305r6b5dmg1g1m"; depends=[arules lavaan MASS pbivnorm sirt]; }; + discnorm = derive2 { name="discnorm"; version="0.2.0"; sha256="08pgn5lr7qr2i2iyyrpivibd4mr9p5dgg0agbdqgzk5zjchhpk4a"; depends=[arules copula cubature GoFKernel lavaan MASS mnormt pbivnorm sirt]; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="1.1.0"; sha256="0is9gwj09zj25hklsxgi3k7ypq2qp2yx0vir6wgpnd30wa11zs5h"; depends=[]; }; discourseGT = derive2 { name="discourseGT"; version="1.1.7"; sha256="1nfc1v39y4af5l4zmp00dhp4bzp10wq107gx5ggrvpq9q2nn4hwd"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; @@ -8336,7 +8353,6 @@ in with self; { discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrim = derive2 { name="discrim"; version="0.2.0"; sha256="1w8ji9wj2wm8gvzi3w78dcf6jabjzn32hf2saiz1mybix63rpqxd"; depends=[dials parsnip purrr rlang tibble withr]; }; disdat = derive2 { name="disdat"; version="1.0-0"; sha256="1q8v40m0vjni3kx0f04qb99adxcx783p9lfixvvq6viz13v1ygcw"; depends=[]; }; - diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; }; diseq = derive2 { name="diseq"; version="0.4.3"; sha256="1dfcgw1qzw2fax5vzw9fjh72hnim2n4d3wa3nd616vx6ydly216l"; depends=[bbmle dplyr Formula magrittr MASS Rcpp RcppGSL RcppParallel rlang systemfit tibble tidyr]; }; disk_frame = derive2 { name="disk.frame"; version="0.7.2"; sha256="016sxjvbw8j6inwr1y66hck1dzpnjr79v2fiiylcpgdnc39hc0hn"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; @@ -8349,7 +8365,7 @@ in with self; { disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dispositionEffect = derive2 { name="dispositionEffect"; version="1.0.0"; sha256="0vx87xylpx3np6afwwylzwp0nb9g8r04ngn8mgr88ycys815fkqw"; depends=[dplyr lubridate magrittr progress purrr rlang]; }; disprofas = derive2 { name="disprofas"; version="0.1.3"; sha256="16gbd9algrs6pqid8k96p9r9pzfy337jv506alnajvwirs59sldd"; depends=[boot ggplot2]; }; - disprose = derive2 { name="disprose"; version="0.1.5"; sha256="0drnqpgmisavy9rqk3p0f1safw4fshpjn9lq3vjay4k5s8dg37h7"; depends=[]; }; + disprose = derive2 { name="disprose"; version="0.1.6"; sha256="0jmn8xjwfr3dhrsmx3lq8kz7lq9pnk95mgr97gi72c86c7rap935"; depends=[]; }; dissCqN = derive2 { name="dissCqN"; version="0.1.0"; sha256="142f4ggzwdhf2vm9kisayna9a5j17mmy2jckhjrvxh4k5dc3ssf6"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; @@ -8367,7 +8383,7 @@ in with self; { disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; distr = derive2 { name="distr"; version="2.8.0"; sha256="1dyff4m33xmw6hxb3jxzr8vvajg3qz3rfcrfxjxwsswlddfz0zdv"; depends=[MASS sfsmisc startupmsg]; }; - distr6 = derive2 { name="distr6"; version="1.6.7"; sha256="0drk81lhmfx199pb5vq5chbxcm8774iqyzw605pj6n2jcz09zhq2"; depends=[checkmate data_table param6 R6 Rcpp set6]; }; + distr6 = derive2 { name="distr6"; version="1.6.9"; sha256="1vl8xg0r0g169xdx6prnfpfr1jnn8mc4daayrzpws4my2dc59dqh"; depends=[checkmate data_table ooplah param6 R6 Rcpp set6]; }; distrDoc = derive2 { name="distrDoc"; version="2.8.0"; sha256="1iq2gbfbsf3h279yh3fnqsi39gdw15vc6r1g33xcb8kgmmqmvf0p"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; distrEllipse = derive2 { name="distrEllipse"; version="2.8.0"; sha256="1ymfa8xpgs8zjp4psiwmll5z0vji496fivxmcavspzxy31cw70wx"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; distrEx = derive2 { name="distrEx"; version="2.8.0"; sha256="1gwhsnlrnzyp2x97d9wfdy5pa9z3q5il934wjv4kxs9wsvkwsr5h"; depends=[distr startupmsg]; }; @@ -8382,7 +8398,7 @@ in with self; { distributions3 = derive2 { name="distributions3"; version="0.1.2"; sha256="098da9lyimwrnyxqqnssm87lg8c7nbmcbwbjpwdwvvyq2xjzc0my"; depends=[ellipsis ggplot2 glue]; }; distributionsrd = derive2 { name="distributionsrd"; version="0.0.6"; sha256="0ykzxcxh5l9l5z3546iqlllryw2xyixz1hiynx19k8bsn8k7dxyp"; depends=[flexmix modeltools Rdpack]; }; distro = derive2 { name="distro"; version="0.1.0"; sha256="03b8mkjhxxh93675mmj443a83mgfwhkdar7dfbf3agf6aqnadn2g"; depends=[]; }; - distrom = derive2 { name="distrom"; version="1.0"; sha256="0wylw7yaylf5j8cy8g45jrw91mwx6w0i7vf9ysnj5kxyznq1gl6y"; depends=[gamlr Matrix]; }; + distrom = derive2 { name="distrom"; version="1.0.1"; sha256="1j8k8cgh5r8av8jf8miq858j66hmkkcdjqhia77iivx97fg9pcjk"; depends=[gamlr Matrix]; }; distrr = derive2 { name="distrr"; version="0.0.6"; sha256="04lhrc92y6dqnfpqlmynjvn2dndzkknnvwsr5pf73dfpgv7n3s1f"; depends=[dplyr magrittr rlang tidyr]; }; disttools = derive2 { name="disttools"; version="0.1.8"; sha256="1jm3nqyywdzpbfvk2mffmhp75al1hcvd5l4r21fbd3iz2anll0ma"; depends=[]; }; dittodb = derive2 { name="dittodb"; version="0.1.3"; sha256="0wkiy3vgqrpmc34hxw30rfgg01d941gxz8fr2h9i9gvddnxnywdc"; depends=[DBI digest glue lifecycle testthat]; }; @@ -8407,15 +8423,15 @@ in with self; { dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.5.4"; sha256="0qsw9vbzjnfbi9lipph2xyfvldrwjg3mhxxsikmm2kk1m6fmf59x"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; + dlookr = derive2 { name="dlookr"; version="0.5.5"; sha256="0p7capcj3q6am54bhxbvb3fxv9iwgyjkx8r7zy1bpb5wpbkbq8ak"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; dlstats = derive2 { name="dlstats"; version="0.1.4"; sha256="1j415v3kajn269md046b05pwklqwm4rwk2f7q3mwax9yx4m5nc0n"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; dm = derive2 { name="dm"; version="0.2.7"; sha256="1fh34vgpr8w1kr7w667mzalg014lm1h82jr3gl1w0s5x93w3qi06"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; - dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; dmbc = derive2 { name="dmbc"; version="1.0.0"; sha256="0hfcc12v73c0x11jvp0pm2ddm2qd1fdv8667k67r7d1zi0cp2i5g"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools pcaPP Rcpp RcppArmadillo RcppProgress robustbase]; }; + dmdScheme = derive2 { name="dmdScheme"; version="1.3.1"; sha256="1h7gbgjpwrlz2lhicikkzl9xya5iz4dg019snnkb403nmy8p00kf"; depends=[digest EML knitr magrittr rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmlalg = derive2 { name="dmlalg"; version="1.0.2"; sha256="1ixjpalg3q0wnddrli6v66kky3pxf90sjgiia8jhk4nds0h58a72"; depends=[glmnet lme4 matrixcalc randomForest]; }; dmm = derive2 { name="dmm"; version="2.1-7"; sha256="0zn7d2lr2vig8q6h5dd5zk7ra1f0mkm6pszl3v06aghcflg63ng3"; depends=[MASS Matrix nadiv pls robustbase]; }; @@ -8430,13 +8446,13 @@ in with self; { dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; doBy = derive2 { name="doBy"; version="4.6.12"; sha256="1m60ya4cdickqsj0dc90bv4n47df6qg6n82fikxrkl4yhg7yyn1i"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; - doFuture = derive2 { name="doFuture"; version="0.12.0"; sha256="1hqzdlgcrc5l6xjwdylsc9iiysi2wx8k1j1vmw3wryj26057c9y4"; depends=[foreach future globals iterators]; }; + doFuture = derive2 { name="doFuture"; version="0.12.1"; sha256="0fhk32ih9cbwxw3mvkddqjv0dsaw9xk8qjdslfcabvmixhnh3s6m"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMIsaul = derive2 { name="doMIsaul"; version="1.0.1"; sha256="17a363gj8hsdpga6b07c4lzrswgf553dfqxacv2jfx0rswxnrsb0"; depends=[aricode arules clusterCrit dplyr ggplot2 Gmedian MASS mice NbClust ncvreg plyr scales survival withr]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.17"; sha256="1mxbg2qqda1775vb4s26gz27p5n91lljgjmlqxq4sras22njasmr"; depends=[foreach iterators]; }; doRNG = derive2 { name="doRNG"; version="1.8.2"; sha256="1jff27zzrvd1fd61x2m9468h8xn3s1c9f6wibviy5zdhj5dx9s9k"; depends=[foreach iterators rngtools]; }; - doRedis = derive2 { name="doRedis"; version="3.0.0"; sha256="05xvan8djif0mkvk32lg20ffrb6x013a5ia1wc1k0g5n4jkg6rs4"; depends=[foreach iterators redux]; }; + doRedis = derive2 { name="doRedis"; version="3.0.1"; sha256="1i04kpf24aafs2c7qd74ms2q6093in1x75vlpiw3pwprl6cwkb11"; depends=[foreach iterators redux]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.20"; sha256="1f5v0k2w0b2478p6iqa3hn2lwd1x3rzc348n57nd38ka2vnsnz4i"; depends=[foreach iterators snow]; }; dobin = derive2 { name="dobin"; version="1.0.2"; sha256="1vhvwdl7a8bf4q64jz8a6afm3smdn3jgxvs17jjlilarpdazl3p5"; depends=[pracma RANN]; }; dobson = derive2 { name="dobson"; version="0.4"; sha256="0xfn7s3wzrv1md40bdjrnjfiqyxg5c6lrcpnvayjdgrhxq161hhq"; depends=[]; }; @@ -8452,11 +8468,11 @@ in with self; { docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; - document = derive2 { name="document"; version="3.3.2"; sha256="1abkgady7viqmip5080hwrl0jv1279xzj7qak0jvs0zhqq2zkn0z"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; + document = derive2 { name="document"; version="3.3.3"; sha256="1gbfmy4nvnxrfazpi17v33afhpvgkmk54p74dpf4jvl2ria0byn7"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; documenter = derive2 { name="documenter"; version="0.1.1"; sha256="0y6zrvmb9bhc1ni4v89h9pq5ara8p2v4b35ylasia5s9x1y93mcp"; depends=[htmltools magrittr officer xml2 yaml]; }; docxtools = derive2 { name="docxtools"; version="0.2.2"; sha256="0ds8qy21x7cq9qmnn6gggzf8kxdphq7nf2mx5gqx829zgkripsfq"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; - dodgr = derive2 { name="dodgr"; version="0.2.12"; sha256="14xi3zl8ndz7ij7617cz97s2q6v7dc78vbxd1bwyfq58zn71picn"; depends=[callr digest magrittr osmdata Rcpp RcppParallel RcppThread]; }; + dodgr = derive2 { name="dodgr"; version="0.2.13"; sha256="135f76jlj18lm6fpn1k4vjc1vh8v41ww43rrbqjbm1k4gfgqqah5"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; }; @@ -8486,7 +8502,7 @@ in with self; { downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dowser = derive2 { name="dowser"; version="0.1.0"; sha256="1k85m4xm1kkkzk19kxim83i3pbl22mz2lql4cw0ml7wmx0m1pva9"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; - dparser = derive2 { name="dparser"; version="1.3.1-4"; sha256="1rjbli5ii5l6cpj3ah6r7cyqzdw0fm2qmr4kkw8cv02zryw0y8za"; depends=[digest]; }; + dparser = derive2 { name="dparser"; version="1.3.1-5"; sha256="0xb2mjgmhn91jyragxscq6p41wa59119w5m138q523zi1ca8q1jc"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; dpcid = derive2 { name="dpcid"; version="1.0"; sha256="1gx8gyrxvm07mjiasl0b80y0x3crq6gy170v6s817d11jw44n86z"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.7.2"; sha256="1g57azixwv3c6x60l1kqdnzylf0ayv3s15wi0av2qcca35z3baa1"; depends=[digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; @@ -8530,20 +8546,18 @@ in with self; { drord = derive2 { name="drord"; version="1.0.1"; sha256="0xi85s6y78d54qv3cw7q72dz5kcs8cc8nyjyaxr5h6pfpzi2l8i9"; depends=[ggplot2 MASS ordinal VGAM]; }; drought = derive2 { name="drought"; version="1.1"; sha256="1i064bg7b29agnj2cq5gl61z12xx1a3lkzfg31sly3alzpvciwr9"; depends=[copula corrplot]; }; drpop = derive2 { name="drpop"; version="0.0.3"; sha256="1gh0w1a59070g9mmck4fp9591vfw23c5nlj3jrkxwarp4vfy1dqp"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; - drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; }; drugprepr = derive2 { name="drugprepr"; version="0.0.4"; sha256="07401dqw4krqh3rv7y13526n0xjdlaw14gcxwranksjchmqjd3ij"; depends=[DescTools doseminer dplyr purrr rlang sqldf stringr tidyr]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; - ds4psy = derive2 { name="ds4psy"; version="0.7.0"; sha256="1dyylnx2lsdvsv9cydjp4qm1dgn4lv44afr2hplqyi45jmmzy8mm"; depends=[ggplot2 unikn]; }; + ds4psy = derive2 { name="ds4psy"; version="0.8.0"; sha256="1yrg25jhqvkar7bvp9qs2rvkn64p3lnz5w2s4gnn543hbj329ba2"; depends=[ggplot2 unikn]; }; dsa = derive2 { name="dsa"; version="1.0.12"; sha256="16lqqm0lcgpkzkj7d0akamzap85aj4dyj5rs5fkb5b9bjqa5r4c5"; depends=[dygraphs forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava seastests timeDate tsoutliers xts zoo]; }; dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; }; - dsb = derive2 { name="dsb"; version="0.3.0"; sha256="0b7da10i45vxik2mbxb9bjwkhw62nafh09j8qixx4nc1j5a7dp3f"; depends=[limma magrittr mclust]; }; + dsb = derive2 { name="dsb"; version="1.0.1"; sha256="1nc4xbc5asz9h7n3x2svd8552bnqz52c972gmy586xyw1vv5c059"; depends=[limma magrittr mclust]; }; dscore = derive2 { name="dscore"; version="1.4.0"; sha256="0vjrxdgss79pmd8vkarvgqqm465byz17r7r93k5i3923xm02kavr"; depends=[dplyr Rcpp RcppArmadillo stringr tidyr tidyselect]; }; dse = derive2 { name="dse"; version="2020.2-1"; sha256="170rxrniszs8h59ah4mn4mz8d7kzix4g3vlz4icd8w6bl40c6ykc"; depends=[setRNG tfplot tframe]; }; - dsims = derive2 { name="dsims"; version="0.2.0"; sha256="1yj6rk6wvxhwzfrbvy5ljsp94pfxrf9vwaccr9gbffg0b3c1badb"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; }; dslabs = derive2 { name="dslabs"; version="0.7.4"; sha256="05v51rckpfjz2cbms250sv0q34l0ip841w9ardvs51s2x7r8qypc"; depends=[ggplot2]; }; dslice = derive2 { name="dslice"; version="1.2.0"; sha256="1k9hxpmr563p8bpd9m991lx5ig366mzk9j1lzldci9pq4jiayin1"; depends=[ggplot2 Rcpp scales]; }; - dsm = derive2 { name="dsm"; version="2.3.1"; sha256="0flmbypplk99n3b3lkai2lz162w4bnizw2bpdk91db53w2jfp3i9"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; + dsm = derive2 { name="dsm"; version="2.3.2"; sha256="1db4z7mchf5zfwz7rhimx727sqzj8yimh7wsw9f4qzyla776ll9i"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; }; dsmisc = derive2 { name="dsmisc"; version="0.3.3"; sha256="19760hcb5154rayhj72r48r7glh2qyaf178zkxplywmsw338kws4"; depends=[Rcpp stringr]; }; dsos = derive2 { name="dsos"; version="0.1.0"; sha256="00m31l38q6i2m5p9k2x0d6n0b8hyvpgv6b5n8s8069zannqx8fgz"; depends=[data_table ggplot2 isotree ranger scales simctest WeightedROC]; }; dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; }; @@ -8551,24 +8565,24 @@ in with self; { dst = derive2 { name="dst"; version="1.5.1"; sha256="08cw09hf5jx1qfmrqmhm4713gzq21p0ss3nx7qrs92mpsvprq3yc"; depends=[]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; - dtgiw = derive2 { name="dtgiw"; version="0.1.0"; sha256="0iamvnf8s19wxs1wddzag4sgg6dhcplgj4gz8z2zalskpx02ss11"; depends=[]; }; + dtgiw = derive2 { name="dtgiw"; version="1.0.0"; sha256="1902rhfrnmp3550c6sqfrzs7xrrjpym0zpqhfnlffdnn42cp910r"; depends=[]; }; dti = derive2 { name="dti"; version="1.5.1"; sha256="08da7v7sl88g2jixfplvw9rc5rvlifq3fvyrgh9naa5jsmd8h5ia"; depends=[adimpro aws awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; dtp = derive2 { name="dtp"; version="0.1.0"; sha256="0qy8nrbq22bfbajkxq6blkq7583pc5mb392gmqb3c9daxmqn42vb"; depends=[Formula gtools plyr]; }; dtpcrm = derive2 { name="dtpcrm"; version="0.1.1"; sha256="0k25fm0z3snpx1v2kwd50svgnkjhn5c0hy1gnlw2lif6rjz1fzd9"; depends=[dfcrm diagram]; }; dtplyr = derive2 { name="dtplyr"; version="1.2.1"; sha256="1wyhhn16mvdj55k2xsh7vy489l7xk4mkz7pjrw16z87awk6yjh16"; depends=[crayon data_table dplyr ellipsis glue lifecycle rlang tibble tidyselect vctrs]; }; - dtrSurv = derive2 { name="dtrSurv"; version="1.2"; sha256="104hz8nqn02rk2wg15j4qap7r7cq4162agjaflv2dxmyb9zj0cb2"; depends=[survival]; }; + dtrSurv = derive2 { name="dtrSurv"; version="1.3"; sha256="08d90a8ladwnn7g0chsghwh20p3r285bqsyn3nrdacf83y7lr9k1"; depends=[survival]; }; dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dttr2 = derive2 { name="dttr2"; version="0.4.0"; sha256="1a7fmby2bassj3wnx2wk3c4fzzx63saw3963kfs6pq58cbwpqk09"; depends=[chk hms lifecycle]; }; dtts = derive2 { name="dtts"; version="0.1.0"; sha256="0jha4fpx7fi9xrw0677i07ip7ydrvyq8g2lfy8g80jkfy6d6pbdd"; depends=[bit64 data_table nanotime Rcpp RcppCCTZ RcppDate]; }; dtw = derive2 { name="dtw"; version="1.22-3"; sha256="004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.7"; sha256="16crcvwj1s45gkg1gl6blll64wf4676qmzrx0kv55sylq0rjlxhf"; depends=[caret data_table dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="5.5.8"; sha256="11kyppfhcw6p9dw8mp1rxj1ba293v0dlcw8r32zz9ji2lmnixv6n"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; + dtwclust = derive2 { name="dtwclust"; version="5.5.9"; sha256="0nd3m1y89pq7chrdzcnf86kiwzb27c8lxg5gy2v50249k6zsbapf"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.3"; sha256="1alxh9mj610m7wgr6a97mpzy5ia9vzckhz6wmxyix7xh9mzbn1gw"; depends=[]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.3.2-1"; sha256="1z0zpw4aqr21lwsdb9c8rj8nmnd2xh7cbwqiv3mlmrl0xn6jgjxs"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.3.2-2"; sha256="0scsv5gyz71kdrwdjqjrfrrisn1ai3bm4dr514driw5mmjmq8dac"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; @@ -8589,11 +8603,12 @@ in with self; { dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; + dyn_log = derive2 { name="dyn.log"; version="0.4.0"; sha256="0vlzv6zy29qhygm77kww65wpnp77a93ja13vr4p2yyychrjspqx3"; depends=[crayon glue R6 rlang stringr yaml]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.6"; sha256="04026jz4vdyj2a2kry5kk5k84cy4vqqrcn328hxwnwh7r8i7klvn"; depends=[tcltk2]; }; dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; }; dynRB = derive2 { name="dynRB"; version="0.16"; sha256="07hbfnzyzsg290l6w953v5yh2dbmqr9jb20gnxf8zn7dcggkl6sq"; depends=[corrplot dplyr foreign ggplot2 RColorBrewer reshape2 vegan]; }; dynaSpec = derive2 { name="dynaSpec"; version="1.0.1"; sha256="0wzfy50602wlsh4sbfjadsr01f3az2lvk5c4px3qmcvv5gybd6w0"; depends=[ari av gganimate ggplot2 magrittr NatureSounds pbapply png scales seewave tuneR viridis]; }; - dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; + dynaTree = derive2 { name="dynaTree"; version="1.2-12"; sha256="1cpx73fknlsfph2g9dlqhh76jk7mlxn9dj2i5fwv1l59sx608lzb"; depends=[]; }; dynamAedes = derive2 { name="dynamAedes"; version="2.0.2"; sha256="0pxj09pz9l2p5g5r31a6jgw283xj12jh3j0x2s63lczj236agl97"; depends=[doParallel drc fields foreach insol raster slam sp]; }; dynamac = derive2 { name="dynamac"; version="0.1.11"; sha256="0dzw4h128z53vwdpkikhxqil0xjrcjrp1zmz0fy2qhq0n74sdyar"; depends=[lmtest MASS]; }; dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; @@ -8652,7 +8667,7 @@ in with self; { easyPSID = derive2 { name="easyPSID"; version="0.1.2"; sha256="0npih5xpf2a5xw2iz68z9ckm8d4cpradzzdn50rdpg4gqvaq7azp"; depends=[foreign LaF stringr]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.13"; sha256="1wd8idyqz7kgygp34mjp2abx82775ry8l07vsqdlqnc6fdnvg55d"; depends=[]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; - easySdcTable = derive2 { name="easySdcTable"; version="1.0.1"; sha256="0xhv812qwwfkv1g3fbz4kl6jxq2dwkgqr7w6ildhm7zlpqk40qaa"; depends=[Matrix sdcTable shiny SSBtools]; }; + easySdcTable = derive2 { name="easySdcTable"; version="1.0.3"; sha256="05r8g9d7qp4naarpr1ipxk8vx4czg9yz3qkghj8abvkmwww838wn"; depends=[Matrix sdcTable shiny SSBtools]; }; easyVerification = derive2 { name="easyVerification"; version="0.4.4"; sha256="08mih1arx01vj7cs1jsln644pcvslpyw1rgr6jmv2czr6xd8qb7d"; depends=[pbapply Rcpp SpecsVerification]; }; easyalluvial = derive2 { name="easyalluvial"; version="0.3.0"; sha256="02l0jy3bwp3qrz6g5iknl2fsfqi6a6wzn8q18k8518xczlsn1gbd"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; @@ -8676,20 +8691,20 @@ in with self; { ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; }; ebci = derive2 { name="ebci"; version="1.0.0"; sha256="00fa2y4ha9nlbjd01qckrrn721s63ja61n5jr4wm7ac6y7xivb2i"; depends=[]; }; ebdbNet = derive2 { name="ebdbNet"; version="1.2.6"; sha256="1qzwpr76nwvgylqdg7vhrbvh2lb1zrxx3g120yz156hhs4awv4kz"; depends=[igraph]; }; - ebirdst = derive2 { name="ebirdst"; version="0.3.3"; sha256="05k388rsqjgia9jgnlq799l22zg10kvxs7l4b51kknrpqd5pis8d"; depends=[DBI dplyr fasterize gbm ggplot2 gridExtra jsonlite magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang RSQLite sf stringr tidyr viridisLite xml2]; }; + ebirdst = derive2 { name="ebirdst"; version="0.3.5"; sha256="0ykc2iqswjihw5hnghjnmgn13ssm5mv772vvzksjxy3sbvjvm9dp"; depends=[DBI dplyr fasterize gbm ggplot2 gridExtra jsonlite magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang RSQLite sf stringr tidyr viridisLite xml2]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; }; ebnm = derive2 { name="ebnm"; version="1.0-9"; sha256="0izzfylcmq6zajngjyw85kbr8jys49qcgsadqkj85v2k1hg2jw7q"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; - ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; }; ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; }; ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; }; ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; ecespa = derive2 { name="ecespa"; version="1.1-14"; sha256="07pldcwm1pi117rjl3y05x6kxl5lxs4y5aiwq0jd02mx43zy296c"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; + ech = derive2 { name="ech"; version="0.1.2.0"; sha256="0xkgbqs6wmfp6a7dih4n850dw6ky596hlpmfrv72lnp77w03pll9"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.3"; sha256="1hjjqbc6dvz6bi6lsqlvlkrmzqv1g205cd0f8k0a7lq37hcqsw7s"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; - echarty = derive2 { name="echarty"; version="1.4.3"; sha256="047vqwspl7x94xlj2726hyma9f61406vq7vm7hk3j94r2zk64vs1"; depends=[dplyr htmltools htmlwidgets jsonlite shiny]; }; + echarty = derive2 { name="echarty"; version="1.4.5"; sha256="1c6m6di8g5zcv49wivkrr6qxqnikjf0xh06s8r35az00bl95ynqn"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; echo_find = derive2 { name="echo.find"; version="4.0.1"; sha256="1nadqqpxgx2ck16nzjp5ajm6714452qzllg5cq1jpisv1yb31db2"; depends=[boot minpack_lm]; }; echogram = derive2 { name="echogram"; version="0.1.2"; sha256="0kir7x32fk3fc63kr3b2j0hfkmivs2pwrlxyjvdg7xqc59hjp3ma"; depends=[geosphere readHAC]; }; @@ -8722,7 +8737,7 @@ in with self; { ecotraj = derive2 { name="ecotraj"; version="0.0.1"; sha256="0570j338107bxx004wwx76j1x981nh1apgp9x33r4ddz4f589aag"; depends=[circular Kendall MASS Rcpp]; }; ecoval = derive2 { name="ecoval"; version="1.2.9"; sha256="05a6hyjsbdp4wwhrm5fwjr7fxx4g2nffhp885q0da2jkzd0754f1"; depends=[fs jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.3"; sha256="0n602jssl6rf596nwm6hbl7s9vdlqi20w8mrhxicj373mw5v22m8"; depends=[Rcpp]; }; - ecpc = derive2 { name="ecpc"; version="2.0"; sha256="0xw9yd2xsxkia68zvm2pkqm73y3k9gzhnkslwikq39ra1l404r28"; depends=[CVXR gglasso glmnet Matrix multiridge mvtnorm pROC survival]; }; + ecpc = derive2 { name="ecpc"; version="3.0"; sha256="0v2ib2jknzl1qzh852kzpyy9v0synbhhfhm3p4s8d63p05bnzcqs"; depends=[CVXR gglasso glmnet JOPS Matrix mgcv multiridge mvtnorm pracma pROC quadprog survival]; }; ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; }; ectotemp = derive2 { name="ectotemp"; version="0.2.0"; sha256="172rij0mmk7dd10lpbsxm4yy7072nz1fh7jfiyqmagzs5hwa31jv"; depends=[dplyr psych]; }; ed50 = derive2 { name="ed50"; version="0.1.1"; sha256="058p1750ba5hp4rczi26grgwjia2ny1880v1vfp6wxad13r459pq"; depends=[boot]; }; @@ -8734,7 +8749,6 @@ in with self; { edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; eddi = derive2 { name="eddi"; version="0.0.1"; sha256="19cgrqdcji509igb6rmlwb75xyyvrh34nv6zyjjfcsc31p5nvf95"; depends=[raster rgdal]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; - edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; edeaR = derive2 { name="edeaR"; version="0.8.6"; sha256="13hzb7m2rb6crxsia3d5szyz59kyd3506j8avbr51a7cps1bqaj0"; depends=[bupaR data_table dplyr forcats ggplot2 ggthemes glue hms lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; edecob = derive2 { name="edecob"; version="1.0.0"; sha256="1zkrh33wzivfaxqn35x3ciwmm9g98x4wgkzmaflzb12p6c0d4f8w"; depends=[ggplot2 rlang]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; @@ -8805,26 +8819,26 @@ in with self; { eirm = derive2 { name="eirm"; version="0.5"; sha256="0zs45n6xkyi9agrgv36bz2prdcplln66713xjr6sxyip52z9ksbk"; depends=[blme ggeffects ggplot2 lme4 magrittr optimx readxl reshape2 shiny shinycssloaders shinydashboard]; }; eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; - eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; }; - eks = derive2 { name="eks"; version="1.0.0"; sha256="1r9f5j2drsc8ladhbhsls29wqsmm4wprfmapas0ba3h2anw75scd"; depends=[dplyr FNN ggplot2 isoband ks mapsf sf]; }; + eks = derive2 { name="eks"; version="1.0.1"; sha256="0vl5q4n3jk4zx8wgq5cx6x3yrr8ivbm0ha2z0rsicf7c6ky9pmvj"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; elasdics = derive2 { name="elasdics"; version="0.1.5"; sha256="1q6l32v3y5l1n9g4si6swc3ck1nndn4xsj0hw1q9b4x5dlxvfziv"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.3"; sha256="0nxcw06d0cp2mbqzg2fm9yys5xm6xx7bfcfvr0avcs8afkvz29j8"; depends=[lars]; }; + elbird = derive2 { name="elbird"; version="0.1.3"; sha256="1gf5kf9kq5g70y6is8xsgp8ch63rx58fsdmp3bhs10mgq6fggalp"; depends=[cpp11 dplyr matchr purrr R6 tibble vroom]; }; elec = derive2 { name="elec"; version="0.1.2.1"; sha256="1gk75y83n6hvv36fp1n6kncln35j6f3ahasnzhc4fp71aq6q6vjf"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; elect = derive2 { name="elect"; version="1.2"; sha256="1hjqhmdklspssa75x8xdhv2narqgw80qh259hyfwfgnvva97w2ja"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; electionsBR = derive2 { name="electionsBR"; version="0.3.2"; sha256="05wxzfgh0f3n6w8ah32q2v4f67g6w4qri4dv1linmlax77clv9fn"; depends=[data_table dplyr haven magrittr readr]; }; electivity = derive2 { name="electivity"; version="1.0.2"; sha256="0clxsn9zkpdlq9jgq029ag310ji0hd0l23wfyqh8gkkj0091ip5a"; depends=[]; }; - electoral = derive2 { name="electoral"; version="0.1.2"; sha256="1kf5ix0bmrh7zwgg87zf10s8pvq32fpqlmyw2dq1kf9gv3s91p04"; depends=[dplyr ineq tibble]; }; + electoral = derive2 { name="electoral"; version="0.1.3"; sha256="0r15ghnblp5f2g9hpw187clfpj1cgplqyn9mhyvlcmz5ql60glsj"; depends=[dplyr ineq tibble]; }; elementR = derive2 { name="elementR"; version="1.3.7"; sha256="01xbqargzc0bp1l5rcvxikr95ghj9w7w5byhrjbgwbia6y7zhxa2"; depends=[abind colourpicker devtools EnvStats gdata gnumeric httpuv lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; elevatr = derive2 { name="elevatr"; version="0.4.2"; sha256="1a5j7hb9fsy9ybrdlywbm552kb2hj6ch1m8kvi2hybm99yw33n81"; depends=[furrr future httr jsonlite progressr purrr raster sf slippymath sp units]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; elfDistr = derive2 { name="elfDistr"; version="1.0.0"; sha256="11h91mwiw2pr0c8zvyzqql275falpiajv784n2rd5xs9azprqdd0"; depends=[Rcpp]; }; - elfgen = derive2 { name="elfgen"; version="2.2.3"; sha256="00rkhw4h7i1clnfmg6dhc8gz9wwmaaywnc9wrs28h0b8a8lls9nh"; depends=[ggplot2 quantreg RJSONIO scales sqldf stringr testit]; }; + elfgen = derive2 { name="elfgen"; version="2.2.8"; sha256="19c6xkikiv5nn5ryi8373j3vlkh25jigqky07528zx8nxxfdfdfi"; depends=[curl ggplot2 httr quantreg RJSONIO scales sqldf stringr testit]; }; elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elisr = derive2 { name="elisr"; version="0.1.1"; sha256="1kz07fyffaqgda9rqidxzxz0bxzhyb8pyxpzqsvjsn1i9w98cb5k"; depends=[]; }; elitism = derive2 { name="elitism"; version="1.0.4"; sha256="0n5g1nd1dd5wc76qa2va1lyxahg9p062l8wdqzq43ah6943pjzgr"; depends=[MASS]; }; @@ -8839,10 +8853,10 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; - emayili = derive2 { name="emayili"; version="0.7.5"; sha256="1kkcnj7knfiq1pr0yq2sfldvrxjw5j9xg62crsiiwsj0ilnzw6bk"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; + emayili = derive2 { name="emayili"; version="0.7.9"; sha256="15a4paw77cn6fx92kxy1k33ahzb338yrppvxpi5idd6bbcwqccja"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; embed = derive2 { name="embed"; version="0.1.5"; sha256="029ysbfvgb1sb14xs0p6dswcxbpgnhvshhs2hcqbrizysb7c7bj2"; depends=[dplyr generics keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; - embryogrowth = derive2 { name="embryogrowth"; version="8.3-4"; sha256="0f2ks472c9nr4k9vr2ig1jr2syklm8yahhlchs8b6af10dz7sf0n"; depends=[deSolve HelpersMG numDeriv optimx]; }; + embryogrowth = derive2 { name="embryogrowth"; version="8.4"; sha256="0miaw479fv1vrypj9hhr72l45wmd5dh00rm3ay61a8w3viph76kq"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="2.1.1"; sha256="1imw4zlx338yfp4kb6ax4z1ni5f6q5mlcvfx7xm05j0nqigjphv9"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; emdist = derive2 { name="emdist"; version="0.3-2"; sha256="05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh"; depends=[]; }; @@ -8850,7 +8864,7 @@ in with self; { emhawkes = derive2 { name="emhawkes"; version="0.9.5"; sha256="0b6kjwx2lsz5rj8819n71nvvchjpys90ns5n6gcgfwn5afzfdvql"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; - emmeans = derive2 { name="emmeans"; version="1.7.2"; sha256="1g112yvqvxi83x128hwz4qpifwihlm0y5szg82cdsx3c9cm1rrfk"; depends=[estimability mvtnorm numDeriv xtable]; }; + emmeans = derive2 { name="emmeans"; version="1.7.3"; sha256="0kbbin3zfxqkm5awq4331fv7y2kfpdhkwrqh91prl7qpf8kscin6"; depends=[estimability mvtnorm numDeriv xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; emoji = derive2 { name="emoji"; version="0.2.0"; sha256="06bsz0hsaqa2lzqpyqhsfp07p8ri5frvhiza0s8aali7w3cr2szh"; depends=[glue stringr tibble]; }; emojifont = derive2 { name="emojifont"; version="0.5.5"; sha256="1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i"; depends=[ggplot2 proto showtext sysfonts]; }; @@ -8861,6 +8875,7 @@ in with self; { emplik = derive2 { name="emplik"; version="1.1-1"; sha256="1kw8g8j075bsicdvgkjf4870rfv5c30gvmw6qkkaz3ki22x74w77"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.32"; sha256="0d4fzyxa7kynxgx8187vqxnb25kv1m1pkawxdpng6nfaiy76w67m"; depends=[]; }; ems = derive2 { name="ems"; version="1.3.11"; sha256="0xg4c6yhrnq5pfz94i1ys1bdqfz12h0wcs86fz4nm4pqfdbh41cc"; depends=[boot rms survival]; }; + emstreeR = derive2 { name="emstreeR"; version="3.0.0"; sha256="1rfgw9inkxg81ky31r51a8fc5nvwalrjp2nkx4p24l5k622fwmjb"; depends=[BBmisc ggplot2 mlpack scatterplot3d]; }; emuR = derive2 { name="emuR"; version="2.3.0"; sha256="1i133lnjn5yjy26r25xfhny6410lp8jj23jpn54znbyc560w2c9r"; depends=[base64enc cli DBI dplyr httpuv httr jsonlite mime purrr readr rlang RSQLite rstudioapi shiny stringr tibble tidyr uuid V8 wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-21"; sha256="0iikf6yinkqcgdnxx6v5kzfllhq3ppl75ym48vlcbnvkwv0v4l4v"; depends=[mvtnorm]; }; enRich = derive2 { name="enRich"; version="3.1"; sha256="0xl9rhz6mflzp1g5d51xz74dsm8qp16jbkflhzrha3vfirn2jh8q"; depends=[]; }; @@ -8890,13 +8905,12 @@ in with self; { ensr = derive2 { name="ensr"; version="0.1.0"; sha256="18b81iswvby7k5akbfdyc6a8j1621d4d35hxmgjip5kyvf5cb3p8"; depends=[data_table ggplot2 glmnet]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entcn = derive2 { name="entcn"; version="1.0.0"; sha256="0zwhhjrc24d3hr9494p9ayxlkd0g6jml9raxwv59mpvpprrasdws"; depends=[RYoudaoTranslate stringr]; }; - entropart = derive2 { name="entropart"; version="1.6-9"; sha256="0xwsascm9m2fxbnb0msv20kbg8xjrn17fggsl7ws8pdq8xg912c8"; depends=[ape EntropyEstimation ggplot2 ggpubr reshape2 tibble vegan]; }; + entropart = derive2 { name="entropart"; version="1.6-10"; sha256="1wh51ilvgnrzjkljph2f1mwik4m82fn6ryc2jhpbnx12j0h2m3hz"; depends=[ape EntropyEstimation ggplot2 ggpubr reshape2 rlang tibble vegan]; }; entropy = derive2 { name="entropy"; version="1.3.1"; sha256="1f0j8jsn6pzf4gi5g0akixx6x5vc69ci5f4m2vnwp40frvsqjnkg"; depends=[]; }; entrymodels = derive2 { name="entrymodels"; version="0.2.1"; sha256="0fz7jzax12pzw47iry4amgg9z4z3z94kig6r5dhcqa84kq02294v"; depends=[dplyr magrittr readr]; }; envDocument = derive2 { name="envDocument"; version="2.4.1"; sha256="074m7adnasvys28kjdgj9071fi90vsl4yv5zvpxik4crlx098dlw"; depends=[]; }; envalysis = derive2 { name="envalysis"; version="0.5.1"; sha256="1lvzb8jdbvrigw5va39fsfnkvwrgb9wvarrdllipszqxmnc8g5rk"; depends=[drc ggplot2 lmtest]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.8.0"; sha256="00akdhqs7jabk7g33rwmxs92jcr39shy9s456nqxk6x4244d2vb3"; depends=[fitdistrplus investr sn]; }; - envi = derive2 { name="envi"; version="0.1.11"; sha256="0l5pc5qqgprqkyjv8bmk5yay25bbnrsx3kx6lzcdnhwkvr4izrs8"; depends=[concaveman cvAUC doFuture doRNG fields foreach future iterators pls raster rgeos ROCR sp sparr spatstat_geom spatstat_random]; }; + envi = derive2 { name="envi"; version="0.1.13"; sha256="0gs6dda7d53vbhjxij27r1nmgq2bc6p9xddryc7sajcajskmz5nb"; depends=[concaveman cvAUC doFuture doRNG fields foreach future iterators pls raster rgeos ROCR sp sparr spatstat_geom]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.6.6"; sha256="01y3qqh99aclarglpdg8mb9iikzkm1w62mv93m22lm8ami25a372"; depends=[animation BiocParallel data_table mixtools RColorBrewer Rdisop]; }; enviPat = derive2 { name="enviPat"; version="2.4"; sha256="1gvb7jmwwh4l44b50xmrq3bysr2iv6442yh9pdk6n81g3bgpz1d0"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; @@ -8916,7 +8930,7 @@ in with self; { epcc = derive2 { name="epcc"; version="1.4.7"; sha256="0j4cb17gvwsaacmhvm8qp5chr384kl7gj6089gjrc2hqi6kjr0rx"; depends=[cowplot deSolve formattable ggplot2 httr nls2 proto raster readxl rgdal rlang sp]; }; eph = derive2 { name="eph"; version="0.4.0"; sha256="0yznfhsp6sgymq02m4g477pnqlmmbdvwv32sidaa2giaf3nr4izj"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr questionr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.43"; sha256="0kicviwj3kvak1n58snmr9vz6ir8n624pzv5sdk9cc7kambydldi"; depends=[BiasedUrn lubridate pander sf survival zoo]; }; + epiR = derive2 { name="epiR"; version="2.0.46"; sha256="15gjykpvpajfrsccvj9f2sknhvfb6nahamab2zyhgpwb5kcggchw"; depends=[BiasedUrn flextable lubridate officer pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; @@ -8928,8 +8942,7 @@ in with self; { epikit = derive2 { name="epikit"; version="0.1.2"; sha256="0b9kc7qr7nkafmak60pyj7hln19w4zp33pk5y48qmfsxgarl6pv3"; depends=[binom dplyr forcats glue rlang scales tibble tidyr tidyselect]; }; epimdr = derive2 { name="epimdr"; version="0.6-5"; sha256="1nxdlz7gl9vrha9iw92y0s9dmm101gkz0rsqxqg1rdxanr6hs6sh"; depends=[deSolve polspline shiny]; }; epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; }; - epinetr = derive2 { name="epinetr"; version="0.95"; sha256="1hfsqwf8yf82m18qx4na9vsi653lxl16f6sd0smv9nckw1gdpqw5"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; - epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; }; + epinetr = derive2 { name="epinetr"; version="0.96"; sha256="0jg8pwbxlgrk7mqawsrifk724pi5qn0amh6x2fq54a0hmqdpdjns"; depends=[GA ggplot2 igraph Rcpp RcppAlgos reshape2 vcfR]; }; episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; }; episensr = derive2 { name="episensr"; version="1.1.0"; sha256="0670h2x8mcd4g7m17k0zascq5yb3llsvpp9qwzghiha0f9ai8xw0"; depends=[actuar boot dagitty ggdag ggplot2 magrittr trapezoid triangle]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; @@ -8949,7 +8962,7 @@ in with self; { epubr = derive2 { name="epubr"; version="0.6.3"; sha256="1cpsxx02qcj3brr3ddy8dbnaf6wxf42s9y3kx8fq5ki3pmlwry7g"; depends=[dplyr magrittr tibble tidyr xml2 xslt]; }; epwshiftr = derive2 { name="epwshiftr"; version="0.1.3"; sha256="11vfs2r2fzbdd3r0s8ikafgq9ins06ym73wqxyijz60h75py4ic7"; depends=[checkmate data_table eplusr fst future_apply jsonlite progressr psychrolib rappdirs RNetCDF units]; }; epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; - eq5d = derive2 { name="eq5d"; version="0.10.1"; sha256="00474dmjpifl7xrm2ln5znghyy7sm1r16dqfk49vafnd4wa89wm1"; depends=[]; }; + eq5d = derive2 { name="eq5d"; version="0.11.0"; sha256="1d6gj0a8vlm68jclnjy85j515rsdpfq32ddqm1ykl8qpbm4p7qvd"; depends=[]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; @@ -8983,7 +8996,7 @@ in with self; { errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.1.0"; sha256="0zq5h2wffn9d3f3blzh736478k91smlvz5hxy55hcjqffpxcp4ah"; depends=[searcher]; }; errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; - errorlocate = derive2 { name="errorlocate"; version="0.9.9"; sha256="1747vv9k276apahvirjmzxdc6zn3zw6zl9gym9aia7v36bm2q5g0"; depends=[lpSolveAPI validate]; }; + errorlocate = derive2 { name="errorlocate"; version="1.0.0"; sha256="1j2mln5vnibfjxgsj1zagswyf13kw0iabm4xj5qvynyhka9jw0jz"; depends=[lpSolveAPI validate]; }; errors = derive2 { name="errors"; version="0.3.6"; sha256="1404314glbqnicrwnfzmxxf7l97pgrb2gjkgkwn100p0sj83kjdg"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; es_dif = derive2 { name="es.dif"; version="1.0.2"; sha256="1swxg8mdp9jj9f0x0cawhhbx8gmmpsgqlbifx2v04a2vkgdkigqf"; depends=[]; }; @@ -9028,14 +9041,14 @@ in with self; { eudract = derive2 { name="eudract"; version="0.10.1"; sha256="0qznnfflmxgx6ic5lfw0vcv1jm6hs7g3srly90vj70adjcb49sbd"; depends=[dplyr httr magrittr tidyr xml2 xslt]; }; eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eulerr = derive2 { name="eulerr"; version="6.1.1"; sha256="0lldp2319qd08y87f862gx8a77rvikcnkmdl9xgx4glynfs3hk19"; depends=[GenSA polyclip polylabelr Rcpp RcppArmadillo]; }; - eurlex = derive2 { name="eurlex"; version="0.4.0"; sha256="0pzwpdhkf0mn2fy1b11sjmczjdngvjwb6gpm9wir23qfbhfhc4pj"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; + eurlex = derive2 { name="eurlex"; version="0.4.1"; sha256="05aqq7nk3s68bdjxyy6p9xjxz2acjl5lny7mf3d9y4lf9frp4b2i"; depends=[antiword curl dplyr httr magrittr pdftools readr rlang rvest stringr tidyr xml2]; }; eurocordexr = derive2 { name="eurocordexr"; version="0.2.2"; sha256="081p9qs09xif2cck0gmmqgzaly1r2p77kla2nhcvjgxgdylbsdkd"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; europepmc = derive2 { name="europepmc"; version="0.4.1"; sha256="16japbndid34shqg8n0bmjrxn84xmhrylvz832zclcllm6i93fn1"; depends=[dplyr httr jsonlite plyr progress purrr rlang tibble tidyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; eurostat = derive2 { name="eurostat"; version="3.7.10"; sha256="05132pid3gjp9qgksvz087vy323dp1s31w46q7a9553kxsqkgkw5"; depends=[broom classInt countrycode curl dplyr httr jsonlite lubridate rappdirs readr RefManageR regions stringi stringr tibble tidyr]; }; eva = derive2 { name="eva"; version="0.2.6"; sha256="1b5hrwgdbw19c63ywhkvxlz3843c0mgvsxlmab6zv6r2lrrdkf62"; depends=[EnvStats Matrix]; }; evabic = derive2 { name="evabic"; version="0.0.3"; sha256="0wd5wjsj9gbvbncaa97g1sp0211aq3nn5jc91lvhka6h34wxkcgc"; depends=[]; }; - evalITR = derive2 { name="evalITR"; version="0.2.2"; sha256="0xdf3jyrsnf2jb28fwf8ydlid1n74ka7mx98jp6fidzcinw4mzmj"; depends=[]; }; + evalITR = derive2 { name="evalITR"; version="0.3.0"; sha256="16xx6blq51hck04zxvya4iyv9d6i1zkrqyfg10vc0kc3626vnlrn"; depends=[dplyr MASS Matrix quadprog]; }; evaluate = derive2 { name="evaluate"; version="0.15"; sha256="0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8"; depends=[]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; @@ -9068,7 +9081,7 @@ in with self; { exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-34"; sha256="1i4mwz61mjlh1ai3dww2pjkicx9ww8c4mljnr8xlawh91479lva9"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.4-2"; sha256="08phqmpj7f6mjbwfnykqmfmg7g9h6ksj3hyryn79d7kwxyh994i7"; depends=[ssanv testthat]; }; - exactextractr = derive2 { name="exactextractr"; version="0.7.2"; sha256="0n39dqgsfzybi9yvnpnfdyypl8c9fml80jq0wxssik2n47mvbcif"; depends=[raster Rcpp sf]; }; + exactextractr = derive2 { name="exactextractr"; version="0.8.1"; sha256="11s58vc63r9kah815a18ihb0x2nmnjnpngybw3yr2d6715sz89nc"; depends=[raster Rcpp sf]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exampletestr = derive2 { name="exampletestr"; version="1.6.5"; sha256="144rfi83g79xhw3v5vn4qfqmxixy9pk2ir8dm42qk0jhd9v2awng"; depends=[checkmate fs magrittr ore purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; exams = derive2 { name="exams"; version="2.3-6"; sha256="1cn0gmaayv857zl7l7zmnblmpx84qkjxqrigrymy578y04qjc4zx"; depends=[]; }; @@ -9076,13 +9089,13 @@ in with self; { exams2sakai = derive2 { name="exams2sakai"; version="0.3"; sha256="0lgnk2g4q0vbkvcrhb815lah24rhaknnmsbhhkgbdkl0c5mx1yjg"; depends=[exams glue stringi stringr xml2]; }; exceedProb = derive2 { name="exceedProb"; version="0.0.1"; sha256="02pb8b0rxygbv6501rcr2hb0bhz1r78k5znav161kk25fb9bxs5v"; depends=[BH Rcpp]; }; excelR = derive2 { name="excelR"; version="0.4.0"; sha256="1pb4sy54zjv5vrh7gjjv7qlpab74km6mfsmfyl0yhmr0jx01hrw0"; depends=[htmlwidgets jsonlite]; }; - exceldata = derive2 { name="exceldata"; version="0.1.1"; sha256="03s284pvbvhxzmqbdx00ic4a2xyg3y3hzr1ks913bxacz46g157d"; depends=[dplyr ggplot2 lubridate readxl scales]; }; + exceldata = derive2 { name="exceldata"; version="0.1.1.2"; sha256="00vc4bc9nxkfzrzafh3fjvkmwglvbcbzbnj5inf5y1zzan4ppf8q"; depends=[dplyr ggplot2 lubridate readxl scales]; }; excelstrippr = derive2 { name="excelstrippr"; version="0.1.2"; sha256="1ly76qja9b5l3xwfhigm1apd114y2iq5wdl27sd2h1y80n8xxf2v"; depends=[dplyr readxl tidyr]; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; }; excessmort = derive2 { name="excessmort"; version="0.6.1"; sha256="0qkj30csq96qg7r8vdl79n31dhz69vh49qz4gpb3r2fr32pn497k"; depends=[dplyr ggplot2 lubridate rlang scales tidyr]; }; excluder = derive2 { name="excluder"; version="0.3.3"; sha256="080my5aiql9vpgqbr9lwkn4g5mmb20392ddc3rm638dlyphagips"; depends=[cli curl dplyr iptools janitor lubridate magrittr maps rlang stringr tidyr tidyselect]; }; excursions = derive2 { name="excursions"; version="2.5.2"; sha256="1a0vywxhh0bxjcf8v5gdk1n6cjxrby7750a7qdwhzsgxna3l3gga"; depends=[Matrix sp withr]; }; - exdex = derive2 { name="exdex"; version="1.0.1"; sha256="15wdi24fq8q4ja4527k1adv6lkzyhylp8nwlsrb91q0sbmmprrqs"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; + exdex = derive2 { name="exdex"; version="1.1.1"; sha256="0z3an0s2rm5d369jc9p3brwfc6pnakwj247c3gkz1i8izvf64s57"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; @@ -9092,11 +9105,11 @@ in with self; { expDB = derive2 { name="expDB"; version="0.1.0"; sha256="0h7f9127vrd45lg7k0bkgq3cghxwv2z11p4pak20pakk13g82hj4"; depends=[DBI dplyr lubridate magrittr png readxl reshape2 rlang RSQLite stringr tibble tidyr tidyverse weaana]; }; expSBM = derive2 { name="expSBM"; version="1.3.5"; sha256="0k8nkwqrcmmhv0x8a2np1rm5cyc9glyvndwdbnp03v0wrg8121sw"; depends=[blockmodels gtools mclust Rcpp RcppArmadillo]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; - expectreg = derive2 { name="expectreg"; version="0.51"; sha256="0ab9xkfa3wkhrzj7lj6jgdcxzgp1xjsk6ah71f6qd11bafq7j720"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; + expectreg = derive2 { name="expectreg"; version="0.52"; sha256="1cb2k3ndzxw9sd9znmmd0f2pfpa1lvvvm9vvj3z44b4vcb2lf9vl"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; experDesign = derive2 { name="experDesign"; version="0.1.0"; sha256="1v2j3jyxyzwkzc3y5n6pzd31yigkfwcmf12df3104m3kn86iq81r"; depends=[]; }; experiment = derive2 { name="experiment"; version="1.2.0"; sha256="0f8h4pj2y7cd2s1q44q4mrg9cirnpz0bkn4xm04hz1rpjxb4xlv1"; depends=[boot MASS]; }; experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; - expint = derive2 { name="expint"; version="0.1-6"; sha256="0iai25cglcdnf44d2d1fz1xpw4q600my4zq4493fk4cs5673mlf7"; depends=[]; }; + expint = derive2 { name="expint"; version="0.1-7"; sha256="01d0a7pc4qx7044a0cymnv5ld88r90vdvlqjbnzg9qlfbizdgyvw"; depends=[]; }; expirest = derive2 { name="expirest"; version="0.1.2"; sha256="1fzgs8pniypgd1ws5dkiylgjdwgxwyrblcnvirmwfzcrgyvbmwfs"; depends=[ggplot2]; }; explor = derive2 { name="explor"; version="0.3.9"; sha256="0sfpw9lgpr9hyn93jwxhijbfqnj466wc5ilszki2r7ziik3nb79i"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; exploratory = derive2 { name="exploratory"; version="0.3.13"; sha256="164ykw514gfj185ckg3p8jfn7y5al12iab34fqyrkrqpj84gf1qd"; depends=[data_table DT ggplot2 ggridges lemon lm_beta mediation remotes shiny shinydashboard weights]; }; @@ -9108,7 +9121,6 @@ in with self; { expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; expss = derive2 { name="expss"; version="0.11.1"; sha256="11g50v3cgr7j1gi9i301lbl58dhjsfhw0x7462fgldwr90k3b94z"; depends=[data_table htmlTable maditr matrixStats]; }; - expstudy = derive2 { name="expstudy"; version="1.0.0"; sha256="1b66pfx8smrwwrryxa8rmn4gv692hmllqzy968fp7n58qzciv550"; depends=[assertthat checkmate cli data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect withr]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; @@ -9168,7 +9180,7 @@ in with self; { fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; fGarch = derive2 { name="fGarch"; version="3042.83.2"; sha256="06c6f07bg05cbn7s40ak6ywyja4cfbznazj5my9rcyahjvc6b553"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; - fHMM = derive2 { name="fHMM"; version="0.3.0"; sha256="1ahlvb85y9m8025id7m0bx90csq07ikwiadfmqh4y95d2milwya0"; depends=[MASS progress Rcpp RcppArmadillo tseries]; }; + fHMM = derive2 { name="fHMM"; version="1.0.1"; sha256="0jn102zap2p4naid1li5vwlv713nqcsilik8sgnqfjq662h8ivdl"; depends=[foreach MASS progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="3042.85"; sha256="0rm4mwhk5ial016vl6dny8s87gd5i9p04akdyg2fndpcqwfmb5lc"; depends=[timeDate timeSeries]; }; fMRIscrub = derive2 { name="fMRIscrub"; version="0.8.6"; sha256="0ky2a4p06p2c2dgb6wwa4spq4jsn4hvyk8c864c21j8hp6m4yaa9"; depends=[e1071 MASS pesel Rcpp RcppArmadillo robustbase]; }; @@ -9183,7 +9195,7 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.4.3"; sha256="08wb7r6mzcxfb87nwyicklj43j6vrvdbws7gawxrqfb1x4xi6q30"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.4.4"; sha256="02xpndws34wh6kfk677kmpnhhxyxnwpg6asdfdn3wr44rcr7zk2v"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.1"; sha256="185l3gd83nys11k389ha2ssdm9rkw9aackmz2cd2mvlym72rsnq7"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.3"; sha256="0rjy5kj10sw2i9ghrsz67l40j7niw9mxm14kzg6prnc34200ki0n"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; @@ -9195,7 +9207,7 @@ in with self; { factiv = derive2 { name="factiv"; version="0.1.0"; sha256="1m43kg8mrlnkzs667s4a8c2jkfdgv2pjbwf45vf2w4nlp84camxx"; depends=[Formula generics]; }; factoextra = derive2 { name="factoextra"; version="1.0.7"; sha256="1allvdjhd3pq8xz30b1cymwcik5iaahghrjrlnn54cwkfhfg0kv2"; depends=[abind cluster dendextend FactoMineR ggplot2 ggpubr ggrepel reshape2 tidyr]; }; factoptd = derive2 { name="factoptd"; version="1.0.3"; sha256="1ir50im3kr1xhqk4qwrm2h5fq9gqgrwshbamvjlf8n1wnn03mcb6"; depends=[MASS partitions]; }; - factor_switching = derive2 { name="factor.switching"; version="1.2"; sha256="1va8xah0r7622svybv9r2v0s9wbl15p4lkrbqmaf5p5izijg32xs"; depends=[coda HDInterval lpSolve MCMCpack]; }; + factor_switching = derive2 { name="factor.switching"; version="1.3"; sha256="1hd2m9yyk9vbpknm7gyhgr6ywv84a1q5w46cspxp92nal784b5x3"; depends=[coda HDInterval lpSolve MCMCpack]; }; factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; }; factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; @@ -9215,7 +9227,7 @@ in with self; { fairsubset = derive2 { name="fairsubset"; version="1.0"; sha256="0iw16fs2mb9p14vr34izw3sirbndyy8w07df3scy7gkkcx2nz2bz"; depends=[matrixStats]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; - fakemake = derive2 { name="fakemake"; version="1.10.3"; sha256="027bzqp1knari0a0v9pljzvjsvf0lcgxi4w25lq482b9a1gs36fm"; depends=[fritools igraph MakefileR]; }; + fakemake = derive2 { name="fakemake"; version="1.10.4"; sha256="04k5dkfw07np0fgpp0n9zzswfnk2qrvv2dzghqb4mwasnlffqz57"; depends=[fritools igraph MakefileR]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; fam_recrisk = derive2 { name="fam.recrisk"; version="0.1"; sha256="1lyrq7bq7p7ijc2vf545nazw4akncz08548ya1dv3lsc5jmkgfzj"; depends=[]; }; @@ -9223,12 +9235,12 @@ in with self; { famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; familial = derive2 { name="familial"; version="1.0.2"; sha256="1pk4l8bgfs6nl8d3w8gksv4szfbqnw6sv0lzh1piyvkpyylfm1i7"; depends=[DepthProc ggplot2 matrixStats]; }; - familiar = derive2 { name="familiar"; version="1.0.0"; sha256="04shvnx81vppswyj3x4zi4rp0mll8l165ckmv27fsbgf5iija70m"; depends=[data_table rlang rstream stringi survival]; }; + familiar = derive2 { name="familiar"; version="1.1.0"; sha256="0jcask0qw9gjy0cp7fyvvqqz77rjqrwdgsqzxzivs02i1r8l849m"; depends=[data_table rlang rstream survival]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; - fansi = derive2 { name="fansi"; version="1.0.2"; sha256="0mxm06png4lrl5gy5giws5dgig2faryang8y0wcvwfk120pczqni"; depends=[]; }; + fansi = derive2 { name="fansi"; version="1.0.3"; sha256="0sn0kflgcn2qrrv646pzqylm02cx8l5ws473ppmvla4xihyvi9w6"; depends=[]; }; faoutlier = derive2 { name="faoutlier"; version="0.7.6"; sha256="0dd8k5s0yv047p10jisqz13nflby4y0dg97r0nbjygzcq1ryx2bs"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; }; faq = derive2 { name="faq"; version="0.1.1"; sha256="0knajqm9ydsjhn6xymfrcyf2b1kgfbiai8ai2zlm7p4mgfry504h"; depends=[htmlwidgets jsonlite]; }; far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; }; @@ -9253,15 +9265,15 @@ in with self; { fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; }; fastNaiveBayes = derive2 { name="fastNaiveBayes"; version="2.2.1"; sha256="04hv4jdhan1vbsixzbifa7hpmc531gv7c2dd1fx5700c2wlkja1n"; depends=[Matrix]; }; fastOnlineCpt = derive2 { name="fastOnlineCpt"; version="1.0"; sha256="0grkgj8kwqblikgw5pg4vdp41qd9s4cd7dzih3ima31fdw8ssi3c"; depends=[Rdpack]; }; - fastR2 = derive2 { name="fastR2"; version="1.2.1"; sha256="15mqsdy79zvd4srrszdjp0kh9lfcq3yxp7j5d4xcqbjbwsgy68il"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; + fastR2 = derive2 { name="fastR2"; version="1.2.2"; sha256="0s0nff8j0lxby3v8wr388dgry3kais58p8dbygfy15zppcnixkh6"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; }; fastRG = derive2 { name="fastRG"; version="0.3.0"; sha256="1qxbdgn9id9dhavlwf242cr9pk7pwaj93cvv00jaidiq6rlslnq8"; depends=[ellipsis glue igraph magrittr Matrix RSpectra tibble tidygraph]; }; - fastRhockey = derive2 { name="fastRhockey"; version="0.1.0"; sha256="03md9hvm34q5qgqcaf81ysw62m1f61fv0drpf8k8k3lysfv6pxj1"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; + fastRhockey = derive2 { name="fastRhockey"; version="0.3.0"; sha256="15iwwgl1mm6y59nz6v0866xw8p1pnnwfg1r5c3pqwina0gmcjxnv"; depends=[cli data_table dplyr glue httr janitor jsonlite lubridate magrittr progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; fastSOM = derive2 { name="fastSOM"; version="1.0.1"; sha256="1fzy7lfx1fn9993h0qh6vbwq0w4gfgbdrprmzb1z3aqq6nqvmngm"; depends=[]; }; - fastText = derive2 { name="fastText"; version="1.0.1"; sha256="0l0pkr3a8qckvzazh6rsz94rab8v96y4wis2my29srkwv4h447bn"; depends=[data_table ggplot2 glue Rcpp]; }; + fastText = derive2 { name="fastText"; version="1.0.2"; sha256="1dv3ckbik10qqr91rq9i4f37kz74j1zd4kndkd5d71c1lsag0ra4"; depends=[data_table ggplot2 glue Rcpp]; }; fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; fastadi = derive2 { name="fastadi"; version="0.1.0"; sha256="0vrsz2vf2rxj2vyv1dcjwy8g7s942j5695lb7jkmdaw6lp3k4gh0"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; - fastai = derive2 { name="fastai"; version="2.1.0"; sha256="1ssmx49c4qzvr4m84s8vwyrg890l2vfglh9rqkf4ljc1x2bkf8z1"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; + fastai = derive2 { name="fastai"; version="2.2.0"; sha256="19hybrmcrlgawayvl0wxr646dmxmwjap64wdhd023rclby1nsg4c"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; @@ -9287,7 +9299,7 @@ in with self; { fastqq = derive2 { name="fastqq"; version="0.1.2"; sha256="1p5xjwcwsgxyva6y6g9d0m6pvdwih97rassw6n2a85dsl8c4kmfk"; depends=[Rcpp]; }; fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; fastshap = derive2 { name="fastshap"; version="0.0.7"; sha256="0gxch67i3bj6m8nb94m5hswq058w6n1q9war4dy2qnimlv7cmhdv"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; - fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; + fasttime = derive2 { name="fasttime"; version="1.1-0"; sha256="00290sxfa6nihahm3s9bslpsmyfm0cpziajmr9mg7grxrzx53ia6"; depends=[]; }; fastverse = derive2 { name="fastverse"; version="0.2.3"; sha256="1jp9lipx19zihakjp2la8rk4pxks0p8saagp75nr0xq2vdylqg27"; depends=[collapse data_table fst kit magrittr matrixStats]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; @@ -9329,7 +9341,7 @@ in with self; { fdasrvf = derive2 { name="fdasrvf"; version="1.9.7"; sha256="06kq9rlszydr55sg17yybwa89qd4d1826jyw4kmx4aligx7ycqq6"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; - fddm = derive2 { name="fddm"; version="0.4-1"; sha256="1mwi4xlklhwmmrw5zyhz37k0kzda2d4md5qjnrhn4q9kp24akljb"; depends=[Rcpp]; }; + fddm = derive2 { name="fddm"; version="0.5-1"; sha256="1jn2hrl322an64q5m9rq1lifmilbzx65mb3mfhqfg8nvsgrpsffw"; depends=[Rcpp]; }; fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; fdm2id = derive2 { name="fdm2id"; version="0.9.6"; sha256="14bln0vx3qjgqb27dpl0fcd60bk42bha75ki6lkn4w1hrhcd1rr8"; depends=[arules car caret class cluster e1071 FactoMineR flexclust fpc glmnet ibr irr kohonen leaps MASS mclust mda meanShiftR nnet pls questionr randomForest ROCR rpart Rtsne SnowballC stopwords text2vec wordcloud xgboost]; }; fdq = derive2 { name="fdq"; version="0.12"; sha256="198nsyzv0ni2mjx12wik58c7z5vrc1mfk80k3iv94dz1iq9fprqf"; depends=[data_table Fgmutils ggplot2 randomcoloR sqldf]; }; @@ -9355,7 +9367,7 @@ in with self; { fedmatch = derive2 { name="fedmatch"; version="2.0.5"; sha256="1k6gj0aaihxqwvvvic8s5bhjqlxg6m37yj3bk9hbxy1lijv89w8j"; depends=[BH data_table forcats magrittr purrr Rcpp scales SnowballC stringdist stringr]; }; fedregs = derive2 { name="fedregs"; version="1.0.0"; sha256="171j6r6qxnx9gk9x9gpdyh51ssrgmf7sczc4889qr3qqw15sm4bn"; depends=[dplyr httr magrittr purrr rvest stringi tidyr tidytext xml2]; }; fedstatAPIr = derive2 { name="fedstatAPIr"; version="0.2.0"; sha256="07pr6c4275jb9dkx2pdrkykqawlxdmp3g6v4v2kzsnrcdlxs0h57"; depends=[dplyr httr jsonlite magrittr readsdmx rlang rvest stringr xml2]; }; - feisr = derive2 { name="feisr"; version="1.2.0"; sha256="012rspsw1xwl11gdr3nlpdmf24y9d2shwj81iqj1xill3l0mchwc"; depends=[aod dplyr Formula plm Rdpack]; }; + feisr = derive2 { name="feisr"; version="1.3.0"; sha256="1i89w3n365k4fwgiifb2f68ag11f96rrxqxradrjvbmi7r80md99"; depends=[dplyr Formula plm Rdpack]; }; fellov = derive2 { name="fellov"; version="0.1"; sha256="0z4b08ykajzwa5852dknqz5qqlmhklbwdq8x5zhyfmwba5zfbjav"; depends=[]; }; felp = derive2 { name="felp"; version="0.2.3"; sha256="05380225n0l2p8x4yr41frgvfzfl8x5b18v7qn8a4j9afki9y1g5"; depends=[curl prettycode]; }; fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; }; @@ -9363,15 +9375,14 @@ in with self; { fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; - ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; }; - fflr = derive2 { name="fflr"; version="2.0.2"; sha256="057m2lgzfvid4618vlzmxgrw7vg1bff6i0qy8b2khk8dynk8p25v"; depends=[httr jsonlite tibble]; }; - ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; + fflr = derive2 { name="fflr"; version="2.0.3"; sha256="15nwbf7n9x065sahhp31rdrramqigki9w67x1xyll86g8ndfwn98"; depends=[httr jsonlite tibble]; }; + ffmanova = derive2 { name="ffmanova"; version="1.1.1"; sha256="19kdlcslqnwcsdjxx0n86is5cjz21sn8vpylyq8s4i7q7nrlyxwp"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; - ffp = derive2 { name="ffp"; version="0.2.0"; sha256="1bx9ymd7mmic01wkwaczdxw1y4a7cb8ayl42k743hznqnr8vrpmn"; depends=[assertthat crayon dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim nloptr purrr rlang scales stringr tibble tidyr vctrs]; }; + ffp = derive2 { name="ffp"; version="0.2.1"; sha256="1xrxn63znl56glcvk4c1arqm4zzdpxx5wrkn48c8i10ppxswjj3y"; depends=[assertthat crayon dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim nloptr purrr rlang scales stringr tibble tidyr vctrs]; }; ffscrapr = derive2 { name="ffscrapr"; version="1.4.7"; sha256="1qfclfvz1xa9mamn9rjmwyrrpsj8cr6ri5040g2gfxjag0by5n21"; depends=[cachem checkmate dplyr glue httr jsonlite lifecycle magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; ffsimulator = derive2 { name="ffsimulator"; version="1.2.0"; sha256="134qcvi698ynrf3c1pg4mfd5hf2jv4x5qh1jsldfy1fhmrnaxj81"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; - fftw = derive2 { name="fftw"; version="1.0-6.1"; sha256="1s16r8qr1w85k5i0wfj4gc3cnwqg3yx2nbk9mcfb3j95jx7jphzz"; depends=[]; }; + fftw = derive2 { name="fftw"; version="1.0-7"; sha256="07isxi72ppw7p3inn3pmwr2ha51p981iz3diw3rhgqc4gd3677zn"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-11"; sha256="0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; fgdr = derive2 { name="fgdr"; version="1.1.1"; sha256="12rccdh1dmh8azwid8wgkdz8d7lqrdzr5n294j2fawqf4naff2gm"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; @@ -9394,8 +9405,9 @@ in with self; { fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; + fig = derive2 { name="fig"; version="1.0.0"; sha256="1mzvng4r4xmkmbl55pspjk9bcvkri96vkmjaqkjn8nqxv39sy1pr"; depends=[R6]; }; figpatch = derive2 { name="figpatch"; version="0.1.0.1"; sha256="1chshlyc3ygyvgzyph4mix3a6kvv4w0vbnss58472h0mgl7mgx8v"; depends=[ggplot2 magick patchwork]; }; - file2meco = derive2 { name="file2meco"; version="0.2.1"; sha256="1m9r7vp766p4lsbzpfzwfp37ylrbnsz63fwnl0h4ykcfqmf9b12m"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; + file2meco = derive2 { name="file2meco"; version="0.2.2"; sha256="0j4mcap10b0rplcsh8b8p41vpag2m7y9d7kyw7zn1w01vm0k9y2g"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.3"; sha256="10kpr5c7yq9hk1b6x611vi1pcsis0x1xpi0rs1dqgv310hswa0k5"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; filehash = derive2 { name="filehash"; version="2.4-3"; sha256="1ga17smgjd4qsnf5a7qk0giwhpc5969ylqj520favs1k6b4y557k"; depends=[]; }; @@ -9409,23 +9421,23 @@ in with self; { fillr = derive2 { name="fillr"; version="1.0.0"; sha256="1gx1ihp8j90ywmm6mmmfq4jd6apxawk9s5dfw3jq0wm1c290zqpv"; depends=[]; }; filterNHP = derive2 { name="filterNHP"; version="0.1.2"; sha256="0kk6548nr5786ywa83v8by4c1n7ljh9sy4fshpfqizp49fv9zv22"; depends=[data_tree rclipboard shiny shinyBS shinyjs shinyWidgets]; }; finalfit = derive2 { name="finalfit"; version="1.0.4"; sha256="1cfyl8w488v8ax15jb4xjddd4r8ilhljhamzk3kjbdy8039l0sa4"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr]; }; - finbif = derive2 { name="finbif"; version="0.6.3"; sha256="0xpa8k66vgglzf860qw0lyyck63lxgi9zvmms0fzr35fxcfcmna3"; depends=[digest httr jsonlite lubridate lutz]; }; + finbif = derive2 { name="finbif"; version="0.6.4"; sha256="1r2nl6n1d55x49iykzga0wi80zsybd7zmldix5bkc5qkca5xvzk8"; depends=[digest httr jsonlite lubridate lutz]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; findInFiles = derive2 { name="findInFiles"; version="0.3.0"; sha256="1cnnx9ky1pd0aj3bf67z75b0dgmdgj90w0yjxlrny42a7iqnyw4n"; depends=[crayon htmlwidgets stringi stringr tibble vctrs]; }; findInGit = derive2 { name="findInGit"; version="0.1.1"; sha256="1j5mvp34nsczmvp5jx7c9gp20q7aqaxrqm2zvj8aq31rc8mfaxk9"; depends=[crayon htmlwidgets stringr]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.7"; sha256="0jf10jpqla90x03kl3k77gnd255zmw9rvr8d724vb17cqawh9yar"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; - finetune = derive2 { name="finetune"; version="0.1.1"; sha256="0yi76ww7m4nfd1b7cd3ixarbjwpzh8g016byz2pvchmz2mb10s6h"; depends=[cli dials dplyr ggplot2 purrr rlang tibble tidyr tidyselect tune vctrs workflows]; }; + finetune = derive2 { name="finetune"; version="0.2.0"; sha256="07lng61slbrk1n6j4x16d9cr0yq7wsd0df85imcwjvk94yg2j44z"; depends=[cli dials dplyr ggplot2 purrr rlang tibble tidyr tidyselect tune vctrs workflows]; }; fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; finity = derive2 { name="finity"; version="0.1.4.1"; sha256="0xs3vx0vj165hj4dq8ivrdf6fcvj23zhp2ai79rgpyb5rr5ndkvc"; depends=[BH Rcpp RcppArmadillo stabledist]; }; finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; - finnts = derive2 { name="finnts"; version="0.1.0"; sha256="1jvyl2c7szl4xwv5kyd3d1cm7cpmfjqlpg42kpvxqf1bvsbrws6n"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; + finnts = derive2 { name="finnts"; version="0.1.1"; sha256="0r76p2lfc39cs3rziq2psk3fia3y58daz2a91xadfkahii0hmy2q"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; - fipio = derive2 { name="fipio"; version="1.1.0"; sha256="1y153096wkihzcwcycf492wbc4mwlmqsm8hyjljx3zddmx2iklvk"; depends=[]; }; + fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; firebase = derive2 { name="firebase"; version="1.0.1"; sha256="0sdv3l13byqn4sfp360scj4260adyvnbvzxkc88zvg3k33fx5hmn"; depends=[base64enc cli htmltools jose jsonlite openssl R6 shiny]; }; firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; @@ -9448,7 +9460,7 @@ in with self; { fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitbitViz = derive2 { name="fitbitViz"; version="1.0.4"; sha256="1cp5nkaj9ikqcv3yp030id1wklj3jnx002sz2ib0vzza81zyw8bw"; depends=[data_table ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lubridate magrittr paletteer patchwork raster rayshader rstudioapi scales sf terra varian viridis XML]; }; fitbitr = derive2 { name="fitbitr"; version="0.2.0"; sha256="1v5mhqdiynla7rmspxp5bg6xjjxac0y3qh2nv82pr3fvzvxrrqz8"; depends=[dplyr httr janitor jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-6"; sha256="1glnbcm1gghzgvzpxcfsmn7dp2f9jqyx39n3ydwp9fx38409khhp"; depends=[MASS survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-8"; sha256="0nhgjvwya95v6b9khbsgp44lw10xg35w61lmka1v6wq7yh827izk"; depends=[MASS survival]; }; fitmix = derive2 { name="fitmix"; version="0.1.0"; sha256="1z7jgxz119lkyggmgpykcslv56z1i7pnbp872jkdni77sx94x89c"; depends=[]; }; fitplc = derive2 { name="fitplc"; version="1.2-3"; sha256="1yg3ch907c4gk7q8hxgwqxgngkmy125j3ni917nkzi7hn59krd1n"; depends=[car nlme]; }; fitscape = derive2 { name="fitscape"; version="0.1.0"; sha256="0y9x0n61y366f35d594523l3c5sjaf87msxhnlbs2w3g7d53yvfb"; depends=[]; }; @@ -9457,8 +9469,9 @@ in with self; { fitzRoy = derive2 { name="fitzRoy"; version="1.1.0"; sha256="1vv1sahxbabmqh3h8p60af8xbjp3irp2nmdd3a1w4nwjpykycrqy"; depends=[cli dplyr glue httr jsonlite lubridate magrittr progress purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0.1"; sha256="18cqbxrs69p60anvii22mhqkwh5y2mxapmznff9g7j1j6h4h62lr"; depends=[]; }; + fixedincome = derive2 { name="fixedincome"; version="0.0.1"; sha256="02acsrkhh95k4z3y0h7ip41w3snhc74wisx5k0brz6kwqpsqilfx"; depends=[bizdays]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.10.3"; sha256="1idc20ih5qmifi0w74zp1ak19qcz4k0718i2210k0b2rc2axl4fm"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixest = derive2 { name="fixest"; version="0.10.4"; sha256="0xwjf61k0sxlgpjmzys0j6mcgvvxidr6k47kqv68yjl46j90s0i0"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; fixtuRes = derive2 { name="fixtuRes"; version="0.1.3"; sha256="1vmdbx1pfk4kcxq5q5hj4v6rz403xw66gpg6zpvrxkpcgkx2dwyz"; depends=[checkmate dplyr glue lubridate purrr R6 rlang stringi yaml]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; @@ -9492,7 +9505,8 @@ in with self; { flextable = derive2 { name="flextable"; version="0.7.0"; sha256="15vr5lb87712mymsvv01kz9s1fb54sx5kybsa2x547k5g10dbrbm"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.1.1"; sha256="0wgiikbz8jm3pgj47jad9mzvdgbp1wbwfr3ps0ncrk11vdw2iqpf"; depends=[data_table httr parzer pbapply rvest]; }; + flightsbr = derive2 { name="flightsbr"; version="0.1.2"; sha256="15ws4gykms0wqdaabk1lc7cbkfzgblphq16fh85k38lay4fclvh6"; depends=[data_table httr parzer pbapply rvest]; }; + flimo = derive2 { name="flimo"; version="0.1.1"; sha256="0j15zx1p2nb04hwxa8klmwpqc7gj0g2da8a03z01caf4si5cg5b1"; depends=[ggplot2 gridExtra JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.0.2"; sha256="13bzglcwd4r6q8ix8diy2dljns722k29zbd782fvkxc59ikx7dja"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; @@ -9501,7 +9515,7 @@ in with self; { flippant = derive2 { name="flippant"; version="1.5.3"; sha256="1d1rrmnhbbixkwscw2gqk6pm8jvvgikyrd4hzrpif4qd5xj833dj"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr pracma stringi withr]; }; flipr = derive2 { name="flipr"; version="0.3.1"; sha256="1k6ykmj58c6vv8p1cn2wy9amlyxgrw3vphh97bv0pqqxyhnrlxjm"; depends=[cli dials ggplot2 magrittr optimParallel pbapply purrr R6 Rcpp rgenoud rlang tibble usethis viridisLite withr]; }; flipscores = derive2 { name="flipscores"; version="1.1.0"; sha256="0pznbv8gq6jx0hd9dq6yjxyz4p75h8x0jznfa02yh4xdzjmamiw6"; depends=[car flip MASS plyr]; }; - float = derive2 { name="float"; version="0.2-6"; sha256="1bx5yxkb123001v31jjk7h7f0qissmjydvbil5cj3jvmqkayq1a1"; depends=[]; }; + float = derive2 { name="float"; version="0.3-0"; sha256="0m7bf3548vlgkk1c78jyrgj72ngwg0gsccap2iqinm3l3qrm4zbs"; depends=[]; }; flobr = derive2 { name="flobr"; version="0.2.2"; sha256="1khl7zld1fwigk20sl5ibacyrbln40pkfqpzpxj6si7m1q6yvv1a"; depends=[blob chk lifecycle]; }; flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; @@ -9546,7 +9560,7 @@ in with self; { footBayes = derive2 { name="footBayes"; version="0.1.0"; sha256="1q2xcrrw4x2jdvxr5q3l9lh0sfg3wjw06s9qzil11pb93h5l2ik6"; depends=[arm bayesplot dplyr extraDistr ggplot2 magrittr matrixStats metRology numDeriv reshape2 rstan tidyverse]; }; footballpenaltiesBL = derive2 { name="footballpenaltiesBL"; version="1.0.0"; sha256="1my67157frp4pxl84sb6dnb7rzp99g59mp9iwwv1s6wc391zfbsp"; depends=[]; }; footprint = derive2 { name="footprint"; version="0.1"; sha256="00m3jaxiacf9wxa0wg0qxhp6c0prbf2l5c2cid6anz8rc5b6angv"; depends=[airportr dplyr magrittr rlang]; }; - foqat = derive2 { name="foqat"; version="2.0.1"; sha256="1p607kiw04cq6jrpbmcmpaqilaa2c1mhvqz10fld01mz6k29f7p0"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; + foqat = derive2 { name="foqat"; version="2.0.7"; sha256="1hc1ymahch38r9k5i0rfkyv17ybc7pbn69lbnin2gvyq9c9da772"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; forImage = derive2 { name="forImage"; version="0.1.0"; sha256="1p8zfndvm7x7pnryphz944hgxcchvc6mwnr6ap15m0i6kwsh0nb4"; depends=[dplyr magrittr reticulate tibble]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="0.5.1"; sha256="12d2nv2w15085jscgidmjdnr1ryymciflcmal6ldmgp2fkl9dyy4"; depends=[ellipsis magrittr rlang tibble]; }; @@ -9570,19 +9584,20 @@ in with self; { forestmangr = derive2 { name="forestmangr"; version="0.9.4"; sha256="1zlp7lnawbfqw60552cwnh280spqj7p2qvn2xwz5y7wly2d7d4fm"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="2.0.1"; sha256="0bzwi6ws0qjq1pqiadssynbkxxd4zjp974jfdplmv16fcyszqhyi"; depends=[checkmate magrittr]; }; - forestploter = derive2 { name="forestploter"; version="0.1.2"; sha256="1vqc1prlzgssc7ywvlgd7c6rysrmb9145fh9akhra6rs1pnrv9pf"; depends=[gridExtra gtable]; }; + forestploter = derive2 { name="forestploter"; version="0.1.4"; sha256="0ndfdqziqq1759g1kgx8vhpx0dyjafj2k7z48gklp43mwi6m5cj8"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; forge = derive2 { name="forge"; version="0.2.0"; sha256="0pjfzsc35agkh0zfw2czwajkbsyn6liys5irl5bhz5r1vim3jmwa"; depends=[magrittr rlang]; }; - formatR = derive2 { name="formatR"; version="1.11"; sha256="0353aj975mj0yjc91z76bbfy86y7d5cvlqqyfr93cdng14nnd0dx"; depends=[]; }; + formatR = derive2 { name="formatR"; version="1.12"; sha256="12wch1774113nlrc0lihfn5rbh4hln9sg6dv6zc2bvyb8fzyyllb"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.1"; sha256="1vdxi0xmg019qyzjrp8bkjxciz245jcxsrkhfzd44ynqcwi4s3ag"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; + formatters = derive2 { name="formatters"; version="0.2.0"; sha256="0lsdx90bbcfpkl3kh8lnh3lj8z6jq5z6b69sh29bcgn7720dix81"; depends=[htmltools]; }; formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forplo = derive2 { name="forplo"; version="0.1.0"; sha256="15zkzq8vb6ydvic3r2lsna64vqlq12225cpdr7dsrfkn6kqjjzd5"; depends=[]; }; forrel = derive2 { name="forrel"; version="1.4.1"; sha256="1328cbcnnpy3n8na2brxf2q5i3czkkiajri6zi5yfajwrb2vyg33"; depends=[glue pedmut pedprobr pedtools ribd]; }; - forsearch = derive2 { name="forsearch"; version="1.0.0"; sha256="047iizf9pfgq292zkhkdwq44ij4kixvxd7d0qqyayckh3c1k9290"; depends=[Cairo ggplot2 Hmisc nlme tibble]; }; + forsearch = derive2 { name="forsearch"; version="2.2.0"; sha256="10ihwm75q72cgwqsk3i48wjl8z0ay5bn55ys7r5wmsdh9ak0gjzs"; depends=[Cairo ggplot2 Hmisc nlme tibble]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.5"; sha256="0cc0s534s32b9ark2zazwqhgy0zsxb2p63r6503v82784rpqv2yv"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.3"; sha256="07374a1ak5h8q3diqyvsw3q1grqi3679w9sshf1jkhlrj7wn0dmv"; depends=[]; }; @@ -9639,7 +9654,7 @@ in with self; { freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; freqpcr = derive2 { name="freqpcr"; version="0.4.0"; sha256="04s6yrzxk4v86nhs9mwam1y2lfac73r6i8af9xbbmrlzj61wiia9"; depends=[cubature]; }; - freqtables = derive2 { name="freqtables"; version="0.1.0"; sha256="0d2yibb8689786icfladxfm51sqng909wigvqmwij9lkqq14rd80"; depends=[dplyr rlang stringr]; }; + freqtables = derive2 { name="freqtables"; version="0.1.1"; sha256="03xcv08f8xzmrd6msk15vljp2srv59dzzs5ngkw1p2dv917w7dq3"; depends=[dplyr rlang stringr]; }; frequency = derive2 { name="frequency"; version="0.4.1"; sha256="0sjsc803ysyg2gfzb7z4jb2sikwxs99is2m03k5glfy3ylgphn0d"; depends=[DT ggplot2 gtools knitr rmarkdown]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.3"; sha256="1yzpgflldcdsd5kj0jpyj0vwx25f3l0x344glbrwvlwgdax9dkg8"; depends=[knitr pbapply urca vars]; }; frequentdirections = derive2 { name="frequentdirections"; version="0.1.0"; sha256="0rmifh221c8z3cqyqg0bfxnih9f64hvv98jz44i6grnlablfwwgw"; depends=[ggplot2]; }; @@ -9647,7 +9662,7 @@ in with self; { fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; frictionless = derive2 { name="frictionless"; version="1.0.0"; sha256="17an6wxwb9qcj42rsm3311jx1f2d91fpq0d0831xswngc548bmp5"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; - fritools = derive2 { name="fritools"; version="3.2.0"; sha256="1kjzc97ivz95rvhs0jzfvyfvznkcgklc7f9xplbim3yfl07w2hsc"; depends=[]; }; + fritools = derive2 { name="fritools"; version="3.3.0"; sha256="1qicnsyy5r25n2y307941j85j8x6qdy66awhz72jmyvrnhghmhac"; depends=[]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9671,7 +9686,7 @@ in with self; { fsr = derive2 { name="fsr"; version="1.0.1"; sha256="1h0ljb28nffjjjry93lsvw2i109g0mmjgdd335y7r3zgz1s34x2d"; depends=[dplyr e1071 FuzzyR ggplot2 lwgeom pso rlang sf stringr tibble]; }; fssemR = derive2 { name="fssemR"; version="0.1.8"; sha256="1rja69b6x5vc302nksh5m6ssp2lx8drv9gjnkv6j9xr3hd2407xi"; depends=[glmnet igraph MASS Matrix mvtnorm qpdf qtl Rcpp RcppEigen stringr]; }; fst = derive2 { name="fst"; version="0.9.8"; sha256="0r96inwrr960m7wmc80603bw2vvvwab225bh9dq3lalwhy4yiis4"; depends=[fstcore Rcpp]; }; - fstcore = derive2 { name="fstcore"; version="0.9.8"; sha256="1qicjwsm87wgjm5mxrsgi697fmcfz6wyqcxfgngwxrf8kq4awjsf"; depends=[Rcpp]; }; + fstcore = derive2 { name="fstcore"; version="0.9.12"; sha256="1a5m68n2dqhi3r8wf5jwg4vjvl550c7wypcf5j0xmkvl836yg1lg"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftExtra = derive2 { name="ftExtra"; version="0.3.0"; sha256="1aal3cwdp9gnc0gnigk7789rak3s6i5jav01d9z25gm977683b76"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; @@ -9722,7 +9737,7 @@ in with self; { future = derive2 { name="future"; version="1.24.0"; sha256="0xmj17fq9paww796490bmakv6pcvrzk15i8mzhxk1mp9l0mj32vv"; depends=[digest globals listenv parallelly]; }; future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; - future_callr = derive2 { name="future.callr"; version="0.7.0"; sha256="0y5x2xz29j7aidk3c1iby3dk23gpxmgzp4f5z5bdgd1w0n4jslg4"; depends=[callr future]; }; + future_callr = derive2 { name="future.callr"; version="0.8.0"; sha256="1nhkmxaaii647gizrxa8zj1iakivml7zrqi4bvvs5yshc7m9slg9"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; @@ -9751,11 +9766,10 @@ in with self; { gMWT = derive2 { name="gMWT"; version="1.1.1"; sha256="1vbw548fyrf012ry54p3gybdsil8c9llg2r9njhsiy7rb0gz2613"; depends=[clinfun Rcpp RcppArmadillo]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3-6"; sha256="0l95yvv3ig11k71xkvh0ivvkan4hvpmjsa12yg1laaaqiaqzzxnm"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRain = derive2 { name="gRain"; version="1.3.9"; sha256="00xqb6jwxqfda7ir218xz944rmzcxsnccc0is00lljlsdfy290wr"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; - gRbase = derive2 { name="gRbase"; version="1.8-6.7"; sha256="121kfjydl96gfi3x2fr7qd83ha6lcjn7a0bwlphn1pi1nphwgbxa"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; + gRbase = derive2 { name="gRbase"; version="1.8.7"; sha256="027qk7mcw6jyzkfjx15s5aj36drnbwl88wzh2d72phls08dpxmq1"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRc = derive2 { name="gRc"; version="0.4.4"; sha256="0p1m816al9djv5fhzgsgrbbbcpx5c5wjxvxwni6gs2cwxbxmdvcp"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; - gRim = derive2 { name="gRim"; version="0.2.5"; sha256="0m3lc42r6qd6kps3y7jz11ry4886cc87ld1s1phypna98qjy6gky"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="1.0"; sha256="0lixlirisnxk29zlrragi3l8j1abb5cl7zh6vhx7l5hjdvh8ldq9"; depends=[]; }; gStream = derive2 { name="gStream"; version="0.2.0"; sha256="1f4xnbavm99yhjmaahazigps41mqlfvvl29kf4fs1yjqr531y36b"; depends=[]; }; @@ -9772,15 +9786,15 @@ in with self; { galigor = derive2 { name="galigor"; version="0.2.5"; sha256="1lfw1kikf90nv9g0xrb656fbilmxdk64zrzi43wrz7y2y55sd5xv"; depends=[cli crayon dplyr gargle getProxy magrittr purrr rappsflyer rfacebookstat rgoogleads rmytarget rstudioapi rvkstat ryandexdirect rym tibble tidyr]; }; galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; }; galvanizer = derive2 { name="galvanizer"; version="0.5.3"; sha256="1b9431mmgpqyd49b8nlsrlxjq9j9fyj73226bi9jic1p867533kk"; depends=[dplyr httr jsonlite lubridate magrittr rlang tibble tidyjson tidyr tidyselect]; }; - gam = derive2 { name="gam"; version="1.20"; sha256="1zhy2fp7pxac8xp3z3hndhprj4s5gx3305b627vc78bal1ml3swi"; depends=[foreach]; }; + gam = derive2 { name="gam"; version="1.20.1"; sha256="1bbxiqfgi7jc9vw1hspw5q41d69nlw2v6k91zqlvmam5pvxcd1sp"; depends=[foreach]; }; gamCopula = derive2 { name="gamCopula"; version="0.0-7"; sha256="0zi9g2vxkn1hxc2qyyr1x8p1f9w7fc1j5dmm2mmm333gixkkz9nb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; }; gamRR = derive2 { name="gamRR"; version="0.7.0"; sha256="0zn8921a4i1lz5wpdfbd72pqb25r12abyqw7y2w53kfhdzs57f3l"; depends=[boot mgcv]; }; gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; gambin = derive2 { name="gambin"; version="2.5.0"; sha256="137z6dxrvf05ss9bqh96bsl8rm6gzpk7kdgnfqh355mn0m5h2zx6"; depends=[doParallel foreach gtools]; }; gamblers_ruin_gameplay = derive2 { name="gamblers.ruin.gameplay"; version="4.0.5"; sha256="0h5sfjs2lzs3cfx7q0agq68x4hhqmkiqga04c1gvnzwn8k7i8svc"; depends=[gganimate ggplot2 hrbrthemes viridis]; }; - gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-5"; sha256="1qlcsfv9k9aydv2bdfmbrilxfcmp3nzixnlr59k8idg1f7ph04cl"; depends=[mboost stabs]; }; gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; gamclass = derive2 { name="gamclass"; version="0.62.3"; sha256="0i2nynl4b46rdl8f2zashcg0dvlhcq9paq8hx5y40xpxm8iljqab"; depends=[lattice latticeExtra randomForest rpart]; }; + gameR = derive2 { name="gameR"; version="0.0.1"; sha256="15bzap2f80mrqklxlyy97nq452vy88l93bp8h4arqrzvhj7pjyqq"; depends=[]; }; gameofthrones = derive2 { name="gameofthrones"; version="1.0.2"; sha256="10ns4yl1s8adlf334gl8yararj1fpxbg3gy7h69s554m4h878awk"; depends=[ggplot2 gridExtra MASS]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; @@ -9816,13 +9830,12 @@ in with self; { gapfill = derive2 { name="gapfill"; version="0.9.6-1"; sha256="15mrn44v5l4sgxwlyp1rik5mdg7m2s6xxcdigc3sjd1yhxalgw12"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.1.0"; sha256="04dz7ns7xsa0q0v7sllaqlhk4mis8gvqzr2a1y4fiiqrk7337gmm"; depends=[ggplot2 reshape2]; }; gapminder = derive2 { name="gapminder"; version="0.3.0"; sha256="067cra1ca4ngwjx8d1y9pyzwcpsfi1wcal0glzyy6ghd1k6jflpv"; depends=[tibble]; }; - garchmodels = derive2 { name="garchmodels"; version="0.1.1"; sha256="1nmhsxhfbp7jn85jwnhm4p5kl0jc5n1bjwwwpia774ycr6krazwn"; depends=[dials dplyr magrittr parsnip purrr rlang rmgarch rugarch stringr tibble tidyr]; }; garchx = derive2 { name="garchx"; version="1.3"; sha256="0fpanzl6nfq6dar5chmqqfndb3w01mcypkhj0ya6v3d77m02b5mf"; depends=[zoo]; }; gargle = derive2 { name="gargle"; version="1.2.0"; sha256="0fypj70c1fjmvs57birik76wfx8a2fs4gzicbb52k57i6clwlijd"; depends=[cli fs glue httr jsonlite rappdirs rlang rstudioapi withr]; }; gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; garma = derive2 { name="garma"; version="0.9.11"; sha256="05jhac1cm82xjpz1dnwp7xcs58b3lxbzh4wmr4z7hkn5jdh3gsv5"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; - gaselect = derive2 { name="gaselect"; version="1.0.10"; sha256="14gz6429hap8gj7is0p9qigdzn1zzyqh1dykrpk4wvhqbid8ir73"; depends=[Rcpp RcppArmadillo]; }; + gaselect = derive2 { name="gaselect"; version="1.0.11"; sha256="18nrvad7qdrwgdi5a13kp2m26jsfdfdrwhv2azkrhfv285ziwd5q"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gasper = derive2 { name="gasper"; version="1.1.1"; sha256="10kl5d8lm2jvqrfk0qliyb3afmk9bhjm5zvs4g31zpa3icbz9r2p"; depends=[ggplot2 Matrix Rcpp RcppArmadillo RSpectra]; }; gastempt = derive2 { name="gastempt"; version="0.5.4"; sha256="02b35y0sq0piq5p8k5fviymqyqx1c2k793pm7j79xymmpzf8f52r"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; @@ -9831,7 +9844,7 @@ in with self; { gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.1.5"; sha256="0628bwazanqp8zkci93nyaa7hqwdwwlbcq4mwmkgf6xkbqmi00z8"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="0.1.6"; sha256="1c7v3a3610fgp4s70f5lsianmnxrg8zylm303xwrb0bdpkvn0bvm"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; @@ -9862,12 +9875,12 @@ in with self; { gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.0"; sha256="0nxnw9azlml13a6rqhxjrwq8v7fb2pjcb07dp5r2p5bzyzvldm7a"; depends=[sf]; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; - gdalcubes = derive2 { name="gdalcubes"; version="0.6.0"; sha256="05hgnplbps3kk7p19mf7j0a3dlf7061yxi2sq9p9ydaywav0z4ji"; depends=[jsonlite ncdf4 Rcpp]; }; + gdalcubes = derive2 { name="gdalcubes"; version="0.6.1"; sha256="0hw6q1gc9f23n9fd9h6ljrx3rjyk91x6b5m40c4hyng5xaxwvdhw"; depends=[jsonlite ncdf4 Rcpp]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; gdistance = derive2 { name="gdistance"; version="1.3-6"; sha256="093a29yb544gxldwxgkyfc9bhmz3by0pknnj1c666i6gz2rbxjic"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.5.0-1"; sha256="11pf56n8kdmqab88s2xhaz05jj19b5m758f6rfdm7qc01y97s3kb"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.5.0-3"; sha256="1vj38p7l36znha56c9dfm75z8rfpjhpmhzrsp3sqiwpvb650mmk8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; }; gdpc = derive2 { name="gdpc"; version="1.1.2"; sha256="0g1mnxm78n928g7qjf0w7jzfm27z6mvz5p1rm25mxv7wsif5m6s6"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; @@ -9897,7 +9910,7 @@ in with self; { genSEIR = derive2 { name="genSEIR"; version="0.1.1"; sha256="02lprxxpf7ll23habq05b6slgbh978k09sqr6myr2jhlax2snxvk"; depends=[ggplot2 minpack_lm nlsr pracma]; }; genSurv = derive2 { name="genSurv"; version="1.0.4"; sha256="07f6prqpc1mafzb8dyp8xgycrrd548rj9cpn3qz64lh1qjymns3m"; depends=[]; }; genTS = derive2 { name="genTS"; version="0.1.3"; sha256="1ky8h8yzqfkb91ny9z08gr7irzvjqr1b42k89ahcrmk458hjwgqr"; depends=[shiny]; }; - genalg = derive2 { name="genalg"; version="0.2.0"; sha256="1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s"; depends=[]; }; + genalg = derive2 { name="genalg"; version="0.2.1"; sha256="1y4qz1s85zpd1r3259gr542arssf2vpd4drhy0wnq5q47ignrvna"; depends=[]; }; genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; gencor = derive2 { name="gencor"; version="1.0.0"; sha256="1an1q4bbd5xqyy66wjzalx74iff0iia2sf2f1q9k17vh9zclgz41"; depends=[]; }; gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; @@ -9944,7 +9957,7 @@ in with self; { gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; gensvm = derive2 { name="gensvm"; version="0.1.5"; sha256="1r0f3l6df1sn3vx5sjssx8p35lw100q0qz6v1fckdfw04z53g4im"; depends=[]; }; - geoBayes = derive2 { name="geoBayes"; version="0.7.0"; sha256="0bjr77ifmpf5y560iwzm0sv8mkvz6c4isn78gmdy6m8531b11frh"; depends=[coda optimx sp]; }; + geoBayes = derive2 { name="geoBayes"; version="0.7.1"; sha256="02ksavydvl9v7fiyxpg0h1s308lc1si29rhpffnqz26jm40bvnvh"; depends=[coda optimx sp]; }; geoFKF = derive2 { name="geoFKF"; version="0.1.0"; sha256="0fapxfckyhgs1lzaviicnrhmjzdlkxfg2ccn46zcrybqq995g9js"; depends=[numDeriv Rcpp RcppArmadillo]; }; geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; @@ -10010,7 +10023,7 @@ in with self; { gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; }; gerbil = derive2 { name="gerbil"; version="0.1.5"; sha256="1rvf7z7zj04p2faj41fxxjs20bd3ghr6fbzkkapcx48fr4j9skj2"; depends=[DescTools lattice MASS mvtnorm openxlsx pbapply truncnorm]; }; germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.5"; sha256="1gazx0k4nhb9xsyqi0zxdzg9a0kfvf7g1gka7lgaj2f3bpyk0gd3"; depends=[broom data_table ggplot2 ggrepel mathjaxr minpack_lm plyr Rdpack]; }; - gert = derive2 { name="gert"; version="1.5.0"; sha256="1bm2fjyh527y6x0dr5cs8h31jgl1fkk09ljzj1h37d0c7f4k1hwz"; depends=[askpass credentials openssl rstudioapi sys zip]; }; + gert = derive2 { name="gert"; version="1.6.0"; sha256="0r19vi77yyjw5gbhgjibdysjlszlw2095v14f6sv675zpbp0li4c"; depends=[askpass credentials openssl rstudioapi sys zip]; }; gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; }; gesisdata = derive2 { name="gesisdata"; version="0.1.0"; sha256="02xjpw41gm3778lj01kcwjx0lr1i95a0wlrfvs0r5xlajq13jr67"; depends=[dplyr magrittr rio RSelenium stringr]; }; gesso = derive2 { name="gesso"; version="1.0.2"; sha256="0i7a927mbll8mlisxb0ic62fvq1wp5v0m69n7zkhcjabkxr7gbn3"; depends=[BH bigmemory dplyr Matrix Rcpp RcppEigen RcppThread]; }; @@ -10028,7 +10041,7 @@ in with self; { getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; }; getmstatistic = derive2 { name="getmstatistic"; version="0.2.2"; sha256="100m5cbwx9anlh1hzjv7d1h1viqsxb0bx0ksc1dsjx3gqrf77q1n"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; }; getopt = derive2 { name="getopt"; version="1.20.3"; sha256="0zzmzgwl9a4y3s34600vmih22d6y32294f9bvxrnmffnvkgmy7sk"; depends=[]; }; - gets = derive2 { name="gets"; version="0.29"; sha256="09y2r1hhq8ih04i0w23dzabxl85d9rc8l4k37lrzzcd22n61gz6s"; depends=[zoo]; }; + gets = derive2 { name="gets"; version="0.35"; sha256="0hk7x2cvqs71dynvla1r6fs2k1v8laqzf7vc8l4w18im82kvmiis"; depends=[zoo]; }; getspres = derive2 { name="getspres"; version="0.2.0"; sha256="190y4qrm1wawp0787zhw3g8h9s2smacvvxbs70pxbhysq4bkzcdd"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.4"; sha256="1j83pdny3phfflkdjwiflyfvighn73pysw5bac4hx079dda8k25g"; depends=[]; }; gexp = derive2 { name="gexp"; version="1.0-1"; sha256="1i3sarsawax1landjbm8gxrcrimwzdgrbybzipqwxdrmlgvxslqk"; depends=[jpeg mvtnorm png]; }; @@ -10042,14 +10055,14 @@ in with self; { gfilogisreg = derive2 { name="gfilogisreg"; version="1.0.2"; sha256="1825xaz4xjnhpmfrim6c9sfr50wyvpbmbnzbvvjqrn8d2gwcmim6"; depends=[BH EigenR lazyeval rcdd Rcpp RcppArmadillo roptim spatstat spatstat_geom]; }; gfoRmula = derive2 { name="gfoRmula"; version="0.3.2"; sha256="1pk1pzwc7zkvz9fjpd6lqymjashd9h5kvxx68v8lqi8ns3c0s477"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; gfonts = derive2 { name="gfonts"; version="0.1.3"; sha256="0dbpw93pa3asjddl2f2ih7149mkjfz3kywmz2623mfl0sm1x5g71"; depends=[crayon crul glue htmltools jsonlite shiny]; }; - gfpop = derive2 { name="gfpop"; version="1.0.3"; sha256="16h0v2jcydn95yb4pkba808hn20darq532yp7djqx1issr1fwqjr"; depends=[Rcpp]; }; + gfpop = derive2 { name="gfpop"; version="1.1.0"; sha256="0kqvna57q8a1ybzj5svw1k5qvnpd9n7c0jg6gyx1y00si3vazd84"; depends=[Rcpp]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; }; ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; }; - ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.0"; sha256="106n2r6l4grg0g8w8z5nb4fw33sh62nyssbqmkq1w82xs73529i4"; depends=[ggnewscale ggplot2 rlang]; }; + ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.1"; sha256="0s9dpjkphmavvhcrsdjr7i4nq39cp55k43y6jhkx2glc198a73fq"; depends=[ggnewscale ggplot2 rlang]; }; ggESDA = derive2 { name="ggESDA"; version="0.1.0"; sha256="0j2ix9abzsxdmjklg44ajz69hlhpg9a31rjqrwymrlkdgdswpzvk"; depends=[dplyr ggforce ggplot2 ggpubr ggthemes gridExtra gtools magrittr prodlim R6 rlang RSDA stringr tibble tidyr tidyverse]; }; - ggExtra = derive2 { name="ggExtra"; version="0.9"; sha256="18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj"; depends=[colourpicker ggplot2 gtable miniUI R6 scales shiny shinyjs]; }; + ggExtra = derive2 { name="ggExtra"; version="0.10.0"; sha256="1rd3qv6ah3zphr1jicjhgxms73vi496mjnxnsrcgl7z8nyxmas6w"; depends=[colourpicker ggplot2 gtable miniUI R6 scales shiny shinyjs]; }; ggHoriPlot = derive2 { name="ggHoriPlot"; version="1.0.0"; sha256="198l1jzs2wybg8ixq8aacrs3b7g2hpxbi7gajr2z5hyiv7317lrq"; depends=[dplyr ggplot2 glue magrittr stringr tidyr]; }; ggOceanMaps = derive2 { name="ggOceanMaps"; version="1.2.6"; sha256="1ac3n5fw00w2ganfbzgpinwpzp51qqdw8hv691qmivwxxgkzj2zp"; depends=[dplyr ggplot2 ggspatial raster rgeos sf smoothr sp stars units]; }; ggPMX = derive2 { name="ggPMX"; version="1.2.6"; sha256="191i2pa41441bdqb3j1hykvh0fqawrsydnpqbzx8z6f71461dzsw"; depends=[assertthat checkmate data_table dplyr GGally ggplot2 gtable knitr magrittr purrr R6 readr rlang rmarkdown scales stringr tibble tidyr yaml zoo]; }; @@ -10078,6 +10091,7 @@ in with self; { ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.3"; sha256="0hi9lz121ya1l2lbm7rqlxg6fs6bvxck396dngnidrhl5fvqb41b"; depends=[ggplot2 reshape2]; }; + ggcorset = derive2 { name="ggcorset"; version="0.1.0"; sha256="19x9qpl2zs0763q9lrsrcl589fh167hz3i19fyf505naanmn37kb"; depends=[dplyr gghalves ggplot2 ggstance]; }; ggdag = derive2 { name="ggdag"; version="0.2.4"; sha256="18085dxp9fv1l192mgadwlsa114fj370pd8r98q3g5pd1ppw8bip"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; ggdemetra = derive2 { name="ggdemetra"; version="0.2.2"; sha256="1j0nwmv2acyrkpn230jj6yf5nnl40kpqdqaglrnrfqw5rp357krp"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; @@ -10098,7 +10112,7 @@ in with self; { ggforce = derive2 { name="ggforce"; version="0.3.3"; sha256="0bwzjbjl678xvc2ihm80dwn9pidwafqjdab3k299csys16s3na1a"; depends=[ggplot2 gtable MASS polyclip Rcpp RcppEigen rlang scales tidyselect tweenr withr]; }; ggformula = derive2 { name="ggformula"; version="0.10.1"; sha256="1ph5jd8svk8hmshi894vmmpq3zwgdmf4yn3gmdlkad68z8jynhsp"; depends=[ggforce ggplot2 ggridges ggstance labelled magrittr mosaicCore rlang scales stringr tibble]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.14"; sha256="038m74azpy43869ax1yi6wxbl1kr59iaxl8raiikjg749vcx6njw"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; }; - ggfun = derive2 { name="ggfun"; version="0.0.5"; sha256="10spayf5jzmizhs6aassjplrjr9mr6bcww30pyxzyb1djfl41qxi"; depends=[ggplot2 rlang]; }; + ggfun = derive2 { name="ggfun"; version="0.0.6"; sha256="06si42b60hp8wprs5nbks93qlb9s269k9kw7akcirizwc399x62r"; depends=[ggplot2 rlang]; }; ggfx = derive2 { name="ggfx"; version="1.0.0"; sha256="1q9ppp88yj6lplj7wxnf18aa7a8f5iz35765bdfhsrkdxlrkny7h"; depends=[ggplot2 gtable magick ragg rlang]; }; gggap = derive2 { name="gggap"; version="1.0.1"; sha256="1iidxm7qcrg0isw2q27cmjbfb3pkfj5jcg1nj8lgy6xmydw3vrw3"; depends=[cowplot ggplot2]; }; gggenes = derive2 { name="gggenes"; version="0.4.1"; sha256="1s4knz2g06w46jbi037l9ii0kkxvl7gnljp54s4z36hnswsrv8jk"; depends=[ggfittext ggplot2 rlang]; }; @@ -10122,13 +10136,13 @@ in with self; { ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; gglm = derive2 { name="gglm"; version="0.1.0"; sha256="12bqqh9614v0cv45czqh6w0in4hbhwmicvcw8l07zdhrn9aq7y9m"; depends=[ggplot2 patchwork rlang]; }; - gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; }; ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; ggmatplot = derive2 { name="ggmatplot"; version="0.1.1"; sha256="07di071iv2zab8w5l60llb05h9lbrmaam65z5wiy0g27swvnv6i1"; depends=[ggplot2]; }; ggmcmc = derive2 { name="ggmcmc"; version="1.5.1.1"; sha256="1y6ya2qihm8h6ds84akhmsxn9c8jriw03wakaqzsmi21agz87n21"; depends=[dplyr GGally ggplot2 tidyr]; }; + ggmice = derive2 { name="ggmice"; version="0.0.1"; sha256="06asqqzjnlx8hl63nfl83l8x1bga59vhn4x2sl8j0v6bmcj0fnqm"; depends=[dplyr ggplot2 magrittr mice purrr rlang stringr tidyr]; }; ggmix = derive2 { name="ggmix"; version="0.0.2"; sha256="158pzmr4vmy2qxmp3nrabjgkg11mrdvl1skzxgwida2is900f7gf"; depends=[glmnet MASS Matrix]; }; ggmosaic = derive2 { name="ggmosaic"; version="0.3.3"; sha256="1zm1zfbd0qk6icw65m9hz1hgyqj632ibq3qilidvx5jy7jh8nbpy"; depends=[dplyr ggplot2 ggrepel plotly productplots purrr rlang scales tidyr]; }; ggmotif = derive2 { name="ggmotif"; version="0.1.1"; sha256="1ny4kladbhidnx3z6sz3vcjlxkhvr9qci1g9b01jrznc8sg1c050"; depends=[ape aplot dplyr ggplot2 ggtree magrittr stringr tidyverse XML]; }; @@ -10136,7 +10150,7 @@ in with self; { ggmuller = derive2 { name="ggmuller"; version="0.5.4"; sha256="0y7bm9fm5i8acpy6fa903ca2r9yasky7kg2hicm4xz5ni09jm20x"; depends=[ape dplyr ggplot2]; }; ggmulti = derive2 { name="ggmulti"; version="1.0.4"; sha256="07kqhfpg7alayfq4a86wq18jzdcmxd99607w1amzidizmwgd54d8"; depends=[dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.10"; sha256="0gqdgy5yh700dg0f7xb80hczlnqfisn8l55j7amd1n7fp2x5sr8v"; depends=[ggplot2 ggrepel igraph network sna]; }; - ggnewscale = derive2 { name="ggnewscale"; version="0.4.6"; sha256="08xqhv6y9m9f2p8q3h0dh7mbpqg3r2i590x2983k69plfa5jxzv3"; depends=[ggplot2]; }; + ggnewscale = derive2 { name="ggnewscale"; version="0.4.7"; sha256="108a7y6sqqvzyfk247lbmnacfpwdl405rf1b3fa62cgx8ycsq4kb"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; ggokabeito = derive2 { name="ggokabeito"; version="0.1.0"; sha256="07lbzq87zl2yswidp0f90l8szl7y4wwn8psgacyl90wn2gd9mdcp"; depends=[ggplot2]; }; @@ -10173,7 +10187,7 @@ in with self; { ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.3"; sha256="0bmlqy1p6rac90af97ffpdi6php7dblx66l2hcm8ljidgyqzmspm"; depends=[ggplot2 plyr scales withr]; }; ggrisk = derive2 { name="ggrisk"; version="1.3"; sha256="02df3gcviax747d33v30m97jsazj7zdpjnhypfy38cg70yxidwg9"; depends=[cutoff do egg ggplot2 nomogramFormula reshape2 rms set survival]; }; - ggroups = derive2 { name="ggroups"; version="2.1.1"; sha256="0qzz3klwvzz5040d5hhzgz7cx7s21m2pdxh8224h7knghrm7d5y6"; depends=[]; }; + ggroups = derive2 { name="ggroups"; version="2.1.2"; sha256="0fb6awfm4vn67pgmz50fljvp9mfxx1q29pirgv04dya8751srxgi"; depends=[]; }; ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; }; ggseg = derive2 { name="ggseg"; version="1.6.4"; sha256="0x6vjsdkkrdnxi4a4dzcbadpqmmn0058i980s0a8456hwqlld7s5"; depends=[dplyr ggplot2 sf tidyr vctrs]; }; @@ -10217,7 +10231,7 @@ in with self; { gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; gif = derive2 { name="gif"; version="0.1.0"; sha256="119d7q9xs6xpncv1r2w008kld9z07ckyj1kja9b8n2lnlb8532pk"; depends=[MASS Matrix Rcpp RcppEigen]; }; - gifski = derive2 { name="gifski"; version="1.4.3-1"; sha256="16nlg4d4cqbrh6jvi0nb7hnhmyj1wgzwjyjja135y1kh9jrd4al2"; depends=[]; }; + gifski = derive2 { name="gifski"; version="1.6.6-1"; sha256="1qfhg19iclsdyb583sf25fh7am951c7q53z1s64r3vv1ivdnn18k"; depends=[]; }; gifti = derive2 { name="gifti"; version="0.8.0"; sha256="1gb3x4rln9vayjd9fgzb434mm3dwcqgrvlv6rmh4b39mjfm73sly"; depends=[base64enc R_utils xml2]; }; giftwrap = derive2 { name="giftwrap"; version="0.0.4"; sha256="1zsw529h69x9yaq2csfws4iqn3mm39z34kwzj0b2y850wzbn2dvp"; depends=[namespace processx readr tibble]; }; gigg = derive2 { name="gigg"; version="0.2.1"; sha256="0qb8w455a8wxc5ljmydq4xag2kbj5yk06an0pd9hd4k48wssg8la"; depends=[BH Rcpp RcppArmadillo]; }; @@ -10228,9 +10242,9 @@ in with self; { giphyr = derive2 { name="giphyr"; version="0.2.0"; sha256="0273f7lama8bhaalafs66m6ksp32vx0j6rmh1qr4484i7wkmdfqn"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; }; giscoR = derive2 { name="giscoR"; version="0.3.1"; sha256="1120ixjcvzm3yk8mfradvp469abpxgna4nwk1v1fa14gkyf6kqzs"; depends=[countrycode geojsonsf rappdirs sf]; }; gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; - git2r = derive2 { name="git2r"; version="0.29.0"; sha256="13nlrhma6kavvhranb43w3003vadfkyrn2f4l3r63iqavj0s3xzq"; depends=[]; }; - git2rdata = derive2 { name="git2rdata"; version="0.3.1"; sha256="0nvx6lfp66l44n3xwkj5biirrzwvl52dssfx8jysqjl1kgfrwwh3"; depends=[assertthat git2r yaml]; }; - git4r = derive2 { name="git4r"; version="0.1.1"; sha256="1z00m1l5gd1r03pnr7jcdzfba3vcak84xv3fbwhw8zcfjghsp3rc"; depends=[diffr git2r]; }; + git2r = derive2 { name="git2r"; version="0.30.1"; sha256="0h58djc9cim8iskkyhdxllbpf6ycl5zj9g4fp70k57k5qzfi7nc5"; depends=[]; }; + git2rdata = derive2 { name="git2rdata"; version="0.4.0"; sha256="05hr4ks2rdnjhbd5v865r9h6gnw149n5h6nwilw5xfx00gj86b9d"; depends=[assertthat git2r yaml]; }; + git4r = derive2 { name="git4r"; version="0.1.2"; sha256="1kfx95y0kp656y8306jz75q4zmd8dswfmrb5jr0wihlhnz182g2h"; depends=[diffr git2r]; }; gitcreds = derive2 { name="gitcreds"; version="0.1.1"; sha256="1snzn7nxy0rwz0bzjsg6k04c0n811dgn8gn9cmn2v78aj57ayjmi"; depends=[]; }; gitdown = derive2 { name="gitdown"; version="0.1.6"; sha256="16g4kngal0w0vjrympxmnq16rpxks4wbj35aasvr3p2srgqn86by"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; @@ -10257,7 +10271,7 @@ in with self; { gld = derive2 { name="gld"; version="2.6.4"; sha256="08rkv7g6ci969vh9fbyg3lrpfmjhbiwzdhcjs9j6s9bf3gpdmdhd"; depends=[e1071 lmom]; }; gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.12"; sha256="0aphdscj0s6kqxlkgqkw2d6snrylz6hiis6307pl8ldh7q5cvm33"; depends=[]; }; - glinvci = derive2 { name="glinvci"; version="1.1.17"; sha256="0rl7qka0pk57yxyh6rmkgf69czm1b6gz3v1fsm0qaf9dbqcnpnrm"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; + glinvci = derive2 { name="glinvci"; version="1.1.18"; sha256="0bsyiy3q86xbjgpka8j4fg55a0wjxm9p0vb2a1b88q8bx8zs7w4b"; depends=[ape BB lbfgsb3c numDeriv plyr Rcgmin rlang]; }; gllm = derive2 { name="gllm"; version="0.37"; sha256="169y3yz947d8qdphqv2a6yrdash6v2h9jfvj2fk7rcpmz0r45kl6"; depends=[]; }; gllvm = derive2 { name="gllvm"; version="1.3.1"; sha256="1im5q5137jf8cwpydy6p8lip9v43fvgb5hi11ff2wwhc9yw74gyd"; depends=[fishMod MASS Matrix mgcv mvabund RcppEigen statmod TMB]; }; glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; }; @@ -10271,14 +10285,14 @@ in with self; { glmertree = derive2 { name="glmertree"; version="0.2-0"; sha256="0lfn6dap38i6cnfy4gdap13aq81h9cm3bip7ci57q9br9b00x7ib"; depends=[Formula lme4 partykit]; }; glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; - glmm = derive2 { name="glmm"; version="1.4.2"; sha256="03jgj3ssza2j2cg6nl4pbbmj57s951mxbas32cg5789zh9hjbygg"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; + glmm = derive2 { name="glmm"; version="1.4.3"; sha256="08fry79s9nbcss6z5pbi7yjjdwyz6aq5xn89hzmpdiynid07x5si"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; glmm_hp = derive2 { name="glmm.hp"; version="0.0-2"; sha256="1fjhrfgpl0xf7v6zls8v1dqm0bqds96mkiqk27bx6iy6wmadlwgk"; depends=[ggplot2 lme4 MuMIn]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; glmmML = derive2 { name="glmmML"; version="1.1.1"; sha256="1m2dcw522nd78x7z7la7a4cii3030s0bl4sqxbvkxn1k15jf4pr5"; depends=[]; }; glmmPen = derive2 { name="glmmPen"; version="1.5.1.8"; sha256="04pxkhklyx26mngg7bwhlrqd3bh1ay1h5ddfacpg5jnigp2rlk84"; depends=[BH bigmemory ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen reshape2 rstan rstantools StanHeaders stringr]; }; glmmSeq = derive2 { name="glmmSeq"; version="0.1.0"; sha256="0mdcwh6vvh4pc64r4jl78dr6x8fwclbbx8s9kf2sj39mm7iqpkqz"; depends=[car gghalves ggplot2 ggpubr lme4 MASS pbapply pbmcapply plotly qvalue]; }; - glmmTMB = derive2 { name="glmmTMB"; version="1.1.2.3"; sha256="1yfwwz2dhd34vgagg8hi7irkqw8padavbc7337jdiwgk3w01wqsm"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; + glmmTMB = derive2 { name="glmmTMB"; version="1.1.3"; sha256="0xdjc3gx0cj098rrjzlsy9cccxzfvn029xh4ycpya4xjhxsykldr"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; glmnet = derive2 { name="glmnet"; version="4.1-3"; sha256="0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; @@ -10289,7 +10303,7 @@ in with self; { glmpathcr = derive2 { name="glmpathcr"; version="1.0.8"; sha256="00hbgp1kdbvihqvx03vv6gq32whrkcfq3n32bbj3cda85dnivlwq"; depends=[glmpath]; }; glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; glmtlp = derive2 { name="glmtlp"; version="2.0.1"; sha256="0ax3jhbib75gzp5a2y4nj80qss4qmn65rra8bsnkmwgcn4qg8xja"; depends=[doParallel foreach ggplot2]; }; - glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.2"; sha256="1f3kw9w5i8jd9j9xmdq9327dh77xichssw53nsayn9w41n9ky431"; depends=[numDeriv Rfast]; }; + glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.3"; sha256="0aci1wwhn0s6vsd23ljg8pq0845agv1rc5bk79nzkjyiq883r7c1"; depends=[Formula numDeriv Rfast]; }; glmtrans = derive2 { name="glmtrans"; version="2.0.0"; sha256="10d9z1rrjnxkw3nmim01ql5yfn1w62sncgclmprznr5kbna49yj3"; depends=[assertthat caret doParallel foreach formatR ggplot2 glmnet]; }; glmtree = derive2 { name="glmtree"; version="0.2"; sha256="07b7ma38r5cjv6c33q1n2f8xvzn3lj004i8v947pqdhg3fi9wlc6"; depends=[caret dplyr magrittr partykit]; }; glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; @@ -10302,6 +10316,7 @@ in with self; { globals = derive2 { name="globals"; version="0.14.0"; sha256="1wrjiiif6rpc268zz79pvpw33si6n6ffgxdnxmmcracwhb5vqg90"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; + glottospace = derive2 { name="glottospace"; version="0.0.111"; sha256="0826nx4555ign0yjhcq0s0g2c262bprl9z91v9bs3mc8d4f9x0g2"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; @@ -10323,8 +10338,8 @@ in with self; { gmm = derive2 { name="gmm"; version="1.6-6"; sha256="16vkb472bjlfccfpl94mz772nbyf76wkwb2shai18jja3fnj3cxi"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.6-4"; sha256="0vfhz5cpffcrmq011h7jvy1r6d5pbbpkxj8431bhj5x5h25x7sjn"; depends=[]; }; - gmpoly = derive2 { name="gmpoly"; version="1.0.0"; sha256="0nl5cbp6kk382nd1w7zpb571zyf4jark51xih34bnhy6kyq04xkw"; depends=[gmp mvp purrr]; }; + gmp = derive2 { name="gmp"; version="0.6-5"; sha256="0llyd1wx606vpgvv7d61m0fv2a5yxsmisd38fhzanbjl2wynzrwa"; depends=[]; }; + gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.2"; sha256="0z5abh0kw97y90nxkkxxg2xgv1avxijf71v88lwhy25jgv8r7b38"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="2.0.2"; sha256="0si4a4ds9804rssim7vljv3q7ny54kd1lf9sljisrfilnbj69qsy"; depends=[Brobdingnag gsl mvnfast pbapply]; }; @@ -10336,6 +10351,7 @@ in with self; { gnorm = derive2 { name="gnorm"; version="1.0.0"; sha256="17h43qwb07wk5hiif89k6dgn6bbdsqfy2jy3k5blbdhhp3b9jcqp"; depends=[]; }; gnrprod = derive2 { name="gnrprod"; version="1.0.0"; sha256="0ndrw2ym0f9m593q51lf069nf6fasrwb3psv1qr914jpm6vcp9di"; depends=[data_table]; }; gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; + go2bigq = derive2 { name="go2bigq"; version="1.0"; sha256="007sk6i10phxfmrgn03pa43ixfp1v27nxyvgmhzwrj5l9b532f0d"; depends=[gmp Rmpfr]; }; goeveg = derive2 { name="goeveg"; version="0.5.1"; sha256="1dg0aw3sfar706jyiy5m5qz3nzs6sy3ljs9jp0p65b0v01rw8sbs"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; @@ -10365,7 +10381,7 @@ in with self; { googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.3"; sha256="114yhhqjpg7khgq82y1qdpnm6pbqinlgwh5n1lx6fzsm1ajhl0kv"; depends=[cli googleAuthR magrittr]; }; googleTagManageR = derive2 { name="googleTagManageR"; version="0.1.6"; sha256="1y2avhgvzrpmpyx341di8ml2pdj10y8sdhn7zwjpxgzrxkmf4xxi"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; - googleVis = derive2 { name="googleVis"; version="0.6.11"; sha256="15vvk08fwqbik3dyq927ccdvmyi4zjc2sxpnpy2g2yysa5n0pjgq"; depends=[jsonlite]; }; + googleVis = derive2 { name="googleVis"; version="0.6.12"; sha256="1h06qxclyrga45k5w8yryk32bi16q4kzbgpzrn74xkrzg77jg24r"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; @@ -10382,7 +10398,7 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; - gpboost = derive2 { name="gpboost"; version="0.7.2"; sha256="05khnv1zfp0f8aj4ljkfrlwhqay565imr5ks636sgy6ivsb6c1w0"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="0.7.3.1"; sha256="0cnswydmsjdxxkkhcrjid77jd782xxi2nsf9qi5h5scjgvnwsicv"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.6"; sha256="17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"; depends=[askpass curl]; }; gpindex = derive2 { name="gpindex"; version="0.4.2"; sha256="1id5mmdmjw34y80cnjfxgldd83bzfifh0jk4ym4wp7h3dbpqr8n5"; depends=[]; }; @@ -10406,7 +10422,7 @@ in with self; { grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; gradeR = derive2 { name="gradeR"; version="1.0.10"; sha256="1ngfrminhsk3155da0vjmvrk66nbnak8p1ns20cw32qayq6wyrr2"; depends=[callr jsonlite testthat]; }; gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; - grafify = derive2 { name="grafify"; version="2.1.0"; sha256="0l5i27ifm2xxg7vs2wkcwqm60wgvxc397x1wg654qjvh1ggpd1qn"; depends=[broom_mixed car emmeans ggplot2 Hmisc lme4 lmerTest magrittr purrr tidyr]; }; + grafify = derive2 { name="grafify"; version="2.2.0"; sha256="0c53n92s0gim1ir561jniajy2gb1xdawx873vi87fr98mc0r2rh4"; depends=[car emmeans ggplot2 Hmisc lme4 lmerTest magrittr purrr tidyr]; }; grainchanger = derive2 { name="grainchanger"; version="0.3.2"; sha256="1anq9gmbf9cjh6f9q2h7f65j220f56rmb59zhp5j2d26bs7dbnz8"; depends=[checkmate furrr raster sf usethis]; }; grainscape = derive2 { name="grainscape"; version="0.4.3"; sha256="0mc9mgc70ysqal8pjslmr7dzig3d08jcdpba348hmgyh0w9b6s07"; depends=[ggplot2 igraph raster Rcpp rgdal sp]; }; gramEvol = derive2 { name="gramEvol"; version="2.1-4"; sha256="1am5nlnyawi4lybi10ag4fdhddvbwsdzrmr6f66bzspdpl4s26g9"; depends=[]; }; @@ -10431,7 +10447,7 @@ in with self; { graphsim = derive2 { name="graphsim"; version="1.0.2"; sha256="09is0yr17vxr08zb3p240n0aapm63418dzx4ilwq08y8050jqqr7"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; - gratia = derive2 { name="gratia"; version="0.7.0"; sha256="02yg6ab23yvkx0yshybayal6dfjvrq9hligfg5rj0mlvl7dnz3ad"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; + gratia = derive2 { name="gratia"; version="0.7.2"; sha256="1qj6jnxm12x686qm88vz96y8q5lv8hvwlll6i398agyqaz02nppj"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; gratis = derive2 { name="gratis"; version="1.0.0"; sha256="0dkgbha7ijwvddqxcnfn9gfz29kjzykifbr252qp3qjzkdqw50hi"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; grattan = derive2 { name="grattan"; version="1.9.0.10"; sha256="09724322yrylq9i38j4vb41p4vvfz14h40gjb7r60kkybzpjvkwn"; depends=[assertthat checkmate data_table fastmatch forecast fy hutils hutilscpp ineq magrittr Rcpp zoo]; }; @@ -10439,31 +10455,30 @@ in with self; { gravity = derive2 { name="gravity"; version="1.0"; sha256="1xbdw1gl3vsjfg90bb1pqy4jhp2wd4ss96z2xd3pbgyanf6fkdkf"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; }; greatR = derive2 { name="greatR"; version="0.1.0"; sha256="1h1qrgpydh3rqrccr05rp2y2n05k84gjmnp2bj3ffdpflhhp0yiz"; depends=[cli cowplot data_table dplyr ggplot2 ggpubr ggrepel magrittr rlang Rtsne scales stringr viridis]; }; grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; - greed = derive2 { name="greed"; version="0.5.1"; sha256="1g33wzcld9gh4x7nhbfb022xjrn2lz8dwf4aqir8ymm0sr6cln87"; depends=[cba future GGally ggplot2 ggpubr listenv Matrix Rcpp RcppArmadillo RSpectra]; }; + greed = derive2 { name="greed"; version="0.6.0"; sha256="0r580lj9v1g774kq0zaw7kfnfzg0qvi2m17ndqlraiipzjjvhiq7"; depends=[cba cli future ggplot2 gridExtra gtable listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; greeks = derive2 { name="greeks"; version="0.5.0"; sha256="0nwpw9iqczm4i2asqsh679s5pd2ia7ifdjaz6mdml1gdjkp85zlk"; depends=[dqrng magrittr Rcpp]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; - gremes = derive2 { name="gremes"; version="0.1.0"; sha256="1ih5303sis2icic1q13gh6h3qbb1fzw0j7pdla75csiffjc77hw7"; depends=[abind copula gRbase gRim igraph mev mvtnorm quadprog]; }; gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; }; greport = derive2 { name="greport"; version="0.7-2"; sha256="1p5x4sar88ss8n1m0c73arac10mq4ircjad38kbin6l0nk9z1mh2"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; - greta = derive2 { name="greta"; version="0.3.1"; sha256="0wy1619drj8ir6r44xcliiirgibksd80gmjx21am2h580k0x0xq2"; depends=[coda future progress R6 reticulate tensorflow]; }; + greta = derive2 { name="greta"; version="0.4.2"; sha256="1wfb00klhlwmw8c9j3x7m1ip5f56w5xaf1837495xckbzxl6qv54"; depends=[abind callr cli coda future glue parallelly progress R6 reticulate tensorflow yesno]; }; gretel = derive2 { name="gretel"; version="0.0.1"; sha256="1yyj4aing56f2vy0gshxwb623g9idg8k4701v3s53lqn4m2ybazk"; depends=[Rcpp ResistorArray]; }; gretlR = derive2 { name="gretlR"; version="0.1.0"; sha256="0lpznicpjlvp5kkhmlfr4as7px545k416i3f54900jnc7xa7fm8p"; depends=[knitr]; }; grex = derive2 { name="grex"; version="1.9"; sha256="0s6nan76rrmh3yhgvzb7pqdrzx2w9px8ay4v9yiib4bamy9wmhpb"; depends=[]; }; - greybox = derive2 { name="greybox"; version="1.0.4"; sha256="03k8g5wjn3jvw037ibavppbghc9zbj70w8q45rrv02gy5n5ph5c4"; depends=[generics lamW nloptr pracma Rcpp statmod texreg zoo]; }; + greybox = derive2 { name="greybox"; version="1.0.5"; sha256="1bq94b5c8l7dhdkmr9makmc19541bdq5mgwlsfsagc4rnf5j5kfv"; depends=[generics nloptr pracma Rcpp statmod texreg zoo]; }; greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; - grf = derive2 { name="grf"; version="2.0.2"; sha256="01dmakzwgpkjqqhfvvgj356zklmqkhfprczb1xg2saknayh22gq4"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; + grf = derive2 { name="grf"; version="2.1.0"; sha256="06dvcv55bhly1y8a9jkwy3srl1ya7ykqqbxy8l9qyxj7h6fgx902"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridBezier = derive2 { name="gridBezier"; version="1.1-1"; sha256="1n5d6svxblcxpzf79px0qjxsydpwjpnfcagnwk35ljinyd0wv68z"; depends=[]; }; gridDebug = derive2 { name="gridDebug"; version="0.5-1"; sha256="1x1bbyfbyyn13sw5pvnzns6mq57fyq2fywj8hx5k9rhqclzjqxyr"; depends=[graph gridGraphviz gridSVG]; }; gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; - gridGeometry = derive2 { name="gridGeometry"; version="0.2-0"; sha256="0y7y1ld03cqpibmjssid6n3n8gf98hi9ngcfbkh6acyzck812bc7"; depends=[polyclip]; }; + gridGeometry = derive2 { name="gridGeometry"; version="0.3-0"; sha256="0x2b993ffqp8hk0sml6yhmpzy89inv4cjr7f2j60m5jlk55zvx55"; depends=[polyclip]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.5-1"; sha256="12yswy02j3h5wir7m5jnkhpjmb0sa4snn61vjd68i49qwsa6w219"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-4"; sha256="1jspjn56yrkx98hhs98npzm0k0kwpv8x1hg40kphx5ikhvincxmr"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="0.5.1"; sha256="1yql0kwp7rs95w1iqh5qwd5s9bfpzrqqrr2z84z7l7n6yxkgfs9w"; depends=[glue memoise png rlang sf]; }; + gridpattern = derive2 { name="gridpattern"; version="0.5.3"; sha256="1jd3959dccz79qadlf6adn6ynl6bssb2p955ykwz2yjzjklpc8ip"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridtext = derive2 { name="gridtext"; version="0.1.4"; sha256="131kw7nkfwksviwfifd2kk7lyvhxzzzv1nnj8rahkr3dik3akk61"; depends=[jpeg markdown png Rcpp RCurl rlang stringr xml2]; }; gripp = derive2 { name="gripp"; version="0.2.20"; sha256="0rshipm8rdynl19a4dsvvvlhkd0n4vjfkidwnv5iilc5ini7c4qr"; depends=[GA GenSA usethis]; }; @@ -10509,7 +10524,7 @@ in with self; { gscounts = derive2 { name="gscounts"; version="0.1-4"; sha256="1wcna4bcm38ivmys5hv30b72bvn0ja0n30zhwns94n4v2z1d24k4"; depends=[Rcpp]; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; gsheet = derive2 { name="gsheet"; version="0.4.5"; sha256="0b8q44cqkjfy6vnffm94czq4ag8xfbxik52026ahq95kcf9v2j91"; depends=[httr stringr]; }; - gsignal = derive2 { name="gsignal"; version="0.3-2"; sha256="1yw3srky82wqwvbjdfdd718ay965qnrwq7lnflzdg1j0f7nxj6iw"; depends=[pracma Rcpp]; }; + gsignal = derive2 { name="gsignal"; version="0.3-4"; sha256="0sn3v1v800bf9jg2daq4i8hmlabqbqqr5298s2kzdgzvn4hgv72x"; depends=[pracma Rcpp]; }; gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; gsl = derive2 { name="gsl"; version="2.1-7.1"; sha256="118rj9kjx9rzlynvhrly19qz3yxg8jzws35971ssgzrp5lwd367f"; depends=[]; }; gslnls = derive2 { name="gslnls"; version="1.1.1"; sha256="0mgqqw7sicwqvflyq9pdq6jf367ha9f29ik5kbic8zkg3s4xnd55"; depends=[Matrix]; }; @@ -10519,7 +10534,7 @@ in with self; { gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; }; gss = derive2 { name="gss"; version="2.2-3"; sha256="0jr45lkpcndg5nynjsfnxn1wwkh4gkhsgv4hlvw6jn2frw0n8c14"; depends=[]; }; gstar = derive2 { name="gstar"; version="0.1.0"; sha256="1582f7jcphb32j3wdc345qa5sgm2xyimlc6r5r5jay7ca5ll8c98"; depends=[dplyr ggplot2 reshape2 xts zoo]; }; - gstat = derive2 { name="gstat"; version="2.0-8"; sha256="1s380qbvygccjhwpk4bmhdhdsbz0h8f6b9ghdalpk4x36n19xjsp"; depends=[FNN lattice sp spacetime zoo]; }; + gstat = derive2 { name="gstat"; version="2.0-9"; sha256="19m4zcj1qvg6gs8yjr5ijvd6rrv4av5yp5rmhnb88f0m5qn06b0j"; depends=[FNN lattice sp spacetime zoo]; }; gstsm = derive2 { name="gstsm"; version="0.0.1"; sha256="14vdgrxxgz18l2k9qi4dg2v6xp3cbc3171iayfzyg4d8ay0094dh"; depends=[digest]; }; gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-6"; sha256="1sqxxbghsii5lph4r9j6w752zd95xxi2hwfbz6d7jxsplwyyfz0l"; depends=[]; }; @@ -10530,7 +10545,7 @@ in with self; { gtable = derive2 { name="gtable"; version="0.3.0"; sha256="1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x"; depends=[]; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; - gtfs2gps = derive2 { name="gtfs2gps"; version="2.0-1"; sha256="10v8b7qs0s5w4api08acjgll8zs1frz4ar02g68gmipwks5d6mvg"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr Rcpp readr sf sfheaders terra units]; }; + gtfs2gps = derive2 { name="gtfs2gps"; version="2.0-2"; sha256="1ypmvn1i10rqbcl8nwph44dqnmszj9drfivpj1nf8clszfhqazaw"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr Rcpp readr sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; gtfstools = derive2 { name="gtfstools"; version="1.0.0"; sha256="0qwpnhjl80g0h0samsh8hs3df85ax329aaaxgjzn5b8h6xi31p6z"; depends=[checkmate cpp11 data_table gtfsio sf sfheaders units]; }; @@ -10556,15 +10571,15 @@ in with self; { gwaRs = derive2 { name="gwaRs"; version="0.3.0"; sha256="1mjwsf1sbrd88psiz6f74zddv1wvhpxk5nxbfjpdrxs74rkc36fs"; depends=[data_table dplyr ggplot2 ggrepel RColorBrewer scales tidyr]; }; gwasforest = derive2 { name="gwasforest"; version="1.0.0"; sha256="122fg4pc409lvw4yvrc8ijm6d6j29b4aacd319a16caxkkydgwlb"; depends=[colorspace data_table dplyr ggplot2 ggrepel glue]; }; gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.12"; sha256="0pn7mdip361s2l3nqmjl0zqmr0g5406cfr1v5l20m2gkacxqfds6"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools]; }; - gwavr = derive2 { name="gwavr"; version="0.1.0"; sha256="04myyx5jll0xiarsdj513rlqg5hci1204kyzfknff874l2qxm2j7"; depends=[dplyr httr jsonlite leaflet leaflet_extras magrittr miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets tidyr units]; }; + gwavr = derive2 { name="gwavr"; version="0.2.0"; sha256="0wlbyl3r4sxcjyfbymcrynkcaqmqivl4qhh14nxjrg8lji47lad6"; depends=[dplyr elevatr httr jsonlite leaflet leaflet_extras magrittr miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets terra tidyr units whitebox]; }; gwer = derive2 { name="gwer"; version="3.0"; sha256="0jiq5v37mbn6y7vl5gs8qahb796jrfqj0m54sd38vim8yhhjwfy8"; depends=[assertthat glogis GWmodel maptools Matrix sp spData spdep spgwr]; }; gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.3"; sha256="0d8skx6rxas5qvhg7ykhymrzd6dawj45421vr66r4wi4hbdfjbzx"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; - gyro = derive2 { name="gyro"; version="0.1.0"; sha256="0knghb9hb9f1vli860qcaklb4d6pfmzyyx5ffyld7mimwmcwxyns"; depends=[clipr cxhull Morpho purrr rgl rstudioapi Rvcg]; }; - h2o = derive2 { name="h2o"; version="3.36.0.3"; sha256="0jn1nkh5vgcx6dqzja64fr3qlpn34r7ajgnivqdfqkcjhbj6j8qn"; depends=[jsonlite RCurl]; }; + gyro = derive2 { name="gyro"; version="0.2.0"; sha256="14x95hmv1k90xr2wgd2d3lwp87m7kq0k6j7qcp322iy1044mq25m"; depends=[clipr cxhull Morpho purrr rgl rstudioapi Rvcg]; }; + h2o = derive2 { name="h2o"; version="3.36.0.4"; sha256="0510yi5d9ziz0ylg33gxr0wlka7fibr7fijas28dhmksvfj7hc6k"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; h3jsr = derive2 { name="h3jsr"; version="1.2.3"; sha256="0amj7ks83zisy18fgnsy6zx4rg88ldyr0vhanh96dw3fbhhdh7kc"; depends=[geojsonsf sf tidyr V8]; }; hBayesDM = derive2 { name="hBayesDM"; version="1.1.1"; sha256="16ilkmhyb7lgfd8s2qhjg952gfwkmfg154w4nw306j988a2ivc6h"; depends=[BH data_table ggplot2 loo Rcpp RcppEigen rstan StanHeaders]; }; @@ -10579,7 +10594,7 @@ in with self; { hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; hadron = derive2 { name="hadron"; version="3.1.2"; sha256="04qd3lb6im5shf24ss88jkskab1rwn7m2d94x0ybbmfcg3l5dhm0"; depends=[abind boot dplyr R6 Rcpp stringr]; }; hagis = derive2 { name="hagis"; version="3.1.3"; sha256="1x2vnym7da8kbj3ifi09z9dlqgprh73n03535gankqzd6pd7n1k4"; depends=[data_table ggplot2 pander]; }; - hakaiApi = derive2 { name="hakaiApi"; version="1.0.0"; sha256="0wk0qmg2g1hj6bsvhr5xys02l32adn1qypv8rdma643qfvlcp46c"; depends=[httr R6 readr tibble]; }; + hakaiApi = derive2 { name="hakaiApi"; version="1.0.1"; sha256="1587rj6k648w653hwljrvvfi5rmi7ar6rh3p3yi6f08x76nl9017"; depends=[dplyr httr R6 readr tibble]; }; hal9001 = derive2 { name="hal9001"; version="0.4.3"; sha256="132qnrk6rm2qc5gw17iw61plx1ghnyzi7km8bp36vnqn19x9wj7j"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; haldensify = derive2 { name="haldensify"; version="0.2.3"; sha256="071lgx6j92n40bjlrp3khmnavvkla371rkm1ssx20ig5pkay23pw"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; @@ -10603,7 +10618,7 @@ in with self; { harmony = derive2 { name="harmony"; version="0.1.0"; sha256="0jkj9y4j6ja2d6y5j0akmkkgpppprk65i6bwwhs163g918i8qng0"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; - hash = derive2 { name="hash"; version="2.2.6.1"; sha256="0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056"; depends=[]; }; + hash = derive2 { name="hash"; version="2.2.6.2"; sha256="17scs675a86c34hjbxmwi8kny4yyv97x3515s449zafj2i0ad8vm"; depends=[]; }; hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; hashr = derive2 { name="hashr"; version="0.1.4"; sha256="10rvq4rvg7fds2ylh21lri4wlvj870bncqq7kma7rf89rg5x1jz6"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.2.0"; sha256="1ni4wzj8g6qmpgz1xj62vawkcpm3jr4jqqr1xaxlh5nzbj9fn57h"; depends=[graph Rgraphviz]; }; @@ -10674,7 +10689,7 @@ in with self; { hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; }; hermiter = derive2 { name="hermiter"; version="2.1.0"; sha256="1z9zrmyxx7dgsi0zblp15saw1iz79sc2r9zyirdzqmz010rnm19y"; depends=[BH Rcpp]; }; hero = derive2 { name="hero"; version="0.4.7"; sha256="129v2pjbxm5aalr5lfx0kh20rhwksnb80pc459pxg0xkwxvy1l3d"; depends=[fields Matrix optimx pbapply rgeos sp]; }; - hesim = derive2 { name="hesim"; version="0.5.1"; sha256="0w79ka88bafkcs7bjsyl7z2v44cd4xjv3xqyk764jamzfcfhanzq"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; + hesim = derive2 { name="hesim"; version="0.5.2"; sha256="0lhfmqq7s45mfcc21hkdz2hmfpai4jgqs0rx0c55l3zgscdyr9wv"; depends=[data_table flexsurv ggplot2 MASS msm R6 Rcpp RcppArmadillo survival]; }; hetGP = derive2 { name="hetGP"; version="1.1.4"; sha256="1nm4kkg0jwlp21flviiw187jih4y1s6lqn3j0f2s1h81rh1vvvzf"; depends=[DiceDesign MASS Rcpp]; }; hetsurr = derive2 { name="hetsurr"; version="1.0"; sha256="1086lqxg6s5a0qxmd29bp3ninr4jzfdp3m6fsn9sfl7bagvrs5wy"; depends=[Rsurrogate]; }; hett = derive2 { name="hett"; version="0.3-3"; sha256="0i7q28nc67m62vi1ipfg035yqjh691fb1mp33dp1b68g5wjysphh"; depends=[lattice MASS]; }; @@ -10692,8 +10707,9 @@ in with self; { hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; hglm = derive2 { name="hglm"; version="2.2-1"; sha256="1lyxkvqzfll1qrz5c2km9ikhq0dm63x39by4vc1nmkd24yza93nc"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-1"; sha256="0mw1s0kahsh9jmwkxysfy5f7vbld7mpzmdnnww6im5h21jhnczx2"; depends=[MASS Matrix sp]; }; - hgm = derive2 { name="hgm"; version="1.18"; sha256="0d0s4hkn46cg85wl7nmjn707iw38kjs69p6xz33pzc1yf51l8z7w"; depends=[deSolve]; }; - hgutils = derive2 { name="hgutils"; version="0.2.7"; sha256="1svxhz80h84wn1fj58p8g3rp553ima1wfdbbkm2cqnihwjxhha62"; depends=[crayon dplyr limSolve magrittr stringr]; }; + hgm = derive2 { name="hgm"; version="1.20"; sha256="0sfyq81r4yrdw8508jsplkxb8kj1jy8dx9v3h1fvmwx3frrh3vm6"; depends=[deSolve]; }; + hgnc = derive2 { name="hgnc"; version="0.1.0"; sha256="1gxa7i8q52c93mdmxrkwdz82n6jrmr52hw6jpvymz9h5h44pqanb"; depends=[dplyr hms httr jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble]; }; + hgutils = derive2 { name="hgutils"; version="0.2.11"; sha256="0l288fqymh2i4dngy909gi8b4c9hdis02gqwyyvy6r8xzisk4m44"; depends=[crayon dplyr limSolve lubridate magrittr stringr usethis]; }; hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; @@ -10790,6 +10806,7 @@ in with self; { hotspots = derive2 { name="hotspots"; version="1.0.3"; sha256="12v88k3yz1bsxx9p5dx8y54ccqcglwknm2jr7ybygdj2yasjr5l0"; depends=[ineq lattice]; }; housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; }; hover = derive2 { name="hover"; version="0.1.1"; sha256="09lpga8a87h6fyg0j3av4xjna300ifsx2ygzwsnvh2l1d70fwf8m"; depends=[htmltools shiny]; }; + howManyImputations = derive2 { name="howManyImputations"; version="0.2.2"; sha256="10qci2ja1b2wivpvl9xqiv0ksvghdj12zjn2q9nsxszvr809hcpx"; depends=[mice]; }; howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; hpa = derive2 { name="hpa"; version="1.2.1"; sha256="0z60j7ydbifwsp2flksgswnw3zrr0gamkng4nrbbsz7zxmagsxml"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; @@ -10811,7 +10828,7 @@ in with self; { hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; - hsrecombi = derive2 { name="hsrecombi"; version="0.3.4"; sha256="0ca6672px0y5cibv9hk4hc638rp4d3bhbw0qn81irwwk84yacspv"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; + hsrecombi = derive2 { name="hsrecombi"; version="0.4.2"; sha256="1d2dah63gl8gfzjz9rq9d3d62fqc3q6p0yc81rbx543220q3ll7v"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; htestClust = derive2 { name="htestClust"; version="0.2.1"; sha256="01gcg2ad1fprn6fwzwjcjpvirz9dvrlns9l8rhf5h9j17p6vb1d1"; depends=[bootstrap MASS]; }; @@ -10827,7 +10844,7 @@ in with self; { htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; htsr = derive2 { name="htsr"; version="1.1.3"; sha256="01id95530g80hn4l94ngi7562iy52pc63s4i7a9glc4h6w3hwl15"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; - httk = derive2 { name="httk"; version="2.0.4"; sha256="0akddji209hw82lcvd7k63k4lzcx3jazycw2p1388b36nzm40w79"; depends=[data_table deSolve magrittr msm mvtnorm purrr survey truncnorm]; }; + httk = derive2 { name="httk"; version="2.1.0"; sha256="0ygx5fvb4pcqmqw89sf0z6ag2k2nkci2glv46dbsyhn85xsxw8ia"; depends=[data_table deSolve magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.3.0"; sha256="0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr"; depends=[]; }; @@ -10839,9 +10856,10 @@ in with self; { httpuv = derive2 { name="httpuv"; version="1.6.5"; sha256="0mlilxh2mlrsbbrncla2rg02crr8nnajv649d8whx7ayr8lkdxpm"; depends=[later promises R6 Rcpp]; }; httr = derive2 { name="httr"; version="1.4.2"; sha256="1y8y1g1dkgv9jafrk1kj6pzxpw95c0rr9lplblfq2byrs1pfsas6"; depends=[curl jsonlite mime openssl R6]; }; httr2 = derive2 { name="httr2"; version="0.1.1"; sha256="1lkl73wignikdldxbmb8iic55x2l9h3jh2936db4g8jp8xkn3jhd"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; + hudr = derive2 { name="hudr"; version="1.0.0"; sha256="1ckqydfadldp5l685cfnjwfzyrh7ps6v59ra2q3i22jkvqnl06hb"; depends=[data_table httr janitor magrittr]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.3.5"; sha256="1sl457a1lndrx98y2j9a2smanawx2iqlhl82iand0g3p5xp8ch4j"; depends=[igraph MASS Matrix Rcpp RcppEigen]; }; - huito = derive2 { name="huito"; version="0.1.2"; sha256="0pws7si5x3vxqs3lc5pj1i1za1psq85l8l7xhrvasn1zzfgim2q4"; depends=[cowplot dplyr ggplot2 magick pdftools purrr qrcode showtext sysfonts tibble tidyr]; }; + huito = derive2 { name="huito"; version="0.1.3"; sha256="1wl9j02yf0ybw18id116701vhiyz2l4b3nlwpdkd0hqf841d04va"; depends=[cowplot dplyr ggplot2 magick pdftools purrr qrcode showtext sysfonts tibble tidyr]; }; humanFormat = derive2 { name="humanFormat"; version="1.0"; sha256="0zwjbl8s5dx5d57sfmq6myc6snximc56zl88h8y1s1jqphyn9sir"; depends=[testthat]; }; humaniformat = derive2 { name="humaniformat"; version="0.6.0"; sha256="0vaynjzz57pk4y1liag9lpn9jkag2033a6bkn28zzm7ndg3344l6"; depends=[Rcpp]; }; humanize = derive2 { name="humanize"; version="0.2.0"; sha256="0hhhd640n77s8xaa2gbd9fckdk2yjg68gdb7wjy56a2khzqfssxr"; depends=[assertthat glue lubridate]; }; @@ -10873,15 +10891,17 @@ in with self; { hydroTSM = derive2 { name="hydroTSM"; version="0.6-0"; sha256="1msavd2k05apsky88zkk1l3c6y3v95fwhmr6xmwsap70bj25krsv"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; }; hydroToolkit = derive2 { name="hydroToolkit"; version="0.1.0"; sha256="0bij4365hczvq17wj9hp0570v35m8ili11mp9dzfj3mvhhqrc9p4"; depends=[ggplot2 lubridate plotly readxl reshape2]; }; hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; - hydropeak = derive2 { name="hydropeak"; version="0.1.0"; sha256="1125q56c9nr49nkdf3q2pmi6gwvljdl145sjd8q24v9xi1n3r2g0"; depends=[]; }; + hydropeak = derive2 { name="hydropeak"; version="0.1.1"; sha256="0hddzvk8bjc31l3qh2pmhxwi8c1zgv3mycw5ki786x4kaym23qiq"; depends=[]; }; + hydroroute = derive2 { name="hydroroute"; version="0.1.1"; sha256="1a1vlbq5cnvhq5mjk9imvj869xmmhq814zvvfysw7jp63z5gvd47"; depends=[dplyr ggplot2 ggpmisc gridExtra hydropeak lubridate reshape2 scales]; }; hydroscoper = derive2 { name="hydroscoper"; version="1.4.1"; sha256="0jhvjmhcprjdjg6a54ic2f4kxfanpgwzzrkyyiggmj5jjg9yfhfw"; depends=[jsonlite pingr readr stringi stringr tibble]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.8"; sha256="1li66w7ak8hmvnmmb4q7nswd4zdd047mbrk4chd1bdya7dhhk644"; depends=[]; }; hydrotoolbox = derive2 { name="hydrotoolbox"; version="1.0.1"; sha256="0n2qfw1060szqllvc8vhhv8yy69dhs6m6hh5rnymfhm2wg8994a3"; depends=[ggplot2 lubridate magrittr plotly Rcpp readxl reshape2]; }; hyfo = derive2 { name="hyfo"; version="1.4.3"; sha256="012akh96qwafhgjba1gjwy0r14a6shcsk5b7n1hvw230s07zxd8r"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.1.1"; sha256="1xibiydfkhzsw0yqfc0xfzj4yz8xyxqlvnfpyxg33v5fwp9wap3v"; depends=[LaplacesDemon magicaxis MASS rgl]; }; - hyper2 = derive2 { name="hyper2"; version="2.0-1"; sha256="0xvmca46sbyajr2glzss59ahh053cg45cgx98zwzjpkqj5l430wh"; depends=[cubature disordR EMC magrittr mathjaxr partitions Rcpp]; }; + hyper2 = derive2 { name="hyper2"; version="2.0-3"; sha256="022a5bkmf6ygklz5w8k40my6g26m9lp28imnczic0g3bdi0jg2v0"; depends=[alabama calibrator cubature disordR magrittr mathjaxr partitions Rcpp]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.100.0"; sha256="0m0ws6lm5q1555n0qhixj4fqq4bbcf7i7d73pg85z74a3058gk5s"; depends=[dplyr ggplot2 lattice latticeExtra lazyeval testthat xml2]; }; + hyperbrick = derive2 { name="hyperbrick"; version="1.0"; sha256="1a6l6dlylqm1dxz573rz5zqxn1nk85hcbfdxk0qwkr7z3yzl13c8"; depends=[caTools dfoptim OpenImageR pbapply raster rgdal]; }; hypercube = derive2 { name="hypercube"; version="0.2.1"; sha256="0m0n64rl5fnhvhfdknrza8a0h5lw8vbgakaqbyfx77ixhwqhjn1l"; depends=[dplyr plotly stringr]; }; hypergate = derive2 { name="hypergate"; version="0.8.3"; sha256="0h36wi4bdxinv7p9alyb7jv1902vdanxx7yvyaw2dcqkdjlzzj49"; depends=[]; }; hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; @@ -10896,9 +10916,10 @@ in with self; { hystReet = derive2 { name="hystReet"; version="0.0.2"; sha256="01nrbk48r1hf1yc953yf1pzryzrjjckwdqhb3pbnwfza8q0aqsfq"; depends=[httr jsonlite lubridate]; }; hysteresis = derive2 { name="hysteresis"; version="2.7"; sha256="1nnfr50nafhimj2j5xpxly3i8xvkwwddz864gklwm9jzdpmv02yh"; depends=[car MASS msm]; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; + i18n = derive2 { name="i18n"; version="0.1.0"; sha256="1cg7cdm3ja3rz4wrn46gvdifi1yx30lrc6j1c9r5iahmc78hlmgl"; depends=[magrittr]; }; i2dash = derive2 { name="i2dash"; version="0.2.3"; sha256="0pj4s47nbs67jnnk0dsna59lrn983zzkybbf6hf4s77sikshmwf0"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; }; i2extras = derive2 { name="i2extras"; version="0.1.2"; sha256="0h9hy9qbw2lk0pxhrn2gygmcx731r38pj08iyfci5axp8fs0cizs"; depends=[data_table dplyr ellipsis ggplot2 incidence2 rlang tibble tidyr tidyselect trending vctrs]; }; - iAR = derive2 { name="iAR"; version="0.1.0"; sha256="1ry81qapffry81531l51mbmarvbx6d349s0w49lqlz0vh31hicgw"; depends=[ggplot2 Rdpack]; }; + iAR = derive2 { name="iAR"; version="1.0"; sha256="1cxqrd2bywifq0k2837p7kn7s9grh6gk940ng0654fzqvy4r5nxs"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; iAdapt = derive2 { name="iAdapt"; version="2.0.1"; sha256="050kzacvf19m8s89layqqf0l85db1k4cd3akb16jrv9wjfi9k61v"; depends=[Matrix shiny shinydashboard]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; }; iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; }; @@ -10945,7 +10966,7 @@ in with self; { iai = derive2 { name="iai"; version="1.7.0"; sha256="1y3lhzzmyxlqv2izk9zcqh22jsg4n2yh9sgkiqqlp500xaz6h4ah"; depends=[cowplot ggplot2 JuliaCall lifecycle rappdirs rjson rlang stringr]; }; ialiquor = derive2 { name="ialiquor"; version="0.1.0"; sha256="0nrp75lzb49lhkxspvaq6wx5c48ny6fq9m3r1bz0v5f2fd5ilrdx"; depends=[]; }; iarm = derive2 { name="iarm"; version="0.4.2"; sha256="0scf1ad87sn4s7ki6hpgk4isy1k3qkdvs18bkwdflsarcx437ms2"; depends=[eRm ggplot2 gridExtra Hmisc PP psychotools vcdExtra]; }; - ib = derive2 { name="ib"; version="0.1.0"; sha256="1rzgpgmg7bzg60dyxmmprcsri5wdbarqgp4ya5h418hnnmh8hg0n"; depends=[lme4 MASS Matrix Rdpack VGAM]; }; + ib = derive2 { name="ib"; version="0.2.0"; sha256="10h3b9ncz59rp8j628axnrl7gksjiyg576672dhcyd3ygd4by7p5"; depends=[betareg Formula lme4 MASS Matrix Rdpack VGAM]; }; ibawds = derive2 { name="ibawds"; version="0.3.2"; sha256="15ra53yswbc189sq5mkip5hcf4c3inzmsg2i7kz0wakvrhc56hd8"; depends=[dplyr dslabs Ecdat ggplot2 kableExtra magrittr rlang scales stringr]; }; ibb = derive2 { name="ibb"; version="0.0.2"; sha256="11rfrf0ap97rsq0yy23sjahp1bin3j31zdd61p8b5mbp0s0k7ci4"; depends=[dplyr httr jsonlite magrittr rlang tibble tidyselect]; }; ibd = derive2 { name="ibd"; version="1.5"; sha256="0rxvy4hn4fpbv6y214ggkmgfvzwns5mkanp4h8201rjk3v84mk2r"; depends=[car emmeans lpSolve multcomp]; }; @@ -10972,7 +10993,7 @@ in with self; { iccde = derive2 { name="iccde"; version="0.3.2"; sha256="0r7g2ydj3yigm2n3qprj65ydrk0lacba7qnig6l6s14zi4bg9xna"; depends=[]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; - icdpicr = derive2 { name="icdpicr"; version="1.0.0"; sha256="0vfiw4f3mdh84b485hqvhjxx1bq15ankpzs2gwa3s93q1ykb8c3j"; depends=[stringr]; }; + icdpicr = derive2 { name="icdpicr"; version="1.0.1"; sha256="099ipcpz1cff7cr572lww34az4wwym8phpbk2ph0545k2fk0c56d"; depends=[stringr]; }; icecream = derive2 { name="icecream"; version="0.2.0"; sha256="0gqad5sf78ggvdjhiis6x0y69ksrk1wgs4b8nxq51xna5wy5yqgl"; depends=[cli glue pillar purrr rlang]; }; icenReg = derive2 { name="icenReg"; version="2.0.15"; sha256="1cjlvj4i5bir5769a22w8bb9477h04d8rpxk9ks72jp6zjjkq5qa"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensBKL = derive2 { name="icensBKL"; version="1.2"; sha256="1zzv80jnn8ilnc1gv4nj24l2fl8805rjhqjgkb0xx4y9zhpg1jkp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; @@ -10999,12 +11020,11 @@ in with self; { idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; - idefix = derive2 { name="idefix"; version="1.0.1"; sha256="1hqq9w0hssczmy8kvpp438fz0r5wdrxzxpkhrljz50rqazr61asy"; depends=[dplyr MASS mlogit Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; + idefix = derive2 { name="idefix"; version="1.0.3"; sha256="0jqjrg0qfzij5bx8r60wpjghsxnszdxgp58ynj10n7q9hc4fhsys"; depends=[dfidx dplyr MASS Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; idem = derive2 { name="idem"; version="5.1"; sha256="1i5h0hg76rrxharlfv33kcbwmvkfyfk92wim93dvpkflnbwsmzfl"; depends=[BH mice Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; }; idiogramFISH = derive2 { name="idiogramFISH"; version="2.0.8"; sha256="1m45858da25zwrm74h69a2a5ly4yy0cl12vkkaqrwzn72snsq3c2"; depends=[crayon dplyr plyr rlang tidyr]; }; - idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; }; idmodelr = derive2 { name="idmodelr"; version="0.3.2"; sha256="02hvlmk38rs0iavwz0qa3ryvyw1ixhjf9bksmadlhxl5pd18016j"; depends=[deSolve dplyr furrr future ggplot2 magrittr purrr rlang stringr tibble tidyr viridis]; }; idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; @@ -11026,17 +11046,15 @@ in with self; { igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.3.0"; sha256="1p3mwc0ny6d0i09bacdy9xzpn6rj2idx444wypn3rz98nddr665c"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.3"; sha256="0i1s53pyibxpqdv4269q9riqwr3yvy207hwljx2gbnaf4jqpf5hk"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.2.11"; sha256="1ph042yinl8ig2x7laha5j1xr14fky9771l5ha87svhynrg732qw"; depends=[magrittr Matrix pkgconfig]; }; + igraph = derive2 { name="igraph"; version="1.3.0"; sha256="09dzc8lslljvhj2q46075vxcmlgkvq2qs500zdqyy9g8scq6iqbi"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; - iheiddown = derive2 { name="iheiddown"; version="0.8.6"; sha256="0w36w875fzxx8parjc6lb9nwvfjs0p2vv1pzd12cb160pgn9y7mc"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pdftools purrr readr remotes rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; ijtiff = derive2 { name="ijtiff"; version="2.2.7"; sha256="187ykflj7b51j2jziqb45bcv9319w67g179505m74kjka897rir4"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; - ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; imabc = derive2 { name="imabc"; version="1.0.0"; sha256="1p420jlvqqcqdjqp7y4mcjkzimw3qiygph5yrvmm75znax3fkg4z"; depends=[data_table foreach lhs MASS truncnorm]; }; image_CannyEdges = derive2 { name="image.CannyEdges"; version="0.1.0"; sha256="0c8pvk91xyys6d2i03yy88kylb3jli5jkpq2s069n7p0yl3z7rr1"; depends=[Rcpp]; }; image_ContourDetector = derive2 { name="image.ContourDetector"; version="0.1.1"; sha256="0h9nq6k99rfmldw1c00k2anlpbjbpm26pp1d7jg2wz334dvlvlij"; depends=[Rcpp sp]; }; @@ -11118,6 +11136,7 @@ in with self; { inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; + inet = derive2 { name="inet"; version="0.1.0"; sha256="1kjy2kgi5v29yk6pv776gwdqzkscjh96p3iv1j906vh47zp8wrag"; depends=[glmnet hdi MASS]; }; infer = derive2 { name="infer"; version="1.0.0"; sha256="1qbpcn7jqbvgwnpiyylj021j8m33p58a204yd1pfkpzd3x2lbsm6"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; @@ -11141,7 +11160,7 @@ in with self; { ingredients = derive2 { name="ingredients"; version="2.2.0"; sha256="11bv4l4fn9kr7y2nfzrwnaya8fi9w3nwcm9vzlqb7dva83rkqbsc"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; - inlabru = derive2 { name="inlabru"; version="2.4.0"; sha256="0qf3d5zk8l0gmqh341c7xslyhxyxmx5nlxg4ks1kfjq1sasnrs5f"; depends=[Matrix plyr rgdal rgeos rlang sp withr]; }; + inlabru = derive2 { name="inlabru"; version="2.5.2"; sha256="007ba3a0mkslvirh4i1a714w0rl7cs6pdhbbjbn7v8hvah78ik7a"; depends=[magrittr Matrix MatrixModels plyr rgdal rgeos rlang sp withr]; }; inldata = derive2 { name="inldata"; version="1.0.3"; sha256="0iz3dlmaw6p81lj406nq4sg4qvl289mn95by10r3zrikf39l0jq2"; depends=[raster sp]; }; inline = derive2 { name="inline"; version="0.3.19"; sha256="1mcr9hgq6kkq03n7pkcccxa7vg8jma0q7lfxc5vvkc6snydk1s8f"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2019.12.5"; sha256="11d8cnrzgq95w7hn234rcwrr1mmrv63f69807pnzxizxbgnp7wz3"; depends=[]; }; @@ -11153,9 +11172,9 @@ in with self; { inplace = derive2 { name="inplace"; version="0.1.2"; sha256="06jb8xzjqywdww8j2i59c8663dfbrhnvj0lh3xm73j39sig6vh7l"; depends=[Rcpp]; }; insane = derive2 { name="insane"; version="0.1.0"; sha256="144fq1lys6wy78vnmz1vd4ghs8agraj1hgg0vwlxcnbykmf50i95"; depends=[broom dplyr DT ggbeeswarm ggplot2 ggpubr ggthemes glue patchwork purrr readxl shiny tidyr]; }; insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; - insee = derive2 { name="insee"; version="1.1.3"; sha256="103b9aw6afq169k839lydfc904wqrwh1bh2r69wa2s61rpwiinwc"; depends=[crayon dplyr httr openssl purrr rappdirs readsdmx rlang stringr tibble tidyselect xml2]; }; + insee = derive2 { name="insee"; version="1.1.4"; sha256="0f0vchk6cwy8i1x921sb4nhzkwf81zgjiys041nhmrj3y4dxnxlz"; depends=[crayon dplyr httr openssl purrr rappdirs readsdmx rlang stringr tibble tidyselect xml2]; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; }; - insight = derive2 { name="insight"; version="0.16.0"; sha256="0gcyps0889rys04bj70br5zfvzcqxd55yawykmns17n9hsixfi3r"; depends=[]; }; + insight = derive2 { name="insight"; version="0.17.0"; sha256="1rxcy8nyg3y50czm3y1x2pibivywcb1bjmvpyqlzg4yy2j84v69p"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.11"; sha256="19ainhxgda58cb70gwxki618wln1v1k4iwvnlvy6s7aldry4wgc4"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; @@ -11167,7 +11186,7 @@ in with self; { intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRinsic = derive2 { name="intRinsic"; version="0.2.0"; sha256="01bgh88f94imqhx63miv0gyjw51sbqidp6p3g0f6p8rl95aqnq6h"; depends=[dplyr FNN ggplot2 knitr MCMCpack pheatmap Rcpp RcppArmadillo reshape2 rlang salso]; }; intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; - intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; + intamap = derive2 { name="intamap"; version="1.4-16"; sha256="1spgxz3cvfcfk7n1agmns2q3bd9gl19q7szq8kzjp7zi9bzd6xb6"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm rgdal sp]; }; intccr = derive2 { name="intccr"; version="3.0.3"; sha256="1sg4pda60xx2zqhwckc0nq4b82xxw0jinaw13p671pw9gb4mz38g"; depends=[alabama doParallel foreach MASS]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.3"; sha256="1raqjc3g9fgyd01iax7hrmkk3nzzfi34a1ywhjrkwv1n9gsc58ns"; depends=[pracma Rcpp RcppEigen]; }; intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; }; @@ -11177,7 +11196,7 @@ in with self; { intensegRid = derive2 { name="intensegRid"; version="0.1.1"; sha256="15vjf39fx6bkay15nbmqnv5vp8w6xy6fzf1lglqr6506pyaqh8w8"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; intensitynet = derive2 { name="intensitynet"; version="1.0.0"; sha256="1mwgz8rp180x7n08clqr0g19f0kxnparv10k98ysxq7shpwqimr1"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; - interactionR = derive2 { name="interactionR"; version="0.1.3"; sha256="1wckp3vz06ary2ydk22iykp1ck3i0bqhq51d8jyafq2h0rjhkyc8"; depends=[car flextable msm officer]; }; + interactionR = derive2 { name="interactionR"; version="0.1.5"; sha256="12m4j29x24gjvck71rpsnh7xpaaq77l1shkgzjvklbvqsg5dk24g"; depends=[car flextable msm officer]; }; interactionRCS = derive2 { name="interactionRCS"; version="0.1.0"; sha256="07yhcgp9jc0fd29drsvdcpg8hw3zafr3njkx4qa5qhp3jsn0m3pm"; depends=[boot mlbench msm pryr pspline rms survival]; }; interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; interactions = derive2 { name="interactions"; version="1.1.5"; sha256="16lrlj0rc9bkxgmackpvcx8wx9pbsnr55vak6zx022ss820h3ljj"; depends=[cli crayon generics ggplot2 jtools rlang tibble]; }; @@ -11200,7 +11219,7 @@ in with self; { intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; - inti = derive2 { name="inti"; version="0.5.4"; sha256="1y6hpxhish3byrd3jlsinhwwfvz4mpcmhbhzxc2fjwyc4a3h36kh"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.5.5"; sha256="0fwhxmfqa3f796h5r5avgr2ahaagqrbs2kqygj56y07nsy4qbgw7"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; @@ -11215,10 +11234,10 @@ in with self; { invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; invacost = derive2 { name="invacost"; version="1.1-4"; sha256="0nj1zzlj7n05ajp7c228cgs0vzlniam4d3x804ncy1wl3d920hc9"; depends=[dplyr earth ggplot2 lmtest mgcv quantreg robustbase sandwich scales]; }; invctr = derive2 { name="invctr"; version="0.1.0"; sha256="0jrbr53kvwrf800z18vz9df9bk7swpd4avnyf59ggz2bc0z2ijwk"; depends=[plyr rlang]; }; - inventorize = derive2 { name="inventorize"; version="1.0.6"; sha256="01rwqqljmlk5bwnvlx0qy6n67q2swjcxp90fp2wipyvl1f46h3m1"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; + inventorize = derive2 { name="inventorize"; version="1.0.9"; sha256="10hywnr3lbv5jbczj8qryvbgr190bglid79hg9rzq07ccsyxmq8c"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.0"; sha256="1wk3ac2rfy0m8442sa2m75s6l3wadx4d4cwas6c8n2xqkrphci87"; depends=[]; }; invertiforms = derive2 { name="invertiforms"; version="0.1.0"; sha256="131h5dlyj38bis2rk2ji3dpdd45iiavfwb4d6cf0gn8rr7ldkwgl"; depends=[glue Matrix sparseLRMatrix]; }; - investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; + investr = derive2 { name="investr"; version="1.4.2"; sha256="12hrvi3gi3hwianjnzfir4771kbrfbcy35xmfksp0lxrfxvm61ra"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.2"; sha256="1cyl8wvbngdrdkkckng1bs699rjp737j99kbd8r155fjj0370nx4"; depends=[filenamer stringr]; }; ioanalysis = derive2 { name="ioanalysis"; version="0.3.4"; sha256="0nprfqhwy5j11f5xgzaz8iw991cvgdcdmfca8sdvw8mci0cwkh5m"; depends=[ggplot2 lpSolve plot3D]; }; @@ -11254,6 +11273,7 @@ in with self; { ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; + iq = derive2 { name="iq"; version="1.9.3"; sha256="00pcvrz0wsdc98xh2lb94md76r0x0w4lzf157wncxjba38cz9kg8"; depends=[Rcpp RcppEigen]; }; iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; irace = derive2 { name="irace"; version="3.4.1"; sha256="1dhlspv1gqg7cm7j95zhl0k2zr0s159krjmxm07k5fp68ax95sky"; depends=[R6]; }; irboost = derive2 { name="irboost"; version="0.1-1.1"; sha256="03rgcmaahq1mhv15lid41n39wiqn4lrnc4q0rq25q7xg328vc9d5"; depends=[mpath xgboost]; }; @@ -11264,13 +11284,13 @@ in with self; { irr = derive2 { name="irr"; version="0.84.1"; sha256="1hs4ylqm51smrmgsph7z9arwkz5px2a320acar324fkjdd3yifp7"; depends=[lpSolve]; }; irrCAC = derive2 { name="irrCAC"; version="1.0"; sha256="1j9z8vz5zcl51a8qq6maf9sw0dqaknkrai7gp31mzag7b6vwms06"; depends=[]; }; irrICC = derive2 { name="irrICC"; version="1.0"; sha256="0vi5g97kbyhwxz242d1hpqf11izd3kmlzh3997v07md1llcsp6s3"; depends=[]; }; - irrNA = derive2 { name="irrNA"; version="0.2.2"; sha256="1l7ln5ahwnjvvd5gmismwfvljkg6vpipgi7hlcdlqlxadl165pry"; depends=[irr]; }; + irrNA = derive2 { name="irrNA"; version="0.2.3"; sha256="1s50k0vygqh3zcvy5j6h5krv9gfiv8sakmnbf90hpkh0rlirgf88"; depends=[]; }; irt = derive2 { name="irt"; version="0.2.5"; sha256="13cfmzr7bw5jbcwykvjli5lsnbcr7n8w6nljwsmnsa42fa7f2159"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; irtoys = derive2 { name="irtoys"; version="0.2.1"; sha256="0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q"; depends=[ltm sm]; }; - irtplay = derive2 { name="irtplay"; version="1.6.3"; sha256="026h519ycyvn55c8gih2snwrljnvjwsylkdr5jpapviv8304mdj0"; depends=[dplyr ggplot2 gridExtra Matrix purrr reshape2 rlang statmod tidyr]; }; + irtplay = derive2 { name="irtplay"; version="1.6.4"; sha256="128xw3ylcirfls4fif8ilnphfhpz9pn7pmg4sl1qrwqdh0xksgk2"; depends=[dplyr ggplot2 gridExtra janitor Matrix purrr reshape2 rlang statmod tidyr]; }; irtrees = derive2 { name="irtrees"; version="1.0.0"; sha256="003gmnv2d0xsqd54chadkbd8c8kf8fwr4lza86k6qkfs7d3ifkjm"; depends=[DiagrammeR tidyr]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; @@ -11298,8 +11318,8 @@ in with self; { isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isotracer = derive2 { name="isotracer"; version="1.1.2"; sha256="1p78p6604hcrnjvahk6q9dqcg6fcqgbqanrc820zxixn34k49v15"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.5.14"; sha256="1bza63nm9sxlr126rilvlvpc43dng0ln4mp40lwb5s8xiv5qai29"; depends=[Rcpp]; }; + isotracer = derive2 { name="isotracer"; version="1.1.3"; sha256="1lvgpl7i4ggx4b8gvw6cwggjxxn7cdi4xkdnabvi3srbwxw6ri42"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan StanHeaders tibble tidyr tidyselect]; }; + isotree = derive2 { name="isotree"; version="0.5.15"; sha256="1w37h5cl7qs3x5750i0i2wgnkm3l8cb9j1krfaw6bycpkjhab5nb"; depends=[Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; isqg = derive2 { name="isqg"; version="1.3"; sha256="1988bc5n4b5mgxrfl1774vfgaw7rxm9vlaxnkx26phjzhlr1ix9h"; depends=[BH R6 Rcpp Rdpack]; }; istacr = derive2 { name="istacr"; version="0.1.3"; sha256="14nhd3v8l827mb1fxfhsxklzxbf4316ijp2qkc99qp7ydmxbk0rd"; depends=[curl jsonlite]; }; @@ -11333,16 +11353,17 @@ in with self; { ivprobit = derive2 { name="ivprobit"; version="1.1"; sha256="05b5gf5gmi2yrkg61n7w12qlgpnjakd1z8hhqxy6py8hahsf84gm"; depends=[Formula]; }; ivreg = derive2 { name="ivreg"; version="0.6-1"; sha256="1dv1vmhnf31a2rn02yy9r34jzfwb8k34y15zpsqp8557ylr1s7nm"; depends=[car Formula lmtest MASS]; }; ivregEX = derive2 { name="ivregEX"; version="1.0"; sha256="0zh3rqvhn8ald6lxv9kywy2v1p0nr9ijv6plhpbxc6k51zzsgyl8"; depends=[AER Formula lmtest sandwich]; }; + ivs = derive2 { name="ivs"; version="0.1.0"; sha256="1qmgscpp5xni6v9np7r3np79vk2i9w4vn5p5q2hlq3bv8c4lrpp5"; depends=[glue rlang vctrs]; }; ivsacim = derive2 { name="ivsacim"; version="2.1.0"; sha256="0pldg086kaaqc2wab1m61anabqaf0mffv1hsb8plz1qn2f8gdcp3"; depends=[Rcpp RcppArmadillo]; }; ivtools = derive2 { name="ivtools"; version="2.3.0"; sha256="1wv0r9dy893hafbbrjcjrphb8dgql71ya4zfbkl5dfp7d4ncfxl0"; depends=[ahaz data_table nleqslv numDeriv Rcpp survival]; }; ivx = derive2 { name="ivx"; version="1.1.0"; sha256="1dg09aajk9rqmrlwq4xw7qd5ra1z8wjxipy5l85sl1nzii250drq"; depends=[Rcpp RcppArmadillo]; }; - jSDM = derive2 { name="jSDM"; version="0.2.0"; sha256="13l3xpk7qfwvsq3zbpiq20j6168f4xxric055vf5p1siw0akvsh1"; depends=[coda corrplot doParallel foreach MASS Rcpp RcppArmadillo RcppGSL stringi]; }; + jSDM = derive2 { name="jSDM"; version="0.2.1"; sha256="0i54gsvs63705cmn7bzna1f5nrnyr40ffbkjk202dl689lp05fb3"; depends=[coda corrplot doParallel foreach MASS Rcpp RcppArmadillo RcppGSL stringi]; }; jScore = derive2 { name="jScore"; version="0.1.0"; sha256="0hb63l10cwvpvix155d16v35lp1v88lp69f6q1s09njc6qdsg212"; depends=[]; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; jaatha = derive2 { name="jaatha"; version="3.2.2"; sha256="1if21hlbf0gz6p6f9h21cxdxcqxv3b54wx5zl4hmiaq9i6zrf8rr"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.1"; sha256="0z7i6ni1bhih5yxwng1xxf8cgg3bb1il3p32rp5vfz2hfdm68vag"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; - jack = derive2 { name="jack"; version="2.0.0"; sha256="1pm2d1k138qfz3rvvh83ybyvgr687y95c352629lyy1j87bsd15g"; depends=[DescTools gmp JuliaConnectoR multicool mvp partitions Ryacas]; }; + jack = derive2 { name="jack"; version="3.0.0"; sha256="191daxlkkz4494nvnqq6rdk8gkm6ial39cp63dfmkhhd021ay9ld"; depends=[DescTools gmp gmpoly JuliaConnectoR multicool mvp partitions Ryacas]; }; jackalope = derive2 { name="jackalope"; version="1.1.3"; sha256="1cslrl2cvcpi2kisb2plkz8c3wfxkbkf816nnyb06k4mv3gy4r5d"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; @@ -11352,13 +11373,12 @@ in with self; { jagsUI = derive2 { name="jagsUI"; version="1.5.2"; sha256="1ig2v5k1xjggh694azr96cv80qapq8al7dhsjhvkx0dihp8kgad2"; depends=[coda rjags]; }; jagstargets = derive2 { name="jagstargets"; version="1.0.1"; sha256="1ps0gmfgsgig793hfbwpwcnfjl8jni87nmx6i3az5k9y08p1i8ra"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; - james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; }; janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.1.0"; sha256="09nqm957m2f54y2l30619b58x4i7gxwvr2lwg5kly5xy1ya1a1nn"; depends=[dplyr lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; jaod = derive2 { name="jaod"; version="0.3.0"; sha256="071j3xqk7gzsic1sk8v0pwmqv6pav0nj9vvbskss3l1gczy80dfr"; depends=[crul jsonlite tibble]; }; japanmesh = derive2 { name="japanmesh"; version="0.1.1"; sha256="1p6kssz0q2zjx7yd4x7jf56n62nx4g8gmbc8v2din1mgks4rm614"; depends=[dplyr geosphere lifecycle magrittr purrr rlang sf stringr tibble tidyr units vctrs]; }; japanstat = derive2 { name="japanstat"; version="0.1.0"; sha256="0rd2q23s9r075ns47ccmr8fjvdcv2jncjs9w1c668s597cwkf6lb"; depends=[cli dplyr httr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; - jarbes = derive2 { name="jarbes"; version="1.7.2"; sha256="0qjnx0m65f6a8r6y5mwplaq518lrsf73k8zbf728v857nbjlhf2l"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags]; }; + jarbes = derive2 { name="jarbes"; version="2.0.0"; sha256="0lx565m9abvai47ndpryxbhpsdnh76sbaf0mixpd58raqnysc26b"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags tidyr tidyverse]; }; jcext = derive2 { name="jcext"; version="0.1.1"; sha256="02zppiyq3gy551zi1g00gam1w4y1wgzn5zi9wrcz8yw915dla0ix"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; }; jcolors = derive2 { name="jcolors"; version="0.0.4"; sha256="18dmjcrci0z1xy2kglrarzm0idr9g3nhbbw7f1ijls3i0piqdri6"; depends=[ggplot2 scales]; }; jcp = derive2 { name="jcp"; version="1.2"; sha256="120hhysgnb5992ss2ays7ksyy0xb251lsxgnxihc11h2rqg6wqv8"; depends=[]; }; @@ -11381,10 +11401,10 @@ in with self; { jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; - jmv = derive2 { name="jmv"; version="2.0"; sha256="0fhjp3ih46r34yiqxbd2kpwp88nhyrqfwh729l14sj3aw142nlbi"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; + jmv = derive2 { name="jmv"; version="2.3.4"; sha256="0mhai7kvc6fpsybpgj6adnbqsg3nlx16zfjdg6lxkhzjdv0s4gpm"; depends=[afex BayesFactor car dplyr emmeans GGally ggplot2 ggrepel ggridges GPArotation jmvcore lavaan magrittr MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.1"; sha256="0yg6j122x9hcyjw5lfdz6fj4mpj5w8z3cdn9nlfi79yl7ivzf9dm"; depends=[rjson zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.0.0"; sha256="1q412v8z0wbiqab4czabg75w976591lh59gbbhqz1avkas3jjhf2"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; - jmvcore = derive2 { name="jmvcore"; version="2.2"; sha256="009hkg378vfkzxbz323m7zfmfyh0j742xf4381qb6s81v3wmg4dq"; depends=[base64enc jsonlite R6 rlang stringi]; }; + jmvcore = derive2 { name="jmvcore"; version="2.3.4"; sha256="1ybc380xnv2z7jszazjzni5n46xlqfbl75yflrrdpy65vxai4kqa"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; @@ -11406,7 +11426,7 @@ in with self; { jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; jpstat = derive2 { name="jpstat"; version="0.2.0"; sha256="051mlyxd3xbik8fw1343xi72smmbaz6lvyn340m745y4jjx48006"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; - jqr = derive2 { name="jqr"; version="1.2.2"; sha256="1v3qjqblwn15mlw3cgmrmh78kcckqrj54wnfyfhrfxdsiqi5d0dk"; depends=[lazyeval magrittr]; }; + jqr = derive2 { name="jqr"; version="1.2.3"; sha256="1a91zcjxdilhqdyr2lipnwc35f90h0wyqlbg0vw9ay7sq6llxgs9"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; @@ -11418,7 +11438,7 @@ in with self; { jskm = derive2 { name="jskm"; version="0.4.3"; sha256="04bm4haylhjj5wf09jmpznav7shnlnhag7kxl4yqp3z5572dvj1g"; depends=[ggplot2 gridExtra scales survey survival]; }; jsmodule = derive2 { name="jsmodule"; version="1.3.0"; sha256="0a8ckml3i792y0ddff34l686f07vl1bqrs6q3gjmqs0hcrwl0lll"; depends=[data_table devEMF DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survC1 survey survIDINRI survival timeROC]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; - jsonStrings = derive2 { name="jsonStrings"; version="1.0.0"; sha256="1rcgfzcbypmq2fcngl63ik6z13ir1687ya8aww2v8bk56h19pdxa"; depends=[Rcpp]; }; + jsonStrings = derive2 { name="jsonStrings"; version="2.0.0"; sha256="0ddpi11p9aaqbp29c46hfpc63c5ppq2ma1r3xhfqmflndwqhidaj"; depends=[R6 Rcpp]; }; jsonify = derive2 { name="jsonify"; version="1.2.1"; sha256="1kpv6whi6bggi0ij7krzfr0fly6c2j9y54fr5ahgcjp36amr34cj"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; jsonlite = derive2 { name="jsonlite"; version="1.8.0"; sha256="0k6dal7gmm19jl5sjsry5gwbnhsbrnn00q3iixig8k6bxgpr463v"; depends=[]; }; @@ -11442,7 +11462,7 @@ in with self; { kStatistics = derive2 { name="kStatistics"; version="2.1"; sha256="018xlxcykjfi2kagf7jvavry8l7i146rqbnb4lz7ccc5q44schwd"; depends=[]; }; kableExtra = derive2 { name="kableExtra"; version="1.3.4"; sha256="1c5vzy95cbz36jwyssr927qicrayifinv861rvnmg4nghb1gl7q9"; depends=[digest glue htmltools knitr magrittr rmarkdown rstudioapi rvest scales stringr svglite viridisLite webshot xml2]; }; kader = derive2 { name="kader"; version="0.0.8"; sha256="15f2swgngw5rdjdsh5kd55wm2nivlfs8pv4mdn0b75qihwgg1zkk"; depends=[]; }; - kairos = derive2 { name="kairos"; version="1.0.0"; sha256="1yi2igflvjjyma1kgrnnnkvmz46axz3dil02l7n26l569bhnp0lh"; depends=[arkhe dimensio extraDistr ggplot2 rlang]; }; + kairos = derive2 { name="kairos"; version="1.0.1"; sha256="0ijvvcs5y61jswjlj56zrpgcv1f1albcnxfzhan00y8ap830xva5"; depends=[arkhe dimensio extraDistr ggplot2 Hmisc rlang]; }; kamila = derive2 { name="kamila"; version="0.1.2"; sha256="01rwalv2qigxl3j3jyhrdbxlarwf0xdc8xa6c42sgcl6qpna5vn7"; depends=[abind gtools KernSmooth plyr Rcpp]; }; kangar00 = derive2 { name="kangar00"; version="1.4"; sha256="0cgyxvgk6bxvh77y9vl0p024dya9ffr9fhmwlcxbysbr4p3kyiaj"; depends=[bigmemory biomaRt CompQuadForm data_table igraph KEGGgraph lattice sqldf]; }; kantorovich = derive2 { name="kantorovich"; version="3.0.0"; sha256="1iwbxj2c1085pc57zkb5lklkd0bvx0i27a94r526zv7bxaf0kgrd"; depends=[CVXR gmp lpSolve rcdd Rglpk slam]; }; @@ -11452,14 +11472,14 @@ in with self; { kappalab = derive2 { name="kappalab"; version="0.4-7"; sha256="16bwbwwqmq2w7vy8p3wg0y80wfgc8q5l1ly1mqh51xi240z1qmq0"; depends=[kernlab lpSolve quadprog]; }; kaps = derive2 { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; - karel = derive2 { name="karel"; version="0.1.0"; sha256="0ncjzfzm8a6vx2mswvck3j6vnpqhzrjd5gd371xa5cgi0w1figa9"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; + karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; katex = derive2 { name="katex"; version="1.4.0"; sha256="0kgz2qck90h9kaxvy40nii03ib02z757bmw8sgacik82hmj0fxx8"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.0.0"; sha256="1zmdwds1p430770426lhwhffissb44x27wqh1vbz7z52ma0h7l91"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; kcpRS = derive2 { name="kcpRS"; version="1.0.0"; sha256="067j91rhw56kf15h7hxpm9qr6i59fvy5fh9ycfdqcps83wjgx62x"; depends=[doParallel foreach RColorBrewer Rcpp roll]; }; - kde1d = derive2 { name="kde1d"; version="1.0.3"; sha256="03h5xd0mwpj8gs5bwf6xhlc1kfd99l1l3w79gfrix67i14nnaifn"; depends=[BH randtoolbox Rcpp RcppEigen]; }; + kde1d = derive2 { name="kde1d"; version="1.0.4"; sha256="0mj5pd353k7bqabiryy6ss2ifq1nfxlsl2vyld6d53z04zjb4khj"; depends=[BH randtoolbox Rcpp RcppEigen]; }; kdecopula = derive2 { name="kdecopula"; version="0.9.2"; sha256="0g5c12wm3byd4chd8i9mxv599gsf4ip4qghx83j3mmhsmn05zf4y"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdensity = derive2 { name="kdensity"; version="1.1.0"; sha256="07d1p3ysdm66a9sf0gih5xjb3wfab44c3sr8aaraz22s2a9q9b55"; depends=[assertthat EQL univariateML]; }; kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; @@ -11476,7 +11496,7 @@ in with self; { kerTests = derive2 { name="kerTests"; version="0.1.3"; sha256="0981q4n4wrv62x4b8jccj5hx58n975rls3sn3s0mz7ajhh1xxbi9"; depends=[]; }; keras = derive2 { name="keras"; version="2.8.0"; sha256="10zvy4lmhb2sbn0gsm12pf95pxj9bmi8241ap1n6170xsld9phcf"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; - kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.4"; sha256="1xpilrlf0l323aikq1lflc166wr0xffj0psq1pfhlmm51zhv8190"; depends=[crayon data_table dplyr echarts4r keras magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; + kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.5"; sha256="0mnigff937mcy5saamx7r6rp8mghnghnlzv0hancnmccv7rhfnnj"; depends=[crayon data_table dplyr echarts4r keras magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.5.5"; sha256="0qkjjrjgny8jvklgbddx0n1fq2bwr434shdn7xzdp0krxxnh7h64"; depends=[doFuture doParallel lattice MASS nloptr numDeriv Rcpp testthat]; }; kerndwd = derive2 { name="kerndwd"; version="2.0.3"; sha256="0lvm007wzhyagyafmq47819hn66riwdcpymn56clc1sgch9i933m"; depends=[]; }; @@ -11485,7 +11505,7 @@ in with self; { kernelPhil = derive2 { name="kernelPhil"; version="0.1"; sha256="0pzsknb0ibm3v0ibfaklb4g2mx7zrva4m29356cirwd29nmd8bqw"; depends=[benchmarkme directlabels dplyr ggplot2 gridExtra Hmisc pbapply reshape2 rgdal wordspace]; }; kernelboot = derive2 { name="kernelboot"; version="0.1.7"; sha256="1465n9fasyxwm4xx9vajaf5n355z2qdkfzhpp3a6mkv58pydbjss"; depends=[future future_apply Rcpp]; }; kernhaz = derive2 { name="kernhaz"; version="0.1.0"; sha256="1cxwjnfyhxfjdbhs21airycs704jic21pdpsbxsx37wkl11cxpai"; depends=[doParallel foreach GA rgl]; }; - kernlab = derive2 { name="kernlab"; version="0.9-29"; sha256="0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3"; depends=[]; }; + kernlab = derive2 { name="kernlab"; version="0.9-30"; sha256="10gfb542nbl1d5pfy6r7gcg3j1ikra9l18r6xjv8lzp5ka1kmz28"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; @@ -11506,7 +11526,7 @@ in with self; { khroma = derive2 { name="khroma"; version="1.8.0"; sha256="07z0k3gg5hr61l03xljfmgjsrsbljpb3ha0mhkwgfq85wiwkmnr3"; depends=[]; }; kibior = derive2 { name="kibior"; version="0.1.1"; sha256="1acrdlqbklhhd69i1gija8r3nsdgcnfvk5ngz7b2ndy2f58w5ynf"; depends=[Biostrings data_table dplyr elastic jsonlite magrittr purrr R6 rio Rsamtools rtracklayer stringr tibble tidyr]; }; kidney_epi = derive2 { name="kidney.epi"; version="1.2.0"; sha256="1hd6w7kxim5slmmqalf5sfjg8jcvhyzn5g4gf6h0lmaprsfszhja"; depends=[]; }; - kim = derive2 { name="kim"; version="0.4.21"; sha256="0sn6m3mnf8d8ghdybyrsckvvmj8j5djg41f87ar7m764pm39prhl"; depends=[data_table remotes]; }; + kim = derive2 { name="kim"; version="0.5.3"; sha256="0097g5a49a324i80li41hlwvkf9y0vfigiwvggvcnq02l3fzzz0r"; depends=[data_table remotes]; }; kimisc = derive2 { name="kimisc"; version="0.4"; sha256="0nbjspbq9akhmamfdn192p5b6ki7xqhp422ih6v77xsnrhl5m24z"; depends=[memoise plyr pryr]; }; kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; }; kindisperse = derive2 { name="kindisperse"; version="0.10.2"; sha256="0f2i2j1mwk6bwsc42xkkf18nyffp1983bbarwvscjj7saibhfpyj"; depends=[dplyr fitdistrplus ggplot2 ggrepel here LaplacesDemon magrittr plotly readr rlang shiny shinythemes stringr tibble tidyselect]; }; @@ -11517,20 +11537,20 @@ in with self; { kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.7.0"; sha256="1z2l6bn53mwkll9ki4169lqlz6wcfp29xzdrqyw606j2xrs4wc22"; depends=[kirby21_base]; }; kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; }; kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; }; - kit = derive2 { name="kit"; version="0.0.10"; sha256="05gsvz95cfmw5pkbdcd2b9pqfjpnq78jhv722hl1x8lx7ivw2mla"; depends=[]; }; + kit = derive2 { name="kit"; version="0.0.11"; sha256="145kk1kjcg2qlgkbws746vz0bzf0zn0nr7hl6hpsd11260pa1bjh"; depends=[]; }; kitagawa = derive2 { name="kitagawa"; version="3.1.0"; sha256="190xi88zc3vybpyawayh8m78sgcn951n3axmc2fc67sic458r02s"; depends=[Bessel kelvin psd]; }; kiwisR = derive2 { name="kiwisR"; version="0.2.0"; sha256="14fzf72swy221jcbiplss9dh7g03idrpbbyvbxp4bcqpxwr6hbsa"; depends=[dplyr httr jsonlite lubridate purrr tibble]; }; kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; kko = derive2 { name="kko"; version="1.0.1"; sha256="08mgi7j1kirfnjsj3xi2wgr32cnqb88vxs15gfm6f1gq853xvhch"; depends=[doParallel ExtDist foreach grpreg knockoff]; }; - klaR = derive2 { name="klaR"; version="0.6-15"; sha256="1bhgkq6spjawy5lsh663rnby4fzrx4k2qwqp4ci4p9pq8g35pzjv"; depends=[combinat MASS questionr]; }; + klaR = derive2 { name="klaR"; version="1.7-0"; sha256="1641f5xf68424l34ll5vplys6n8is0zk8ncs3dg1pz8rxx854ydl"; depends=[combinat MASS questionr]; }; klassR = derive2 { name="klassR"; version="0.1.9"; sha256="1drpiwmqyql6q69ldr8ya8sqg1m2jld5j7xs4dghwdpjlbipy6zv"; depends=[httr jsonlite tm]; }; - klausuR = derive2 { name="klausuR"; version="0.12-13"; sha256="0j05vmdcw0jagixw5b1s4lasv1n7bdlayxdqrnz97iv501pkj2qb"; depends=[psych xtable]; }; + klausuR = derive2 { name="klausuR"; version="0.12-14"; sha256="1nc84q5jaya4d7bi1m8zwbmyfsxzmv470nq2nj2j8xn5jv6ch4a5"; depends=[psych xtable]; }; kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; klexdatr = derive2 { name="klexdatr"; version="0.1.2"; sha256="141xs03sb0ixhjpr388fwf5h124mqkbj0k1xqw0whdhrm5051qsz"; depends=[sf]; }; klic = derive2 { name="klic"; version="1.0.4"; sha256="1ggsdq8xcg6hi12rq356myhngx3j475gpwlvpynm1581r4z0lkbk"; depends=[cluster coca Matrix pheatmap RColorBrewer]; }; klsh = derive2 { name="klsh"; version="0.1.0"; sha256="1r354fd5da6mp7v3048ii09hnghhfwdg6pvmx2ib0cr88ql431sy"; depends=[blink plyr Rcpp SnowballC stringi]; }; klustR = derive2 { name="klustR"; version="0.1.0"; sha256="1g2q6h3cbm8v3gqz0f6v8bl5na9972k38d94czjfxmx4cv7wfgx8"; depends=[htmlwidgets jsonlite]; }; - km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; }; + km_ci = derive2 { name="km.ci"; version="0.5-6"; sha256="18sc9vhbdgks8lhk2nfxkkayh8j4j227hl63fm5p04f7z4wm6wc1"; depends=[survival]; }; kmc = derive2 { name="kmc"; version="0.2-4"; sha256="0y8bdgdxsz53fiqc2yr39agndxs4zxj7mmplj273map9k0slnnqk"; depends=[emplik Rcpp rootSolve]; }; kmed = derive2 { name="kmed"; version="0.4.0"; sha256="0lm22wrvv8pfndy1ii1wp54makfp37hism3z9hp700zhpml4nnch"; depends=[ggplot2]; }; kmer = derive2 { name="kmer"; version="1.1.2"; sha256="0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"; depends=[openssl phylogram Rcpp]; }; @@ -11541,7 +11561,7 @@ in with self; { kmodR = derive2 { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.37"; sha256="0qyp78v3hz4qimlc3w4hj5dzp44n2w085ay0l1zvxsxs9142mk9r"; depends=[evaluate highr stringr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.38"; sha256="1bg7nmd2bvfd2gscp4nly4a2c05bpgzq536bmmf93vaf860yhf6i"; depends=[evaluate highr stringr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; @@ -11556,7 +11576,7 @@ in with self; { koRpus_lang_en = derive2 { name="koRpus.lang.en"; version="0.1-4"; sha256="1faj065wjj7a68i57y7zmrrj4ckp01gvq8qknf6a56idi8kzr732"; depends=[koRpus sylly_en]; }; kofdata = derive2 { name="kofdata"; version="0.1.5"; sha256="0l0fiamhx4qqqpfafjf8ksnj37q2ynj45b025vvy4q6y286i0w7j"; depends=[httr jsonlite xts zoo]; }; kofnGA = derive2 { name="kofnGA"; version="1.3"; sha256="0w0881ydnqdah04sifi25ypzxdwnsiqxfq1xam4yhr670bdak1vm"; depends=[bigmemory]; }; - kohonen = derive2 { name="kohonen"; version="3.0.10"; sha256="1ck7j13x701g67bx81x7plszz804jfhl1yg42krcj9x88vm5cscr"; depends=[Rcpp]; }; + kohonen = derive2 { name="kohonen"; version="3.0.11"; sha256="1bk3j0n8w4fhffv89rgyn4n21c0wcx6lr8jv4wbagpxprl585381"; depends=[Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="1.0.0"; sha256="0h4r7bd9989pahx34lc2i5h1f8nipir941l7sahhgz28lskfkc3h"; depends=[glue rlang sf stringr tibble]; }; komaletter = derive2 { name="komaletter"; version="0.4.2"; sha256="1cll8cb69gyxl5mg04jibxf7szh38xrqksjkcswbgjcqidp6yxi2"; depends=[rmarkdown]; }; konfound = derive2 { name="konfound"; version="0.4.0"; sha256="14d8a1ngrf24gbxfg8c8h4svjvsjc3gflcnzxza17xv2rcgzygnr"; depends=[broom broom_mixed crayon dplyr ggplot2 mice purrr rlang tibble tidyr]; }; @@ -11577,7 +11597,7 @@ in with self; { ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; }; kst = derive2 { name="kst"; version="0.5-2"; sha256="0xkmwr4222h4r5dzmfgr0zk8gx7bplm865p5snw2q6h46rbfsasv"; depends=[proxy relations sets]; }; kstIO = derive2 { name="kstIO"; version="0.3-0"; sha256="0pmgb7n4gvslzc6qhqga39593k45vimj1y774bfsxhsacsb1ad9l"; depends=[kstMatrix MASS pks relations sets stringr]; }; - kstMatrix = derive2 { name="kstMatrix"; version="0.1-2"; sha256="1z5gs0x80dq549mba2sy1nfhsphrpkrydalj2jiwqb7fmwqknm3r"; depends=[]; }; + kstMatrix = derive2 { name="kstMatrix"; version="0.1-3"; sha256="1yqf902gf9dgqkcr9hg8yw70ng2jqj66v969j0hnmiw28mnjkn5w"; depends=[igraph]; }; ktaucenters = derive2 { name="ktaucenters"; version="0.1.0"; sha256="15ddjr4c90b5hc4977gk35zb2kswrcvai3xighy7qj6g9lgiszgf"; depends=[dbscan dplyr GSE MASS]; }; ktsolve = derive2 { name="ktsolve"; version="1.3"; sha256="0brxqb60m1lyqhsmds1c3c6cmbcxlzk2nwvi0fhkc8ziwzlfmd09"; depends=[BB nleqslv]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; @@ -11585,17 +11605,15 @@ in with self; { kutils = derive2 { name="kutils"; version="1.70"; sha256="06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.3.0"; sha256="1rlm7i95yw66asgkag93phig2y9lic4xl2fv3cbnr3v751f6a59m"; depends=[hydroGOF lattice]; }; - kyotil = derive2 { name="kyotil"; version="2021.5-14"; sha256="1wimyjh78w3bimijr8ym0642kdag4zryildyx3v1p37cjy8788b9"; depends=[]; }; + kyotil = derive2 { name="kyotil"; version="2022.4-5"; sha256="0q5dwqnar79g9y8xwwydvyx2y677vnhpryb94flwxwl87926y6zl"; depends=[]; }; kza = derive2 { name="kza"; version="4.1.0.1"; sha256="1vx7wc8iwmr9d6ff2kcy6y3nyfj6jfzv4hxkv1fsas0rbjgfick4"; depends=[]; }; - kzfs = derive2 { name="kzfs"; version="1.5.0.2"; sha256="0x0fc807p0pwsjkhjq51ymwr9nhs6cb0m82029cz8bbn3yf6cymq"; depends=[digest kzft]; }; - kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.6"; sha256="1cv48rbq080z7zx32hmlkpq7mi5axr09a1hyv3knl1vb9gql4qjq"; depends=[Rcpp RcppArmadillo]; }; l1ball = derive2 { name="l1ball"; version="0.1.0"; sha256="1ryq1vfkwg465kgxbb2wf8df7qa85yr8lbx3a58j0az8dqkyzqix"; depends=[VGAM]; }; l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; }; l1spectral = derive2 { name="l1spectral"; version="0.99.6"; sha256="19q30g67pf2gx2h6s3il87n910f011lih3lh9321pkh4idl4awnb"; depends=[aricode caret cvTools dplyr ggplot2 glmnet igraph Matrix Rcpp RcppArmadillo]; }; l2boost = derive2 { name="l2boost"; version="1.0.3"; sha256="1ma11x5wb2iqh10wdlwbwdvgzm4qxp94c5pxgvnmwqzmjgngirdh"; depends=[MASS]; }; - laGP = derive2 { name="laGP"; version="1.5-5"; sha256="1a269cy9qmjldb5hv1nl9naq1rr35z37xjpp4kannj6p560fm476"; depends=[tgp]; }; + laGP = derive2 { name="laGP"; version="1.5-6"; sha256="01x0xkbbnh5kii34gqq7agp5cw7ydxzbkkrxz45hfnpkcppds4wp"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="2.0-1"; sha256="099rzl9hy70rmb5fg0vx26mlhr4ra2s0hl3jgv22s8hqpvlmakas"; depends=[cluster MASS mgcv Rtsne]; }; label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; @@ -11631,19 +11649,20 @@ in with self; { landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.4"; sha256="1qsm0h6lcg4a7s6g1am305rcxbrrf2hb6ypd29g5k7kj80fwg1rl"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.1.2"; sha256="18mgscfc21rl4fdsrhw06ydrd29w2wwfn69lm3cvw4illb2vn64r"; depends=[DBI doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; + langevitour = derive2 { name="langevitour"; version="0.2"; sha256="0bzaskhx68x1vbxinsn8fi7y0332wikaig4ia44scbyywm4vhc5y"; depends=[htmlwidgets]; }; languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.4"; sha256="1q82shdcdd84nr6bnfwgyyb81z8dycvj1i3vhwvdg710s15rgiyk"; depends=[attempt curl httr jsonlite]; }; languageserver = derive2 { name="languageserver"; version="0.3.12"; sha256="0dmsjnn84r3wlzrf91xwxcwi4y9vcrwiymz14ixw0jc0kys185a3"; depends=[callr collections fs jsonlite lintr R6 roxygen2 stringi styler xml2 xmlparsedata]; }; languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.1.0"; sha256="0svqaz1j8vhfnm31bfp4gqshdj73wmljva4kxcv2qajmcdiqbd2s"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.1.0"; sha256="0g85csp1f2yc8jwlzanjivp6s3jx44w4p3ippcarq6s7nrz9p228"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate magrittr openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.1.2"; sha256="1s24wkh88lln4h93acpldjahf1d57n6zl1szvq7ihynylb03h6xd"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; - lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; }; + lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1.1"; sha256="1hc05irjwcw54hdrdbwsxfr5b0qq7dysvybzm04jyixqs5b2m8wx"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; latentcor = derive2 { name="latentcor"; version="1.2.0"; sha256="1kqsiaz84cln6l6ajzn2grrc6bch7pfsrr39l2jvkmcnp8n5cimi"; depends=[chebpol fMultivar ggplot2 heatmaply MASS Matrix mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; @@ -11659,7 +11678,7 @@ in with self; { latticeExtra = derive2 { name="latticeExtra"; version="0.6-29"; sha256="04fzwcqs594rk5qp98yilh3kdh3sw4xf8wld5rp94ggpaqfw7bbc"; depends=[jpeg lattice png RColorBrewer]; }; lava = derive2 { name="lava"; version="1.6.10"; sha256="0bi3c1aqwlq7jbz4raz6vga4r264w7lldi0i62xjlbl7hnlgi23s"; depends=[future_apply numDeriv progressr SQUAREM survival]; }; lavaSearch2 = derive2 { name="lavaSearch2"; version="1.5.6"; sha256="0m5dwfmpcmicrpasx2raac2zylss416bxxgb3mg3abpll89iw9fx"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme Rcpp RcppArmadillo reshape2 sandwich]; }; - lavaan = derive2 { name="lavaan"; version="0.6-10"; sha256="0dwc8rgrzyrrb0ivx297ln2qbrsxbpn6mdf7laiffhspdpml8sad"; depends=[MASS mnormt numDeriv pbivnorm]; }; + lavaan = derive2 { name="lavaan"; version="0.6-11"; sha256="026k32paf51lpy6zxm9m81zg9szx14j37dxdip6nba334jw97h9c"; depends=[MASS mnormt numDeriv pbivnorm]; }; lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lavaanPlot = derive2 { name="lavaanPlot"; version="0.6.2"; sha256="03icyydr6sv4jkdfdjchsdrscr9lz9q74x5q17cx2iw3383j6lz5"; depends=[DiagrammeR lavaan magrittr stringr]; }; @@ -11667,7 +11686,7 @@ in with self; { lawstat = derive2 { name="lawstat"; version="3.4"; sha256="1zrx5lsqfxlqjr68iz9hqghsla4m25hn5lyf8jwhw5229sw0n7a1"; depends=[Kendall mvtnorm Rdpack]; }; lax = derive2 { name="lax"; version="1.2.0"; sha256="0v05088a3hfmb2m6mzc6m7nibiq4qs5j052pnigyqkadf8mcyvjq"; depends=[chandwich numDeriv revdbayes sandwich]; }; layer = derive2 { name="layer"; version="0.0.1"; sha256="0mmijkk4ppbmhlp6ah88a9v3iwdd9j6yw7ff8kk7p1iw63qkiyxi"; depends=[dplyr ggnewscale ggplot2 raster scico sf stars]; }; - lazy = derive2 { name="lazy"; version="1.2-16"; sha256="1psh3sng1pm23pjwy7iszb21ys7d29ry34ymvpgxj6zdhywwi5n7"; depends=[]; }; + lazy = derive2 { name="lazy"; version="1.2-17"; sha256="0w1kkkwx1cw619zgd2c913wihwbxicl0lv78wwpp2832mhb15gr7"; depends=[]; }; lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; }; lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; }; lazyarray = derive2 { name="lazyarray"; version="1.1.0"; sha256="1bj1a8ab2479cl3d15h9f1fr1hh5d1p3sxpq8y84yzw0rrsxcldd"; depends=[fstcore R6 Rcpp yaml]; }; @@ -11686,6 +11705,7 @@ in with self; { lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.7"; sha256="1hjlcl57aazcm5hgjiwmi116rk13z2gr65mpgcvyc0p9xih8bvdf"; depends=[ggplot2 shiny trekcolors]; }; lcc = derive2 { name="lcc"; version="1.1.3"; sha256="0hbv0nv421ldk10b4qr8dq7ww4w1342sl3s8gw0slfigxbbxv4bh"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; }; + lcda = derive2 { name="lcda"; version="0.3.1"; sha256="0zd0692qspya0ynh5722pbn9mpyf48474pm10dzg4qhl3k4rmmsh"; depends=[poLCA]; }; lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; lcmm = derive2 { name="lcmm"; version="1.9.5"; sha256="0c88hy8bqkf2h8a6q06l5sk294g68hkwniv3dv6c4nf9dazvzi7n"; depends=[mvtnorm nlme randtoolbox survival]; }; @@ -11715,7 +11735,7 @@ in with self; { leafem = derive2 { name="leafem"; version="0.1.6"; sha256="0ml110rva6ca8ycy0mrivq3wsj0dvyi5f62i92948r7mk6kf0l6a"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; leaflegend = derive2 { name="leaflegend"; version="0.6.1"; sha256="1wby363xbl8kc47pn5057gl812kazyi892067928ikyxq81lxqgl"; depends=[base64enc htmltools htmlwidgets leaflet]; }; - leaflet = derive2 { name="leaflet"; version="2.1.0"; sha256="0i2ziy3zmya3i0v4ma0b1ymw4mds7di0xjirs452n20z8l31lhhs"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leaflet = derive2 { name="leaflet"; version="2.1.1"; sha256="0xsng9n08i1w7qj4hbi706m6d8jm9ixrnwq5xac2s3csfm1s1xij"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.1.0"; sha256="138d2ajma3fkz7nsh50z4gw5zaflas39gsy7k5l120hxr7nmzgfk"; depends=[htmltools leaflet magrittr]; }; @@ -11743,7 +11763,7 @@ in with self; { ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; - lefko3 = derive2 { name="lefko3"; version="5.0.1"; sha256="1mf507kxl4g6jyvnvn5g8f8h3p18napgrbnvkmpnda8b564960m2"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; + lefko3 = derive2 { name="lefko3"; version="5.1.0"; sha256="0lyfaar4azmmsw0xv5bkbv111yfwk5gp9x278waliklw8hk5wyyp"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; legion = derive2 { name="legion"; version="0.1.1"; sha256="11gh281hf3nqzd3lbiqdp7y2qbpb933p92ix92hyg3rqai1fd0hb"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; @@ -11751,16 +11771,16 @@ in with self; { lehdr = derive2 { name="lehdr"; version="1.0.1"; sha256="0hg5a4w37wi6bqks2298ajsj8q6y3lvbx80wwg5364vnv7na3308"; depends=[dplyr glue httr rappdirs readr rlang stringr]; }; leiden = derive2 { name="leiden"; version="0.3.9"; sha256="03gaxpcab3a1av5lk8r5ll1s858gvyx5ndknci1sia96w1v44xc1"; depends=[igraph Matrix reticulate]; }; leidenAlg = derive2 { name="leidenAlg"; version="1.0.2"; sha256="04n2sfz2s6jvls9i6x5ka5nday2ah6j2npwksh1dqwjib8dsqnsf"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; - leidenbase = derive2 { name="leidenbase"; version="0.1.8"; sha256="0i8s9glgqffqiiriwcvmv6zlm83wbgkwwsd6wdkw7b7ladyzmhlf"; depends=[igraph]; }; + leidenbase = derive2 { name="leidenbase"; version="0.1.11"; sha256="1ahjbpr6snxp5x4ik3lpspzgw7l7y9abpswsl0mkvx4jq5dw69rn"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemna = derive2 { name="lemna"; version="0.9.1"; sha256="0aamkqcjw8n9mly8a7m1s1wfi6j5mx2kbbxfn9vbb21b9pqi2jl5"; depends=[deSolve ggplot2 gridExtra]; }; + lemna = derive2 { name="lemna"; version="0.9.2"; sha256="0pmhapdps9hxkixs3qiq6gipsm7r7f3xvz8iazzkia3lr02f653f"; depends=[deSolve ggplot2 gridExtra]; }; lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="4.1.6"; sha256="0b62cyvq40fx0kd829c58nwmpz2p0qdvqrc9ndynalrph6l183kx"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.1.7"; sha256="14sfjfcxrr3x5fi5h2pacxs108zja5ywgb377fxgbrh2blygd6bs"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11784,7 +11804,7 @@ in with self; { lgrdata = derive2 { name="lgrdata"; version="0.1.1"; sha256="0h1crdhqfp6hzx30lp0w015scf2566hhrl2i7mkxy868rkl3aig9"; depends=[]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; - lhs = derive2 { name="lhs"; version="1.1.4"; sha256="1dim6pw2vjvsk269dff5bzpnyh9rp4qa9gj8y61bd31384q5c92c"; depends=[Rcpp]; }; + lhs = derive2 { name="lhs"; version="1.1.5"; sha256="0fb3bc3s5pbwg92qkjbg7v8ah36wm6qs05vf098hwjakr7f6yg3s"; depends=[Rcpp]; }; liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; }; liayson = derive2 { name="liayson"; version="1.0.4"; sha256="0xxl2l24km563n649kxzr15q0f6ks7l5yab3ig229s50i6sbn8nd"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libbib = derive2 { name="libbib"; version="1.6.2"; sha256="1d6d4fc9bpj8lkkblqcccdcsf21136vdr38kzy91259z3525gvcg"; depends=[curl data_table pbapply stringr xml2]; }; @@ -11819,7 +11839,7 @@ in with self; { limSolve = derive2 { name="limSolve"; version="1.5.6"; sha256="1829rd2cnd8qj80z9a7sgc7gx4sf3kvl5g6d2a0lqqw30f9sjzmr"; depends=[lpSolve MASS quadprog]; }; lime = derive2 { name="lime"; version="0.5.2"; sha256="03b88s82f0386c44j3z74dwp9f765wx9n1ahrjpy0s2j0pfa5z09"; depends=[assertthat ggplot2 glmnet gower Matrix Rcpp RcppEigen stringi]; }; liminal = derive2 { name="liminal"; version="0.1.2"; sha256="1ka16fm0gzhpydlk5pjf1vjcb7ygx1d3iv4z8cs6ywzrq4bb5r61"; depends=[dplyr jsonlite matrixStats miniUI rlang shiny tourr vegawidget]; }; - limonaid = derive2 { name="limonaid"; version="0.1.1"; sha256="0zch942aqxznxs1fghnxxxi5j700xfxnj2xn968nmnlnvayp8hhs"; depends=[httr jsonlite R6]; }; + limonaid = derive2 { name="limonaid"; version="0.1.3"; sha256="0z9nqnxmdy7wjv16rfk2lzvy1p4x77g9fwdjg4cfl4gdzpr3389r"; depends=[httr jsonlite R6]; }; limorhyde = derive2 { name="limorhyde"; version="1.0.1"; sha256="0ksz8chs5v7qss5yf24zcpszi6v0ylbn98zaxy7mz62qfx5i441g"; depends=[pbs]; }; limorhyde2 = derive2 { name="limorhyde2"; version="0.0.7"; sha256="06w3yf391gzaz0rssbl8jp3n9jmywwkmaxbf8mqxds5zy94f4bry"; depends=[abind ashr checkmate data_table DESeq2 foreach HDInterval iterators limma mashr pbs zeallot]; }; lin_eval = derive2 { name="lin.eval"; version="0.1.2"; sha256="05saxzzwh3gs6a4ii63n5kjm06p399xkyrjnqvn9f164322p7pwb"; depends=[broom]; }; @@ -11888,13 +11908,14 @@ in with self; { lmSubsets = derive2 { name="lmSubsets"; version="0.5-2"; sha256="1afdpcp3qiiprzc47cbckf49jd3f8ip81441ghgx0kfx54d1m305"; depends=[]; }; lmboot = derive2 { name="lmboot"; version="0.0.1"; sha256="1v7a3vlv0187mpg3y3pj7f3pbk1v5n6amw732chy10vdw5nmfkwd"; depends=[evd]; }; lmds = derive2 { name="lmds"; version="0.1.0"; sha256="130azb0nc2wwxv0qi8v5s4rd02p9lc92zwn634pv7b8awbw81i65"; depends=[assertthat dynutils irlba Matrix]; }; - lme4 = derive2 { name="lme4"; version="1.1-28"; sha256="03nw76bfyas6cdm9chyxqm5ks6r0qklf2fdy7h4pqrqss325x1fi"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-29"; sha256="09p836an3pap7vdbhf1zkl0a7wc63ax2dc8mjrd6lw64ikj7vnc3"; depends=[boot lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeInfo = derive2 { name="lmeInfo"; version="0.1.3"; sha256="1y75dv90jj8jzz4z4iixbv7ipbdx9f7wrjbjj46a8wjiidj1l5zw"; depends=[nlme]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; + lmeresampler = derive2 { name="lmeresampler"; version="0.2.1"; sha256="052b249zz9p79197qaaig9ynn5jph8kr945l4kk2vkj8h1j60sy8"; depends=[dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod tidyr]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; lmls = derive2 { name="lmls"; version="0.1.0"; sha256="0gv7mawdpcqvvf3f61aa1l0yi32z9bs41i36ggn1nwga837g33k3"; depends=[generics]; }; lmm = derive2 { name="lmm"; version="1.3"; sha256="13b5rvdbzljir1fn4zxv2lshbga64vwzn6884izif9v5dkd5b29j"; depends=[]; }; @@ -11907,7 +11928,7 @@ in with self; { lmomco = derive2 { name="lmomco"; version="2.3.7"; sha256="1pxk3hpmihhzyy3yawmi7d6fq0zfxliz8lwsbr9jr1kahhhbw982"; depends=[goftest Lmoments MASS]; }; lmreg = derive2 { name="lmreg"; version="1.2"; sha256="02a4nqqcfkjlq21mpk8abd4lj4ib2nps3ndf7zgmzygkd1z0df18"; depends=[MASS]; }; lmridge = derive2 { name="lmridge"; version="1.2.1"; sha256="1wxgsrigyjh22aa4m1z5qs4ac168g1g1g1jnj154490znfqdqip0"; depends=[]; }; - lmtest = derive2 { name="lmtest"; version="0.9-39"; sha256="126l0y7j2iy6g1w4zii1qkfcjq6wrnc3w2li0bz376smpryddy3i"; depends=[zoo]; }; + lmtest = derive2 { name="lmtest"; version="0.9-40"; sha256="15yr2kx08wy085bnziqmj1p6hf9mg3qp2a8465jk2df6di6hsh34"; depends=[zoo]; }; lmtp = derive2 { name="lmtp"; version="1.0.0"; sha256="04lmbb5j3ndjjdpb2yih0lxijzah6p45hv2jiva1l49p9jxwxw0i"; depends=[cli data_table future generics nnls origami progressr R6 SuperLearner]; }; lmvar = derive2 { name="lmvar"; version="1.5.2"; sha256="0wrny8yzk5y4mzpri6xv5wibbnbaxm0195lcbk5jrl5l5gs99bn6"; depends=[Matrix matrixcalc maxLik]; }; lmviz = derive2 { name="lmviz"; version="0.2.0"; sha256="0sl2k02m5bxkb4jg8y666ln0xxhr4dhsfz9hlp55p9smlhycl5s2"; depends=[car lmtest MASS mgcv rgl scatterplot3d shiny shinyjs]; }; @@ -11983,17 +12004,16 @@ in with self; { longmixr = derive2 { name="longmixr"; version="1.0.0"; sha256="03hh1zrpxqnal4j7rmlllzdhhmrvbdnvdr7rd955hlnkr9946p6c"; depends=[checkmate ConsensusClusterPlus flexmix StatMatch]; }; longpower = derive2 { name="longpower"; version="1.0.23"; sha256="0fxs3zaciyydl3w0a4d5pi8bbr8yhmh17wi0n39j073pacvzmqf6"; depends=[lme4 nlme]; }; longurl = derive2 { name="longurl"; version="0.3.3"; sha256="16r6gzyfy7aq8sqdzvc6wqinfp0yj46bsz4yg8n3jf0jdyx0zrc8"; depends=[httr]; }; - loo = derive2 { name="loo"; version="2.4.1"; sha256="0l2v8zpashqbnck3qx5lp1gqjcfphzky8mxyw5gfk9wk99mzn8dw"; depends=[checkmate matrixStats]; }; + loo = derive2 { name="loo"; version="2.5.1"; sha256="1wa5hxk7lkr88mway6b7xd5arrkkl2ldl9rf0v1nqwp8lia2ysl6"; depends=[checkmate matrixStats]; }; lookout = derive2 { name="lookout"; version="0.1.0"; sha256="16pny894diircf7w8b7kmmjpp8j864dj9iivh1n41aafjml4xk8g"; depends=[evd ggplot2 RANN TDAstats tidyr]; }; lookup = derive2 { name="lookup"; version="1.0"; sha256="0ncmj1df64088qv0g2c0wd8n43qmi15358mz289hakg6z4h0dmyi"; depends=[]; }; lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; - loon = derive2 { name="loon"; version="1.3.9"; sha256="1phvfgbv4wnrr3m2lbs5iaqsh9m69kf4wcvzvvnf5a23y3gpvw3d"; depends=[gridExtra]; }; + loon = derive2 { name="loon"; version="1.4.0"; sha256="0sgvzq06qk7id7h1hr0pa8hc02zp4r25ys3ifv7q9119c618q9an"; depends=[gridExtra]; }; loon_data = derive2 { name="loon.data"; version="0.1.3"; sha256="0sdld3yggjadykqaljf0p4cymy2c47yaxjphc6jwyragzpv4awzw"; depends=[]; }; loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.1"; sha256="19g90mfin902d5ywi5ivkhga0jwm7l7lswfs08slq3fmn1ibzpsv"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.2"; sha256="00h10jlwxbanwp9mwfjy66nx49d5258qb3m2s9asvkky6g2sghax"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; - loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lorentz = derive2 { name="lorentz"; version="1.0-5"; sha256="1py2s4x6vnlyyf5fnwbhws00dmf5qyzmx8wza337w3nzxkr6ns6b"; depends=[emulator magic magrittr tensor]; }; @@ -12007,15 +12027,15 @@ in with self; { lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; lpdensity = derive2 { name="lpdensity"; version="2.3"; sha256="06wa6ngfzlicx8g336b2034r54zflfjlrfllr0wkf87sq84x936i"; depends=[ggplot2 MASS]; }; - lphom = derive2 { name="lphom"; version="0.3.0-14"; sha256="02s3a7a8n1c17c0rcq6knz3xddmfg41iahq2hpgqsm6d9502hybz"; depends=[lpSolve Rsymphony]; }; + lphom = derive2 { name="lphom"; version="0.3.1-1"; sha256="18scyg2rd30haawmnlxrkxvg6d8w9qqs7vj9cxvkg9flalsd8isg"; depends=[lpSolve]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; lpirfs = derive2 { name="lpirfs"; version="0.2.0"; sha256="1jn2faqj7szsfc0bicgym493y4cyncbg93rmcc3yv59b0rbxhc8m"; depends=[doParallel dplyr foreach ggplot2 ggpubr gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; lpme = derive2 { name="lpme"; version="1.1.2"; sha256="1b0w5ji8hjayni1sh5id193cmanf6n11p16fijkxln4sv4lks4aw"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; - lqmm = derive2 { name="lqmm"; version="1.5.6"; sha256="1s0x95c3gqznw9snr7fm2k41n6h6ay9rsk3bp88jcna1yn3f525i"; depends=[nlme SparseGrid]; }; - lqr = derive2 { name="lqr"; version="4.0"; sha256="1hv8zvpivmp55gsyk9wzhix4swkx5pp6h1kbiz5749irhfx7kpx0"; depends=[MomTrunc numDeriv quantreg spatstat_geom]; }; + lqmm = derive2 { name="lqmm"; version="1.5.8"; sha256="1ywiyq6k8fb1ffild1r0rglwc6a5sv1kqfqam28337bbxppdxv8i"; depends=[nlme SparseGrid]; }; + lqr = derive2 { name="lqr"; version="4.1"; sha256="10hylgr21jbcghwqhqw804d21vgagifmws5jv7siiadgs6f8kvwg"; depends=[MomTrunc numDeriv quantreg spatstat_geom]; }; lrd = derive2 { name="lrd"; version="0.1.0"; sha256="08g7i6y2isq2vq53byxh58908na4jghka20dznk19lc5mcfpkw97"; depends=[knitr]; }; lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; @@ -12049,7 +12069,7 @@ in with self; { ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; }; ltsk = derive2 { name="ltsk"; version="1.0.8"; sha256="1ykgz5cas924kmq9ak2j8vhr7gg9s458qarqkmyg9wdfj1srqi7p"; depends=[fields gstat sp]; }; ltsspca = derive2 { name="ltsspca"; version="0.1.0"; sha256="0hgl2zd8y01z8mhnqg1hlv1l7klpwhwk7q8b99pw9vgnh1f2gnfs"; depends=[pracma Rcpp RcppArmadillo]; }; - ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; }; + ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.3"; sha256="0f2ycgjdw9z9m730wh3k362aq71mwmxhnsxhcjxhj8c4lknr50br"; depends=[]; }; lubridate = derive2 { name="lubridate"; version="1.8.0"; sha256="199b00cql07gf3rf4hh5ba34amnk0ai40zhx73dq1mpkn7ynxml7"; depends=[cpp11 generics]; }; luca = derive2 { name="luca"; version="1.0-6"; sha256="0zrxrwpk7iblpysd4fbh50s5bmvd5l1bzbd8rdyk06wby6bcs1rk"; depends=[genetics survival]; }; lucas = derive2 { name="lucas"; version="1.0"; sha256="1ws35f2pq2y7nnik40nj4qpz1d499gfc5isr1409pwy6r5knb78q"; depends=[DBI plyr rpostgis RPostgreSQL]; }; @@ -12104,7 +12124,7 @@ in with self; { mada = derive2 { name="mada"; version="0.5.10"; sha256="1hllv371dm307nkpld0aszjyxfgnajr7gb9zwh40pyzw4q4a2rqb"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; madgrad = derive2 { name="madgrad"; version="0.1.0"; sha256="0cxf1b57cl7qwax60wv4jvcac762ara2i18nb1fcjp954mwgwnlb"; depends=[rlang torch]; }; - maditr = derive2 { name="maditr"; version="0.8.2"; sha256="1nmg5pgz4pyck5f66dcrd4hb6v1fg45w4ki9sriz375iskv3as7h"; depends=[data_table magrittr]; }; + maditr = derive2 { name="maditr"; version="0.8.3"; sha256="108y240b92z5nrjp9rq5baaxncfv1g114garfv87vnwnz7bsd8c7"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.7"; sha256="0vcpydqnpmg9rvvzyjyqvd3qgs42n8cr9cafai51989v2w2bcf85"; depends=[expm Matrix matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; madrat = derive2 { name="madrat"; version="2.3.2"; sha256="06gd77r8h7c3sqcq2iapqvsjj41x7qj1gqv2rp0y50g00cg2625d"; depends=[digest igraph magclass Matrix stringi withr yaml]; }; @@ -12120,7 +12140,7 @@ in with self; { magickGUI = derive2 { name="magickGUI"; version="1.3.0"; sha256="114l5mga9x3vn9qqydyq1v75gqldh4p6m4i8ak0xw3v7p6wsf8gn"; depends=[magick]; }; magmaR = derive2 { name="magmaR"; version="1.0.2"; sha256="19jnzggjqnlv3gnc3zjfmphkwjy1y5xp6bgc2nnr6mwfs4rfxscn"; depends=[crul jsonlite]; }; magree = derive2 { name="magree"; version="1.1"; sha256="0q0v1mx4k1hry0l21611z9jx967l89xpjddvw2v1v9c3kl11kfi6"; depends=[]; }; - magrittr = derive2 { name="magrittr"; version="2.0.2"; sha256="19k3q76qlri459iyyfgn9gl0w9lnv9v604yhpbc94nx71l6zvrkv"; depends=[]; }; + magrittr = derive2 { name="magrittr"; version="2.0.3"; sha256="1ljmrrm36y31db5z4cl863ap8k3jcaxk0qzy3f0cn6iag4zzigx2"; depends=[]; }; maic = derive2 { name="maic"; version="0.1.3"; sha256="1s6rq3v0dk0fm1csq0w8bb52kldaimmsgprmcjj1il6pr2936d3a"; depends=[Hmisc matrixStats weights]; }; maicChecks = derive2 { name="maicChecks"; version="0.1.2"; sha256="1c2n8avrhx0lvw9hi5slymm49lzf37hbkqzkqy230aikgmpv0cpa"; depends=[data_table ggplot2 lpSolve quadprog tidyr]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; @@ -12131,7 +12151,7 @@ in with self; { makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; - makemyprior = derive2 { name="makemyprior"; version="1.0.1"; sha256="0lal0nklw0f9340gdrl2icp9qvcnjasx07a04zr3iw2rgaq5r48c"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; + makemyprior = derive2 { name="makemyprior"; version="1.1.0"; sha256="1h5v1n6b318j36w1c225wq8rdvr3dwsy421x43z0ff9ixidhylbv"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; makepipe = derive2 { name="makepipe"; version="0.1.0"; sha256="087lp7s70nx1zfs3mw4jk43miw4sc0gfd5faxqpnkgbpx01iaa51"; depends=[cli R6 visNetwork]; }; maketools = derive2 { name="maketools"; version="1.2.2"; sha256="1p98vg5404np5fbiqajznmiqah8lyfv2xf741wjfm2jqkki9nk40"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; @@ -12149,6 +12169,7 @@ in with self; { manifestoR = derive2 { name="manifestoR"; version="1.5.0"; sha256="0b4x4ampzmxcmlcyvl683rwynzwjg1cyx5zpamgy8027fh376zcp"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych purrr readr tibble tidyselect tm zoo]; }; manipulate = derive2 { name="manipulate"; version="1.0.1"; sha256="1klknqdfppi5lf6zbda3r2aqzsghabcsaxmvd3vw3cy3aa984zky"; depends=[]; }; manipulateWidget = derive2 { name="manipulateWidget"; version="0.11.1"; sha256="1dpgzmiv08afm57yxr017b014lfn9h3pa4w65prk5k3dgn6p4wsv"; depends=[base64enc codetools htmltools htmlwidgets knitr miniUI shiny shinyjs webshot]; }; + manydata = derive2 { name="manydata"; version="0.7.3"; sha256="1f4slfi36j5ydlw431z196g7yf9m52izjpgyrhi6f271bdb76bi0"; depends=[covr dplyr ggplot2 httr jsonlite lubridate messydates pkgdown progress purrr remotes rlang roxygen2 stringr tibble usethis]; }; manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; maotai = derive2 { name="maotai"; version="0.2.4"; sha256="178gsci0sdlqzdi18cnc7qvs008w5db50hd9ayzlvabsc0dk19z2"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; @@ -12165,6 +12186,7 @@ in with self; { mapedit = derive2 { name="mapedit"; version="0.6.0"; sha256="1ix0sjsqb6646xyi73am9ic97plw9y9p4pl8mrkpzvqzm0pxdhxx"; depends=[dplyr htmltools htmlwidgets jsonlite leafem leaflet leaflet_extras leafpm mapview miniUI raster scales sf shiny sp]; }; mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; + maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; @@ -12183,15 +12205,15 @@ in with self; { maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; maptools = derive2 { name="maptools"; version="1.1-3"; sha256="0ixvh4qbdjjl19ghgbb2r26yksya977q1yzs4yn5wshwm0763xph"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; - maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; + maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.10.0"; sha256="1amscd7h5c26r8w6bp68a855vy7y8h84z7dvcc8vz6jbcln915xm"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; - margaret = derive2 { name="margaret"; version="0.1.1"; sha256="0qbbbc3ca8ps6b2k3i3rbhz5yr2szrwypqhrjqlhs893nybh3nlq"; depends=[devtools dplyr igraph lubridate purrr readr rlang rvest scholar SnowballC stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.3.4"; sha256="0ph91ga6jfdsm480kcmyjlrxf44qxcaywq2fqdaw3md0m1hkkxrl"; depends=[checkmate generics insight]; }; + margaret = derive2 { name="margaret"; version="0.1.2"; sha256="0sjwz6310s1mph5n414h32ckhh2301glyr5pf7fhvz1rgzfc743c"; depends=[devtools dplyr igraph lubridate purrr readr rlang rvest scholar SnowballC stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.4.1"; sha256="1q35bzsr5h4j850dlhn624f3pwa1x88m1ch7c5p9j7cp4a5vzyf9"; depends=[checkmate generics insight]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; @@ -12213,10 +12235,12 @@ in with self; { maskRangeR = derive2 { name="maskRangeR"; version="1.0"; sha256="12g9cx7l2bwl3wzka11p73r6w47h4nma3rdlhm9kq1a69ig5cm68"; depends=[dismo dplyr e1071 gdalUtils lubridate magrittr maptools raster rgdal sp tidyverse virtualspecies]; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; + massiveGST = derive2 { name="massiveGST"; version="1.0"; sha256="1mq3w2sx3ifydcs3yx96jm769n1i58qkw7hbw3kam01g1f2f4ys3"; depends=[formattable igraph msigdbr visNetwork WriteXLS]; }; mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; - match2C = derive2 { name="match2C"; version="1.2.2"; sha256="0sacmxq9igvkn4qq1fzynbyiq13jj92k2gx42bbfnm4g8gjlhpch"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; + match2C = derive2 { name="match2C"; version="1.2.3"; sha256="1ccmva0qgks2r6ya39vvrk1dx8ixmqiy3p0iz8hxcg5qin2pfzgi"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.10"; sha256="1cbxgqx36f19lccd9qjrq3zq3ghqbfjb5pim40k2aykpqp6wmqba"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-2"; sha256="1jj5hzxiivqinkpddmkqdxgi83jm6blann9wgv4g8prn3lvp0i85"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.3"; sha256="1wr1faaixn5scx2c8g2jfvfm489k0ah9isza67gz0db8knja9nig"; depends=[Rcpp RcppArmadillo]; }; @@ -12225,14 +12249,14 @@ in with self; { matconv = derive2 { name="matconv"; version="0.4.2"; sha256="1iyy344p3fsfx3gw9kzr0x9zhsplba22fpzl1mhk10wvf99xiwb3"; depends=[]; }; materialmodifier = derive2 { name="materialmodifier"; version="1.1.0"; sha256="116d8pppibi4kfd4jx4pc80n036lj86fprjnakkv4m890nkbznjr"; depends=[downloader imager jpeg magrittr moments png readbitmap stringr]; }; mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; - mathpix = derive2 { name="mathpix"; version="0.4.0"; sha256="0wwagf8v7awgiyi8vrfay5m2pbl1czn62g5bkg037wwy0c68n8va"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; + mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; matlab2r = derive2 { name="matlab2r"; version="1.0.0"; sha256="0sg0llilxf3xfv4d9wskp6zh4b00sv7cf1xdc56icwj78sz2d7pk"; depends=[]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; matlib = derive2 { name="matlib"; version="0.9.5"; sha256="0m03zygd43r0z7cldiwsc91p1xyni6pdvwm8pz4jcg5bmqasfg0w"; depends=[car MASS rgl xtable]; }; matman = derive2 { name="matman"; version="1.1.3"; sha256="0mwxxqqlg6yydc06hrjqk5ly686s21w5i5z40axxwkmpzyz84sqv"; depends=[data_table dplyr DT forecast lubridate parsedate plotly shiny shinydashboard shinyWidgets tidyr tidyselect]; }; - matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; + matpow = derive2 { name="matpow"; version="0.1.2"; sha256="1gjrq9bs94xqyms6sfyxp00f0x2gv4dfqcsz29ficzgl4iapns95"; depends=[]; }; matricks = derive2 { name="matricks"; version="0.8.2"; sha256="0ik61jxd4hpw149dbbmis3wsfsim60mw9d0qjwh047qfg6sm1vsc"; depends=[ggplot2 Rcpp reshape2 rlang]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.0"; sha256="1n85ibx4r7xzm4yz954cg7qm9isma920bxfy6fmj58g4bms30skw"; depends=[mvtnorm]; }; @@ -12245,7 +12269,7 @@ in with self; { matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; }; matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.7"; sha256="0jicclzjil9yqlapzji23wm916aprv1fyad1qrn6ip7kap3m2kln"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; - matsbyname = derive2 { name="matsbyname"; version="0.4.25"; sha256="1rqha59w4kf10byz0p41r7iaw8zwhcg06jhm94na3mcxxbd9jqjk"; depends=[assertthat dplyr Hmisc magrittr purrr rlang stringi tibble]; }; + matsbyname = derive2 { name="matsbyname"; version="0.5.0"; sha256="1k1hzwhbj2ajk3qxddx328hhzm69dxw7b67rhp4ifdnwymbics4b"; depends=[assertthat dplyr lifecycle magrittr purrr RCLabels rlang tibble]; }; matsindf = derive2 { name="matsindf"; version="0.3.10"; sha256="13ja1sm1p4xmfc6nmiqw33gpiqpxy7ni2g4njx9b3f4vc8rn1kyx"; depends=[dplyr magrittr matsbyname purrr rlang tibble tidyr]; }; matuR = derive2 { name="matuR"; version="0.0.1.0"; sha256="01nxs4czzs1kcxk63nwr2gnvffmlnx3yfllrhi8khdkj498s6sx1"; depends=[dplyr ggplot2 ggrepel lubridate magrittr tidyr]; }; mau = derive2 { name="mau"; version="0.1.2"; sha256="1wgiai8f1kbjh9hfwv4m0kavd44ib5xb33p8m16zpawnw14m7sj5"; depends=[data_table ggplot2 gtools igraph RColorBrewer Rdpack stringr]; }; @@ -12260,7 +12284,7 @@ in with self; { maxnet = derive2 { name="maxnet"; version="0.1.4"; sha256="05l24dksdgb43dpi4py4qkh8j9ynrnsglydy3gph1b61ygnfa8gx"; depends=[glmnet]; }; maxnodf = derive2 { name="maxnodf"; version="1.0.0"; sha256="1czhy3177bb4a5rxi2s4j3c9xn9f0b2pbkdka1dzw6ga389wdwb3"; depends=[Rcpp]; }; maxstat = derive2 { name="maxstat"; version="0.7-25"; sha256="114z1rwxwvk05ijjhdppzm148n1h192fp0w12ky10zkrhf6kphbg"; depends=[exactRankTests mvtnorm]; }; - maybe = derive2 { name="maybe"; version="0.2.0"; sha256="1nr7ivz9d5rpkxha89na8wgy7ds2v1n3pmjzxq5qdpfjfaphp84z"; depends=[]; }; + maybe = derive2 { name="maybe"; version="0.2.1"; sha256="07h8q656yjp58zl9xzks6jh77yhzszc3kggmlnj737ldla4d06n0"; depends=[magrittr]; }; mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; }; mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; }; mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; @@ -12317,6 +12341,7 @@ in with self; { mcmcse = derive2 { name="mcmcse"; version="1.5-0"; sha256="0qvlkv7j35h2lxdzhbsbsrf1cgsbgf4in7lxgwmx7vs85k10v0ja"; depends=[ellipse fftwtools Rcpp RcppArmadillo testthat]; }; mco = derive2 { name="mco"; version="1.15.6"; sha256="10h5d2lw6ybyva44nn5wml6v3ljpnv9m1b2lh36vg2cwrdwy5sqp"; depends=[]; }; mcompanion = derive2 { name="mcompanion"; version="0.5-3"; sha256="0051agyzbhrsxi9wpfpqcq98h7y25627s2czf30qxcq80m7xbhj0"; depends=[gbutils MASS Matrix Rdpack]; }; + mcount = derive2 { name="mcount"; version="1.0.0"; sha256="1l42d4xd2xyvgzvc8sj59qsnpfn2k8x57dqv4bx9yschm25hspdd"; depends=[bbmle]; }; mcp = derive2 { name="mcp"; version="0.3.2"; sha256="0vqn0lb7nc5hp2ls2h17ybldxrqj6l1hd4pk5pr4d22yyidlvx96"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; @@ -12351,14 +12376,14 @@ in with self; { mdw = derive2 { name="mdw"; version="2020.6-17"; sha256="0jjajgb1w3vx7vqn2z90xq39hvbcrrd2ky8p31g5absqwwm7lwpa"; depends=[kyotil MASS Matrix]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.56"; sha256="1bn75r5mf3pr1mr8384w175yabw75cynxlz2xh1gl2nar86k4m0x"; depends=[]; }; meanr = derive2 { name="meanr"; version="0.1-4"; sha256="1k5ygyxa5ixynvh1nfkgm4x9w0wk637m1jnrvkjhyq3jaqwwi859"; depends=[]; }; - meantables = derive2 { name="meantables"; version="0.1.0"; sha256="1007w4vjb472v15ny1h8dxdzxhddk4z5s5n77ayvcbwpc8nlzmk7"; depends=[dplyr rlang tibble]; }; + meantables = derive2 { name="meantables"; version="0.1.2"; sha256="1lg1a9dccb5xhbnmmgwkncj9w3g1zndh0ddjmascxhvzp9ckdvhg"; depends=[dplyr rlang stringr tibble]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurementProtocol = derive2 { name="measurementProtocol"; version="0.1.0"; sha256="0vyfkrlinwq2930xqwp1hb8g7g3q7h7yg6y0c8gkwgscrxswifhg"; depends=[assertthat cli httr jsonlite rappdirs]; }; measurements = derive2 { name="measurements"; version="1.4.0"; sha256="1kihavs9vgxwqjm9z1zjjngkmcwfsv8dg7nn9nrv5r06k5hv8bz6"; depends=[]; }; measures = derive2 { name="measures"; version="0.3"; sha256="0325hhncg9fhq28cfl1hk6rhcmzzcngsmnkmbn9ri3b4hwqlafal"; depends=[]; }; meboot = derive2 { name="meboot"; version="1.4-9.2"; sha256="0si2gmldkc5wjxaqqn9wmbvb7h6rkynbj11fjmgj4sdyv398x3jw"; depends=[dynlm hdrcde nlme tdigest]; }; mecor = derive2 { name="mecor"; version="1.0.0"; sha256="0jcqf6d7x16hs0mrnkawlkl9idd2g5zb6l6mqdavkdx43fhk38j4"; depends=[lme4 lmerTest numDeriv]; }; - medExtractR = derive2 { name="medExtractR"; version="0.3"; sha256="13ai3m8dqbl62f6smy8xlslyrhlkkgcy2xkhswi230sj60b58anh"; depends=[stringi stringr]; }; + medExtractR = derive2 { name="medExtractR"; version="0.4"; sha256="0wm3phmyn3ja8snpmnmagk11c44k8jxhc6by9zcmn0cqzf78h2mk"; depends=[stringi stringr]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; medfate = derive2 { name="medfate"; version="2.3.7"; sha256="1mxfvaamswm9zw1jbs9p94h0krrdw4xma4j8wa2w453pyikcpcxk"; depends=[ggplot2 meteoland Rcpp shiny]; }; medflex = derive2 { name="medflex"; version="0.6-7"; sha256="171vp0wmmmbz42xcwjy065vhvig49s4ac2hzawfww2mvpfj0g0fj"; depends=[boot car Matrix multcomp sandwich]; }; @@ -12371,7 +12396,6 @@ in with self; { medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; meditate = derive2 { name="meditate"; version="0.1.3"; sha256="02mgnbxlvi73zpnghlcx89jvri8144cf0bzq0hrbhh2nq2c1sdjg"; depends=[audio checkmate deldir wesanderson]; }; meditations = derive2 { name="meditations"; version="1.0.1"; sha256="0wnx3zadpngfch0sb0ifqvsmzl613639f1yazwsgvhk29mycx4ss"; depends=[]; }; - medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; }; medrxivr = derive2 { name="medrxivr"; version="0.0.5"; sha256="19gakl39n2jch84sv35jkk4g2c0k4h3ch3l3hz1w5p94mn2jlgqr"; depends=[bib2df curl data_table dplyr httr jsonlite lubridate progress purrr rlang stringr tibble vroom]; }; meerva = derive2 { name="meerva"; version="0.2-2"; sha256="1q1q6ydn1zwv8vif14qs2zgijhrdrnpx1ibd5afp2lb6yn8qd61i"; depends=[dplyr ggplot2 matrixcalc mvtnorm survival tidyr]; }; meetupapi = derive2 { name="meetupapi"; version="0.1.0"; sha256="1iaxpfzgn478np9cjwz0zalfy1p7jwabnwpfv31svw052i8bs9yl"; depends=[dplyr httr magrittr purrr]; }; @@ -12379,7 +12403,7 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-8"; sha256="09y8mhmcd82gz582lskvy0yx6vh6jjyxmh7i35041knqcjyp6lpc"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.3.0"; sha256="1fxzffz1rwlmp58i4a00707flnzch1kyhm9izvsqykwqx4rqdbca"; depends=[Rcpp RcppEigen RcppProgress]; }; + melt = derive2 { name="melt"; version="1.4.0"; sha256="0ffcdbrwk3008720iv589l01wgkzp49djv7vmj5bmpi96bdi3vy8"; depends=[Rcpp RcppEigen RcppProgress]; }; meltr = derive2 { name="meltr"; version="1.0.0"; sha256="0pcpgwk7if9f441z0vwh9g0ydhzkv3h4db433snkk5g4rfikx3ad"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.2"; sha256="0pj4z5nlb3ngx50r25d80z275rcf571imapq83yg0djp5lwzml0c"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.16"; sha256="16xm9hai1aqhrbpxln6az4qbwz3kk2izmq39nzpzjc3ardpq1ljr"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; @@ -12397,7 +12421,7 @@ in with self; { memor = derive2 { name="memor"; version="0.2.3"; sha256="1b3rjh121in7gi6khbhh2d1r0998a24ifcg6hpv8cdksl6lhm330"; depends=[knitr rmarkdown yaml]; }; memoria = derive2 { name="memoria"; version="1.0.0"; sha256="05nx6xkgf1mkn1ajjizwp66xhn7ddbvgdnmkdbcl4s7sq456vczw"; depends=[cowplot ggplot2 HH ranger stringr tidyr viridis viridisLite zoo]; }; memuse = derive2 { name="memuse"; version="4.2-1"; sha256="1wvwnjaaiv2647561z2b55dss35033ildx4kk8hzxfzgsjmdpsgm"; depends=[]; }; - merDeriv = derive2 { name="merDeriv"; version="0.2-3"; sha256="0f8g3n4hpkf58sryvirdjyjq0x06yqzhdkp9wp4cfwkfz7aawjsh"; depends=[lavaan lme4 lmeInfo Matrix nonnest2 numDeriv sandwich]; }; + merDeriv = derive2 { name="merDeriv"; version="0.2-4"; sha256="1piswi4l7ri3251shmanhygipmsw8zg701jqd0am1s76kj16l9cc"; depends=[lavaan lme4 Matrix nonnest2 numDeriv sandwich]; }; merTools = derive2 { name="merTools"; version="0.5.2"; sha256="1ka9aa3fgs1kqfqhi1sz6v6g5mbbbzxyb7c0n8s981g8d04vsi00"; depends=[abind arm blme broom_mixed dplyr foreach ggplot2 lme4 mvtnorm shiny]; }; mergeTrees = derive2 { name="mergeTrees"; version="0.1.3"; sha256="17aqgfd1ky5zq6i9s1djvdqjdd8lzkblf0cdw82i9mpzfhcz1fav"; depends=[Rcpp]; }; mergedblocks = derive2 { name="mergedblocks"; version="1.1.0"; sha256="0hgfyb99hdph4rx32072v40j3z56bwl8lvpxqmms783b997alaml"; depends=[randomizeR]; }; @@ -12433,8 +12457,8 @@ in with self; { metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.0"; sha256="13b0xbfm90g14grvpffnj7xhkgymzcayq1hh2vi0q1ah8bl8z504"; depends=[dplyr ellipsis forcats ggplot2 glue magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; - metacore = derive2 { name="metacore"; version="0.0.3"; sha256="19q88g9vcqwp5p42x6agsxhwmvlqgprdq3ydqvv9c41yp03bqypq"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect XML]; }; - metadat = derive2 { name="metadat"; version="1.0-0"; sha256="172bvdkmjvxx5cylb4wxbrhnmlzrc3ipfq7343ggypqln975lczd"; depends=[mathjaxr]; }; + metacore = derive2 { name="metacore"; version="0.0.4"; sha256="0yrhvzpaspskmmkl5hbifj2rqf1ilwx7paill4yggi1j84kmgvai"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect XML]; }; + metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.6"; sha256="0zg08lwnimnmfwac0d5kg8yhsl88gmn029dra18phy1jzkfnsx34"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.1"; sha256="0riqr2hhk4h0rm7m4njb2dd2f24jff7lzf9chh83sq4q3wldgpz5"; depends=[metadynminer misc3d Rcpp rgl]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; @@ -12460,7 +12484,7 @@ in with self; { metapost = derive2 { name="metapost"; version="1.0-6"; sha256="098f7sifg814mc4sb1nb4d6dlr1xms5hwyp08ksxg0i4ayf9jf3c"; depends=[gridBezier]; }; metapower = derive2 { name="metapower"; version="0.2.2"; sha256="1r6mmdxxi83isjjyfzblwpzfgqdmfhbqmq49zm2b4jd0zvc0lfcx"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang testthat tidyr]; }; metaprotr = derive2 { name="metaprotr"; version="1.2.2"; sha256="1iz5aqd8ha0h19sa58s7xd4h26lbqp68dxy93pxnx9bj3bv615b3"; depends=[ade4 dendextend dplyr ggforce ggrepel reshape2 stringr tidyverse]; }; - metarep = derive2 { name="metarep"; version="1.0.1"; sha256="0jnxx11jxj63ry0bkjlh9g2x2pr2qi24nql99iibz2ckbx8344p3"; depends=[meta]; }; + metarep = derive2 { name="metarep"; version="1.1"; sha256="0430nc3bqznrbf4gr37jfpihyx6psip9mlcxrx2lwfajfijy46w4"; depends=[meta]; }; metasens = derive2 { name="metasens"; version="1.0-1"; sha256="10ii6q1f9064j3jm9rm1ffm2mzpjlqnqhhvpp27s27i6r9jbma3w"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metathis = derive2 { name="metathis"; version="1.1.1"; sha256="0vac4sjlbz1cpdx0yc6q52mj174xay5j81cl5f4z2q9in0jy8f8b"; depends=[htmltools knitr magrittr purrr]; }; @@ -12479,6 +12503,7 @@ in with self; { methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; + metrix = derive2 { name="metrix"; version="1.0.0"; sha256="121g2vflwrrix1jjx26g4jxd6chdw6wghyp2adyvky45zckc9zi7"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.2.9"; sha256="1daah4wkn428gdlah5f96jyjs3z9c3sz8h7g9lil8p3i9q3crb2z"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; @@ -12497,7 +12522,7 @@ in with self; { mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.9"; sha256="09n18ypjdwcca38i2v636ijgnzwalv7wh55z82a0pfrbzabiynn1"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; - mgcv = derive2 { name="mgcv"; version="1.8-39"; sha256="15h1k9qyn8s8xy4x2361mj42vdq8ml5xskzqpkc45zj1a3gss6w4"; depends=[Matrix nlme]; }; + mgcv = derive2 { name="mgcv"; version="1.8-40"; sha256="19g4lzxjw931s68ni7ii81jwi25sf19qs8nlw8r94crvdhk2grnv"; depends=[Matrix nlme]; }; mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; }; mglasso = derive2 { name="mglasso"; version="0.1.1"; sha256="0h5npy9innq8dxyp1aq0agffrp29zrzfrcs8bzy43a60bhsil55l"; depends=[corpcor gridExtra Matrix R_utils reticulate]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; @@ -12512,7 +12537,7 @@ in with self; { mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; }; mhurdle = derive2 { name="mhurdle"; version="1.3-0"; sha256="1in07zk29z5fhrg75wl1fwbrsny4ihjnrqyh2kz1bd448p10f295"; depends=[Formula generics margins maxLik numDeriv prediction Rdpack survival truncreg]; }; mi = derive2 { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; }; - mi4p = derive2 { name="mi4p"; version="0.7"; sha256="1j877yp06jx0ygj26w9g3vffjsva89119g5dn57pfdy6slziamx0"; depends=[DAPAR emmeans foreach imp4p impute limma mice stringr]; }; + mi4p = derive2 { name="mi4p"; version="0.9"; sha256="08b2518a5jnvc2k8czfbkidl9rygkmkfzm1a64qlxnzr05m6v3l0"; depends=[emmeans foreach imp4p impute limma mice stringr]; }; miCoPTCM = derive2 { name="miCoPTCM"; version="1.1"; sha256="0bmb06rb53fq8ylcvz693akmz7nkjj50c6ypxsjbfp4crllpi5v9"; depends=[distr MASS nleqslv survival]; }; miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; }; miRNAss = derive2 { name="miRNAss"; version="1.5"; sha256="0j4yvd0j7r98m2msllszlzkzrx67a2z4xpx00zpq90hbr5jykxc4"; depends=[CORElearn Matrix Rcpp RSpectra]; }; @@ -12528,9 +12553,9 @@ in with self; { micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-8"; sha256="183hg4iap97is8cdaqxmnj9z8yybvpfnhg2kf85nfy1nl7b30xl2"; depends=[MASS miscTools systemfit]; }; micar = derive2 { name="micar"; version="1.1.2"; sha256="1zx2x6r4m0ihwhjd2n4rmk9da7p9bpadk65h7mbb0rgvwrspkzf8"; depends=[httr jsonlite]; }; mice = derive2 { name="mice"; version="3.14.0"; sha256="01fnfrr7adp29s5kic95r9q0rdznkz2pjmziyimnrqzyicyvfyzq"; depends=[broom cpp11 dplyr generics lattice Rcpp rlang tidyr withr]; }; - miceFast = derive2 { name="miceFast"; version="0.7.1"; sha256="1vlm19b9q6539c9rqa852kkva1j3cfwbxy2y9x8khb8pqk1w0bb7"; depends=[assertthat data_table dplyr ggplot2 magrittr Rcpp RcppArmadillo tidyr UpSetR]; }; + miceFast = derive2 { name="miceFast"; version="0.8.1"; sha256="01nxjh395wb1cs6h5drm9xy3ahxb4cybx7xhdjv6g5jqjv4229m6"; depends=[data_table Rcpp RcppArmadillo]; }; miceRanger = derive2 { name="miceRanger"; version="1.5.0"; sha256="0xm8fcvjf6pcfyyk1gnwfdac44q6b33i5byja9lqxy7vygbxmgxd"; depends=[corrplot crayon data_table DescTools FNN foreach ggplot2 ggpubr ranger]; }; - miceadds = derive2 { name="miceadds"; version="3.11-6"; sha256="1xh977xralyivmi57c11rpbbbx24dhzwfnjq4m55ikzv2b40678j"; depends=[mice mitools Rcpp RcppArmadillo]; }; + miceadds = derive2 { name="miceadds"; version="3.12-26"; sha256="1j9wqiq21w1bb9srzdp933i4h64svw743mrr3p2wrv6b70849pkz"; depends=[mice mitools Rcpp RcppArmadillo]; }; miceafter = derive2 { name="miceafter"; version="0.1.0"; sha256="0wiljd1dm1h7frhkf304i5sc8w5af9f6jhz3cd8f0r13n3z1r6yi"; depends=[car dplyr magrittr mice mitml mitools pROC purrr rlang rms stringr survival tibble tidyr]; }; micemd = derive2 { name="micemd"; version="1.8.0"; sha256="1vds5199bv3lgpn3qzra6gakvabyz6a83p55xjxgs9zk9chgf9yw"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; }; michelRodange = derive2 { name="michelRodange"; version="1.0.0"; sha256="1pykqb9hmpvn77k0vhfh36iyhamz9h5kpswq3ql31h9nknfy3ixi"; depends=[magrittr]; }; @@ -12544,7 +12569,7 @@ in with self; { microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; }; - microeco = derive2 { name="microeco"; version="0.6.5"; sha256="1syvssymnqzc8yvghc24ccb1gj490ly7mq1sgslvipvgd060jsid"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.7.1"; sha256="1z3j6q855ms5sq7f732m7b3xgxrag00n5msp88i3dvy0wpv9cbga"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; @@ -12553,7 +12578,7 @@ in with self; { microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; microseq = derive2 { name="microseq"; version="2.1.5"; sha256="1asdy0njy5xcykd88jxa8s5hkrh6kab566h3nf9i93yw1i6kmwip"; depends=[data_table dplyr Rcpp rlang stringr tibble]; }; microservices = derive2 { name="microservices"; version="0.1.2"; sha256="18inmqwdb2cz0i0q9rh7mm3bi0hg193kkipbzhgk0bk8i8gkdy84"; depends=[config desc dplyr glue purrr withr]; }; - microsimulation = derive2 { name="microsimulation"; version="1.3.6"; sha256="0qpsjw1mfmz0rgkgvv2r36jfsb2k9smxw4sxd32fwafaiqh1fcb6"; depends=[ascii BH Rcpp]; }; + microsimulation = derive2 { name="microsimulation"; version="1.3.7"; sha256="0cyhxkaqsryi0qg94kj129g8kww84qah2bxy78v83kvgc29ilwjm"; depends=[ascii BH Rcpp]; }; microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midas2 = derive2 { name="midas2"; version="0.1.0"; sha256="0k670ppbw12s4wgliiqgc5fr0sajr5axlkwa5i54hrappkh1vlb4"; depends=[coda MCMCpack R2jags]; }; @@ -12563,7 +12588,7 @@ in with self; { midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; migest = derive2 { name="migest"; version="2.0.2"; sha256="14gfslx3fpqw8170qkwf1155q3936m8kmwdqc8vqyli5nafbjf9w"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="0.8.13"; sha256="0k0fdhnk0kpm2wd5yrf1djc16anf6inwrzxipwwwrqpwvr7zqny9"; depends=[concaveman dplyr ggdendro ggforce ggplot2 ggraph gridExtra igraph magrittr network oaqc purrr RColorBrewer readxl rlang sna stringr tibble tidygraph tidyr]; }; + migraph = derive2 { name="migraph"; version="0.9.2"; sha256="1829lya4hl3fnfs69vzqxnshlqazhl8ri2s9w5aq9hd9ly7rbq28"; depends=[concaveman dplyr furrr future generics ggdendro ggforce ggplot2 ggraph igraph network oaqc patchwork purrr rlang sna stringr tibble tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; @@ -12575,8 +12600,8 @@ in with self; { mimi = derive2 { name="mimi"; version="0.2.0"; sha256="1ig34qd37my74nmlv3jcfrj7cnd55alxpf2flf2sssk2ws1y56xh"; depends=[data_table doParallel FactoMineR foreach glmnet rARPACK softImpute]; }; mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; - minSNPs = derive2 { name="minSNPs"; version="0.0.1"; sha256="0kj3kalr11c4jab9b5w0i2w2z0dsdmm22szgfzyrc3y2w6jdhvjw"; depends=[BiocParallel]; }; - mind = derive2 { name="mind"; version="0.1.5"; sha256="104cya2g0fw4cg1ihmznhhwwrbmwbbck9zfwgr5snmmhs4q244dy"; depends=[data_table dplyr JWileymisc MASS Matrix qdap tm]; }; + minSNPs = derive2 { name="minSNPs"; version="0.0.2"; sha256="1wnhyqvhv17bghzy6ci0imxvnnga392h92kiqkhklbrg2aw1wipq"; depends=[BiocParallel]; }; + mind = derive2 { name="mind"; version="0.1.6"; sha256="1rcifsjsh2snas3phkr19gvydknkgx0panh8wdb82q8p3v0pmyv5"; depends=[data_table dplyr JWileymisc MASS Matrix qdap tm]; }; mindr = derive2 { name="mindr"; version="1.3.2"; sha256="0nv3wripimpbi8zf1h8fkj80ibrzava36kcai9f1gl8frincafr9"; depends=[htmlwidgets knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; @@ -12597,8 +12622,8 @@ in with self; { minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.1.0"; sha256="014mqn9f25hgzrvyh46axhgak8h945asdslyflf99w0pdl6xl22x"; depends=[nanonext]; }; - mirt = derive2 { name="mirt"; version="1.35.1"; sha256="0gmssa6cx2rdphq6v5d3jhxrjkhc4sngsp7bj3szaj3xkd4px2vq"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv Rcpp RcppArmadillo vegan]; }; + mirai = derive2 { name="mirai"; version="0.2.0"; sha256="0an1i3gymgiyhhfkzfhxnmdib2pna8wgjsgxvsp3a1lv0lhs7k58"; depends=[nanonext]; }; + mirt = derive2 { name="mirt"; version="1.36.1"; sha256="1fw5w6yv70nfb38w3059fcclgmsddmvx99w4baca6jarxgsa05aj"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12"; sha256="0pi6xwvia0njkmdpvr8bbp7ha05rcazw3qbva9gf518ffwvda9gy"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; mirtsvd = derive2 { name="mirtsvd"; version="1.0"; sha256="0c06dpg0jr15hmk03s96fyp2rb6z4svihjzfs316nkl3dd03ami1"; depends=[GPArotation mirtjml]; }; @@ -12613,7 +12638,7 @@ in with self; { miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; miselect = derive2 { name="miselect"; version="0.9.0"; sha256="0dfqni7r5zwdvwmrmvqhycmxhazivz6vnz2ccjy0hyfad29g0v7s"; depends=[]; }; - mispitools = derive2 { name="mispitools"; version="0.1.9"; sha256="1p9w742jsp7dx104s29z5hk2c61m48kg52db7vifj5m85l5g0i5b"; depends=[DirichletReg dplyr forrel highcharter pedtools plotly tidyr tidyverse]; }; + mispitools = derive2 { name="mispitools"; version="0.2.1"; sha256="139wd1nqw4baivnmz3xh50h3k52bqs8nn8gpgda0cw8r82d5w7ws"; depends=[DirichletReg dplyr forrel highcharter pedtools plotly purrr tidyr tidyverse]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missCompare = derive2 { name="missCompare"; version="1.0.3"; sha256="03j69xw54d076znx19dplw4xznvgky90hxh3wgypg0g5pjg63y53"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; @@ -12671,7 +12696,7 @@ in with self; { mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; mizer = derive2 { name="mizer"; version="2.3.0.1"; sha256="1v82ydz6y5vh72q82mxwprymvil7cv6l8lj5y44llkixvhl1ib15"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; - mkin = derive2 { name="mkin"; version="1.0.5"; sha256="1nxdzll5v8551sgq0whqs2270lzvw923rl0kxvxbcwnsz27z26da"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; + mkin = derive2 { name="mkin"; version="1.1.0"; sha256="0ifi0gg64ckzxn09yg1yyd380acr1kpk2vr0jc1zkg6b32ls13q9"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6 saemix]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; @@ -12682,7 +12707,7 @@ in with self; { mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.2"; sha256="0zyfv8xy5yik0k3j0kf9r43xrvj528qzdb1v74sfi24vim6k6503"; depends=[]; }; mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; - mlegp = derive2 { name="mlegp"; version="3.1.8"; sha256="1sbdk3pybzhv2jycl56s6m86pp3qbfh8q0kmhn153130b84dzhga"; depends=[]; }; + mlegp = derive2 { name="mlegp"; version="3.1.9"; sha256="1cs0l04axp6f6f6m4h4kw8z4pasxgp5la3xib04wxzb2l4bnsab3"; depends=[]; }; mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; @@ -12695,7 +12720,6 @@ in with self; { mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; - mlmts = derive2 { name="mlmts"; version="1.0.0"; sha256="0vgrwcbhj4a3vlf9bddzfnicc6bsq0q2ryilq7kdv4yn58d5ggxx"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; mlpack = derive2 { name="mlpack"; version="3.4.2.1"; sha256="0fqpajcmqn9rijzjg7qj0zd2lik4xmhp5dmhbm3mdc9ssdg0axbr"; depends=[BH Rcpp RcppArmadillo RcppEnsmallen]; }; @@ -12703,8 +12727,8 @@ in with self; { mlr = derive2 { name="mlr"; version="2.19.0"; sha256="04v1br59ykzhzaiybjyyknbrc7ai5nl5l106b7482r49afscjj8i"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; mlr3 = derive2 { name="mlr3"; version="0.13.3"; sha256="010kl51zsgpc0qv63g1fg9kiw9m0wzqskcr14f1j8b9zi1lwi0bf"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.3"; sha256="0j56l8yi1c0sa3fsychrvv42rpip2d300yccps0bj636c5r7na64"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; - mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.2"; sha256="15sbxpp3lawh30dh3hznig12xp68p83p4rz6si6b6jjddcgsw3rq"; depends=[backports checkmate clue clusterCrit data_table mlr3 mlr3misc paradox R6]; }; - mlr3data = derive2 { name="mlr3data"; version="0.5.0"; sha256="1bck1rsnp4a9bkzyjrdxn1n12lkgkj0gwiwxrf9maj0l8x3kfpyw"; depends=[]; }; + mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.3"; sha256="034kbgkiysl66087ayy2mhk4xpigxz0i850msifb2ybd1wirvhcn"; depends=[backports checkmate clue clusterCrit data_table mlr3 mlr3misc paradox R6]; }; + mlr3data = derive2 { name="mlr3data"; version="0.6.0"; sha256="093rxpsdljk44cbg6x6ypmgvcb5v80kl92mzw1fdzsycgpp6k5xc"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.4.2"; sha256="17gahnzhraixxxmyinsh1pnrsfqy5kznw5ynfcwyrzpbinx4drih"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.5.0"; sha256="14qq42rj8r6304yb54bs4fjld202zqf2lwd0vrz8ak6sn6jn7dbs"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.6.1"; sha256="064rc35ij833pwcwg0xx600j8vbv762irr4cld7x356ijprd51ys"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; @@ -12718,16 +12742,16 @@ in with self; { mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.1.2"; sha256="1iwbrr9bmwk3bdf7qycn8kpfyqb6n8cracrjj2cafb3xj2r5vimn"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 terra]; }; mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.1"; sha256="1fws2jqjbjkbcww1nkl6pvj1gzwb3b52q8fykwf7mivgqf93ipzf"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.12.1"; sha256="0qly6bsfazqcf0a7c2a6k3wghczm8v1fxw9pxa76gpw51x2j2ld0"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.13.0"; sha256="0czlpi8bshn8cjq7pa1cyy7lpv35g4hv2nbyhc59zrcykzfv8afm"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.1.1"; sha256="14hsm00n3nk7x6521kccakkj0hpmw3c3yjl7dh6hjhggg9p6xkz9"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3verse = derive2 { name="mlr3verse"; version="0.2.4"; sha256="02bmdvkh76qzimkrkaqkmjxpzx1sds3wkawp8d62a3dqd5225f9s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3proba mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; - mlr3viz = derive2 { name="mlr3viz"; version="0.5.7"; sha256="1agl6s6i9l7mk8mrvmnz7csqsc77dwjnymlrqcy5vxddr2nfc47l"; depends=[checkmate data_table ggplot2 mlr3misc]; }; + mlr3viz = derive2 { name="mlr3viz"; version="0.5.8"; sha256="1hcxy1941ijv487lnrm8q9ixl545m2agqlv0x0sk213g8cpk57gb"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-3"; sha256="0vq163ca446l2sb3jbn8wmvj26zsrpz52b1w7d8xgb0jjf2jhp91"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5"; sha256="1f2ryd0mrlnnwxgwiria2sxqkb09kskfqjzsh32cbxh6ml4d3fbs"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlrintermbo = derive2 { name="mlrintermbo"; version="0.5.0"; sha256="1nyaqf6vkckdh7jb27iwv5dnvrh4bp0kkc5jzbqkyi8af11phg1l"; depends=[backports bbotk callr checkmate data_table lhs mlr3misc mlr3tuning paradox R6]; }; mlsbm = derive2 { name="mlsbm"; version="0.99.2"; sha256="1p6fflhjbbyzx51hb77aak1kdabjrmzd7b47vdcanhb0vd263aby"; depends=[Rcpp RcppArmadillo]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.2"; sha256="1icsssgi5xf420ajagr9nw0wgbxpfm7dsd5b7s77vyh5hsfzm1z3"; depends=[]; }; - mlt = derive2 { name="mlt"; version="1.4-0"; sha256="1xb3rmps998sfzlkkrk6k0q1b7gj01q1p4hr5anax66xhcj0529p"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; + mlt = derive2 { name="mlt"; version="1.4-1"; sha256="0bv1mvvjkyrhp00iry91lmz09rjz0dbrgpvg2m9pnx0vy4nbq1q8"; depends=[alabama basefun BB coneproj Matrix numDeriv sandwich survival variables]; }; mlt_docreg = derive2 { name="mlt.docreg"; version="1.1-3"; sha256="1ndx570ds8xagcp8d8adx64c2pv71kx3f7d640v638afjlcfc7h9"; depends=[eha flexsurv lattice mlt multcomp np numDeriv survival truncreg]; }; mltest = derive2 { name="mltest"; version="1.0.1"; sha256="14gyssfph088v936mpywmd4y8z9vdv0zk8638vlg23j8cf5j4al2"; depends=[]; }; mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; @@ -12766,7 +12790,7 @@ in with self; { mobr = derive2 { name="mobr"; version="2.0.2"; sha256="0dvsarxkjcjn3f40qkx5pdjpvq7hr6l5nvdz6adxlr1sdbadfcws"; depends=[dplyr egg geosphere ggplot2 pbapply plotrix purrr rlang scales tibble tidyr vctrs]; }; moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; }; mockery = derive2 { name="mockery"; version="0.4.3"; sha256="0sj77m9vgn4bzb8c8nq93xb9lm8ih8rcb7sfccripraibibg3jcz"; depends=[testthat]; }; - mockr = derive2 { name="mockr"; version="0.1"; sha256="0340v6189ivlzzriwk7yhf3v2k651x05fd1xrqfxxjgwhysaqj6z"; depends=[lazyeval]; }; + mockr = derive2 { name="mockr"; version="0.2.0"; sha256="0qxpyyg25ampjd6fjbhylzjfy15qng6w32yc17q5a2y6fz1scsy0"; depends=[rlang withr]; }; mockthat = derive2 { name="mockthat"; version="0.2.6"; sha256="12srlafk3ykzhrw65s1qzw3l566j285hi28rzrcpbgyr12720raa"; depends=[]; }; mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; @@ -12783,7 +12807,7 @@ in with self; { modelObj = derive2 { name="modelObj"; version="4.1"; sha256="0afws8vd7qj9m2ikj0ph1vp2rgr3v979hp3qjapgmln1cwglchlw"; depends=[]; }; modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; }; modelStudio = derive2 { name="modelStudio"; version="3.1.0"; sha256="0hd3x5jnj3s4b0hahxzjxfclhr92adf1xhs7hgc1k8bm9ngnqqxm"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; - modelbased = derive2 { name="modelbased"; version="0.7.2"; sha256="1akwp565ab26w32v3s1w1xi3baw5mrp46jjjv347w6nbbb7c1w4f"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; + modelbased = derive2 { name="modelbased"; version="0.8.0"; sha256="0gw7q0gh035kaax9qjp3i71mjhpiwyk6899v24f9v36lmzbrqb1a"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; modeldata = derive2 { name="modeldata"; version="0.1.1"; sha256="0jgrwf9k8p9j3ywg3yv2wzwsx3snlwm3dd9vfqwhlr7j63jg3cm4"; depends=[]; }; modeldb = derive2 { name="modeldb"; version="0.2.2"; sha256="14s8xh05qxv414xcnww1b3s0jqwnjb3l1dqf7q1qbw33ilwcmsfb"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; @@ -12794,7 +12818,7 @@ in with self; { modelr = derive2 { name="modelr"; version="0.1.8"; sha256="1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; modelsummary = derive2 { name="modelsummary"; version="0.9.6"; sha256="1nzahrqqfkc7zbksmlpyvnp7izpcyvck7nhg3nmr6q5paxm1g0f6"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; - modeltime = derive2 { name="modeltime"; version="1.1.1"; sha256="1m888hbnwvxmvbf4mk219vhiq2fglc6545j26hc1m73bfaxg73dv"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; + modeltime = derive2 { name="modeltime"; version="1.2.0"; sha256="0xy5srnxmpn7xkzyal90pa49bvpmlyvps9g7rfh914nnciwn6ikn"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.0"; sha256="01mi6pkjn97c77kyddz6xsyz11kchkdqy6672p8r96h0wy7530a1"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; modeltime_gluonts = derive2 { name="modeltime.gluonts"; version="0.1.0"; sha256="1nivqpdyr2s6q70bixna0a18gbhrf1r20vm0gj8b51idjignwpp7"; depends=[dplyr forcats fs glue magrittr modeltime parsnip purrr reticulate rlang stringr tibble tidyr timetk]; }; modeltime_h2o = derive2 { name="modeltime.h2o"; version="0.1.1"; sha256="0rg7ha1zy0a1fbwrljsglfnfgkl747hjga8xajlzyrczhrmh4vnk"; depends=[dplyr fs glue h2o magrittr modeltime parsnip purrr rlang stringr tibble tidyr timetk]; }; @@ -12824,15 +12848,16 @@ in with self; { molaR = derive2 { name="molaR"; version="4.5"; sha256="1mfb05cfg0jh60yxnmwhja6m38185r58kbz2ak0ikgaqd9lls07s"; depends=[alphahull rgl Rvcg]; }; molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; - mombf = derive2 { name="mombf"; version="3.0.7"; sha256="07z6y1w87svifvx6fz5z08mfgz2hasyzkcw6kkysjb1n11pynvp5"; depends=[mclust mgcv mvtnorm ncvreg Rcpp RcppArmadillo survival]; }; + mombf = derive2 { name="mombf"; version="3.1.3"; sha256="0za335manvaiv904246bwvw4m52pf6sfahxrha8kpsjcvzq8140m"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; momentfit = derive2 { name="momentfit"; version="0.2"; sha256="1xh3w3bwr2k4a79vma5cmz0l995nwbih0j7sgv3bjqdv4fn463d1"; depends=[sandwich]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momentuHMM = derive2 { name="momentuHMM"; version="1.5.4"; sha256="1hcgrc7nhccn5bw7mgxahhbc6i3dc607g1109b5ahv94yq2ghj09"; depends=[Brobdingnag CircStats crawl doParallel doRNG foreach MASS mvtnorm numDeriv Rcpp RcppArmadillo rlang sp]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; monaco = derive2 { name="monaco"; version="0.2.1"; sha256="1wwfwxv8064icdi6fhyrp3mrpv37x0cnnwdb5k1b88jfzb7j1hb6"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; + monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.4.1"; sha256="0y5g55nkmvgc5wd6lld1435g0szr0niphlnc96fm9pla4f6c4c0a"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.5.0"; sha256="1xy7ln2jgkb7mskcqa1l06pm66m3cm4n34ylmpq6jqsjla4b7drl"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; @@ -12841,15 +12866,16 @@ in with self; { monobinShiny = derive2 { name="monobinShiny"; version="0.1.0"; sha256="1ix376j39fby5571irf8i5bmz8i7nnvfzbvs5cv0k42dcgq93m0g"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monochromeR = derive2 { name="monochromeR"; version="0.1.0"; sha256="1zm5d4ipjlkvlhcqnq2cl5amv85n3iflb34915n12rjs68hbcjmd"; depends=[scales]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; - monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; + monomvn = derive2 { name="monomvn"; version="1.9-15"; sha256="1i2nj50wxw1i93sk3aljl2ahic7n2mwlnvmx25jkjks60pplr6gr"; depends=[lars MASS mvtnorm pls quadprog]; }; monoreg = derive2 { name="monoreg"; version="2.0"; sha256="059y5rj74b2rgkqmqqa4v74ih6knydj3kb2hr7hz4xj36cg01x54"; depends=[]; }; monotone = derive2 { name="monotone"; version="0.1.0"; sha256="1091xqa88gdp64b65610mfcknyz29kb980iqbvwnmlk12csszr1w"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; - moodleR = derive2 { name="moodleR"; version="0.3.2"; sha256="0c2p4p6payaq0r2mcw1kxhz5hg9aklbfny6j3ssjk0b05ngca5dv"; depends=[anytime cli config DBI dplyr ggplot2 ggwordcloud glue here lifecycle rlang RMariaDB RSQLite scales stringr tidytext]; }; + moodleR = derive2 { name="moodleR"; version="1.0.0"; sha256="19lw8zpf1pd57nnv1mnp1d5dnw0gp1hspl4lpra4s9rc51vg1agg"; depends=[anytime cli config DBI dplyr ggplot2 ggwordcloud glue lifecycle rlang RMariaDB RPostgres RSQLite scales stringr tidytext usethis]; }; moonBook = derive2 { name="moonBook"; version="0.3.1"; sha256="1ml4vvm0mvrprpyi0l50aw38brx18bk2qny4gybmkvlbakalz9bx"; depends=[crayon magrittr nortest sjmisc stringr survival]; }; mopac = derive2 { name="mopac"; version="0.1.0"; sha256="07ljy6rwicyrv20l7zyxq2lb7qqfpl5mpv834m2n5c4air7sy23m"; depends=[]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; + moranajp = derive2 { name="moranajp"; version="0.9.3"; sha256="0kq9rns7pkm26w4530is52l60mcj3ry2hnwd2n4kjfx4s2bm80yn"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; moreparty = derive2 { name="moreparty"; version="0.2.1"; sha256="0p30skq5x3rz3xbp2izq44v5c0byw7cw2han6bardah7xniz3w2d"; depends=[foreach ggplot2 iml MASS measures party partykit pdp plyr rlang varImp vip]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morph = derive2 { name="morph"; version="1.0.0"; sha256="1xaca0da8fcymbjiqxxdp7z13283xd93crxv74401dqpbqv0vai3"; depends=[igraph reshape2 rgl stringr]; }; @@ -12882,7 +12908,7 @@ in with self; { moveHMM = derive2 { name="moveHMM"; version="1.7"; sha256="031msh427hgjyr37imalr7smd79yqscw9xq5rjrixxc2w5qly9jj"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.10.5"; sha256="1lj22yr6v3vg795r72gkbhyabycppxbjsaldqiqgckhkdfh3lziw"; depends=[av cowplot curl ggplot2 gifski lubridate lwgeom magick magrittr move pbapply raster sf slippymath]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.3"; sha256="14a2iymn4j831xlh42z5qxmhnh7xpp5bxasgpkhnb3v0b5ldyilh"; depends=[move Rcpp]; }; - movecost = derive2 { name="movecost"; version="1.5"; sha256="0f80gpzghxnq80sl17zzpi3xj4gxgfiyx5jh1j01bngq1iy7m0r1"; depends=[chron elevatr gdistance maptools raster rgdal rgeos sp spatstat_geom]; }; + movecost = derive2 { name="movecost"; version="1.6"; sha256="05hq7k6axhz5vvy3hpw85w27bmm0s720nqzy43q529pc8mxp5vww"; depends=[chron elevatr gdistance maptools raster rgdal rgeos sp spatstat_geom]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.22"; sha256="0i4vyli3sr1lzrj0ayzsq55cpsv0xrwn216lgzmfyjr5n8r9aw7r"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; @@ -12891,34 +12917,34 @@ in with self; { mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; }; mplot = derive2 { name="mplot"; version="1.0.6"; sha256="15cmwk4lphxy5p3azy9lwhij76127h9g4g1j1sv59mbqvrqid0sk"; depends=[bestglm doParallel doRNG dplyr foreach ggplot2 glmnet googleVis leaps magrittr plyr reshape2 scales shiny shinydashboard tidyr]; }; - mpm = derive2 { name="mpm"; version="1.0-22"; sha256="0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk"; depends=[KernSmooth MASS]; }; + mpm = derive2 { name="mpm"; version="1.0-23"; sha256="1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj"; depends=[KernSmooth MASS]; }; mpmcorrelogram = derive2 { name="mpmcorrelogram"; version="0.1-4"; sha256="0gv9xswrfvndcjal0csab1w2cnl4rg8pznyxbz84b0qr95jg81ag"; depends=[vegan]; }; - mpmi = derive2 { name="mpmi"; version="0.43.1"; sha256="1lz7928vz52hs8dad9rj34hnkv8y0yj4mfiydwkrqvsl8avwc4qk"; depends=[KernSmooth]; }; + mpmi = derive2 { name="mpmi"; version="0.43.2"; sha256="1adfsrnigd46k7xm2brhq7afrh1x1i7s4mzn8iq2dnqikb8pl7pl"; depends=[KernSmooth]; }; mpoly = derive2 { name="mpoly"; version="1.1.1"; sha256="10is69ks22ka1cqw3xk0fvy4z3b2drm8lanqwj178qrzj7ipf7i0"; depends=[ggplot2 orthopolynom partitions plyr polynom stringi stringr tidyr]; }; mppR = derive2 { name="mppR"; version="1.3.0"; sha256="12fjb8q3yhhpsdb0wiv6bamw6a4igv2as9vqq6ac1gab454b9fxn"; depends=[ggplot2 igraph qtl]; }; mppa = derive2 { name="mppa"; version="1.0"; sha256="06v6vq2nfh4b407x2gyvcp5wbdrcnk3m8y58akapi66lj8xplcx4"; depends=[]; }; mpr = derive2 { name="mpr"; version="1.0.6"; sha256="155cjdcyvxnmqxx3zg2dvzk7av2jcn67lj2vdpd2ahbznax76ghk"; depends=[survival]; }; - mpspline2 = derive2 { name="mpspline2"; version="0.1.3"; sha256="0yadvnfsj1c9mm28v6501510dhcg77nzcvky32zmhaa21gwszcij"; depends=[]; }; - mpt = derive2 { name="mpt"; version="0.7-0"; sha256="1nwc3szl5g5cd39z7ydr91bvvg58gb7r5zbjbylp93yx3pr7bsjh"; depends=[]; }; + mpspline2 = derive2 { name="mpspline2"; version="0.1.6"; sha256="1zh53lxsy895lljxlyhas5xb9ln5q772h26yil7ydq6zlh4w8vr0"; depends=[]; }; + mpt = derive2 { name="mpt"; version="0.8-0"; sha256="02m92dn9y5q4ql7ydn01nn5irm82kknd2dqc0bcnxsn7kdbglnid"; depends=[]; }; mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; }; mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; }; - mrMLM = derive2 { name="mrMLM"; version="4.0.2"; sha256="0v2vmzylaqk836xqpyjy5cccnpsacyy2b334cay3pdlr8qdmrqky"; depends=[coin data_table doParallel foreach lars ncvreg Rcpp RcppEigen sampling sbl]; }; + mrMLM = derive2 { name="mrMLM"; version="5.0.1"; sha256="0z2vwvpc7yrxza3jy3x3mj7d3n10bfbq72rcsnrjrz2jkcbkwb8g"; depends=[BEDMatrix coin data_table doParallel foreach lars ncvreg Rcpp RcppEigen sampling sbl]; }; mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="4.0.2"; sha256="0ywxaw164czfgbnqfkh5zw06006clisbc780w2h4z71wfvj56dsi"; depends=[bigmemory coin data_table doParallel foreach lars mrMLM ncvreg Rcpp RcppEigen sampling sbl shiny shinyjs]; }; mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; mrbin = derive2 { name="mrbin"; version="1.6.3"; sha256="0w9m1mmvp6m3zhkxdr7fj96z143kq0qnc6kpg2ixn1sl4nzdfx0c"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; - mrds = derive2 { name="mrds"; version="2.2.5"; sha256="1659nzdykl4mgfgyniwnwrn1a0m6wiz7c02ygwpm90bnz8f4g5y2"; depends=[mgcv numDeriv optimx Rsolnp]; }; + mrds = derive2 { name="mrds"; version="2.2.6"; sha256="1xk8dr48gh3dqb1zx4ijd7z8dgkfs7lvp50y9irqdxax35cjd6f2"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.13"; sha256="177331j30n707mcl1ghxjc53xjs9qsal15kccc71b0rabkjdq2wv"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrfse = derive2 { name="mrfse"; version="0.2"; sha256="1dx21m54jsprlngj20q1bgvbw1bbm0sm8i01xanj68bx796ng14j"; depends=[]; }; - mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.0"; sha256="1qdaaa4zklsn9bwlkv654y5m2r9hj6rviv3ag5ibqk0d1h1l9kzk"; depends=[callr dplyr fst future future_apply mrgsolve]; }; + mrgsim_parallel = derive2 { name="mrgsim.parallel"; version="0.2.1"; sha256="074c47fkwy5n9x89dswi3ybnck1f0rlbyad6by32jyslw8bz76ln"; depends=[callr dplyr fst future future_apply mrgsolve]; }; mrgsim_sa = derive2 { name="mrgsim.sa"; version="0.1.0"; sha256="199m6ygwnw6fbld5fqsw1j5jz9x6l1ayrpsc0r51q4fr7nmmpfj2"; depends=[assertthat dplyr ggplot2 mrgsolve patchwork purrr rlang tibble tidyr tidyselect withr]; }; - mrgsolve = derive2 { name="mrgsolve"; version="1.0.0"; sha256="0k8cac0sslzs3d5nl55713dxbv3009fvzssyz7mli7s5hn0yyx3c"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; + mrgsolve = derive2 { name="mrgsolve"; version="1.0.3"; sha256="0xy35ihbzw51cdy3yqpg2v6dlah7rsriblf081f3m8abprys0r5i"; depends=[BH dplyr glue lifecycle magrittr Rcpp RcppArmadillo rlang tibble tidyselect]; }; mri = derive2 { name="mri"; version="1.0.1"; sha256="1dssq556kid6c3djp0s6v853cranv2wjs2c9521l5ykg5g33hfmv"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-2"; sha256="07b1b2k1ka43ikj2mhwnazw3ig7w10bf759fimxpksvk5k6wanx2"; depends=[lattice misc3d oro_nifti]; }; mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; @@ -12931,6 +12957,8 @@ in with self; { msaR = derive2 { name="msaR"; version="0.6.0"; sha256="12d6vql85d1mzcy889z7pbmldcwwmzijimcr9frm12ahmka81byx"; depends=[ape htmlwidgets]; }; msae = derive2 { name="msae"; version="0.1.4"; sha256="06i5qysar9g7q18wy9h39qn5xw89794kbd58y8bah4bs3j5c5m47"; depends=[magic]; }; msaeDB = derive2 { name="msaeDB"; version="0.2.1"; sha256="0ccvg41d28qjbknhsamw95nq8fdibmz03pwblddkqywfl5yarii3"; depends=[magic MASS]; }; + msaeHB = derive2 { name="msaeHB"; version="0.1.0"; sha256="1grmkr146csyim1lpgingjnp4km3sqlpzihln9cpkqaqhvl8rycj"; depends=[coda rjags]; }; + msaeOB = derive2 { name="msaeOB"; version="0.1.0"; sha256="05m6r5jk21l9d2j546h7vf8caic83nm0y55zfamr94z4q221486x"; depends=[abind magic MASS Matrix]; }; msaeRB = derive2 { name="msaeRB"; version="0.2.1"; sha256="0mpyirvaflmp6gc35kbz1rw5ydxxdgfji3j9c8hjrjqz6759birb"; depends=[abind magic MASS Matrix]; }; msaenet = derive2 { name="msaenet"; version="3.1"; sha256="067p97z54dwhxy0w4ihi8dddcbvglh8ssynbh29fl9jyxfwjr1ms"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; @@ -12949,7 +12977,7 @@ in with self; { msgr = derive2 { name="msgr"; version="1.1.2"; sha256="15s3d77xqczjydgcfx4jlsq408hgsm8yzqk5248v58vm6zy36mh0"; depends=[purrr rlang]; }; mshap = derive2 { name="mshap"; version="0.1.0"; sha256="1q01q1w5wsiynabsvd5vl5jffiyxrmyj4ad6b07zhja0ff6b2n9j"; depends=[dplyr forcats ggbeeswarm ggplot2 magrittr purrr rlang stringr tidyr tidyselect]; }; msig = derive2 { name="msig"; version="1.0"; sha256="0gqd0kqlzhvp9widgjxbi5rz75bx0rkbnwbagjmzfv49f8g7yh46"; depends=[crayon do dplyr httr jsonlite kableExtra plyr rvest set sqldf stringr tmcn xml2]; }; - msigdbr = derive2 { name="msigdbr"; version="7.4.1"; sha256="103m52av68pkjfh8f81qh6j3cs1mj1lg831ciwybr34cax767jr1"; depends=[babelgene dplyr magrittr rlang tibble tidyselect]; }; + msigdbr = derive2 { name="msigdbr"; version="7.5.1"; sha256="1jna9bkq0a7r6f8nhxziyiw75kfhsyh1rv7sx5d4551mvxxlhc6w"; depends=[babelgene dplyr magrittr rlang tibble tidyselect]; }; msir = derive2 { name="msir"; version="1.3.3"; sha256="1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84"; depends=[mclust]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.9"; sha256="08vhazswyxr3y1zb9y60mbg3bappzlizxml8s08p65mh82xxkz5f"; depends=[expm mvtnorm survival]; }; @@ -12985,7 +13013,6 @@ in with self; { muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; mully = derive2 { name="mully"; version="2.1.34"; sha256="1f9yc64hq5c2v473cayg9s66g4k5gf6znj5i3qhcp1l9266y88kp"; depends=[igraph randomcoloR rgl shape]; }; mulset = derive2 { name="mulset"; version="1.0.0"; sha256="0pigiy6hfiqh6x4zx6zqn3ykk36s3abzzyb67jdlf4jzc5zhrl9g"; depends=[digest gtools]; }; - multDM = derive2 { name="multDM"; version="1.1.3"; sha256="16bvr62lxmrq79z856iigwz5cjhk327x4hhd0cg3adgabqcz04yp"; depends=[MTS]; }; multIntTestFunc = derive2 { name="multIntTestFunc"; version="0.1.1"; sha256="1psbjgg0dqd4nbmyja1mx4v1w0jqqhc67p7wqf1ipm93llv8sv6f"; depends=[gsl pracma]; }; multbxxc = derive2 { name="multbxxc"; version="1.0.1"; sha256="1ip5awjc2ljpy6nsr4y42x0yg4n7lyaxp9kzfjvwp41k9lriz4gm"; depends=[Rcpp RcppArmadillo rmumps]; }; multcomp = derive2 { name="multcomp"; version="1.4-18"; sha256="01i8gjppyxl3xph1dw0kags8qbb7r06j91kk3lkqn5gzrxjmwyhh"; depends=[codetools mvtnorm sandwich survival TH_data]; }; @@ -13018,7 +13045,6 @@ in with self; { multidplyr = derive2 { name="multidplyr"; version="0.1.1"; sha256="1cc8p9l6nn6n3dvivqyn8pwj0wn2vz40jcbb38zkg109a4c06jbb"; depends=[callr crayon dplyr magrittr qs R6 rlang tibble tidyselect vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; - multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; multigraph = derive2 { name="multigraph"; version="0.96"; sha256="1vk57cgmm7nigv6zmd9amwm3gddfpadkjr9blhckfla25n54h7r8"; depends=[multiplex]; }; multigraphr = derive2 { name="multigraphr"; version="0.1.0"; sha256="018kwpphwkpm07by7pvrwp5wvrasnpaxbs67pdrbfxzc139d15q9"; depends=[]; }; @@ -13027,11 +13053,11 @@ in with self; { multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; + multilevelmod = derive2 { name="multilevelmod"; version="0.1.0"; sha256="1nqm072rsgdpwrad50k4ry1vjq5749x6a2nmfvmh4nds1zhrja6m"; depends=[dplyr lme4 parsnip purrr rlang tibble withr]; }; multilinguer = derive2 { name="multilinguer"; version="0.2.2"; sha256="1i8c3sz6h42nca13ycjkmsmjbg8lj1xhkvyga97lp2wgkrrywpwb"; depends=[askpass rappdirs sys usethis]; }; multimark = derive2 { name="multimark"; version="2.1.4"; sha256="1x194h1jzxm3va933vqqk0qdg7pgrc5hqwdd1bwh0sjavygwanqz"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; multimorbidity = derive2 { name="multimorbidity"; version="0.5.0"; sha256="1x4869pqckldx6g4zhawjbin03glkxzfszb4qiq7yy2xi444jkl0"; depends=[devtools dplyr lubridate magrittr rlang sqldf stringr tidyr tidyselect tidyverse]; }; - multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; multinet = derive2 { name="multinet"; version="4.0.1"; sha256="0j4hdw47vf5rkd4vqr6bs5740h17kvw7208a434q0ms2vlmm40cg"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; multinma = derive2 { name="multinma"; version="0.4.2"; sha256="128p2a20kcdkqv9zq4i9hiy9fyqasmrfz162yz00fmyxkp50g63a"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; @@ -13054,6 +13080,7 @@ in with self; { multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-10"; sha256="1a469mhskkk2gx0j14f38fn0wdbfygl3psb0mnp7ckznhmh4w2lg"; depends=[emulator mathjaxr mvtnorm]; }; multiverse = derive2 { name="multiverse"; version="0.5.0"; sha256="1mffmcbc5l4753dj7h9h82gf76xbigrbb5lbwjr5ycpcyzcpsldk"; depends=[berryFunctions collections dplyr evaluate formatR knitr magrittr purrr R6 rlang rstudioapi tibble tidyr tidyselect]; }; + multiversion = derive2 { name="multiversion"; version="0.3.6"; sha256="1gcr4p2kwyyi1skkq1b5ian0flfviyrhh14i66jajyc2qdxfqfic"; depends=[]; }; multiviewtest = derive2 { name="multiviewtest"; version="2.0.1"; sha256="1jnb9l9nqnciczgxy9k7fq66rycbq0gr4sjdc2ck274jisj5bbaq"; depends=[doParallel foreach irlba Matrix matrixStats mclust randnet]; }; multiwave = derive2 { name="multiwave"; version="1.4"; sha256="19581kjcyw86cnzhvhhpn997fixm811ggmvb8jkb3dsxg8vp60jc"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-6"; sha256="1y9cykarr2aysdrnyab5aklsrc5id5b58881q03lcb5kc385v3gv"; depends=[CMLS]; }; @@ -13087,11 +13114,10 @@ in with self; { mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.2.1"; sha256="01kss9dx4an1ir5zs46jypvhj8sdc8wcs00i1223ai09av4lcsgd"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; - mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[]; }; - mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; + mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; mvdalab = derive2 { name="mvdalab"; version="1.6"; sha256="0i4hhm9bkp13j8cy6fspdn619d00jh615njwr49rwzgjyj418k6l"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; - mvgb = derive2 { name="mvgb"; version="0.0.1"; sha256="0rp9z6zp2nl09aq1xxq08h23zb5pidxjq0byryf3vy72ldq7y72c"; depends=[mvtnorm]; }; + mvgb = derive2 { name="mvgb"; version="0.0.2"; sha256="06sk2izii94zcq0gjgrw71bam9scyvs745riaaxg2a88yzc3sl2h"; depends=[]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; mvmesh = derive2 { name="mvmesh"; version="1.6"; sha256="1y6p7xp9fv0xswjdc6py1xqlx1ys1iyr559s9wkyja4hzcpya2my"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; @@ -13106,6 +13132,7 @@ in with self; { mvord = derive2 { name="mvord"; version="1.1.1"; sha256="0flqdsjigv8c6ygiih17kp22yrbs2wqydadqi5ij145a6r8bpkml"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.1.1"; sha256="1ll6zsy8svcsb3h60p0z2zpbgn919j9w0mamsdvvzi87dyy4hars"; depends=[robustbase sgeostat]; }; mvp = derive2 { name="mvp"; version="1.0-12"; sha256="135v24hjg9zgnl6k27jvcgxflqhjrmdkp3p2nda3izfvlvxijr0h"; depends=[digest disordR magic magrittr mpoly partitions Rcpp]; }; + mvpd = derive2 { name="mvpd"; version="0.0.2"; sha256="0xrrsq3b96cgcapam62nz80xm6hfmi2z9gbjbwww0mki0rvfscha"; depends=[cubature libstableR Matrix matrixStats mvtnorm stabledist]; }; mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrsquared = derive2 { name="mvrsquared"; version="0.1.2"; sha256="1x9ck55b5fiakvbn2nr3h75ksawjaijm2bg1xqavncl3cvlfqahl"; depends=[Matrix Rcpp RcppArmadillo RcppThread]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; @@ -13113,7 +13140,6 @@ in with self; { mvtnorm = derive2 { name="mvtnorm"; version="1.1-3"; sha256="0j14q2bkc14v35s5k03sw44zsssrd2qjljlwzj014qxs74hk0kpz"; depends=[]; }; mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; - mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; mwcsr = derive2 { name="mwcsr"; version="0.1.2"; sha256="1s7l3id3yashmscdd1kdcw1i4agpd6z12c7wxj18h3g2c82s7ad6"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.2"; sha256="19zz5y5gz84a7qicaj3v2j6l558vr6w8lcy67b3kmkq64mnnirda"; depends=[]; }; @@ -13148,7 +13174,7 @@ in with self; { nametagger = derive2 { name="nametagger"; version="0.1.1"; sha256="17g8y7x83p1pkgj5hgildndchxsp70va25h93p7r1yjllm56zqv8"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; - nanonext = derive2 { name="nanonext"; version="0.2.0"; sha256="04r119v74i1wymhdyjjcdybjvd7i5fhx8n8zq233iq7rrszcr8cd"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="0.3.0"; sha256="1hs0rw9lz4yry39pcq4fp9h5kqk0apqhgwahc2ww3gkhshwkck60"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanostringr = derive2 { name="nanostringr"; version="0.2.0"; sha256="13rcc33zfqlx8m5bmr5hh87gp0g5wlg2cwlj1683kw9adj2y3fdf"; depends=[assertthat ccaPP dplyr epiR magrittr purrr rlang]; }; nanotime = derive2 { name="nanotime"; version="0.3.6"; sha256="1pv8hlw76n7qqrmw9lirjgg0zlp7ffy367ndca3sra8wn5f1lxfz"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; @@ -13159,7 +13185,7 @@ in with self; { nasapower = derive2 { name="nasapower"; version="4.0.6"; sha256="0pz0v4waipd52saq92fws1xlh3fcal1q4dpcdspnp78n6z3nsxjc"; depends=[crul jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; naspaclust = derive2 { name="naspaclust"; version="0.2.1"; sha256="1p4ilv2z5140h4kdix2w1v32vz1n8v33wq0fhc8n8mi7baknhd1i"; depends=[beepr rdist Rdpack stabledist]; }; - nat = derive2 { name="nat"; version="1.8.18"; sha256="0sbyd16109nbi20fk4fwjz0p9hva8pbn370a60wjwjgn9jd90b90"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; + nat = derive2 { name="nat"; version="1.8.19"; sha256="10w7y7n8kx34z6p0nhar60n9cjp9y69kh77zi9izkmafx0m9qn64"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; nat_nblast = derive2 { name="nat.nblast"; version="1.6.5"; sha256="0fp01rrvz7n84sdmfhi0wzd9mvg7wi682l4qg5dj82cm98v80l3p"; depends=[dendroextras nabor nat plyr rgl spam]; }; nat_templatebrains = derive2 { name="nat.templatebrains"; version="1.0"; sha256="0bjib2brsq389b1rlznhwd81y9awk9qz57s4z5ai45gnsc7cfcgw"; depends=[digest igraph memoise nat rappdirs rgl]; }; nat_utils = derive2 { name="nat.utils"; version="0.5.1"; sha256="12g87ar795xfbz7wljksb24x9hqvcirjr50y4mbpx1427r0l7clv"; depends=[]; }; @@ -13175,7 +13201,7 @@ in with self; { nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.3.2"; sha256="0yhmz177r1miain65vspclahhz8cg7638ldbpsw8ylgf7a60l0sg"; depends=[]; }; - nberwp = derive2 { name="nberwp"; version="1.1.0"; sha256="0wy3n8p16l7x2hf35k3r7apxm72k38nmc407vh883jg5fci41ljn"; depends=[]; }; + nberwp = derive2 { name="nberwp"; version="1.2.0"; sha256="0v1y51rmm0h3w0v5y97wprhdhyc14r4iprdpkmdh8q9ajj1ds1c0"; depends=[]; }; nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; nbody = derive2 { name="nbody"; version="1.31"; sha256="0a5lqpbmb4gqb4mgp9hqc2fz92x9aaiqfqas1xxry7jvjngby30n"; depends=[magicaxis Rcpp]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; @@ -13207,6 +13233,7 @@ in with self; { needs = derive2 { name="needs"; version="0.0.3"; sha256="16dkjpijz3rz7kd5ggxsdg55iwd42nll1vk6g5ix4xdbqrx6cp9x"; depends=[]; }; needy = derive2 { name="needy"; version="0.2"; sha256="1ixgpnwrg6ph1n5vy91qhl1mqirli9586nzkmfvzjrhdvrm0j5l0"; depends=[]; }; negenes = derive2 { name="negenes"; version="1.0-12"; sha256="0b82822vl86gni0pv5f6pjfzmks35i7q2rqkhgyb9z9c677g991q"; depends=[]; }; + negligible = derive2 { name="negligible"; version="0.1.0"; sha256="183rcrv7b33qglhqm2bl2whzwiwh6rikw9vsj03lgqjvjaa22s5h"; depends=[DescTools dplyr ggplot2 lavaan nptest WRS2]; }; neighbr = derive2 { name="neighbr"; version="1.0.3"; sha256="1rmglfjmx6bfd4w1cpx4rvp7hy2vqvcamy854h5dq0l3kwk4pjcm"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-12"; sha256="0ws2knrq3b3icv6fzimypzwvzvqf0sayi2ndhacn6lk4snms5pm3"; depends=[optimbase optimsimplex]; }; neo2R = derive2 { name="neo2R"; version="2.1.0"; sha256="1fhi74d4730pxrmv1p2gz8ylvnilxn4l837nha6ndyhy00xfgkk6"; depends=[base64enc jsonlite RCurl]; }; @@ -13216,7 +13243,7 @@ in with self; { neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; - neptune = derive2 { name="neptune"; version="0.2.1"; sha256="1lnrhld77rq3s01fx4168a9ixmyxinpc32m0yyvzz5wk7bkx928s"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; + neptune = derive2 { name="neptune"; version="0.2.2"; sha256="01ac0ph4jh6lcv5502xbzhka537bwiszvkyb06q18ls0b5pcgrar"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; nestfs = derive2 { name="nestfs"; version="1.0.1"; sha256="1y10plfiyv5ws4xpmwgvm77kp07525zv02rza08xm8qhyq4f64zc"; depends=[dgof pROC]; }; nestr = derive2 { name="nestr"; version="0.1.2"; sha256="0qgd1sl6x5y70r3l4vf0qqynlrkdyq7mmpb8mwjn7f1hjnym1gaj"; depends=[magrittr rlang tidyselect vctrs]; }; @@ -13235,7 +13262,7 @@ in with self; { netgwas = derive2 { name="netgwas"; version="1.13"; sha256="156axkl61z0s3zm8plkcc3s46x0881mqnk94azl3p0nphblhmhcv"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; }; netie = derive2 { name="netie"; version="1.0"; sha256="0ja59rfg576z8rbv073aaab32qazlrqhvyvxpssibwsvbfcrhklm"; depends=[]; }; netjack = derive2 { name="netjack"; version="1.2.0"; sha256="060ygb0kxi0gx1ya38cmf5hhyy6jkwq5519azdqhq5i324cwzzm7"; depends=[brainGraph ggplot2 igraph Rdpack]; }; - netmap = derive2 { name="netmap"; version="0.1.0"; sha256="07rrfvqmlp8srxam70ajwdwdm5bk49zhngsl1yzh8an303la6rfc"; depends=[ggnetwork igraph network rlang sf sna]; }; + netmap = derive2 { name="netmap"; version="0.1.1"; sha256="0cqfxpn3pcbh56a26azxzm896g1m0z289870gb79n5nz69wm7dci"; depends=[ggnetwork igraph network rlang sf sna]; }; netmeta = derive2 { name="netmeta"; version="2.1-0"; sha256="0m0jv0cmg6dkyssw4qk19fqqdqqdsrdq9q0sj8fdi9rr41kmvakx"; depends=[ggplot2 magic MASS meta metafor]; }; netmhc2pan = derive2 { name="netmhc2pan"; version="1.3.1"; sha256="0q98rar7iglwxmf1274wrjcr7kp544ayrjhd286x68jmf51cqyrg"; depends=[assertive devtools dplyr rappdirs readr seqinr stringr testit tibble]; }; netplot = derive2 { name="netplot"; version="0.1-1"; sha256="11s6gcxcwbnd5x3sb4ryi4ks1bsbf7ylgc0yrygv58ipisxb2780"; depends=[igraph network sna]; }; @@ -13249,12 +13276,13 @@ in with self; { network = derive2 { name="network"; version="1.17.1"; sha256="19q563v5xfkbmr0ws9nhqx4wrxkf9jsck51rqc8mm2gq2h03lg7w"; depends=[magrittr statnet_common tibble]; }; networkABC = derive2 { name="networkABC"; version="0.8-0"; sha256="1vbabnkc8yvrxzrnaxj2v92620q1922hbcqbf1z3lmar5dbkql7f"; depends=[network RColorBrewer sna]; }; networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; - networkDynamic = derive2 { name="networkDynamic"; version="0.11.0"; sha256="1lns4wnmkr0g4nnp9lbrzcgibvpm6rhgpbcligh24p77vjnwl8da"; depends=[network statnet_common]; }; + networkDynamic = derive2 { name="networkDynamic"; version="0.11.1"; sha256="0zvkqafv28shv8zv7vsirq2wyrlq0fz45r715358iwgd7zxc9fvv"; depends=[network statnet_common]; }; networkDynamicData = derive2 { name="networkDynamicData"; version="0.2.1"; sha256="176al8jp0gha6yzhyn5flmyackmmdnh1h8sasqrdcmba7ha7cya6"; depends=[network networkDynamic]; }; networkGen = derive2 { name="networkGen"; version="0.1.1"; sha256="1vnh5dajiaf47kx1sxyp744mlk3yvl4sxj380i3b3ic1wlgyd2h1"; depends=[igraph mgcv]; }; networkR = derive2 { name="networkR"; version="0.1.2"; sha256="07dq3syk0hr1kc2mqd70g0ih09hamd7rxxms60dyvnpm8978c1wz"; depends=[data_table fastmatch Matrix Rcpp RcppArmadillo]; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; }; + networkscaleup = derive2 { name="networkscaleup"; version="0.1-1"; sha256="02ywmmj95xlgdavs81m0gbzyfwf9ac2wrbfwq2kcxgc0la4aimvc"; depends=[BH LaplacesDemon Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; networktools = derive2 { name="networktools"; version="1.4.0"; sha256="0lc8cfz7sydqi43qvv35vync38ml4gsc79dq5yyqzs5my3lbj5df"; depends=[cocor eigenmodel ggplot2 gridExtra igraph IsingFit NetworkComparisonTest nnet psych qgraph R_utils RColorBrewer reshape2 smacof wordcloud]; }; networktree = derive2 { name="networktree"; version="1.0.1"; sha256="0hkrqpx7b6sxalw1qyrncck70mx6p5gr57mf558l5mlqi52v7hg0"; depends=[Formula gridBase Matrix mvtnorm partykit qgraph reshape2]; }; @@ -13277,16 +13305,16 @@ in with self; { newscatcheR = derive2 { name="newscatcheR"; version="0.1.0"; sha256="0rm91dfzfjhi51gk65gvq2z7aywg6y8ay3hrjnp6frlmyvh661sp"; depends=[tidyRSS]; }; newsmap = derive2 { name="newsmap"; version="0.7.4"; sha256="1k7jbfz3hrpy8z3zfn0gcm9fzmfiaf3qkx1m89c5q072zpdpiajn"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; - nfer = derive2 { name="nfer"; version="1.0.1"; sha256="1dbvadpfgwanfdc9kvm620r5nj7l9kvbbhfcg80z5jbdn38jgh3r"; depends=[]; }; + nfer = derive2 { name="nfer"; version="1.1.0"; sha256="0kl7yks8m7ylm3vlmffjy1fgjchf4pym49jgpnq9jbkysvvbxpb0"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.1"; sha256="11hk9446ckhg46dzkbvd12n6k02m6qx265spwqdm23xpncamjlkk"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.3.0"; sha256="1vg27m51q01m6rypaksr5dw7qg3i638dypm31v5gimbdkjmgs2j7"; depends=[cli curl dplyr fastrmodels furrr future glue janitor lifecycle mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; - nflplotR = derive2 { name="nflplotR"; version="1.0.0"; sha256="0jcj3jv7qsjn7nxs9rycqc039rcx69nznfv2adg4xv4ybw0s1q6s"; depends=[cli ggplot2 magick magrittr nflreadr rlang scales]; }; - nflreadr = derive2 { name="nflreadr"; version="1.1.3"; sha256="1wif90lngvpzj36s7r1frchi50qksbsjscy156n740x2f3by9zjx"; depends=[cachem cli curl data_table glue memoise qs rappdirs Rcpp RcppParallel rlang]; }; + nflplotR = derive2 { name="nflplotR"; version="1.0.1"; sha256="139cbhwb6g82sq479rpl12fy3hvl7j5klkqp4mgnhpx8xmangmka"; depends=[cli ggplot2 magick magrittr nflreadr rlang scales]; }; + nflreadr = derive2 { name="nflreadr"; version="1.2.0"; sha256="0drhc747m4fjvlkjzih1mw8c2vsr882lfg3747lzi4a0whc4rif5"; depends=[cachem cli curl data_table glue memoise qs rappdirs Rcpp RcppParallel rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.0.2"; sha256="061jd3mr06mxs5riwlph3a1hsk5jypws71jy9jzhhqnijdy96bki"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr progressr purrr readr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.1"; sha256="1miacjvfl3968m54d6b5qgs7y3w6qw49nw96qxdwb2175gwhbl51"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; - nftbart = derive2 { name="nftbart"; version="1.2"; sha256="18yca2qg6d2960yvnplf70a7kd61qhmp42rd3alhg901a8py6qk5"; depends=[nnet Rcpp survival]; }; + nftbart = derive2 { name="nftbart"; version="1.3"; sha256="0mg1ysl1mpb3l6j5sbvy3ln2abjrsqig5bqb716sham6p12szlip"; depends=[nnet Rcpp survival]; }; ngboostForecast = derive2 { name="ngboostForecast"; version="0.0.2"; sha256="1jh3acr2asc8ih7kv05z4n7ialvvbkg61w01n9avvvgjw9ifsf4x"; depends=[dplyr forecast magrittr R6 reticulate]; }; - ngram = derive2 { name="ngram"; version="3.2.0"; sha256="1g57md4s73qpxzqxr8sgzvbkx3y4zmw4hfq6zsysnw4h2dbqxm1l"; depends=[]; }; + ngram = derive2 { name="ngram"; version="3.2.1"; sha256="1zjp5gn82b733a0glqrpvm1rqmqk0apni9fbm0jszbnc3y9h478z"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.7.5"; sha256="1zs6ninvhz6lavxnp59105wy0n0j839ps6yaaz21s42xk11lfp1k"; depends=[cli dplyr ggplot2 httr lifecycle RCurl rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; @@ -13328,11 +13356,11 @@ in with self; { nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; - nlme = derive2 { name="nlme"; version="3.1-155"; sha256="0kzzpl63l298yy18x62ypgbhdw61fgm30lc4nlhjjhjj5220yfcz"; depends=[lattice]; }; + nlme = derive2 { name="nlme"; version="3.1-157"; sha256="0v6rw6d7mk1szi5bgs5m91k76hgwcb7r704xaypvlv6bkmra5wnx"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; nlmeVPC = derive2 { name="nlmeVPC"; version="2.2"; sha256="0dkj0l0rkml6nydg3k04dzcp17sn59p3hnaqmnqa0arbzv0rsq8i"; depends=[dplyr ggplot2 Hmisc magrittr optimx plyr quantreg Rcpp RcppArmadillo tidyr timeDate]; }; - nlmixr = derive2 { name="nlmixr"; version="2.0.6"; sha256="18vlqny31im7402h10y7hqq31bki8rxj0x2z0wazk865prpab5k9"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; }; + nlmixr = derive2 { name="nlmixr"; version="2.0.7"; sha256="1fqshr8y9rrkbnvcrpk0m12gimd1m0lrc2cl8x1x78hnhfs4dvlb"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; }; nlmm = derive2 { name="nlmm"; version="1.0.1"; sha256="0q5vz4xqdb510i26zbcq4djcribn7h477akh8f56nzjgq231vhcq"; depends=[BH HI lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; @@ -13355,7 +13383,7 @@ in with self; { nlstac = derive2 { name="nlstac"; version="0.1.0"; sha256="0ag9zzzcadgwa43j16ff30r7g8jfihkwi76shv43igp52a11jr72"; depends=[Deriv doParallel foreach stringr]; }; nlstools = derive2 { name="nlstools"; version="2.0-0"; sha256="07givljg4ynp56613bnyh5a6cf41h6ihsrwp073zwnxr0l9c5gqf"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; - nltm = derive2 { name="nltm"; version="1.4.2"; sha256="02f3rn5l1hfvjpymy7vljmh6iq9w1w96016kx75qw563zwhmp5kx"; depends=[survival]; }; + nltm = derive2 { name="nltm"; version="1.4.3"; sha256="0k4bydc9d5k9dd1yzrk9glj54drlqqd8p2ggx75jhyw5shyl6471"; depends=[survival]; }; nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="1.1.0"; sha256="1qjb5n1qr89rv2a5ay2p74cs3i6swkn8wllklgn57fnahb9pcrgi"; depends=[]; }; nmadb = derive2 { name="nmadb"; version="1.2.0"; sha256="17r5vc57ilhy6cfcqpfyp9nzzjaa5gc8qkgfn3y8sppqh1g1mi40"; depends=[devtools jsonlite RCurl readxl]; }; @@ -13406,7 +13434,7 @@ in with self; { noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; }; nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; - nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.11"; sha256="0p7lf6zs8wicfsh85wrbgngqa6a9dfkajz82ng98s2n6y0bdrxhs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; + nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.12"; sha256="0fdyr7a5pac40wrrn6frj0q8pn03dic5a2rls3zr85yj48mimyfs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; nonmem2R = derive2 { name="nonmem2R"; version="0.2.3"; sha256="1x8mq0wwzn3px41pjbzwmpd8wjfq581lwq4nkiva7pf1xzjpk923"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; nonmemica = derive2 { name="nonmemica"; version="0.9.7"; sha256="12760lvbifzakzq7wjzqavqicrp2pzyq333glmafm9v73lx97pa7"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6-1"; sha256="1ppwv5yad8v7qhjr4z5p5vl51ry3sxqbmg0ynkx11j67byggn6xf"; depends=[Rcpp]; }; @@ -13420,7 +13448,7 @@ in with self; { nord = derive2 { name="nord"; version="1.0.0"; sha256="1gisqca85vzbqq5hs5bgqjgrjyksxj176x97kv9vv6mwll8kijl9"; depends=[ggplot2]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; norgeo = derive2 { name="norgeo"; version="2.1.0"; sha256="1qvcv63pwbsprxaw3nb5qbsr7fwphf62c7fgd5lvjbnnwgqbmnx8"; depends=[data_table DBI httr jsonlite magrittr odbc progressr RSQLite vcr writexl]; }; - norm = derive2 { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf55997spgb6zd6pawy19rgw0byp1h"; depends=[]; }; + norm = derive2 { name="norm"; version="1.0-10.0"; sha256="1iqcsa7mj9ahnkbsri0cf2wlhh2bv86vwsh3iwihh42cywd7k123"; depends=[]; }; norm2 = derive2 { name="norm2"; version="2.0.4"; sha256="0ahz6x59k00pqalzjc3ajiby1ysmarjssga9amwh9vd6vmzzyfb7"; depends=[]; }; normalp = derive2 { name="normalp"; version="0.7.2"; sha256="0fqpz6v9v3xjmyh7mh2yvkjdn3v4d0nk93x7s0gj28kazl7137kz"; depends=[]; }; normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; @@ -13467,7 +13495,7 @@ in with self; { nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.1.1"; sha256="0xfsi6y4233gwslrh86chfpc71fdp5pfh4v9c9qcjqaib9hxvixn"; depends=[ks lubridate raster rgdal snow]; }; nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; - npreg = derive2 { name="npreg"; version="1.0-7"; sha256="1gr3nbzwa88favbfg9s3053s0jybblfbmhllfjc1a6p32s2p3yax"; depends=[]; }; + npreg = derive2 { name="npreg"; version="1.0-8"; sha256="10f8idrpwlid4zdzn6ydffzyblbcqg08bkjlpi1msfcgkrg8m9xh"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.4.0"; sha256="1vry64r3xms6xls6bqq918prjyhs5svhl2yjvq0jxycaaqw2sgyp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; @@ -13529,7 +13557,7 @@ in with self; { obAnalytics = derive2 { name="obAnalytics"; version="0.1.1"; sha256="1l4ld120qk0adycmvqrkzada10kb7z03lj2njzqagmacl1z8598f"; depends=[ggplot2 reshape2 zoo]; }; obfuscatoR = derive2 { name="obfuscatoR"; version="0.2.1"; sha256="1pnlbfsp5fjvhwn2yl495v38g1wjg5l4ry79i1a2jznq2l91hn4p"; depends=[crayon matrixStats readr Rfast stringr tibble]; }; objectProperties = derive2 { name="objectProperties"; version="0.6.7"; sha256="1gsxbps528kmg5md9q26yfjz7p50h0k81dpfwklvsh6x0mwmranb"; depends=[objectSignals]; }; - objectSignals = derive2 { name="objectSignals"; version="0.10.2"; sha256="1rcgfq1i3nz2q93vv4l069f3mli1c6fd5dhhhw1p7cc4sy81008w"; depends=[]; }; + objectSignals = derive2 { name="objectSignals"; version="0.10.3"; sha256="087hknxhw3zqxrzdazbqw9zxi01dvrzcgm6k1i7r231vvvm6nxid"; depends=[]; }; objectremover = derive2 { name="objectremover"; version="0.8.1"; sha256="0qywigwb6r5lzvw8ylgriwignk4ayfkvfnmc6cb1yxsg0hrc4hiv"; depends=[miniUI shiny]; }; obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; }; obliqueRSF = derive2 { name="obliqueRSF"; version="0.1.1"; sha256="1picy19mrgycfxpng5qqk7q5im3m2apx8w4jxmkslpmgg1c5q2ly"; depends=[data_table dplyr ggplot2 ggthemes glmnet missForest pec prodlim purrr Rcpp RcppArmadillo rlang scales survival tidyr]; }; @@ -13537,20 +13565,20 @@ in with self; { obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; - occCite = derive2 { name="occCite"; version="0.5.2"; sha256="0v0zjnjxd2swj5m1vaclajfrf9jgqyvpnfkzzcg7hjl6f870b368"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; + occCite = derive2 { name="occCite"; version="0.5.4"; sha256="1widn654zjdypsr7lc1gi9p9ad16yrj32m00nqnzcrq176g4f4pa"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; - oce = derive2 { name="oce"; version="1.6-1"; sha256="1w0pbhki3z9qwaq6qgq3l4wr77yhs6xpd5fxpckw9ciwbj62v4ci"; depends=[gsw Rcpp]; }; - oceanic = derive2 { name="oceanic"; version="0.1.2"; sha256="15pnq3sf1h75np3xjvi3yap76z4jcpj1djm6i6cn16dbdx5p9cv3"; depends=[broom ggplot2 maps rgdal rgeos sf sp spData]; }; + oce = derive2 { name="oce"; version="1.7-2"; sha256="0gdjq5iplccnqp90jhcn0dsji5cvxcgba7yq55x9f6pinvbcn9nv"; depends=[gsw Rcpp]; }; + oceanic = derive2 { name="oceanic"; version="0.1.3"; sha256="1bvi7v09b62x81bphpls99s8qjczzn8xxvv3frjjl56vzbrqi4j1"; depends=[broom ggplot2 maps rgdal rgeos sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.4"; sha256="0m0mhab74wnd9hm0im47c14m5mzsrvs61d07vikd8f1sly36h943"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; - ocedata = derive2 { name="ocedata"; version="0.1.8"; sha256="01m2pflk3zgqbqmv34w7mh8bs1lbpagdmhvhzji2j6p1fysvhqr1"; depends=[testthat]; }; + ocedata = derive2 { name="ocedata"; version="0.2.0"; sha256="1jn3plrwy7d4i2iw6zglsqpzm04m0rxl26v91v682ych2hypb7sc"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; oclust = derive2 { name="oclust"; version="0.1.0"; sha256="005ml6vhi9rw6js2v4f1dc2ci8kcd7iwrkgbs4c1qxc836ygq0yx"; depends=[entropy mclust]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; - ocs4R = derive2 { name="ocs4R"; version="0.2-2"; sha256="1b2f05yrxj3j6f6bvj3aqsv6szp5c6i5cwkfjbsrj1ncny2f53zj"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; + ocs4R = derive2 { name="ocs4R"; version="0.2-3"; sha256="09zl9jl1kzvyq0wccp41j32pr3as93qh250iaawhwkpcswjpyl89"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; od = derive2 { name="od"; version="0.3.1"; sha256="1fbx0w10wmd9f99kdigx4k21d8bsa8dfjzm9ibbf14z2908899ag"; depends=[sfheaders]; }; odbc = derive2 { name="odbc"; version="1.3.3"; sha256="1a5npspq91ksqp99nxicmdrm1703jk0gd9x6gl12i2rqf4qvwgwa"; depends=[bit64 blob DBI hms Rcpp rlang]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; @@ -13567,7 +13595,7 @@ in with self; { oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; officedown = derive2 { name="officedown"; version="0.2.4"; sha256="0h2zd7dzg63chakxsdb9n1w3sz684p63r6g1fphh4jcdmsbs5z2n"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; - officer = derive2 { name="officer"; version="0.4.1"; sha256="1gfx299zr4q2264q37994pirv5bd5isn1cszccz603ij3q40wajr"; depends=[R6 uuid xml2 zip]; }; + officer = derive2 { name="officer"; version="0.4.2"; sha256="0qmn62srh9zicgizyblanirbdva7f09g967yb86kfrn05ckh5y10"; depends=[R6 uuid xml2 zip]; }; offlineChange = derive2 { name="offlineChange"; version="0.0.4"; sha256="005afrm4ki4zz3zkgrf8c1v9gf5cjhc5g50mjkqya3r8npaccwq2"; depends=[Rcpp]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; ohenery = derive2 { name="ohenery"; version="0.1.1"; sha256="0i7cc110c30y7dm86srh2xkikkmlr28mvy0kkjxywxmiwnrsmzjq"; depends=[dplyr magrittr maxLik Rcpp]; }; @@ -13577,6 +13605,7 @@ in with self; { ojsr = derive2 { name="ojsr"; version="0.1.2"; sha256="0nwdws9kqnya9qjc939b7ksrf7ri6d25zzcdxhyhabirhnrqdg7m"; depends=[dplyr magrittr purrr rlang rvest tidyr urltools xml2]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; + ollg = derive2 { name="ollg"; version="1.0.0"; sha256="1xjfn3hlmmx65kphchhxqa9fx6qmkiyx24lp19si1y3v92wdv2i9"; depends=[]; }; ollggamma = derive2 { name="ollggamma"; version="1.0.2"; sha256="1990hr9gww636xr4gkvc816hd0pc78nw3ypbzflkh5g3pmsn7bc2"; depends=[]; }; olr = derive2 { name="olr"; version="1.1"; sha256="1l6m2gbglh8idy4k2q23qgfb7in1a6pnwiji1gbygfan6paw4xza"; depends=[plyr]; }; olsrr = derive2 { name="olsrr"; version="0.5.3"; sha256="0rh1jb0z0ypspzcp4vbpzjz960yj76myk2j4zb1vi9gnnj3clw8y"; depends=[car data_table ggplot2 goftest gridExtra nortest Rcpp]; }; @@ -13605,11 +13634,10 @@ in with self; { onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; - onlineBcp = derive2 { name="onlineBcp"; version="0.1.4"; sha256="0605hzmx42nd2ln4zv4kkhms6g8ffln3g4lnbpm93isgcxfxm3wg"; depends=[VIM]; }; + onlineBcp = derive2 { name="onlineBcp"; version="0.1.5"; sha256="0sgc77wy6q7fgrvpn5izphg0wyfylp03mb5b1j8wwf6kpspf409q"; depends=[VIM]; }; onlineCOV = derive2 { name="onlineCOV"; version="1.3"; sha256="04ikvsd76f6xhja7djyv433m88lfj2vf0y9qi6x1s4i9kh8xkbz9"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; }; - onlineforecast = derive2 { name="onlineforecast"; version="1.0.0"; sha256="191rqfz9y6hpgb21k38v3051pv9w4hm35kyg2znv864c5s7bk5ma"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; @@ -13625,7 +13653,7 @@ in with self; { ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; opGMMassessment = derive2 { name="opGMMassessment"; version="0.3"; sha256="1y6g65y6r3l0p7dbw70w8lbp4c888llwd7ak9wliwin0a54y13lz"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; - opa = derive2 { name="opa"; version="0.2.0"; sha256="05jqqqrrzv6mmhk78zjyryjy5lh693ywg1rnaanmxzbjmwikinrs"; depends=[assertthat combinat ggplot2 Rcpp]; }; + opa = derive2 { name="opa"; version="0.3.6"; sha256="1xybfpb2dzh00a38jq5b81ajqyjp3nnjnlmxnlqgmp4vcy7q3ysn"; depends=[cpp11 ggplot2 Rcpp]; }; opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.1"; sha256="18y2p13q9ib5siml00ycjq395saqpnn0wa0jf2936v48ji4kjjzp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.2"; sha256="1w3lrlc4w60fv026sbvmdki2jvg45m8mlbidwyd749vm93i3w6cs"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; @@ -13635,9 +13663,9 @@ in with self; { openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; }; openSTARS = derive2 { name="openSTARS"; version="1.2.3"; sha256="1xpba5bagq16n1k94izshdizqyx99mad1nx2w77ljznmx5qrpqa6"; depends=[data_table progress raster rgdal rgrass7 sp SSN]; }; openSkies = derive2 { name="openSkies"; version="1.1.6"; sha256="03nlbmxp36z82myrbamwl1zngsnfxfw80niisapv53n605p4lrg1"; depends=[cluster dbscan ggmap ggplot2 httr magick R6 ssh xml2]; }; - openVA = derive2 { name="openVA"; version="1.0.13"; sha256="1hps67qlimhrjk3ymmr0jgqac8z6vilqgrchqp6z7vydqirfyp5l"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; + openVA = derive2 { name="openVA"; version="1.0.14"; sha256="05pz9kyfc3z7g0zkjp9mckrimba9bf8krzfj3phy5skwrb5fm2sf"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.8-6"; sha256="1h3klcg6gjr6q2pgcd317zyw9rpj4ngmkii0azcvrkpmqpbdkzrp"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openair = derive2 { name="openair"; version="2.9-1"; sha256="0323f3lhwnv8ibbdjyn5y0c8p18d0dwrwrsxrvixsxdzkb641j2f"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr tidyr]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; @@ -13649,7 +13677,7 @@ in with self; { openintro = derive2 { name="openintro"; version="2.3.0"; sha256="0iknd0sk28qwm09zcs1dqqwlq28ph00swp75rbp6sfl0ypcnm7m5"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; openssl = derive2 { name="openssl"; version="2.0.0"; sha256="0jsnzxa72bfxsdai25xyklmmrraaf9yv2nmqmf0bgzrkbzkgsa7b"; depends=[askpass]; }; - opentimsr = derive2 { name="opentimsr"; version="1.0.12"; sha256="1anxp7lk7dya68lqsy4fs5wf1baaridir1v1qwdlspc7wr0xb9yh"; depends=[DBI Rcpp RSQLite]; }; + opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.4.0"; sha256="1q0szrbgcjzc7ny08gilv2q0v1x81i626mzsahkii79qqb7capr1"; depends=[checkmate curl data_table geodist googlePolylines lubridate pbapply rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5"; sha256="0695b265g7jwiqk5c3vmmfkvagx82bkpwhvqzhqaqmmn34l6vl35"; depends=[Rcpp stringi zip]; }; @@ -13693,13 +13721,13 @@ in with self; { optionstrat = derive2 { name="optionstrat"; version="1.4.1"; sha256="0vidaf888zdls5yxy7637fqg6r39l3rxw9bhn16s4xmag7kawljv"; depends=[]; }; optiscale = derive2 { name="optiscale"; version="1.2.2"; sha256="1ay2lfk4isv0gir5diwxlx4ml5bv5qyqbwm34py85fp6bh92987r"; depends=[lattice]; }; optistock = derive2 { name="optistock"; version="0.0.1"; sha256="1nyz64bfi4s10i4mq7crdkn3b3zqr674vfxkdd3kphjqk0wmiv1j"; depends=[]; }; + optmatch = derive2 { name="optmatch"; version="0.10.0"; sha256="1wx9xxp91dpnhxslmdphfjrcchp8ykwxksnd4vbyzcpg5y8bcraz"; depends=[Rcpp rlemon survey survival]; }; optparse = derive2 { name="optparse"; version="1.7.1"; sha256="1rqz0y4r94y3mwbb9kyz97cjqpnprka96qbncvbnbmgg2d630kij"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; optweight = derive2 { name="optweight"; version="0.2.5"; sha256="1mfk9sp47flqq7i762wip5191j8m0q9kbyxs4a7f0pd76qwf67q2"; depends=[ggplot2 Matrix osqp]; }; opusminer = derive2 { name="opusminer"; version="0.1-1"; sha256="1vw6pbk1iiaxmfws95wmwf56p3afk10s5c3x9f0lliamckpyzkck"; depends=[arules Matrix Rcpp]; }; - orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; }; @@ -13719,9 +13747,10 @@ in with self; { ordinalCont = derive2 { name="ordinalCont"; version="2.0.2"; sha256="1azwcr1si3b8dxf2y59d3rxw4msfq79khzg7zgqd0kbzyka4ygl8"; depends=[boot Deriv]; }; ordinalForest = derive2 { name="ordinalForest"; version="2.4-2"; sha256="0s5isf8z6rrksl4jv1aizffxy3bcl726qjpj5j6z7642wkdkpygi"; depends=[combinat nnet Rcpp verification]; }; ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; - ordinalNet = derive2 { name="ordinalNet"; version="2.11"; sha256="1xqrg5aglpm20ddi4ywhkcndi06fw3xxkfffqiapjs4bjayqfjji"; depends=[]; }; + ordinalNet = derive2 { name="ordinalNet"; version="2.12"; sha256="0ijgxp1lh4hbgks0p5041f5s6kpfrlm6f7hdz2nm3dn1rhq6bwvi"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; - ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.6"; sha256="0axpndyyns649mwifq8f16l8n8x9nic8cv8l71ljyr2gwlm0nqz0"; depends=[survival]; }; + ordinalbayes = derive2 { name="ordinalbayes"; version="0.1.1"; sha256="13f9rv6gndjr18rfk60rmginzam1xjsssjn45l6hhl6y3gglsyzh"; depends=[coda dclone DESeq2 devtools runjags SummarizedExperiment]; }; + ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.7"; sha256="0c1a4ziyh6jcqnblvc97gpv7bqyhd56gmxxyn1jascpvs2xxq2qy"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.0"; sha256="0nf7323wd8wm4qxlhr6cvm1l87rwfdr5c4qivhncy0m2n5vknc1c"; depends=[gtools mvtnorm]; }; ore = derive2 { name="ore"; version="1.7.1.1"; sha256="0rs5r5h11x4l4nsbl4xqzbl4ahajd5374fq05abcmfjnjr9j64w5"; depends=[]; }; oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; @@ -13750,7 +13779,7 @@ in with self; { osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; osfr = derive2 { name="osfr"; version="0.2.8"; sha256="1yzi8k6ddr8kfgsliigbwzaiqapqa65ismbvxn30ny6raa4rf2xx"; depends=[crul fs httr jsonlite memoise purrr rlang stringi tibble]; }; oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; }; - oskeyring = derive2 { name="oskeyring"; version="0.1.2"; sha256="1hwrgxsqd4s3wqvkgnga10382jva7l648jnaaff8pcb70hv4m0xg"; depends=[]; }; + oskeyring = derive2 { name="oskeyring"; version="0.1.3"; sha256="0337ighx4q1c0lq2nawhfgd9rp3cp81hwrzg2n02qh886zkpp1qv"; depends=[]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmdata = derive2 { name="osmdata"; version="0.1.9"; sha256="01w6ikqv4cl5x6zs4pzx4fgrdcgia53c9gqwd52f5pmg088pj1x9"; depends=[curl httr jsonlite lubridate magrittr Rcpp reproj rvest sp tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.0"; sha256="027mwp909xa2i32ibgig6kqazwy8kqyyqyjiyaqhpajm17kfb011"; depends=[httr jsonlite sf]; }; @@ -13767,7 +13796,7 @@ in with self; { otpr = derive2 { name="otpr"; version="0.5.1"; sha256="1wh5rmwwwdf1wkb18ayx6zcnhwf80zziznk64jg1974g8crgdxsb"; depends=[checkmate dplyr geojsonsf httr janitor jsonlite rlang rrapply sf urltools]; }; otrimle = derive2 { name="otrimle"; version="2.0"; sha256="0rca8ln9cyikfpsf1af550cfx2zx110c8jxv64xf8dnnd09s9h7b"; depends=[doParallel foreach mclust mvtnorm robustbase]; }; otsad = derive2 { name="otsad"; version="0.2.0"; sha256="1jb6raxm70aywbgs7bdyw8vccy1nj924f4hkpjrlgnvzmy0hyhvs"; depends=[ggplot2 plotly reticulate sigmoid]; }; - ottr = derive2 { name="ottr"; version="1.1.3"; sha256="1sdr03sid4kix00ip0ipirr9qswxpj40mbhg17hzlj7gvjka77ka"; depends=[jsonlite pryr R6 testthat yaml zip]; }; + ottr = derive2 { name="ottr"; version="1.1.4"; sha256="09irwppgcz97933dgxyc6z9k60j3a9n3idh009rq8bfk6rk7krss"; depends=[jsonlite pryr R6 testthat yaml zip]; }; ottrpal = derive2 { name="ottrpal"; version="1.0.1"; sha256="02y917r48mqkga27f8019cdbx4mh45dr8l9s2ai1anxgvccnb4yi"; depends=[bookdown curl dplyr fs glue httr knitr magrittr purrr R_utils readr rmarkdown rprojroot rvest stringr xml2 yaml]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.1"; sha256="04l667qmp7wqkbdsk87j92gf89s13090kzs8cjlmxsp6i69r34z2"; depends=[reshape2 vegan]; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; @@ -13777,12 +13806,11 @@ in with self; { outbreaks = derive2 { name="outbreaks"; version="1.9.0"; sha256="0x6r4rzcvd1rp8j4brq9c0zl2xsl5jfi18dny20an7aqk310p11v"; depends=[]; }; outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; - outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; + outliers = derive2 { name="outliers"; version="0.15"; sha256="1yrmwvjjb0a6sbx940k9svf23cykcxz8rrwcgyic7lpgzbrdfcfc"; depends=[]; }; outliertree = derive2 { name="outliertree"; version="1.8.1"; sha256="00fa8f4m48gig97hk7709r0x9c7v7jncryd4x4py0f9hd18vv4ix"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; }; - ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; }; overdisp = derive2 { name="overdisp"; version="0.1.1"; sha256="0gncmirpiqyxsgpsdrv875i6a9bagpz76vcbqxsaql537m1fd99r"; depends=[]; }; overlap = derive2 { name="overlap"; version="0.3.4"; sha256="1arxprhz035ab78ks88n6scwnlwmnb97mlac5gsx90ipb6gkgcyk"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.7"; sha256="1r54h4vn9nxhljhqrmzrrzaghbqzagcbnq64s86cy78kyq576xs2"; depends=[ggplot2 testthat]; }; @@ -13791,12 +13819,11 @@ in with self; { overviewR = derive2 { name="overviewR"; version="0.0.7"; sha256="1y8iqgyhppl2w9z59azi3h1kgzrw5a1zqw09zyjp0ghlvpjbn9cn"; depends=[dplyr ggplot2 tibble]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; - owidR = derive2 { name="owidR"; version="1.2.0"; sha256="0c0i0sbnzg61sx9nbc7srahkypk1fwysvbnrhp6j3vbd1rf6jqfk"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; + owidR = derive2 { name="owidR"; version="1.2.1"; sha256="0y77n42gr7i0w9d8flchr3dv55g7yb9xmbxffmfkqx2f7fszf8dz"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; ows4R = derive2 { name="ows4R"; version="0.2-1"; sha256="19mm328slb2d8i0qg6nzifah276x637gcivrad24iz8zwn0msdc4"; depends=[geometa httr keyring openssl R6 rgdal sf XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; oxcAAR = derive2 { name="oxcAAR"; version="1.1.1"; sha256="1szifw978qr7v8n178jhg4ap2jwvfnwjl2izbbiydwx8q1fyj2q4"; depends=[jsonlite stringi stringr]; }; - oxcgrt = derive2 { name="oxcgrt"; version="0.1.0"; sha256="006kdggqdy7nkllln5p7fsapmmn5wlampyw2ifc4ls9jbz0p5h16"; depends=[countrycode dplyr jsonlite magrittr stringr tibble tidyr]; }; oysteR = derive2 { name="oysteR"; version="0.1.1"; sha256="11zg959h9104hh8wid4003s8c4z9xhmicj39cc5vq1j8g1g7ilr7"; depends=[cli dplyr glue httr jsonlite purrr rjson rlang stringr tibble tidyr yaml]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; ozmaps = derive2 { name="ozmaps"; version="0.4.5"; sha256="0sqxaiw1mdcg81228g7k7r6fla6d7hfk9ax2z6pws8457xbvrzka"; depends=[oz sf tibble]; }; @@ -13823,7 +13850,7 @@ in with self; { packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.8.0"; sha256="0jn47zhcfssa2rwjh8jc2zc93g766pslxx8vjm0bsnzyzjl2yqb9"; depends=[ade4 DiscriMiner doParallel FactoMineR foreach MASS pROC]; }; packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; - packageRank = derive2 { name="packageRank"; version="0.5.0"; sha256="1w5vfz10wjf5h95czi93lbkw4hd486sfg6fxq245fk5r7cpbkpx1"; depends=[cranlogs data_table ggplot2 memoise pkgsearch R_utils RCurl rversions sugrrants]; }; + packageRank = derive2 { name="packageRank"; version="0.6.0"; sha256="09yaz2zqsyhnd2iinliayh4djwg2517sh0w6cbdnblkm7wlxg5nw"; depends=[cranlogs data_table ggplot2 memoise pkgsearch R_utils RCurl rversions sugrrants]; }; packagefinder = derive2 { name="packagefinder"; version="0.3.2"; sha256="1jskq7w26bjpam1hvyjcmmw08wz2qfzbyhxi5cdkfiiwqy15xkc1"; depends=[clipr crayon formattable htmlTable httr jsonlite lubridate pander reactable rstudioapi shiny shinybusy shinyjs stringr textutils tidyr]; }; packager = derive2 { name="packager"; version="1.14.0"; sha256="1fbwdq2x23l72lwwl1vrw4pdslwqp1dnp0ajpflnpq8yrv44sd7s"; depends=[callr checkmate codetools crayon cyclocomp desc fakemake fritools fs gert httr pkgbuild pkgload rcmdcheck remotes rhub rprojroot tinytest whisker whoami]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; @@ -13833,7 +13860,7 @@ in with self; { pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; - pacs = derive2 { name="pacs"; version="0.4.3"; sha256="1pa5s69rgxv7z3jyxxkd835pf76zjz24h3hdpqqnxr11mipvv256"; depends=[curl jsonlite memoise renv stringi xml2]; }; + pacs = derive2 { name="pacs"; version="0.4.4"; sha256="0kw8pdlxrq9z356pdgamyzkh61dg6hva4gjg2c26xan2y56bwbm4"; depends=[curl jsonlite memoise stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.1"; sha256="0afh10zf32lk6gh42y6mjfgdw2blhjavhbq2n3s8h62w9blfad5g"; depends=[circlize e1071 plotrix]; }; padr = derive2 { name="padr"; version="0.6.0"; sha256="1l8i40vqpy033j8nc8fqp9ymn378bhyy4hkj8xhk94npv7jibqkk"; depends=[dplyr lubridate Rcpp rlang]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; @@ -13880,7 +13907,7 @@ in with self; { pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; }; pamr = derive2 { name="pamr"; version="1.56.1"; sha256="0ycpgkk23y3zzkb42n2skcyl35ps1n7jmyzfj7pbxr3f6gr2grfh"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; - pander = derive2 { name="pander"; version="0.6.4"; sha256="1knjcr50xxns3w3kh15myjpsizn4d7fdqx071a4yj90imif07qjh"; depends=[digest Rcpp]; }; + pander = derive2 { name="pander"; version="0.6.5"; sha256="144zkq5w7v6fpzk3x40i0baybbp0y6x2ckh4b9qljryas9mhgp9a"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-4"; sha256="1nlnvnvq3zwzpf6hnf8akl0w25kr7hrbr98rw5vgncxw35314xdp"; depends=[jsonlite]; }; panelView = derive2 { name="panelView"; version="1.1.9"; sha256="1qrlw4n5sw1mdchgn6p2f2zijmmm87nq5ffdgg4m1gyzkd40qfw8"; depends=[ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; @@ -13901,10 +13928,10 @@ in with self; { parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.1.0"; sha256="1zppgd0dwxfryv6wfl6k7jrny1yqb5q4f8phnnmzz9ydlv7xyv32"; depends=[htmlwidgets]; }; - parallelly = derive2 { name="parallelly"; version="1.30.0"; sha256="0fwzkzw9vjblwk5rg56yl8qfn7irnbpm70405lmj7awvf35q1c5a"; depends=[]; }; + parallelly = derive2 { name="parallelly"; version="1.31.0"; sha256="0kjwxgxnlpjbxpr1dyzk3nyx9fwa6vwqr22bvsxz56xwxnirzdxx"; depends=[]; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; - parameters = derive2 { name="parameters"; version="0.16.0"; sha256="1i295d5nqjr3pvp9vz59wiasrxy9n78q518phcd15sxcjzcj0l27"; depends=[bayestestR datawizard insight]; }; + parameters = derive2 { name="parameters"; version="0.17.0"; sha256="0wrhs3rhr62441cghg4nsrlp6r41nf7x5nclzz71v5c0rfn8jh79"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="0.2.0"; sha256="16gvs8328bnqvhx47f0xwnmbmlakxmp4ivnjxk2b13z6qjs70ij4"; depends=[ggplot2 ggpubr lme4 survey]; }; paramlink = derive2 { name="paramlink"; version="1.1-4"; sha256="1dwm7kv1a9d07hpk3l6mih6qbq9ga7idqlyqs0impxnd83lwp093"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.3"; sha256="0ypn0fdrphblw64sdnfmyf9q4zbakqvl4xzr451phvhx52n1gb73"; depends=[pedprobr pedtools]; }; @@ -13923,10 +13950,11 @@ in with self; { paropt = derive2 { name="paropt"; version="0.2.1"; sha256="0a9xd340lqmj32vzwbnrxqa3cklprpikr8f8d8xfj8n1cyw39jwl"; depends=[Rcpp RcppArmadillo]; }; parqr = derive2 { name="parqr"; version="0.1.0"; sha256="11956dvv46sgpmbv429c24wxdhfqvc07jxc1i4yymyz1l8wgr3yb"; depends=[arrow magrittr purrr]; }; parseRPDR = derive2 { name="parseRPDR"; version="0.2.1"; sha256="1k4153bhf623xla6b174as4n8fh8ic0wnw8psxwa2vj3q3nifwbx"; depends=[bigmemory data_table doParallel foreach readr reticulate stringr]; }; - parsec = derive2 { name="parsec"; version="1.2.5"; sha256="1qd9gyb6zkahql74x9nds72fmx0i5cyg9kank929cz5iziqf85y5"; depends=[igraph netrankr]; }; + parsec = derive2 { name="parsec"; version="1.2.6"; sha256="04irxvzk47cy7bpbzz4a12b5m4ar6y4a060j8ydll4ckjia9nyj0"; depends=[igraph netrankr]; }; parsedate = derive2 { name="parsedate"; version="1.3.0"; sha256="1c2cpsvma3fkx6zp191bpfvf5rmpsr13g8rzqk6ycyb0n7b9k4qy"; depends=[]; }; + parsel = derive2 { name="parsel"; version="0.1.1"; sha256="0v1rrp04nsjbq9nf2xx3fcy8iap2f3s6fgbyk1zblbbfpfi3pyav"; depends=[lubridate purrr RSelenium]; }; parsermd = derive2 { name="parsermd"; version="0.1.2"; sha256="15fy5vgzbrxq1yj4bgd0q1n5gjwvfh6s03ar5mj3hpp5mz6qmsdg"; depends=[BH checkmate cli dplyr lifecycle magrittr pillar purrr Rcpp readr rlang rmarkdown tibble tidyr tidyselect withr yaml]; }; - parsnip = derive2 { name="parsnip"; version="0.2.0"; sha256="0g213c91lzwq9hd22yxkj3igqw04czncnbc4jddnpghp4gpfn1kn"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr prettyunits purrr rlang tibble tidyr vctrs withr]; }; + parsnip = derive2 { name="parsnip"; version="0.2.1"; sha256="195i4j38mljv9193yx8lmh65h85yhc52y9vc1mk8zvxi52ks1yln"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr prettyunits purrr rlang tibble tidyr vctrs withr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; @@ -13979,7 +14007,7 @@ in with self; { paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.12"; sha256="0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.3.16"; sha256="0mdbnbjprghiwz4i9abh62l5q6mncz3iq76wxvj7ncinf89kd83w"; depends=[base64enc digest httr jsonlite xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.3.17"; sha256="1dg18hwnrjd6m1vjcxfs2vm1zxciivf4vzhq0z76dmmiqz2yjm28"; depends=[base64enc digest httr jsonlite xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.1.12"; sha256="1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; @@ -14015,7 +14043,7 @@ in with self; { pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; - pcalg = derive2 { name="pcalg"; version="2.7-5"; sha256="136w94s0pi5llyfkh7vdff94yl3x6ajbnzb112fd485wr60f7d5x"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcalg = derive2 { name="pcalg"; version="2.7-6"; sha256="0c84dl15dy2v19m7603walsd9zmnalwz56729jd23kfw6yh0mglk"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; pcalls = derive2 { name="pcalls"; version="1.0"; sha256="1vdgvrzfv69p3p5zc9i6gxq53f36s0mia4idzrbsda661f1bhmxk"; depends=[]; }; pcatsAPIclientR = derive2 { name="pcatsAPIclientR"; version="1.0.0"; sha256="07klw04zq3q18d13grmgjl4fywby7bazxm28v25snrim33n2ybhp"; depends=[httr jsonlite testthat]; }; pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; @@ -14054,17 +14082,17 @@ in with self; { pdqr = derive2 { name="pdqr"; version="0.3.0"; sha256="0agkxl23h57smq292l5b0wdi2ixxg6l0fi74sans5hljmyg2zqns"; depends=[]; }; pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; }; pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; - pdynmc = derive2 { name="pdynmc"; version="0.9.6"; sha256="0347p0s4zx3y4yp2rzn4zz4lkj32skll2n2wrnb7yxsnhwf94a7f"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; + pdynmc = derive2 { name="pdynmc"; version="0.9.7"; sha256="17gra5w2s2qb73bb509n4xlhwcvk7jwv9hw38ww41qv1g0v436lz"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; - peacesciencer = derive2 { name="peacesciencer"; version="0.7.0"; sha256="1z7h22rigw7r8njvwhjg7cn7blayn9vm7wrng1fmzk85j50nj37s"; depends=[bib2df dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; + peacesciencer = derive2 { name="peacesciencer"; version="1.0.0"; sha256="00b1a1qg17klg5pcf86yb8j5g2chcrhbs0lvkqnjv7h0ycx9kwbl"; depends=[dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; pec = derive2 { name="pec"; version="2022.03.06"; sha256="1v43k2l46dz1myas9afyd5cp9a9rw7l71i7k4z8pwlw6aydispnm"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; - pedSimulate = derive2 { name="pedSimulate"; version="1.3.1"; sha256="0rbk8w742i8s9avn9xn8290nkd2mb9aa7p8vzya1dk72x7l51y7b"; depends=[]; }; + pedSimulate = derive2 { name="pedSimulate"; version="1.3.2"; sha256="0v1swbilc2pmcf86z1g42yjr4lmb9zwda2kv4pap27prk4n224b9"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; pedbuildr = derive2 { name="pedbuildr"; version="0.2.1"; sha256="19yzfg5jms2qnww4p8npmk9815hrgqsbd49h8pi62yy9kjqnccai"; depends=[forrel glue pedprobr pedtools]; }; pedgene = derive2 { name="pedgene"; version="3.3"; sha256="0y6kr5ad4fmxljsj0czs9h1dkz63wvqiira9ibgsf0707xb0vh7f"; depends=[CompQuadForm kinship2 Matrix survey]; }; @@ -14076,7 +14104,7 @@ in with self; { pedprobr = derive2 { name="pedprobr"; version="0.6.1"; sha256="0rz5i03d75nlli8m186b4a1yy3yx54cvm8hvp603ziglp2b5mf2y"; depends=[pedmut pedtools]; }; pedquant = derive2 { name="pedquant"; version="0.1.8"; sha256="0rzpnsf6d509f4wkkdcrsw7rfdlvg12mr25ha3dy6a47nqscxlhp"; depends=[curl data_table ggplot2 gridExtra httr jsonlite PerformanceAnalytics plotly readr readxl rvest scales stringi TTR webdriver xml2 zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; - pedtools = derive2 { name="pedtools"; version="1.1.0"; sha256="0cm2arhn81dl4w26rc701f8b7ldz1r1ad7g7lnw67lq2irnfkgfg"; depends=[kinship2]; }; + pedtools = derive2 { name="pedtools"; version="1.2.0"; sha256="0yyia6s3dzyrwm9gpmcnfgz6js9hr9x7fvxzqcxgzh6i0kp8p2ng"; depends=[kinship2]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.1"; sha256="0ngd0laqbs139ji9hm9kwsm9rm56agw2yyfcplxgqva936l93fl7"; depends=[ape]; }; pema = derive2 { name="pema"; version="0.1.0"; sha256="0z56r7jjigyw3lxf2bvzhfb3a7bs79pj4w7r9qg231z30sf4m1fz"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; @@ -14088,9 +14116,8 @@ in with self; { penalized = derive2 { name="penalized"; version="0.9-51"; sha256="1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; - penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="1.0.2"; sha256="1p9s9d8awc3v1g4qkigpp76gmicmhy7mia8vnfpinwmvik6bazim"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="1.1.0"; sha256="0v9b341cmvjrj424a94sy4ghvpdkjj7pbyv7ipj10wr425chhw4w"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; @@ -14108,7 +14135,7 @@ in with self; { perccalc = derive2 { name="perccalc"; version="1.0.5"; sha256="14557k7khc3l5m0vlam0fvbsb6p78v9gfcnx5ksxcvrab28xj7p3"; depends=[multcomp tibble]; }; percentiles = derive2 { name="percentiles"; version="0.2.2"; sha256="08gzl2qq0856nj20bdxl3r0a7p5f4cjmvxkaqkjvq4n275ghvskq"; depends=[assertive_types assertthat dplyr R6]; }; perfectphyloR = derive2 { name="perfectphyloR"; version="0.2.1"; sha256="1i1h5k2aqaqygd8gzq2bmz266mjzdi2mfikkz6hzmhi2il8708w9"; depends=[ape phytools Rcpp RcppArmadillo]; }; - performance = derive2 { name="performance"; version="0.8.0"; sha256="1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2"; depends=[bayestestR datawizard insight]; }; + performance = derive2 { name="performance"; version="0.9.0"; sha256="1znr4i1pjv6z3lj6qrma2i3l94rz1z29w92mrxxfy3ch0s71crww"; depends=[bayestestR datawizard insight]; }; performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; }; pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; }; periscope = derive2 { name="periscope"; version="1.0.1"; sha256="06rhi77a7561a0k99sn9h0pxfgar4s8iyg2mligyig2z8j66dcqb"; depends=[DT fresh ggplot2 lubridate shiny shinyBS shinydashboard writexl yaml]; }; @@ -14189,15 +14216,16 @@ in with self; { phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; }; phonics = derive2 { name="phonics"; version="1.3.10"; sha256="1g4gmfz190xaj800gawl79fzhmgimssa31kqzw8a70scp5psz3fw"; depends=[BH data_table Rcpp]; }; phosphoricons = derive2 { name="phosphoricons"; version="0.1.1"; sha256="0krb1gl5h6k6m289f0hjizrx6ysmv21z9a4h7k6fip0r26fjili6"; depends=[htmltools]; }; - photobiology = derive2 { name="photobiology"; version="0.10.9"; sha256="0fjiwp6hpb1fgzv4qfmljrnarvrnwsdy0rqz735mrizxdn1qigqg"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; + photobiology = derive2 { name="photobiology"; version="0.10.10"; sha256="14bagnhh955a5nhm5ywrwzpbf7afabm7pycmkxay2jidj1hj8xm8"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.2"; sha256="0n987klwyj06xikmvg9cvsjzrxll1d7p358jw4ls0j46byki98s5"; depends=[photobiology]; }; photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.23"; sha256="1g73pjh7yqbdn8sd8r3w19l67yvmxyxd2zwsvywvdh1jj2cn6s7h"; depends=[anytime colorSpec dplyr lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; }; - photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.3"; sha256="1df7ngcyrmvhab80w1ggyv1p9srsvwr9f6pm8yl7hvkpkv6jbdsk"; depends=[photobiology]; }; + photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.0"; sha256="1gz8giflh5mjam5bivv161vi8fk9ckailbz8fszv5azyn937jc7q"; depends=[photobiology]; }; photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.2"; sha256="0ab5ks72mb5x03xc0ww9fcl0h13ja8402b1s670lqmmhyvp6fj3s"; depends=[photobiology photobiologyWavebands]; }; photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.5"; sha256="0lvj5birzzjrkcikg515zgxa2gd06bsbr5i575y9ppxw7kbyqga9"; depends=[photobiology]; }; + phreeqc = derive2 { name="phreeqc"; version="3.7.4"; sha256="1xhpbi76y87phss10zlxpcz3fm3md3y4lh2cvypnx5ccxfdzflyl"; depends=[]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-30"; sha256="0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; @@ -14221,15 +14249,16 @@ in with self; { phyr = derive2 { name="phyr"; version="1.1.0"; sha256="0jvjxvxx2nz9ra9vp00bmm3dxr2am4zs8cvxij8w4jjyskznxc96"; depends=[ape dplyr gridExtra latticeExtra lme4 Matrix mvtnorm nloptr Rcpp RcppArmadillo tidyr]; }; phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; physiology = derive2 { name="physiology"; version="1.2.1"; sha256="1z7xymwgj7bqn0yvcz3q8pvwhpr5vx5qd0x8sayal1vgpqc0nccb"; depends=[Rcpp]; }; - phytools = derive2 { name="phytools"; version="1.0-1"; sha256="1j0s7ai3mmhsc94m4gka11mnw9ryvrhnf7s8298i21a2xhsmvgxp"; depends=[ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; + phytools = derive2 { name="phytools"; version="1.0-3"; sha256="0zdkh8v6wyn576gdxiknls0ysks9pr1fwkj9q5j548z8mb3axqmz"; depends=[ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; piar = derive2 { name="piar"; version="0.3.2"; sha256="1z78cf0zqxfdx4lqip17v3c7jdkq1g8db8231az8bv527n2gqh8p"; depends=[gpindex]; }; picante = derive2 { name="picante"; version="1.8.2"; sha256="19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; + picker = derive2 { name="picker"; version="0.2.6"; sha256="1n7h1lvrivy7czzhisd9p3g187ivcyhzyjj7ahkimyb296gy8z1b"; depends=[htmlwidgets]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; piecemaker = derive2 { name="piecemaker"; version="1.0.1"; sha256="1i9k88i0rqsbf2564ims69x1pind1xgvljaf9smnnjpi77442jiw"; depends=[rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.10.1"; sha256="189dqwh7kkgcvw2j8bqqff2r9si6i89avip0zdm1h941akc66kdv"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; + piecepackr = derive2 { name="piecepackr"; version="1.10.3"; sha256="1idlmg05988y834a9af0rz2wsris541ipvx2lxh8f6vsw0gx0pix"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.1"; sha256="1d448hkk772d21ix1l1cgq2a0spyjnppyrn1myjcv3dcrfxndn83"; depends=[clisymbols crayon fs gh httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.7.0"; sha256="1fqk18vc9ashf12gdqkdi6n1nj5lh324vwhgiib3b2fcb2bghhbq"; depends=[cli crayon ellipsis fansi glue lifecycle rlang utf8 vctrs]; }; @@ -14280,7 +14309,7 @@ in with self; { pkglite = derive2 { name="pkglite"; version="0.2.0"; sha256="1qjym8kkbmzdz46xn6a4ir8b07ws30s3m7zdrgh98nf0vrv9bkj8"; depends=[cli magrittr remotes]; }; pkgload = derive2 { name="pkgload"; version="1.2.4"; sha256="03yr9mswx9nij27bp21q6c533zx310xwzhwm52dwr7554k42p4fn"; depends=[cli crayon desc rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; }; - pkgndep = derive2 { name="pkgndep"; version="1.1.1"; sha256="0dr5b3ibhvj29f9yvi0v3k41ac6krf85ghxswwr6p4m9vsblmdfx"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; + pkgndep = derive2 { name="pkgndep"; version="1.1.3"; sha256="0p3lrmp5z0rmwsqn7wxj6xzcn07h6d1xdvsv1b0wb8rjnna56nqz"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; pkgsearch = derive2 { name="pkgsearch"; version="3.1.0"; sha256="1xr4k7x3qhny9qpn9sr2img6hakp3k2qy85l1hsirnz7kjk4dgbn"; depends=[curl jsonlite parsedate prettyunits]; }; @@ -14294,7 +14323,7 @@ in with self; { placer = derive2 { name="placer"; version="0.1.3"; sha256="0d7b6mkyyrcjn1pqxlj9mjis6vzks986i7vhc8ffkp8hz8sc7271"; depends=[]; }; places = derive2 { name="places"; version="0.1.1"; sha256="08w6z5gbsskcbi5j1rml9mi9qdab6w2q58vz80h6xc6bh6mr0fab"; depends=[data_table dplyr geosphere googleway hms rgdal rlang sp stringr tidyr]; }; plainview = derive2 { name="plainview"; version="0.1.1"; sha256="095y0cjp7g0h1kdbiwh1k2mj0ap8vm54nx8mf84ckamzc1jnmlfk"; depends=[gdalUtils htmltools htmlwidgets lattice png raster viridisLite]; }; - plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; }; + plan = derive2 { name="plan"; version="0.4-4"; sha256="0xpl1hrq0cs1bi8wn1bb1d4lmb6g1dfzp8wlwa9g2bc12yw5q8hg"; depends=[]; }; planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; @@ -14308,17 +14337,16 @@ in with self; { pleio = derive2 { name="pleio"; version="1.6"; sha256="0av1sl0fdn2ia7ddalbvidhcnsvs36iq618s1bknjw29y5yyq020"; depends=[Matrix rms]; }; pleiotest = derive2 { name="pleiotest"; version="1.0.0"; sha256="05mgz42wn1y7q8ffgvak22r3k40q9rv1qvpal8yycp83p7hdzg7v"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; plfMA = derive2 { name="plfMA"; version="2.0"; sha256="14v3q4sv3inax3b1sp0i4scrz70ca9yphzikhx0z9dh2w5mggq0k"; depends=[gWidgets2 gWidgets2tcltk limma RColorBrewer tkrplot]; }; - plfm = derive2 { name="plfm"; version="2.2.3"; sha256="18knb9bc6nvr87c60m1mjr7088r71ba3sq9hkh9j4drhl08dqwf7"; depends=[abind sfsmisc]; }; - plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; + plfm = derive2 { name="plfm"; version="2.2.5"; sha256="0vcr1abzslsds0w4y2gyrrlbmqmxi5007km5fbj1xq2mrwjmngpp"; depends=[abind sfsmisc]; }; + plgp = derive2 { name="plgp"; version="1.1-9"; sha256="1wndhk4i2zngpvq85dgpwn80p5av7ksfap21wq95vf3zgmzy5x2a"; depends=[mvtnorm tgp]; }; pliman = derive2 { name="pliman"; version="1.1.0"; sha256="0w7r5xf3n4w455wbbpwjfwzf6ia0p02v9gb23c4h1dg2v4ma4s02"; depends=[lattice]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; plm = derive2 { name="plm"; version="2.6-1"; sha256="1sanrpphdj6pc9f0xcixm19kkr0nl04zhywf7hklmadby4372318"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; - plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; - plot_matrix = derive2 { name="plot.matrix"; version="1.6.1"; sha256="0nw2irc7bl7pdpc8nj2yqvc942f1znsj9rn34nya611x1kgjffl7"; depends=[]; }; + plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.2"; sha256="15m48rzs96mgsnlf77823z2c58gry6hab00xg40myfba8j8li1xa"; depends=[plot3D rgl]; }; plot3logit = derive2 { name="plot3logit"; version="3.1.0"; sha256="0iwhaly6lzpfaanyy1qayl6faihw5rkcnh21czdr1g0f9rjimyrb"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; @@ -14368,7 +14396,7 @@ in with self; { plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; - plyr = derive2 { name="plyr"; version="1.8.6"; sha256="11sjjdn146w95s1vsfmmgdls082cbnm1slv98xvyjhsl2mpx4mga"; depends=[Rcpp]; }; + plyr = derive2 { name="plyr"; version="1.8.7"; sha256="0zz88q055c38b9xqzfg1mwm7ikxzlyx3pnk16sfa8dbh2pqxm7vx"; depends=[Rcpp]; }; pmc = derive2 { name="pmc"; version="1.0.4"; sha256="0y2h6r8dx721n0wwbc3i5j50j694kxanc4vxwr07939145bvpfac"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; @@ -14380,22 +14408,22 @@ in with self; { pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; pmparser = derive2 { name="pmparser"; version="1.0.4"; sha256="0qf71w6m6cgmx2isizadihjxildqrxygm8vm906fb13ydxslj1xq"; depends=[data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; - pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; - pmxTools = derive2 { name="pmxTools"; version="1.2.1"; sha256="0r5y09ab6k31d7fbd5pn8lzaafq1ix2lrjci1bsvg0wwcxmdipw6"; depends=[chron data_tree DiagrammeR dplyr ggplot2 ggrepel gridExtra magrittr MASS stringr xml2]; }; + pmxTools = derive2 { name="pmxTools"; version="1.2.3"; sha256="09hnkzxwbj025an5kn91sw1sanxlcnmsi9wz8545fkcna78384zk"; depends=[chron data_tree DiagrammeR dplyr ggdist gghalves ggplot2 ggrepel gridExtra magrittr MASS stringr tibble xml2]; }; + pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; - poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; + poLCA = derive2 { name="poLCA"; version="1.6.0"; sha256="1yg1iapmkpxdajnf1a8qn9b6namfka7a0jjh943h3zx9pdmc9b7h"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; podcleaner = derive2 { name="podcleaner"; version="0.1.2"; sha256="1r8mvf8bw329n3ifi2dyy4220nbij2rgkvq1xlqzynxf8qadxbrl"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; }; poems = derive2 { name="poems"; version="1.0.2"; sha256="194448cyzn6qqkikpgxi1n1m98i6dfiwg0016n34ssqpf3vvc6a1"; depends=[abc doParallel foreach gdistance geosphere lhs metRology R6 raster trend]; }; pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; - poilog = derive2 { name="poilog"; version="0.4"; sha256="0bg03rd5rn4rbdpiv87i8lamhs5m7n7cj8qf48wpnirg6jpdxggs"; depends=[]; }; + poilog = derive2 { name="poilog"; version="0.4.1"; sha256="17rq2p251bvzrimac3c5lshlzmwz9in5rl2qq27paz6qa1p429mi"; depends=[]; }; pointRes = derive2 { name="pointRes"; version="2.0.0"; sha256="17rrdcpvd8v95g5vmbyq5gjpcc3rfbq3m6ajzc56fcizcqd4xx52"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; pointblank = derive2 { name="pointblank"; version="0.10.0"; sha256="0890ss04kvj3p8sj0nlrw9lnb2iy3hdg5lcni5sq2in8kxk59228"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; @@ -14412,7 +14440,7 @@ in with self; { poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; - policytree = derive2 { name="policytree"; version="1.1.1"; sha256="0xk3l5cy46br73g8m1gm3dbim72asq0wfsa50mnchkhk42rxv6a3"; depends=[BH grf Rcpp]; }; + policytree = derive2 { name="policytree"; version="1.2.0"; sha256="0ixw6b1zy4h51dzhmrfsghnqxm3mw221v5armsxnc88xpw2rac93"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; polished = derive2 { name="polished"; version="0.6.1"; sha256="08n8pf1gqd2fyar9mawlvakg9nj715nx4vfnm8ywzb88gmkr64fg"; depends=[automagic digest dplyr DT htmltools httr jose jsonlite lubridate purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; @@ -14439,14 +14467,14 @@ in with self; { polypharmacy = derive2 { name="polypharmacy"; version="1.0.0"; sha256="1rimhy7z5xglkxfp3yh4vqm5g075n8g09nl4a8nxxf6cyl504gcv"; depends=[data_table doParallel foreach itertools lubridate stringr]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polyqtlR = derive2 { name="polyqtlR"; version="0.0.9"; sha256="0j879bvks6ldx53yfmac94p5n4p79pyq29ljdzbvajmxq5b57vf8"; depends=[abind doParallel foreach Hmisc knitr nlme RColorBrewer Rcpp RcppArmadillo reshape2]; }; - polyreg = derive2 { name="polyreg"; version="0.7.0"; sha256="1vsg1ldhvdq8pmw16qiv62c5l52mh6ccjcz3i3v06150ma953gcn"; depends=[dummies nnet]; }; + polyreg = derive2 { name="polyreg"; version="0.8.0"; sha256="0fh4yp9b35ag6snz6l85xmn0pc18qn0jggzsyk12g05dfb6r6qvw"; depends=[nnet]; }; polysat = derive2 { name="polysat"; version="1.7-6"; sha256="0h2yqbr0mzv8lk24cd3q242prcz009q8vkvwm9iklpkw49zh8hq5"; depends=[Rcpp]; }; polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; pomcheckr = derive2 { name="pomcheckr"; version="0.1.1"; sha256="0fm2v388ya7v4vrb5rvilghlf49d15jlwz0isf95ldr81a55m9ij"; depends=[assertthat dplyr ggplot2 magrittr rlang stringr tidyr]; }; - pomdp = derive2 { name="pomdp"; version="1.0.0"; sha256="1wj84qj7xssnw0a9985nr529i93z827b1js5i8mdsgxp8fdl1dgd"; depends=[igraph pomdpSolve]; }; + pomdp = derive2 { name="pomdp"; version="1.0.1"; sha256="1nrww68lfczfjbcvbj6rc3llqmwl3mfg6cip09vy726yyqw2d6jb"; depends=[igraph pomdpSolve]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.0"; sha256="0iqpp1y8gz3ihifgln7b5xmwjrvripmkkwg6mr4938yqv7103mz1"; depends=[]; }; - pomodoro = derive2 { name="pomodoro"; version="3.3.0"; sha256="170lvp27gyn189kcpn7nmnkfq2pj6i1ihxqjnf37h7m74msn64si"; depends=[caret dplyr gbm ipred pROC randomForest readr tibble]; }; + pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; pomp = derive2 { name="pomp"; version="4.1"; sha256="1yv29iqzzqdfr34z98x0l8j3s3c45jhaqvb83njv996g11wxbkw4"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; @@ -14457,6 +14485,8 @@ in with self; { poolr = derive2 { name="poolr"; version="1.1-1"; sha256="1y8bish2s96b42xsld0x1nrjz9dzqhdr2w95vdpfymq7mg05d1ry"; depends=[mathjaxr]; }; poorman = derive2 { name="poorman"; version="0.2.5"; sha256="05h7rjgri0b5a1jd0388p7lqvvg0y8z6g42f9bxc80jg1z730axr"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; + pop_lion = derive2 { name="pop.lion"; version="1.0"; sha256="00si6jvm9whl7p0j21bfkqm79wxxflk9dg3171hjlvz5dxq6ypga"; depends=[abind]; }; + pop_wolf = derive2 { name="pop.wolf"; version="1.0"; sha256="113l9skpggjxjpwxibfp611z2gnjikfqh6kmj6in52sn9q4yqv83"; depends=[abind]; }; popEpi = derive2 { name="popEpi"; version="0.4.9"; sha256="1a79n3rry85qa52cn7zbhwbsyjgw7b72l97pw3p9sf2lgvacvxr1"; depends=[data_table Epi survival]; }; popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; @@ -14472,6 +14502,7 @@ in with self; { popsom = derive2 { name="popsom"; version="6.0"; sha256="1zjg55fs4j36rp75k0961pndjqd4w085lc7v83nprjpc7jnx45g6"; depends=[fields ggplot2 hash]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; populR = derive2 { name="populR"; version="0.1.4"; sha256="18va6wfqp3p2vmmiiasv3qnxdi4sbg2kl0s6a1i1qq6qpb7nq2y2"; depends=[Metrics rlang sf]; }; + population = derive2 { name="population"; version="0.3"; sha256="00kagbz4pr4c5z6cb5w4y9nlbjzaa2awc45z2cvrivng76376br3"; depends=[abind]; }; populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; }; porridge = derive2 { name="porridge"; version="0.3.0"; sha256="0vv6qs937mgiaarwyjfs5g7lzw3sx630lslxldx9gcgkp2n5sd1h"; depends=[MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; portalr = derive2 { name="portalr"; version="0.3.9"; sha256="08f5pq6b0248p3akgw50y22dsmyzcnx5sjl58xqlyp3w1p57a3hd"; depends=[clipr clisymbols crayon dplyr forecast httr lubridate lunar magrittr rlang tidyr tidyselect zoo]; }; @@ -14523,6 +14554,7 @@ in with self; { ppmHR = derive2 { name="ppmHR"; version="1.0"; sha256="1fc9rrk3ir3dq5d518ih67dvknhz1ln6668wy2mzsdndaysgm12g"; depends=[nleqslv]; }; ppmSuite = derive2 { name="ppmSuite"; version="0.2.1"; sha256="0mghp75lx63wyy5cx5npayidrvpqn6yalaw9xnbm5df9vdfdllaf"; depends=[]; }; ppmf = derive2 { name="ppmf"; version="0.1.3"; sha256="0xphk27frlcr87jwjbgwf77c8bhv0nswmffj9ny2vd1b176bi9xn"; depends=[censable dplyr magrittr readr rlang stringr tibble tidyr zip]; }; + ppmlasso = derive2 { name="ppmlasso"; version="1.2"; sha256="0pdafk8f8z92v4rs0n78sj9gy80l2nr9n91y2icbchgh8fa1hi1m"; depends=[data_table lattice plyr spatstat spatstat_core spatstat_geom]; }; pps = derive2 { name="pps"; version="1.0"; sha256="0k06rkzdx07qcndqym44q6xyawdd253i3kbyqlmlavadsizp657g"; depends=[]; }; ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; }; ppseq = derive2 { name="ppseq"; version="0.1.1"; sha256="0r1si156d806l35241fy85cr98j2mmsmc63nwilhr2px9272r75b"; depends=[dplyr furrr future ggplot2 patchwork plotly purrr tibble tidyr]; }; @@ -14534,17 +14566,16 @@ in with self; { pracma = derive2 { name="pracma"; version="2.3.8"; sha256="0r17siivm37k4gp253v9mlg5m7cwqp85h9kk2hbp2wkf81ad80i3"; depends=[]; }; prais = derive2 { name="prais"; version="1.1.2"; sha256="16h3771lr6vn0g92bfpdq7r3wpdkspbhmrl5948p4isc5qxy2cgx"; depends=[lmtest pcse sandwich]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; - praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; praznik = derive2 { name="praznik"; version="10.0.0"; sha256="199g6wgda6m8ym9kg3qbx42c21bigg9bxkga950k2hdm3f1xa62g"; depends=[]; }; prcbench = derive2 { name="prcbench"; version="1.0.2"; sha256="0ilann11cfmbw7xj7j6y6j5y0hlfjf7wvfbq2hfvlxi87hijh3ka"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.2.1"; sha256="0k5vl14akqf8qvak6h7a19qxn4wzpyxq7lyvdhxfh8l4gs4ca2l6"; depends=[class dplyr forcats ggplot2 irr lpSolve magrittr purrr tibble tidyr]; }; - pre = derive2 { name="pre"; version="1.0.2"; sha256="1j2jcq51gkqzy1ip4inf9j3z1p9cr134vjf6mfpq4331hp493hql"; depends=[earth Formula glmnet Matrix MatrixModels partykit rpart stringr survival]; }; + pre = derive2 { name="pre"; version="1.0.4"; sha256="12imjk191f38y5sr3n344wpg0r03nrhh7s4dbxgzq63as9x9snrr"; depends=[earth Formula glmnet Matrix MatrixModels partykit rpart stringr survival]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precisePlacement = derive2 { name="precisePlacement"; version="0.1.0"; sha256="1w48k4kv3xm8br7dgbpx2rcdxjh0g0aw8xa1snqy0ig8a992804b"; depends=[]; }; precisely = derive2 { name="precisely"; version="0.1.2"; sha256="1zzg2fgf58gjq081rklqjf8wxz8mf7rc3vyhbji3j3n6j0x125n4"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinycssloaders shinythemes tidyr]; }; precommit = derive2 { name="precommit"; version="0.2.2"; sha256="12fq44s16qjbjr6n1cj0z7w3a01bqs5grpnd1mx2sph33xizcmal"; depends=[cli fs here magrittr purrr R_cache rlang rprojroot rstudioapi withr yaml]; }; - precrec = derive2 { name="precrec"; version="0.12.8"; sha256="0kwn902z32qcnkffjm6dqnaxagx31xjdcak50clbgrway2pcdjrm"; depends=[assertthat data_table ggplot2 gridExtra Rcpp withr]; }; + precrec = derive2 { name="precrec"; version="0.12.9"; sha256="1dfz2rqx2ww2l5r40ahg0qdj3rjrwiwh427mw7j5ynhpcj21j2qm"; depends=[assertthat data_table ggplot2 gridExtra Rcpp withr]; }; predReliability = derive2 { name="predReliability"; version="0.1.0"; sha256="18s9ijg3fcg6qb0y6pnwngmv69ajm93z0xjdzkq3fp5bxk1qylyb"; depends=[cluster rpart]; }; predfairness = derive2 { name="predfairness"; version="0.1.0"; sha256="0b9d6a2rk6vw4y5hnh721gmirnm419yynbfg7arjb96558l282kd"; depends=[]; }; predhy = derive2 { name="predhy"; version="1.2.0"; sha256="0iwlv9j0xpsl2xkvy7yb1irjg67d8xq13bzgjj8i4rqqhv12ap57"; depends=[BGLR doParallel foreach glmnet pls randomForest xgboost]; }; @@ -14554,6 +14585,7 @@ in with self; { predictmeans = derive2 { name="predictmeans"; version="1.0.6"; sha256="1mg37vd5nlfvv3mx6hrdmxj0aavm9wy1j70117hp4sasvlvsccdi"; depends=[ggplot2 lme4 lmeInfo Matrix nlme pbkrtest plyr]; }; predictoR = derive2 { name="predictoR"; version="2.0.5"; sha256="0h0dn8xwl0i1z95frk37zmivjrvadl5g0skirfavpk9fd8s0fvg6"; depends=[colourpicker config DT echarts4r glmnet golem htmltools rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; + predieval = derive2 { name="predieval"; version="0.1.0"; sha256="1883dv3sdrf0dy55k5mlaaycr73xr86ly23x58rci2xhm3g4lpy7"; depends=[ggplot2 Hmisc MASS Matching]; }; predint = derive2 { name="predint"; version="1.0.0"; sha256="043nsjvn88dhwvp5snbhmh64m8iy22ws4l474mbkm3rb488i9is9"; depends=[dplyr lme4]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.1"; sha256="0352c50zlyzn8fczrkinayllj9jp978njjl7dazzkzypx0p20va5"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; predtools = derive2 { name="predtools"; version="0.0.2"; sha256="1bp0pvpd6s190q9kylvkcfh61jblbsla4d7rmnqv2rhza71mdfkj"; depends=[dplyr ggplot2 magrittr pROC RConics Rcpp]; }; @@ -14592,11 +14624,12 @@ in with self; { prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; }; priceR = derive2 { name="priceR"; version="0.1.6"; sha256="1c2yxjrd9v5i76hc5dn0hc6k2shy9cs32mvhr579w7n990ksjw23"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="1.2.2"; sha256="0clbc1p809rjgqilv548ck7pfbyajkp2i47vxx8yrrdgkx824gpn"; depends=[ggplot2 rlang survey]; }; + prider = derive2 { name="prider"; version="1.0.4"; sha256="0sinaav8vwdd9aqgpnclah6kyw0r7afr39kz1ms9w8r6sya62q5g"; depends=[blaster dplyr gplots magrittr purrr Rcpp stringr tibble tidyr]; }; prim = derive2 { name="prim"; version="1.0.20"; sha256="0z07ddpz6r3sbi5141n9a0snzcc26rdlxiivfnacs8zavs1sk73x"; depends=[plot3D scales]; }; primePCA = derive2 { name="primePCA"; version="1.2"; sha256="0w3w50x17q7gwji19m6dx5vq46h8p62alf3axd10mycl609jlbcb"; depends=[MASS Matrix softImpute]; }; primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.2.0"; sha256="0qs4bzh80a6058v3s25z0w64wqpscgcciqbyqdifixl51z2qadf4"; depends=[deSolve ggplot2 tidyr]; }; - primerTree = derive2 { name="primerTree"; version="1.0.5"; sha256="1ymj4y0a8pd0r15bsqilm03b2n0a633ibzzp2h0qkv880xqbikz4"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr RCurl reshape2 scales stringr XML]; }; + primerTree = derive2 { name="primerTree"; version="1.0.6"; sha256="1w2xmmpqsp8plwsacfknkjkgs4x1fksrks614jwlg6fll4zxh42n"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr reshape2 scales stringr XML]; }; primes = derive2 { name="primes"; version="1.1.0"; sha256="0dy0pir88mblcm8g8mrgxs6fynayqgkcr4g40ghqincwzjd97xlv"; depends=[Rcpp]; }; princurve = derive2 { name="princurve"; version="2.1.6"; sha256="0wzk329bxljkzz57y220lsfckpsn45w348m6dcxh29zbj0ik65h2"; depends=[Rcpp]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; @@ -14627,7 +14660,7 @@ in with self; { processcheckR = derive2 { name="processcheckR"; version="0.1.3"; sha256="14d8148zcnyh9ycqy5nyszrafq3mgck87w80kx2apg52gkdaq18g"; depends=[bupaR dplyr edeaR glue rlang stringr]; }; processmapR = derive2 { name="processmapR"; version="0.3.4"; sha256="0kq940j8frmbal1nqxwv7wshkyv7y3vhax6zr0ngkf18xv73y76z"; depends=[BH bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms htmltools miniUI plotly purrr RColorBrewer Rcpp rlang scales shiny stringr tidyr]; }; processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; }; - processx = derive2 { name="processx"; version="3.5.2"; sha256="0azw8sx6nv6pp8m8jrwq01b9na2swrnznn7dwrhn07268w82svzd"; depends=[ps R6]; }; + processx = derive2 { name="processx"; version="3.5.3"; sha256="0ail3w8n5g1ibdamgpxcfpla18kqkilmppiasm7ms67cavx2k5k7"; depends=[ps R6]; }; procmaps = derive2 { name="procmaps"; version="0.0.4"; sha256="0mxg478fw068ngn01hdrjcdc0v3wn4szk7x60a10i2c68fnyqf2k"; depends=[]; }; prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; }; prodigenr = derive2 { name="prodigenr"; version="0.6.1"; sha256="1skjznwi6yipdcfbby1jzl8ng42hbn5zb9z31yxrp0ljhx1g0y70"; depends=[cli fs rlang rmarkdown rprojroot whisker withr]; }; @@ -14641,7 +14674,7 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.9.1"; sha256="033c036ck273zxg0k7qjcvgxm5k05gjxrvnqvyw7hh9g4lgh8824"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.9.2"; sha256="1fygf5hn8wqbv4xpg4cqxfa1a887bhjx2y5iv84rfvzsb6h9ac7r"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; @@ -14653,7 +14686,7 @@ in with self; { projections = derive2 { name="projections"; version="0.5.4"; sha256="1c7fm2f3fx0905afw3nrbv6vv0a0awpml1rl2kaxnijjgqcxa6dg"; depends=[ggplot2 incidence]; }; projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; - projpred = derive2 { name="projpred"; version="2.0.2"; sha256="0nx514mrfh3gv854pr71w5x3zgdnn0kinf5nh7z90q3h7ysry2mg"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr MASS mgcv optimx Rcpp RcppArmadillo rngtools rstantools tidyverse]; }; + projpred = derive2 { name="projpred"; version="2.1.1"; sha256="170pskvcsyk22xl4q8mklx8nw29miqzb42wajcab7bki8ap1ix46"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; prome = derive2 { name="prome"; version="0.0.0.8"; sha256="1c9jzpapjyfhpxvjw59p7ch99la00c7nhmvdmsxc4fwi0wcj9pb1"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; @@ -14668,8 +14701,8 @@ in with self; { prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; - prospectr = derive2 { name="prospectr"; version="0.2.3"; sha256="1c2p9dy6h6w31v1hviqjr3kkzzzd303s64qhywcjp0ymjvbzlprp"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; - protViz = derive2 { name="protViz"; version="0.7.0"; sha256="0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj"; depends=[Rcpp]; }; + prospectr = derive2 { name="prospectr"; version="0.2.4"; sha256="0hxsm0k5f9gydc9i5952dy3viknai5bi1irkzdvxvcp10wl4piic"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; + protViz = derive2 { name="protViz"; version="0.7.3"; sha256="0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; @@ -14677,7 +14710,7 @@ in with self; { proteus = derive2 { name="proteus"; version="1.0.0"; sha256="0kasp1mmhzh8rkvxxcq44wcn9fg6q85wr3albxwi0cav0kkxhkzh"; depends=[abind actuar bizdays dplyr fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr readr scales stringr tictoc torch VGAM]; }; proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; - protoclust = derive2 { name="protoclust"; version="1.6.3"; sha256="1jwfzlxyi2mx3mry2xr2glc6fm6a9jc8fhsdzjbb4zgx7vx2vpqv"; depends=[]; }; + protoclust = derive2 { name="protoclust"; version="1.6.4"; sha256="0cbl9jxdc2j4z5viczl70zcd9z83qlipvkqi5f2bpypyvi2s0xs1"; depends=[]; }; protolite = derive2 { name="protolite"; version="2.1.1"; sha256="0g1r3lzmvx1w44qzqzdvxfn21zmz11srlp6cr76kd7pd5wzjv82p"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; @@ -14688,7 +14721,6 @@ in with self; { provExplainR = derive2 { name="provExplainR"; version="1.1"; sha256="1jgxmpzgigpbdqh3r8gy6h0akv11ssl494h2jscdyb8zpjmc92fg"; depends=[diffobj digest dplyr provParseR stringr]; }; provGraphR = derive2 { name="provGraphR"; version="1.0"; sha256="0s2hj8j3rjig37wpjlr2fgw2klwr6a26mxrnk1lq5d9262x6v3aa"; depends=[igraph Matrix provParseR]; }; provParseR = derive2 { name="provParseR"; version="0.3"; sha256="0cmyb6da9l0822xrzni19r1ha6zzya385hk2ym9rmchvb34lax53"; depends=[jsonlite]; }; - provSummarizeR = derive2 { name="provSummarizeR"; version="1.4.2"; sha256="1pfnrvgqzpdhrsyh0y75idwj13zgcdj7ql6frpjmc0f5cggv7q1q"; depends=[dplyr provParseR]; }; provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; provViz = derive2 { name="provViz"; version="1.0.8"; sha256="0zdfvr9mj2d7h20ahq2fksqqjg6isbhhf4kwg2brxb5fcb9462a4"; depends=[]; }; provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; @@ -14733,9 +14765,9 @@ in with self; { pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; psycModel = derive2 { name="psycModel"; version="0.3.2"; sha256="0yb826sc8xajbai7x6p0ryvas3jizn3n8j0y7blykb4vhvcabq3x"; depends=[dplyr ggplot2 glue insight lavaan lifecycle lme4 lmerTest parameters patchwork performance psych rlang stringr tibble tidyr]; }; - psych = derive2 { name="psych"; version="2.1.9"; sha256="032h33i2qlwsw2iq82nri5y8hs7d593w40aghcvnibpi2wxf0x8l"; depends=[lattice mnormt nlme]; }; + psych = derive2 { name="psych"; version="2.2.3"; sha256="0fi7gcaxcb1mdyfpgjm03sxz3qgp1s0hnrgx8pyswni5skb903pn"; depends=[lattice mnormt nlme]; }; psychReport = derive2 { name="psychReport"; version="3.0.1"; sha256="0mii4n24dfc8rh6jz81sil2wn9ml6vdaqn5m8caf3glv9k0v812c"; depends=[broom cli dplyr ez xtable]; }; - psychTools = derive2 { name="psychTools"; version="2.1.12"; sha256="0fqxlggbhi5g016vyiby8g42ll0080fig15p689cas2ydwn5zklk"; depends=[foreign psych]; }; + psychTools = derive2 { name="psychTools"; version="2.2.3"; sha256="055wj4vx3aybraf7b9picpylawim2681bcgb6ad85gs07s1xin87"; depends=[foreign psych]; }; psychmeta = derive2 { name="psychmeta"; version="2.6.2"; sha256="0yacf2d2svb95a95cxa37szxpags156kwmn5knpfyn4hgbwp390g"; depends=[boot curl dplyr ggplot2 mathjaxr metafor progress purrr rlang tibble tidyr]; }; psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; @@ -14744,7 +14776,7 @@ in with self; { psychotree = derive2 { name="psychotree"; version="0.15-4"; sha256="0ni8ajl0hzl4spm71c0myhv16an00j0brb4gyzg2fgkqs6rm34l2"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; psychtm = derive2 { name="psychtm"; version="2021.1.0"; sha256="1qx3ks23wyi7c53p05jq2w18qz0kym0j43japz9sgj6zyh0c5649"; depends=[coda label_switching Rcpp RcppArmadillo RcppProgress rlang tibble]; }; - psymetadata = derive2 { name="psymetadata"; version="1.0.0"; sha256="16xcjxa8h7x58ssvdmiy1byxxmppmxjgf9m5xacm6w1nyw062jd5"; depends=[Rdpack]; }; + psymetadata = derive2 { name="psymetadata"; version="1.0.1"; sha256="1m1b1fhiv31hjc7iy20c065w25mgzmsbp0vlh2vlzrlqmfw0qpwv"; depends=[Rdpack]; }; psymonitor = derive2 { name="psymonitor"; version="0.0.2"; sha256="09288w2bk5jhnbyj516jqn5qb33yqqg5kqbg6ylqk7anlq2yg2sl"; depends=[doParallel foreach magrittr]; }; psyntur = derive2 { name="psyntur"; version="0.1.0"; sha256="0dh7vdj3ynsxibcf0wmh5h4yknijg78azjzlma25glihpgd2nbbw"; depends=[dplyr effsize ez fastDummies formula_tools GGally ggplot2 ggthemes magrittr plyr psych purrr rlang tidyr tidyselect]; }; psyphy = derive2 { name="psyphy"; version="0.2-3"; sha256="1cf134l5j7ggclr08jb5vrj4jv4gq9s1b3njj0ic4263xg8wvv6n"; depends=[]; }; @@ -14753,7 +14785,7 @@ in with self; { ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; ptm = derive2 { name="ptm"; version="0.2.5"; sha256="0q3j081fhs0pin8zx6m280hc000cdf9dmbmilyf88c0ryd1cx5bb"; depends=[bio3d Biostrings curl httr igraph jsonlite muscle RCurl seqinr xml2]; }; - ptmixed = derive2 { name="ptmixed"; version="1.1.1"; sha256="12yjm73grs14gzwnh61qp0vzbikmwfl1f26s9xfclsp6g61k3rzg"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; + ptmixed = derive2 { name="ptmixed"; version="1.1.2"; sha256="0q17xxxl0kd2k5qj2b9srfmhrbjzk0bkb6a1biasaq2inzgy29jn"; depends=[GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; }; ptspotter = derive2 { name="ptspotter"; version="1.0.1"; sha256="1yppjmsxx01n9x0a0bbqsaxjixvrzyjq3112p94igg2xpp6h6cvl"; depends=[beepr log4r pryr stringr this_path]; }; ptsuite = derive2 { name="ptsuite"; version="1.0.0"; sha256="1df273p8v6zvhy2jj6imhjigwj77grx6sxqmg0sidxwqny5d1d9c"; depends=[Rcpp]; }; @@ -14762,7 +14794,7 @@ in with self; { ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; pubchunks = derive2 { name="pubchunks"; version="0.3.0"; sha256="14jzl0ra0d68s246a9jhfgp1wyy9g7d0rzahvl97crkklld1crvx"; depends=[data_table rcrossref xml2]; }; - pubh = derive2 { name="pubh"; version="1.2.5"; sha256="0gqiqrj1w4arwlfvwllghdq5p85yl0aqabfij54wgvgs34nfmqjb"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 gtsummary Hmisc huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc sjPlot survival tibble tidyselect]; }; + pubh = derive2 { name="pubh"; version="1.2.7"; sha256="0l87x8mnjssvbcwsm48gsn2mmidkhk7gzy5x2v6qrcxcxw32pm68"; depends=[car dplyr emmeans Epi epiR epitools ggformula ggplot2 gtsummary Hmisc huxtable lmtest magrittr moonBook sandwich sjlabelled sjmisc sjPlot survival tibble tidyselect]; }; publipha = derive2 { name="publipha"; version="0.1.1"; sha256="0ssmkz4bbrp5yvqb2da0i6shzm59ydw2sqkmqkid039782sibjch"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.19"; sha256="0yh4gjhh7nw5vh3ksay2z5pgskmasbagzbgb3bfxch9b6arv6kgc"; depends=[boot R2HTML RCurl RJSONIO XML]; }; pubmedR = derive2 { name="pubmedR"; version="0.0.3"; sha256="153br94iqayrvvgzrzx0r3ilcrmnznfdnzk8yaii01s8i1g1wxcd"; depends=[rentrez XML]; }; @@ -14772,13 +14804,13 @@ in with self; { pulsar = derive2 { name="pulsar"; version="0.3.7"; sha256="0gafp8mcp34c1j93sixy3413c32vn0xy8vhxm0b8v2mznbizgjbq"; depends=[Matrix]; }; pulseTD = derive2 { name="pulseTD"; version="0.1.0"; sha256="0sdnswinpnm0vvplrh5gl9gx4p03dx175mqxzg5r52rkzd3rfbsr"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicFeatures ggplot2 Rsamtools S4Vectors SummarizedExperiment]; }; pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; }; - puniform = derive2 { name="puniform"; version="0.2.4"; sha256="0v2977y9cwjx74xk0ig745g09wn7nrcsrg4f6v315sglsm18iaa8"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; + puniform = derive2 { name="puniform"; version="0.2.5"; sha256="1zw8qbqnyhyvzrw6izrqgnmbawcqg2jdhcb8lxs1rd8y7cn4v4wj"; depends=[ADGofTest metafor Rcpp RcppArmadillo]; }; pureseqtmr = derive2 { name="pureseqtmr"; version="1.2"; sha256="1c2pcci3s949hi8hh0h03mr3m6qw3kvihfglwavx578kjm2qw0xz"; depends=[ggplot2 plyr rappdirs stringr tibble]; }; purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; }; purgeR = derive2 { name="purgeR"; version="1.4"; sha256="0awcpk061q4bmfxk920n6dmba79s18mrwvzdd4zdfl5fqsb7iydb"; depends=[doSNOW foreach progress Rcpp RcppProgress]; }; purging = derive2 { name="purging"; version="1.0.0"; sha256="1b8f87jn6wyh4fp6b1660bd484wcf7xiajdg9dz2594aj1r94qsr"; depends=[MASS]; }; purrr = derive2 { name="purrr"; version="0.3.4"; sha256="1cj091rsjdj2xz16qhynyw72gh5cyhznifcfbrbygndfr4xwksr3"; depends=[magrittr rlang]; }; - purrrlyr = derive2 { name="purrrlyr"; version="0.0.7"; sha256="03472xz0q30vjg45xv24zkd9b1w8ggi33vchxrimfnppdiqi3x0m"; depends=[BH dplyr magrittr purrr Rcpp]; }; + purrrlyr = derive2 { name="purrrlyr"; version="0.0.8"; sha256="0ql08dka07wi1cxjcn12pxj00j0cm112074l7byj9vmi3rlqynh8"; depends=[dplyr magrittr purrr Rcpp]; }; pushbar = derive2 { name="pushbar"; version="0.1.0"; sha256="1gxarv6x32y6ssrhsq3pyihzcvpnnj7bg0jf2cpcr99da78n1d9b"; depends=[jsonlite shiny]; }; pushoverr = derive2 { name="pushoverr"; version="1.1.0"; sha256="05ma76jhk00m9872f7gb0vwmk2q3l79r1ddaf1slbhgd57l1avk2"; depends=[checkmate cli glue httr rlang]; }; puzzle = derive2 { name="puzzle"; version="0.0.1"; sha256="073n074irsvn4w1jy5xmr6l24a209kn0ypvf1d2zn3p6yd93wzss"; depends=[dplyr kableExtra lubridate plyr readr readxl reshape reshape2 sqldf tidyverse]; }; @@ -14792,7 +14824,7 @@ in with self; { pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pwr = derive2 { name="pwr"; version="1.3-0"; sha256="1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v"; depends=[]; }; pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; }; - pwr2ppl = derive2 { name="pwr2ppl"; version="0.3.0"; sha256="0ffwsldx9xplf2lqzi0m5a0715437c4g3352r8408n1p53lj2scd"; depends=[afex broom car dplyr ez lavaan lmtest MASS MBESS nlme phia quantreg semTools tidyr]; }; + pwr2ppl = derive2 { name="pwr2ppl"; version="0.4.0"; sha256="03gk36g8rbkf0cj47pkx8m30n2vncmq8x1qk2389vz4crplmc6pr"; depends=[afex broom car dplyr ez lavaan lmPerm lmtest MASS MBESS nlme phia pls quantreg semTools tidyr]; }; pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="2.8.9"; sha256="16qlxwhljhf878a7jif2kjj7hvga01bgr8zb6bh555yacxxh4yiz"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; @@ -14801,7 +14833,7 @@ in with self; { pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; pwt9 = derive2 { name="pwt9"; version="9.1-0"; sha256="0m2df89lali9945avcv4gdjpxch9in7vdd042nx0q8nv0alb4ijd"; depends=[]; }; pxR = derive2 { name="pxR"; version="0.42.4"; sha256="1r0ffr5wxf67i1jh67v06vcmifw4hhhasd4aivic94bkvq4sqmn5"; depends=[plyr reshape2 RJSONIO stringr]; }; - pxweb = derive2 { name="pxweb"; version="0.12.0"; sha256="0xg20yxc2fl31rqs92m4slc1b0q7vwpqnjv6hh0v4bybgw02qvr1"; depends=[checkmate httr jsonlite]; }; + pxweb = derive2 { name="pxweb"; version="0.13.1"; sha256="076747aj3rr8r3hn9lki66xl2flqylxqhqp9iyx120rjp9bfzmbr"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyinit = derive2 { name="pyinit"; version="1.1.2"; sha256="0i5l9rm8gkkabsqxkl0gvrpsbz7im0lk0axz1c0m0lq2vlrw9jsq"; depends=[robustbase]; }; @@ -14825,7 +14857,7 @@ in with self; { qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; qccrs = derive2 { name="qccrs"; version="0.1.0"; sha256="0lwrmf2809zzdj5f25bb1psh57ibyw90ra41fy2i9vjmgph9wgiq"; depends=[dplyr magrittr purrr tibble]; }; qch = derive2 { name="qch"; version="1.0.0"; sha256="1kizr319kjr6xsgz7n0dhgp8rxr4j1x4bcr5cnifkp6z2zh92vka"; depends=[ks mclust]; }; - qcpm = derive2 { name="qcpm"; version="0.1"; sha256="08y02wdmnjlv5r1li3dm2g9hzbl0jm7krb4q5r9q4nf4fvbsm50m"; depends=[broom cSEM quantreg]; }; + qcpm = derive2 { name="qcpm"; version="0.2"; sha256="0k440xi951v6jaknwz0x0rwkin1r034l2i93cchlglf0r9a0l8yc"; depends=[broom cSEM quantreg]; }; qcr = derive2 { name="qcr"; version="1.4"; sha256="14nilw60p2kcabh9w5k8bvdjqx4lm5lj79qiigg3i372byq5gb7r"; depends=[fda_usc MASS mvtnorm qcc]; }; qcv = derive2 { name="qcv"; version="1.0"; sha256="0hf02l9c1cpzs02mfn9swfc8l635qsvh6xrhj21g19h5rxaf8jwg"; depends=[]; }; qdap = derive2 { name="qdap"; version="2.4.3"; sha256="1fadzq7afavxfhcd8q6xy3g8d7jwy24zz1da2ig9bd8vrk5zjmnx"; depends=[chron dplyr gender ggplot2 gridExtra igraph NLP openNLP openxlsx plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reshape2 scales stringdist tidyr tm venneuler wordcloud XML]; }; @@ -14836,7 +14868,7 @@ in with self; { qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; qgam = derive2 { name="qgam"; version="1.3.4"; sha256="1jyamamdffaks89rspyhmg18b4iik0nb1j0vgqzvfnm890514cvn"; depends=[doParallel mgcv plyr shiny]; }; qgcomp = derive2 { name="qgcomp"; version="2.8.6"; sha256="00wfslhj7hm5qgpbz8zg4a3dwrbvnn0g6m0vcq56mjvfinnip8aw"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; - qgcompint = derive2 { name="qgcompint"; version="0.6.6"; sha256="13r0nzxwz9w5papxiqkxjw594qljpqqxw1wkrhj2n68ykvbvl1n7"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; + qgcompint = derive2 { name="qgcompint"; version="0.7.0"; sha256="0v2b7rr6m5mx3wyclbryxlcdly1a2vj8z0ywsyq4vvj66g2aa0yk"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.0.4"; sha256="1xyviy73jl76bpv5izlkgf171qrypgv2wm5mi3s06cb7md8psrkb"; depends=[data_table MASS MCMCpack statmod]; }; qgraph = derive2 { name="qgraph"; version="1.9.2"; sha256="0r225b7rnsv6wz41ij0msmqr1xy0iqxh9dbsvjixbi1hvgv91wds"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; @@ -14858,8 +14890,8 @@ in with self; { qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qpdf = derive2 { name="qpdf"; version="1.1"; sha256="03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; - qqboxplot = derive2 { name="qqboxplot"; version="0.1.0"; sha256="0807ww7cvc84hmwrwp2q5gy6v0qd01mwhj537403iy9z4z3wsvhv"; depends=[ggplot2]; }; - qqconf = derive2 { name="qqconf"; version="1.2.1"; sha256="195m60wy065yfp3x18hkxn6sr75igg9bcq0rgn8qcfyz4hc2pmgf"; depends=[distr dplyr ggplot2 magrittr MASS Rcpp rlang robustbase]; }; + qqboxplot = derive2 { name="qqboxplot"; version="0.2.0"; sha256="0v83kjkq674ql55d9dfyw4bgybbqyvqivphn925a7wl9zqi1b3lh"; depends=[ggplot2]; }; + qqconf = derive2 { name="qqconf"; version="1.2.3"; sha256="0qnfzq2zb776kmvbwmyj9di4nlzx7dg0nz4097hfcllfx9160nwv"; depends=[dplyr magrittr MASS Rcpp rlang robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.8"; sha256="1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.5"; sha256="1ija4ik3bc404yjm5pw4y32krs1gxn6jd05pqmc0ajawydvr4w1r"; depends=[dplyr ggplot2 MASS robustbase]; }; qqr = derive2 { name="qqr"; version="0.0.1"; sha256="1vi4nbm356vahm4hnvy686nysbn4n63p9cjd4i9dm73lhsf9ilmn"; depends=[dplyr rvest stringr tidyverse xml2]; }; @@ -14916,12 +14948,12 @@ in with self; { qualtRics = derive2 { name="qualtRics"; version="3.1.5"; sha256="11gb9ri3c5553fl9im8m26p16c8araxl4lyqk66b352cx41cf4x9"; depends=[assertthat dplyr glue httr jsonlite lifecycle lubridate purrr readr rlang sjlabelled stringr tibble tidyr]; }; qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; qualypsoss = derive2 { name="qualypsoss"; version="1.0.0"; sha256="1pvf9b9yw8317wnh1x1jkmwl4cl0r9q7npfw0xzgbs8mfpl9j2ah"; depends=[doParallel foreach MASS mvtnorm]; }; + quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; - quantdr = derive2 { name="quantdr"; version="1.2.0"; sha256="03dhcb5p9kkyl6qvpxbsjlrnjq0970xcr62j15jyhi878llzqk2n"; depends=[dr KernSmooth MTS mvtnorm quantreg]; }; quanteda = derive2 { name="quanteda"; version="3.2.1"; sha256="102wlx6481fskgdr5wv467n29f666q0qg9kjm0ivqfg9xsbvza12"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.4"; sha256="0r2nls93nriw97z0rmmpn2bb8c3jr571hv5slqj68p7ibr06rh1h"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; - quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94"; sha256="1as7mpy3ihja5d9nw7c30w0yhaklpmn41bgw2cvpic2rbp5828fa"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; + quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.1"; sha256="0h17dp3p26fm4i60yi4ncijwc2lazklnls8q1v2vkk76726l67w4"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.95"; sha256="100125n2l3mhj0clbwpy3cbb84mwf83ix2c67sy8lmmh71vxz2rk"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; @@ -14936,7 +14968,7 @@ in with self; { quantregGrowth = derive2 { name="quantregGrowth"; version="1.4-0"; sha256="0fw8kdgnlvb9c0xnankmzlpk9qnk52rqrrby32a02mz2f93ddh7k"; depends=[quantreg]; }; quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; }; quantspec = derive2 { name="quantspec"; version="1.2-3"; sha256="0ifwq2jmvxhpijz9yd9hffkff6ixcliaqkp9ispp9k1b8icwi8zn"; depends=[abind quantreg Rcpp snowfall zoo]; }; - quarks = derive2 { name="quarks"; version="1.0.11"; sha256="0zky5gxp9y457b833g3smc9hd875lc1kdnn94p0ykw3lcj9202pd"; depends=[rugarch]; }; + quarks = derive2 { name="quarks"; version="1.1.0"; sha256="1qms919w0y4p8lk8srk1ccnmn6i44jpyz32arqazjiap229h3kfy"; depends=[progress rugarch smoots]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; quarto = derive2 { name="quarto"; version="1.1"; sha256="1j32kahfkca0kz2akah6jg2n1f04ck4y6irjv77s7ar61m5an054"; depends=[jsonlite later processx rmarkdown rstudioapi yaml]; }; queryparser = derive2 { name="queryparser"; version="0.3.1"; sha256="1pz66f3wxvvv42l5hib7hbpy14s8a13gn0n57vf6v5zdnz423kdr"; depends=[]; }; @@ -14945,11 +14977,11 @@ in with self; { queuecomputer = derive2 { name="queuecomputer"; version="1.1.0"; sha256="1lzc0hfva8dpz2q5g0abjc2avyqdffi8g1qi5h6mvx8qn5kx7bmw"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; queueing = derive2 { name="queueing"; version="0.2.12"; sha256="0hw1ykm24cjpfwh7ac7fjf7mhc59mq8wy2g07aacpy5ibwi8bbsf"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; }; - quickNmix = derive2 { name="quickNmix"; version="1.0.3"; sha256="02qirbhggz2749k07ylqfdybzfly11r8pkylzz90zyndz5089r4j"; depends=[doParallel foreach]; }; + quickNmix = derive2 { name="quickNmix"; version="1.1.1"; sha256="01gnvnpfxry354qf772m187mfvjigqngjpi1k9y1g5nvlv7a4d62"; depends=[doParallel foreach optimParallel]; }; quickPlot = derive2 { name="quickPlot"; version="0.1.6"; sha256="0mffialxdim8f5s0bw9bb7p8dbrfdgq1wqih441x27lnmrvhlsa8"; depends=[backports data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; }; - quickcheck = derive2 { name="quickcheck"; version="0.1.0"; sha256="005xv322bsmjkrfwsj21j3pci868yac9wbgzxnwl4bmcf81ri09v"; depends=[data_table hedgehog hms purrr testthat tibble]; }; + quickcheck = derive2 { name="quickcheck"; version="0.1.2"; sha256="060pas64vzgqr038d1ab36h69z6rk6xaqf6kydwcs2phhir67zyc"; depends=[data_table hedgehog hms magrittr purrr testthat tibble]; }; quickerstats = derive2 { name="quickerstats"; version="0.0.1"; sha256="0jlczz042701p6j4m60k425m9x3q88m27mmf62ngz80dylcl2fdx"; depends=[curl httr readr tibble]; }; quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; }; quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; }; @@ -14985,7 +15017,7 @@ in with self; { r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; r2rtf = derive2 { name="r2rtf"; version="0.3.3"; sha256="1a6hbx9cjak2fv5khhq0k4j583qn24sbs5bykz86z530rbwbrc8y"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; - r2spss = derive2 { name="r2spss"; version="0.3.0"; sha256="1an0h4zpy0hjnwn6pihchfmbvkzjqd3vdzqnl1hxvs053z5i9549"; depends=[car ggplot2 scales]; }; + r2spss = derive2 { name="r2spss"; version="0.3.1"; sha256="0vc0sk80fsabj4ialfpygzbwdl4a263gqyrqlrf817hm95mvb9vh"; depends=[car ggplot2 scales]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="0.1"; sha256="1i4sd015dgkv5i89d0cphp3jmn4jn4wqfazklfglysf85b2cm4iw"; depends=[]; }; r3PG = derive2 { name="r3PG"; version="0.1.3"; sha256="188vjzjya3qxi2xgzxxvf6ys97yxgdbjivwc54f4as37k2ad7l6p"; depends=[]; }; @@ -15004,7 +15036,6 @@ in with self; { rAmCharts = derive2 { name="rAmCharts"; version="2.1.13"; sha256="1c9gz7jmkh8gfaq8lmcb66kavdldnlc3x1mc1c72di8zxcpgzprc"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml zoo]; }; rAmCharts4 = derive2 { name="rAmCharts4"; version="1.5.0"; sha256="0z7dq8nhivrf3lhwv0zwyjnalnbl23qw02fg0ml883ns9rdi78rz"; depends=[base64enc htmltools htmlwidgets jsonlite lubridate minpack_lm reactR shiny stringr xml2]; }; rAverage = derive2 { name="rAverage"; version="0.5-8"; sha256="09yap3qv02k5nidi6a4png9xa5yy7cb8hg8s2dq99wnc88s42d26"; depends=[]; }; - rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; rBDAT = derive2 { name="rBDAT"; version="0.9.8"; sha256="0a64y43fadn5i1pgd6z5mvs1v3v0k0x8wrl5yf7xgw50n0zajfi7"; depends=[]; }; rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; @@ -15013,6 +15044,7 @@ in with self; { rCAT = derive2 { name="rCAT"; version="0.1.6"; sha256="09jyjjbhpm44wrism3zgg56m01yimlcm3xks8g0cq36lsrclcigp"; depends=[pracma rgdal sp]; }; rCBA = derive2 { name="rCBA"; version="0.4.3"; sha256="10rc08gwsf15f4lci8bbgwpwj8n7k1m23hxk633v68g9amla5nvx"; depends=[arules R_utils rJava TunePareto]; }; rCMA = derive2 { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; + rCNV = derive2 { name="rCNV"; version="1.0.0"; sha256="1lrnwrxy0qila1y64bmfvid51p46scnrbasqndmmcisd43schd6f"; depends=[colorspace data_table qgraph R_utils]; }; rCRM = derive2 { name="rCRM"; version="0.1.1"; sha256="03p2v1wb7hsvfhdcgawaz8vd2i8kh30dj8mjydlaywxyks6i5caz"; depends=[Rcpp RcppEigen]; }; rChoiceDialogs = derive2 { name="rChoiceDialogs"; version="1.0.6"; sha256="0lp8amdalirpsba44aa3r31xnhmi36qb9qf8f8gdxxbarpgprsbi"; depends=[rJava]; }; rClinicalCodes = derive2 { name="rClinicalCodes"; version="1.0.1"; sha256="1p4p8r2n0k8h9xdzbngb95rshjp3376f5lsx228biqmswhpkhvlf"; depends=[RCurl rjson stringr tm XML]; }; @@ -15022,9 +15054,9 @@ in with self; { rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; - rEDM = derive2 { name="rEDM"; version="1.10.2"; sha256="1cg4g47q6vl231279zmaq6w743gcxj05xa9kf47wf3hzp01lhl1r"; depends=[Rcpp RcppThread]; }; + rEDM = derive2 { name="rEDM"; version="1.10.3"; sha256="0ygjw7ci44bki98annci69mrzpp6ssgqg3sg6qpcipf90md72b2g"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.1.0"; sha256="18bpskhrafj0b5rnzisrsk5x5gifqn7dpawcsgdrg7rbnz7y1wzr"; depends=[cluster clusterGeneration igraph MASS proxy]; }; - rENA = derive2 { name="rENA"; version="0.2.3"; sha256="067xpw1mgb2y15ld4qc6mnf4b9k7nw8am9qz4ms980wyfp4ffjmj"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; + rENA = derive2 { name="rENA"; version="0.2.4"; sha256="0yfmdfw45azyzcy7rf5xsannrlranbxpgfsb52rl6vvd681p4r4x"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFIA = derive2 { name="rFIA"; version="1.0.0"; sha256="13c50hn8fna9f5zwxp3nzpzvgv8aw5a5pxkpw6600yhmg1nmrwgp"; depends=[bit64 data_table dplyr dtplyr ggplot2 rlang sf stringr tidyr tidyselect]; }; rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; @@ -15041,9 +15073,9 @@ in with self; { rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; }; rJava = derive2 { name="rJava"; version="1.0-6"; sha256="1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472"; depends=[]; }; - rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; }; rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.1"; sha256="0zs7a75hgrj4ajbbxn0kmc2871rakyizhwdn7ryha8bgig4ld3cs"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; + rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; rLFT = derive2 { name="rLFT"; version="1.0.1"; sha256="0d86z5ckhkavgr2xi9pk7pw8ss3whrssa7na43kj0pirax9cys4z"; depends=[Rcpp sf]; }; rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; @@ -15072,7 +15104,7 @@ in with self; { rSAFE = derive2 { name="rSAFE"; version="0.1.3"; sha256="0vhphn56y2yxll3437mb3zaayhhy4dxk0wxxy7lk6qgxw4xlbk04"; depends=[DALEX dendextend ggplot2 ggpubr ingredients sets]; }; rSCA = derive2 { name="rSCA"; version="3.1"; sha256="0dhd5325x05cbnw34mlipndw5xnncl9kj7kppb2s5bx2gllcdqqd"; depends=[]; }; rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; - rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; + rSFA = derive2 { name="rSFA"; version="1.5"; sha256="17jabv64rgaxs5kx579vjrhcw2k08c6ah6a11cswl8v9h0vjjz8i"; depends=[MASS]; }; rSHAPE = derive2 { name="rSHAPE"; version="0.3.2"; sha256="0z6dizsxlkmaymbd24b1m1i8kmndcf21nxxnyfzq6gvdii7bal4h"; depends=[abind DBI doParallel evd foreach RSQLite sn VGAM]; }; rSPARCS = derive2 { name="rSPARCS"; version="0.1.0"; sha256="0k46nhkdn68c7h7bbbdfwl02bldi1m3m62zbp20kh8np9bxy1rnk"; depends=[data_table geosphere plyr raster sp spatialEco tigris]; }; rSPDE = derive2 { name="rSPDE"; version="1.1.1"; sha256="0zji1d292nr8bj149vdk0v48jcg6w56cbxr5xhfm7s5b999qrqxf"; depends=[Matrix]; }; @@ -15080,7 +15112,7 @@ in with self; { rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; rTG = derive2 { name="rTG"; version="1.0.0"; sha256="1v2wj2cv26hk5s7vm2l75lqgki28ivhkd0b8kspxw2c56cm82r70"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; - rTRNG = derive2 { name="rTRNG"; version="4.23.1-1"; sha256="0jlkr57afkg6axkdk020rd3nybx1qzwvy1hjgfw8fwvm79x0kpr7"; depends=[Rcpp RcppParallel]; }; + rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.4.8"; sha256="1ks4rwaish24sg5gc2jkfdqfq6h8gh9f3wdxk3dxjgpwjqwijz8f"; depends=[]; }; rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; }; @@ -15157,7 +15189,7 @@ in with self; { rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.4"; sha256="102z7ysbw0i1mbnwg0v3h0i094ksw91q84a53qyxndq4m6f557aj"; depends=[dplyr jsonlite MASS raster rgbif rgdal rgeos shiny sp spatstat spocc spThin]; }; rangemap = derive2 { name="rangemap"; version="0.1.18"; sha256="17ycliswmsrc1rvyxj2ik2rs7f061dvam6ck0pm6myj52m2xg781"; depends=[concaveman dplyr maps maptools raster rgdal rgeos rgl rnaturalearthdata scales sf sp spatial]; }; ranger = derive2 { name="ranger"; version="0.13.1"; sha256="02idcc6zbdz4wsi1mcwh7qyhmlbwvnzxwkdvvppxw7n2rh54z4v0"; depends=[Matrix Rcpp RcppEigen]; }; - rankFD = derive2 { name="rankFD"; version="0.1.0"; sha256="1qqdqbyr0kgjn83prfg5b5f5qsfs0gxxadzkxzd76s0yhryps6mm"; depends=[coin lattice MASS multcomp mvtnorm]; }; + rankFD = derive2 { name="rankFD"; version="0.1.1"; sha256="0p8kkscjnfssz58gp2kvpvw206vhqi6m1rknzs35l5ajck3gqzrm"; depends=[coin lattice MASS multcomp mvtnorm]; }; rankUncertainty = derive2 { name="rankUncertainty"; version="1.0.2.0"; sha256="0w9b3vdlx2kjviz4790lrmbzb8i1lrckiy1jxzl9kxycp1kjqkwa"; depends=[cpp11 magrittr Rcpp]; }; rankdifferencetest = derive2 { name="rankdifferencetest"; version="2021-11-25"; sha256="11isc6fjaicyibnbc315036wp7m670ja6kg4xq5s2x72k076v55f"; depends=[coin modeltools Rdpack]; }; rankdist = derive2 { name="rankdist"; version="1.1.4"; sha256="1xqrkss8d5vv3blqpvrvdczsygphbx259hy9j7w9b2ahssw8cjr5"; depends=[hash optimx permute Rcpp]; }; @@ -15171,7 +15203,7 @@ in with self; { rapidxmlr = derive2 { name="rapidxmlr"; version="0.1.0"; sha256="14pa08yp8xmbqk8wwinz1xsphx75xq6vg8zgzcxc5zgmcf0ja5if"; depends=[]; }; rappdirs = derive2 { name="rappdirs"; version="0.3.3"; sha256="1161i3jgjvzjv4p8qbz9r976fnggkcrw3mlj4yd1h2svnijrz5a9"; depends=[]; }; rapport = derive2 { name="rapport"; version="1.1"; sha256="14cbi3yag91lnr1yrbk8ra6j615z5a6h136dj3r6v628qahrhmsg"; depends=[pander rapportools stringr yaml]; }; - rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; }; + rapportools = derive2 { name="rapportools"; version="1.1"; sha256="0qr86idng12g6hdd764j0wmli700v7rjhw7jdjxj0ka8xm5v7ymm"; depends=[MASS pander plyr reshape2]; }; rappsflyer = derive2 { name="rappsflyer"; version="0.2.0"; sha256="1n0h4iqnzb5xr531b6nvqsjx4mpsg1gp85av2b9gqg0wrbzzizm7"; depends=[dplyr httr lgr retry stringr tidyr]; }; rapsimng = derive2 { name="rapsimng"; version="0.3.0"; sha256="1zykznmb6qipkj8yxkf33vrvyqhsp0ajk34hnz7js1zvy5n8rd5l"; depends=[dplyr jsonlite magrittr rlang tibble tidyr]; }; raptr = derive2 { name="raptr"; version="0.1.7"; sha256="1gm99nnvn3b9xz6216masv7ji8j8vrkprzprkba5y1h22gzwxd3n"; depends=[adehabitatHR assertthat BH boot doParallel ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; @@ -15189,11 +15221,12 @@ in with self; { rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; rasterVis = derive2 { name="rasterVis"; version="0.51.2"; sha256="0kgg6cm7xjqya2d46w0i1i1wjpkb8f99lyqy7rgwa7l9xmwzj5n1"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; rasterbc = derive2 { name="rasterbc"; version="1.0.1"; sha256="17knrhvy2qkdz5bvhnllfkv8w4cm5gjjninwh66pk1xfrqkd4skg"; depends=[sf terra]; }; - rasterdiv = derive2 { name="rasterdiv"; version="0.2-5"; sha256="1jprhbfih2w3wh9ywmnm42yhsyivqacycgzv9hckb2r49d87zlsv"; depends=[foreach progress proxy raster svMisc terra]; }; + rasterdiv = derive2 { name="rasterdiv"; version="0.2-5.2"; sha256="18ywr1xmhyybg1ip5vi9hz9ms5zxfm49z5qprc3wwvxvssva5zg3"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; rasterpic = derive2 { name="rasterpic"; version="0.2.0"; sha256="0vlas1b9la6sp3qkcg831lkfa2n9ms2gq7s0k2wk4lqxmrpq0q66"; depends=[png sf terra]; }; + ratdat = derive2 { name="ratdat"; version="1.0.0"; sha256="1d4ivllasg1yd3i95rsxl3hkyij5r9a3j83scv3ghx6bx7w79aj4"; depends=[]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.3"; sha256="0bnwwkmjsxlv4qkkwq93d7nrqb7pyyd70ffpm98xsxfy1ygdxjqq"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rater = derive2 { name="rater"; version="1.2.0"; sha256="1y4hhcnxdlw17w0ihv108p3rkwwdis7i7vc0rp7l6pfz7an8pw8r"; depends=[BH ggplot2 loo Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; @@ -15202,6 +15235,7 @@ in with self; { ratesci = derive2 { name="ratesci"; version="0.4-0"; sha256="1imraj95vcwz3i6r767zwckjqs1vp7bfww9d792l5nvwi5zyddp4"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-1"; sha256="0xabnqgzl8qdc4x9547mmkr1rm78p3fysdvk6jhjdi8cp2p6kcjh"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; + rattle = derive2 { name="rattle"; version="5.5.1"; sha256="1nhknpdy2a3szcbylg9cq1c1g9ds5y3m35dbbi6rh8r85777qviy"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; }; raveio = derive2 { name="raveio"; version="0.0.5"; sha256="0c17f9cgh453d22lxa2ds5q6si27chk55cyzlmp1klipx4mfq3jp"; depends=[callr data_table dipsaus edfReader filearray fst glue hdf5r ini jsonlite R_matlab R6 remotes stringr targets threeBrain yaml]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; @@ -15210,15 +15244,17 @@ in with self; { rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; rayimage = derive2 { name="rayimage"; version="0.6.2"; sha256="1zhs4whbxvn8gn0ddxpd8qgnv2f75nlvrz6x5y0ac516bgrapz5z"; depends=[jpeg magrittr png progress Rcpp RcppArmadillo]; }; + raymolecule = derive2 { name="raymolecule"; version="0.5.0"; sha256="1dykcm72pqskwfvmvnp0cccg2hlpjcqxhidfq993l1kf2cc0i747"; depends=[httr magrittr PeriodicTable rayrender rayvertex]; }; rayrender = derive2 { name="rayrender"; version="0.23.6"; sha256="05pnj42mqrpkxr59fmap0j9s66aaf6hjsbgmnw4gnaal6x9xxijm"; depends=[decido magrittr png progress purrr raster rayimage Rcpp RcppThread spacefillr tibble]; }; rayshader = derive2 { name="rayshader"; version="0.24.10"; sha256="1wdqbbk8f0vxha0awgfv4c8n7yndy2k1q6f3rkr3f5j84wwqfjbx"; depends=[doParallel foreach magrittr png progress raster rayimage Rcpp RcppArmadillo rgl scales terrainmeshr]; }; raytracing = derive2 { name="raytracing"; version="0.1.0"; sha256="052j053l4104pk7cbkkqrj3kkiip9lv2lf0xl2xsray62n6p07m4"; depends=[ncdf4 sf units]; }; rayvertex = derive2 { name="rayvertex"; version="0.3.3"; sha256="1xigdspf3jybk48i60141kjk34vig9drl7sdn1pi5zsh3pi4w5rx"; depends=[digest magrittr png rayimage Rcpp RcppThread spacefillr]; }; rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; }; - rbacon = derive2 { name="rbacon"; version="2.5.7"; sha256="14j84bkgmxigzj5nk909b89ails7mzys8wk92gvcywv2p9yhwk6b"; depends=[coda IntCal Rcpp]; }; + rbacon = derive2 { name="rbacon"; version="2.5.8"; sha256="10i3kbk8wssh2v7ry37bswf1wxsvg5nxdw4ap58fxcn7wsblzjrk"; depends=[coda IntCal Rcpp]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; - rbcb = derive2 { name="rbcb"; version="0.1.9"; sha256="1vhdbrci803365ik5y6mbpa9wjg7ixz6vbxw78v31irrnn814ish"; depends=[httr jsonlite tibble xml2 xts]; }; + rbcb = derive2 { name="rbcb"; version="0.1.10"; sha256="0qqrb5kvin1ansy3dswdfib2952dlbl7x1zlig3j2mfqcgwn9450"; depends=[httr jsonlite tibble xml2 xts]; }; rbch = derive2 { name="rbch"; version="0.1-1"; sha256="0n2s5qfgjvg7vv65myz6dcmmaf37z883z1sw4hryngz2z6w4zz5q"; depends=[gmp httr openssl rjson]; }; + rbedrock = derive2 { name="rbedrock"; version="0.2.0"; sha256="1hzd0p5nzfshackwlmlzffrpzxrp2mnhk6izb8r605lrxp7laf4v"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; rbenvo = derive2 { name="rbenvo"; version="1.0.5"; sha256="0clg2cxyi60yz2mdp95v0hd5gqhk8h2xgmx68852jcpbjf76xasa"; depends=[dplyr forcats ggplot2 lme4 lubridate magrittr Matrix purrr rlang sf stringr tidyr]; }; @@ -15229,18 +15265,17 @@ in with self; { rbibutils = derive2 { name="rbibutils"; version="2.2.7"; sha256="1iamdbww3hvxy0bbywc307kyhiczx0bvfhw7nngsm33balcng7kw"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.1-0"; sha256="0lmkfr0s90hi06llsa0v4jbcx0jd1dx3qq9h6kb67ws0q6h9y028"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; - rbioapi = derive2 { name="rbioapi"; version="0.7.4"; sha256="1w3mahdrqk76g5ygyabvb8kypycwp91k5njwsqhzyfgj2yr67qkn"; depends=[httr jsonlite]; }; + rbioapi = derive2 { name="rbioapi"; version="0.7.6"; sha256="13wa5642pkndffydklaw81p3avqscw3m82qy65pmfyhlx6d7cj26"; depends=[httr jsonlite]; }; rbiom = derive2 { name="rbiom"; version="1.0.3"; sha256="13nma1s3p4bzh8mvikrnmkqyyrx9axvxavq6fyk2w0j804w1qzcg"; depends=[magrittr openxlsx plyr R_utils Rcpp RcppParallel rjson rlang slam]; }; rbiouml = derive2 { name="rbiouml"; version="1.11"; sha256="1g1q6xc8x8y71ji75c5fl35sxxss964xmhcqlriybb5zc38m1dh0"; depends=[RCurl RJSONIO]; }; rbison = derive2 { name="rbison"; version="1.0.0"; sha256="0g586hsqci4amci10zjq6xpjvxfjr6rv5i63vp85v3z6bkwfamwr"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp tibble]; }; rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; - rbmi = derive2 { name="rbmi"; version="1.1.1"; sha256="09d40aqdzri0364k54zwd5ixh7n7bf16nfjb3jb8bcjcpzqsywsr"; depends=[assertthat BH glmmTMB Matrix R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - rbmn = derive2 { name="rbmn"; version="0.9-4"; sha256="039scbjzigj9ks62l8yagfpr3bpslvxg1nqv22pyw8jay8i6993g"; depends=[MASS]; }; + rbmi = derive2 { name="rbmi"; version="1.1.3"; sha256="1j90s4mjw0vk9jwp3nr25ig72kbsrn0kgdp31gvxyphymllzc2a1"; depends=[assertthat BH glmmTMB Matrix R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + rbmn = derive2 { name="rbmn"; version="0.9-5"; sha256="087i0snzfk5ng944pvy3cqnbib270p0sdmmxk9lp4ab6hi0f7618"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; - rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; }; rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; rbscCI = derive2 { name="rbscCI"; version="0.1.0"; sha256="12r1f4yy5hx0sx1q77yzq3wxhbx8zgj9d1jfpa1hagvwcyd8bdxb"; depends=[BH Rcpp]; }; rbtc = derive2 { name="rbtc"; version="0.1-6"; sha256="1z5p1jn5b0hzwcbdpiwj224h45x01bbsgkskllir5j13l416561p"; depends=[gmp httr openssl rjson]; }; @@ -15254,8 +15289,9 @@ in with self; { rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; rcarbon = derive2 { name="rcarbon"; version="1.4.3"; sha256="18yxliq6bxrrkd6xhlrxbbh017lclsfkvmgq662zy58a6wfjmqxh"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; - rcbalance = derive2 { name="rcbalance"; version="1.8.6"; sha256="140zibpamk9x2xj3ni9p9kgbhxv7rpszlfrvp72854604502zbia"; depends=[MASS plyr]; }; + rcbalance = derive2 { name="rcbalance"; version="1.8.8"; sha256="1kxy3nv9f3qk5azp8d6khd7skk9m4704mdimgzabrndrlb5ihyw8"; depends=[MASS plyr rlemon]; }; rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; + rcbsubset = derive2 { name="rcbsubset"; version="1.1.7"; sha256="0k4jgjwq0mxpxs43010j5ija8hqzwcdqljzxdymji5ndcd2gvwig"; depends=[MASS plyr rcbalance rlemon]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; @@ -15264,7 +15300,7 @@ in with self; { rcdk = derive2 { name="rcdk"; version="3.6.0"; sha256="0v3i1402hrlp3sap3ryjd63gac8wbcwj7lfa3smk1agqy659glcx"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.3"; sha256="16ijvzsc1irpz1z2xd82i2saafsvpn0x5lr54c5gx9bfb35gacyp"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.1.2.0"; sha256="0vsjcg83jvvmwggqh073325wsar6dfa7diikkvq3k0jlfwkcrs4n"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.1.3.0"; sha256="10ybq2m62grn6m1nag7i5da2xb725z1jqd9ky7hcxmlv0n286m5q"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rchie = derive2 { name="rchie"; version="1.0.2"; sha256="1m89mwq5f81yr2vc3wvnxkpm04bad11sx5fllcd3yy8ilghmbfp6"; depends=[jsonlite V8]; }; rcites = derive2 { name="rcites"; version="1.2.0"; sha256="1lyahgpjskzqlmjnz14kkkrl30by1nzzi02wsf0rfskbdhmwc5in"; depends=[cli curl httr jsonlite]; }; @@ -15273,8 +15309,8 @@ in with self; { rcmdcheck = derive2 { name="rcmdcheck"; version="1.4.0"; sha256="1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v"; depends=[callr cli curl desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; - rcompanion = derive2 { name="rcompanion"; version="2.4.13"; sha256="0y5d4z903fj7z326y9alnnlr0hcmxspccv2swra8a4j927csr764"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; - rcompendium = derive2 { name="rcompendium"; version="0.5.1"; sha256="0zg7051c4wg1jbdf7hshswy53y24x8h8myhshvg9z2pg8mvd8sir"; depends=[clisymbols crayon devtools gert gh gtools rmarkdown rstudioapi stringr usethis xfun]; }; + rcompanion = derive2 { name="rcompanion"; version="2.4.15"; sha256="1pb2ypc2i1dcvs4i099lzh9jz1ly2i33vw98vw7g1kxmgg5kjy9l"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; + rcompendium = derive2 { name="rcompendium"; version="1.0"; sha256="1j6hxf6hdvi90qhlzra0jkgyn7a3q4skj594b7lxg5mfkzs7zr2j"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; rconfig = derive2 { name="rconfig"; version="0.1.1"; sha256="0jcwfhbqh4sb8y5wd8l05xz0y7nn28dhfkb2r40jbp6ycrvw8mpp"; depends=[jsonlite yaml]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; @@ -15284,7 +15320,7 @@ in with self; { rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; rct3 = derive2 { name="rct3"; version="1.0.4"; sha256="1xm5kni2mnpzby8basmwbm1abg615i4mlf6fn9jr5il94q1bdgly"; depends=[]; }; rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; - rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-7"; sha256="0ww67wa3rjy0p2dgqr4h69sy9jb7ipmrmycx902491jya0gwsw2a"; depends=[ggplot2 vegan]; }; + rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-8"; sha256="0fmb8gigihf82gdz4yijfchwcw6s1jz91kfpjp0y6cs412lmq4ga"; depends=[ggplot2 vegan]; }; rdatacite = derive2 { name="rdatacite"; version="0.5.2"; sha256="07zbxr89fxx9nlp5w7n60rjm3prck08h0fjrq0pnpkbnnkx9cv9a"; depends=[crul jsonlite tibble]; }; rdbnomics = derive2 { name="rdbnomics"; version="0.6.4"; sha256="1h32wxjykz9y3k48rx31cvy485gsx8ix3194r2zgxlwdza3rl3lb"; depends=[curl data_table jsonlite]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; @@ -15311,14 +15347,13 @@ in with self; { rdrobust = derive2 { name="rdrobust"; version="1.0.8"; sha256="04z7a5499cc8q61wi2zc370l1r6ymipfd8zk7k93692c6lx3yygz"; depends=[ggplot2 MASS]; }; rdrop2 = derive2 { name="rdrop2"; version="0.8.2.1"; sha256="02rhcq1vn349ddjkqamxb0wjb3z3m4wzkvin1mprcz4fzrjxgbdr"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; }; rdryad = derive2 { name="rdryad"; version="1.0.0"; sha256="00f1qwsbwg5jggm5b83nhk1lxyw272rv2kg77bcwqvlf3074c3mz"; depends=[crul curl hoardr jsonlite mime tibble zip]; }; - rdtLite = derive2 { name="rdtLite"; version="1.3"; sha256="1njn6x2k03qxmb96d5sl7jz0xq5wabbixn9xy55ypw8g1k0cgmd1"; depends=[curl digest gtools jsonlite knitr provSummarizeR provViz rlang rmarkdown sessioninfo stringi XML]; }; rdwd = derive2 { name="rdwd"; version="1.5.0"; sha256="1x63zarcyc1rapg46h0vlym3v2kbd6ql2vza9jqly371p5g8l1ci"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="0.1.0"; sha256="1y4dnm2bb0w6pim4h79mv2km88s78vhsn5fhs7z45m0564hgk0x2"; depends=[raster rgrass7]; }; - re2 = derive2 { name="re2"; version="0.1.1"; sha256="0hjdm96qgbrb6lvgyadl30af93zvvni0rwqhialj8swp341qlvw2"; depends=[Rcpp]; }; + re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; reReg = derive2 { name="reReg"; version="1.4.2"; sha256="1w0h1dsy3hl66fghjcbgc4nh9k1dkga4d53qb5iyd35a5pwpv41v"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; reactR = derive2 { name="reactR"; version="0.4.4"; sha256="15c0ij3xglsdavkpzgnkbyl5yb39jrn6zhlrdjiwp1m9cnrqzf2w"; depends=[htmltools]; }; reactable = derive2 { name="reactable"; version="0.2.3"; sha256="17wl75cblm0rgq3chl96vj7wmbcmszss1zjppfccz1hcimfmlrpx"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; - reactablefmtr = derive2 { name="reactablefmtr"; version="1.0.0"; sha256="0c058ar826zfw7g9vdlgfc9sra3sxp1n6m1ijfgrfm04whk2sz50"; depends=[dplyr htmltools htmlwidgets reactable shiny stringr]; }; + reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; reactlog = derive2 { name="reactlog"; version="1.1.0"; sha256="0vngy7fixiighhaa0db8xfr6962jmrfn3675qrn3hj7rfh7siagz"; depends=[jsonlite]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; read_gb = derive2 { name="read.gb"; version="2.2"; sha256="1ym285y6ii71lz3c68imvcdpw24jdxbdxzq9ia533dy5himclrg7"; depends=[rentrez]; }; @@ -15350,7 +15385,7 @@ in with self; { readtextgrid = derive2 { name="readtextgrid"; version="0.1.1"; sha256="03qrbmlpbjwx4ia0ydv6m9lwzalsas9pdhds82mg5f8ir0cd0qi6"; depends=[magrittr plyr purrr readr stringr tibble]; }; readthat = derive2 { name="readthat"; version="0.0.1"; sha256="04vnpvfa8in3gxi6nv3si59hr8hj17wq3a5n8rnpiaczg46qr1dr"; depends=[curl Rcpp]; }; readwritesqlite = derive2 { name="readwritesqlite"; version="0.1.2"; sha256="1nnakxj4jsh8wcwzciksa2s1pxjwa407lzmjy4fk82f68ir9jh51"; depends=[chk DBI hms lifecycle RSQLite tibble]; }; - readxl = derive2 { name="readxl"; version="1.3.1"; sha256="15mambxr8c7k2ikdfsl1w3vxvm54dsnk0cl1qvks6iig7rql3d14"; depends=[cellranger progress Rcpp tibble]; }; + readxl = derive2 { name="readxl"; version="1.4.0"; sha256="1xwi4k5si48hwkgfc59icfmp9dzlvfri59k5fsgn96zp9713k4mb"; depends=[cellranger cpp11 progress tibble]; }; readxlsb = derive2 { name="readxlsb"; version="0.1.4"; sha256="1qnfijspx8zwsmr1i6qb7vgaxazmvshq5mcxn79y0r2spszq419i"; depends=[cellranger Rcpp xml2]; }; realtest = derive2 { name="realtest"; version="0.2.1"; sha256="0868ng2vg91c3wsx6c13k7cii2519k1algs8a6pgf4r01jvja5pz"; depends=[]; }; rearrr = derive2 { name="rearrr"; version="0.3.0"; sha256="0cha5klizm1qppvw512j86papnbc5g0k6yyq2bifw831dqb6k9pb"; depends=[checkmate dplyr lifecycle plyr purrr R6 rlang tibble]; }; @@ -15415,20 +15450,20 @@ in with self; { regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; }; - regfilter = derive2 { name="regfilter"; version="1.0.1"; sha256="19dp0219a789qjxc0flg14bwp297g3kcy5p65m9qsw72658pxw3z"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; + regfilter = derive2 { name="regfilter"; version="1.0.2"; sha256="0b0msgx2ffcbd8aijxknwb54ha38dqbvgzwsggf4v7mlpqga1qm0"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; reghelper = derive2 { name="reghelper"; version="1.1.0"; sha256="16mj3v9rn9krx4a8xnb2l01wnk17hgn0pkmkvqh4baby9a479hv7"; depends=[ggplot2 lme4 MASS nlme]; }; - regional = derive2 { name="regional"; version="0.3.0"; sha256="1x97jjpn08q0w3xw1r6k8dvildcl16zzwxwrwmbdhavqmcvf0lp8"; depends=[philentropy terra]; }; + regional = derive2 { name="regional"; version="0.3.3"; sha256="0gwm3lqmils8dpv0g0919caqifa90lv3vrjqcky33i7jd18c20g2"; depends=[philentropy terra]; }; regioncode = derive2 { name="regioncode"; version="0.1.1"; sha256="1h5qbpcfgl86g0cy5nz9vvwzqsp335lqhl4djil3k3mab38k778d"; depends=[dplyr knitr pinyin textshaping]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; registr = derive2 { name="registr"; version="1.0.0"; sha256="1ysj2ab69w6g71d1kpcwyq0py71w6h7lfhk4nzgn2dhh6k8whwbn"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp RcppArmadillo tidyr]; }; registry = derive2 { name="registry"; version="0.5-1"; sha256="1k3j6dx350awamr0dwwgkhfs46vsnj4nf08iw5byq0x7n3nkdsnz"; depends=[]; }; reglogit = derive2 { name="reglogit"; version="1.2-6"; sha256="1nnn8n5sqhbd3nzmwnpmcsmaxxxaqwbna7xm7q9vk4cqz9cm9b9s"; depends=[boot Matrix mvtnorm]; }; regmed = derive2 { name="regmed"; version="2.0.4"; sha256="19cc0nx4463jny9cw5smb95crb3makspysfx06h82amhyqjyzw60"; depends=[glasso igraph knitr lavaan Rcpp RcppArmadillo]; }; - regmedint = derive2 { name="regmedint"; version="0.2.1"; sha256="0z6yq0r0mq028z09zayfmsyyjjcnh9cg75xwckcxk0xbgs1qk1yx"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; + regmedint = derive2 { name="regmedint"; version="1.0.0"; sha256="1rysxdci13r08y79fyd5h5idl2ip4i7b8v4x6n2rlc0vwi5wc61a"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; regnet = derive2 { name="regnet"; version="0.4.0"; sha256="0qb7sp464fyxn0bslkapjni3pzk7l6fdgabfbzja08flsr63r4mh"; depends=[glmnet Rcpp RcppArmadillo]; }; - rego = derive2 { name="rego"; version="1.3.4"; sha256="1dqirk3wk3xps612av54d1f0h3ddh1an9bnxqyb9vbbpml9fw18a"; depends=[Rcpp]; }; + rego = derive2 { name="rego"; version="1.3.5"; sha256="02zlllxral9ar4nwyfjijzkymkch8vlnv0pfjp8lns8dzd3h1rvn"; depends=[Rcpp]; }; regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; - regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; + regport = derive2 { name="regport"; version="0.2.0"; sha256="1qj4wf02ycvdb9gqgvfn19k2cqxy1mjdl9yy80vfm4m561ldpfr5"; depends=[broom_helpers data_table dplyr forestploter glue parameters R6 rlang survival]; }; regrap = derive2 { name="regrap"; version="1.0.1"; sha256="0yrxhlam7jmxwk1v53kllv6ja1m938symfvqp84xb278r3wb1wv7"; depends=[mvtnorm]; }; regress = derive2 { name="regress"; version="1.3-21"; sha256="0mkf1dyg0r09ifdvmc3g6b0q0h819j0kfh1cb33r1vsr8yfjvgbz"; depends=[]; }; regressoR = derive2 { name="regressoR"; version="2.0.1"; sha256="0h5f085vpmvjzrr3wiq7gvj0cma41szikmp8iaczhc04cdj6k18b"; depends=[DT e1071 echarts4r gbm glmnet golem htmltools kknn neuralnet pls randomForest rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; @@ -15437,7 +15472,7 @@ in with self; { regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtomean = derive2 { name="regtomean"; version="1.0"; sha256="1w5i75iwwc2w2nzw9yap86njhq9jz0pc9cn39ivxdam4a9693jjz"; depends=[effsize formattable mefa plotrix plyr sjlabelled sjmisc sjPlot]; }; - regtools = derive2 { name="regtools"; version="1.1.0"; sha256="1kia4h4bwjjfq7jm57ihdgspbqfn683ssbzngp5r069ki931h3nb"; depends=[dummies FNN mvtnorm sandwich]; }; + regtools = derive2 { name="regtools"; version="1.7.0"; sha256="00g50dcfy93rgy9a2l24rsjgwk1575gxhpg9dy5r9928nwwd6lx9"; depends=[car data_table FNN glmnet gtools MASS mvtnorm polyreg R_utils rje sandwich text2vec]; }; regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; }; rehh = derive2 { name="rehh"; version="3.2.2"; sha256="1kgabmg0vq8psdhkfcpdv3iy8gj5hmqzhb8bs8rld49nhnnbqs2x"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; @@ -15448,14 +15483,13 @@ in with self; { relSim = derive2 { name="relSim"; version="0.3-1"; sha256="1d6yihapfyjlfw87l370wyfyby7ivvykx04qljffdv3hi801gn7f"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-6"; sha256="1v2zvakzrnc89dshhpkrikfwa7l786sk5vnz4khil5f53biahm4r"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; - relations = derive2 { name="relations"; version="0.6-11"; sha256="1nsl042djnd7l61ckv3pwndqwxjcwvnvpni6d52dxc982gm8sims"; depends=[cluster sets slam]; }; + relations = derive2 { name="relations"; version="0.6-12"; sha256="18qqlw04crg3f17hzcwyl2sy4y1ffd4r4vf758nzv0bhhivb99aq"; depends=[cluster sets slam]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; reldist = derive2 { name="reldist"; version="1.7-0"; sha256="0i04d6w3r6fzm4bykz6lnnh6dngmd61v5wlpli70r3fzdzhi7fji"; depends=[densEstBayes Hmisc mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; relevance = derive2 { name="relevance"; version="1.3"; sha256="185fb5vjq1l6q1yz4qyvm2qli1xpp3wc4d1s17y28daljmdijlw8"; depends=[]; }; relevent = derive2 { name="relevent"; version="1.1"; sha256="10wy6qbg91bq8cs5fas50nnfw80rpsgr8bqpfbsxcmsh43ilpgg9"; depends=[coda sna trust]; }; relgam = derive2 { name="relgam"; version="1.0"; sha256="0bfsk2pc3vdk8wgdfpz80x0f9p0z37sq114swqn6z11p298hwf2x"; depends=[foreach glmnet]; }; - reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; }; reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.0"; sha256="0qgvyjc512gwr0rbgxkkf9ipvxfl9y07215f1pdk15xhzkk94m53"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; relliptical = derive2 { name="relliptical"; version="1.1.0"; sha256="0qarn0gyr1zkr1y9hdy0xmlrx12cp9sfn1fglgprfbymbjr36ncc"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo Rdpack Ryacas0]; }; @@ -15467,6 +15501,7 @@ in with self; { rematch2 = derive2 { name="rematch2"; version="2.1.2"; sha256="1fzpz8vhghw8ygwg6rsvfy3783pqk7ch029i5851lwypkplvz77y"; depends=[tibble]; }; remedy = derive2 { name="remedy"; version="0.1.0"; sha256="1lsa5az9jwy4ngjmfzcb7qj4wm8phsgajlnp5kwa4nav0g1dhb4s"; depends=[knitr rematch2 rstudioapi]; }; remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; + remiod = derive2 { name="remiod"; version="1.0.0"; sha256="05xqc52rxjr1smfh26j6dwnc5i4n4al93jrq9wy85jdxkjx2y3h5"; depends=[coda data_table doFuture foreach future ggplot2 JointAI mathjaxr Matrix mcmcse ordinal progressr reshape2 rjags survival]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; }; remotes = derive2 { name="remotes"; version="2.4.2"; sha256="05m5dgv0nba5vhjbdkd8z5lbhpfxgkw31j58am7vz1d44igqgvzj"; depends=[]; }; @@ -15488,12 +15523,12 @@ in with self; { repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repmod = derive2 { name="repmod"; version="0.1.7"; sha256="1rpmvxfw2m3bisi5g90sdfm8wmwg2gv9rzblq9kl70kvrs8pj1qs"; depends=[boot flextable lme4 lmerTest officer xtable]; }; repo = derive2 { name="repo"; version="2.1.5"; sha256="13gdka37kbs4mp16pf65bh28f0dkyalrcrdik6lc67jw8r9h94f9"; depends=[digest]; }; - repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.0"; sha256="0kdjg0hmhw4h5gwmzxr44xrr1lkij3p75729mwbqxqfdgn784ajx"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; }; + repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.1"; sha256="1qxcrn0npn5a257bxc06b06icckm2fcrwapv3xazkpc7dw6c1fqn"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; report = derive2 { name="report"; version="0.5.1"; sha256="1x293zjg4zfkcrgl6dsa6jn0igpxr12ic7jlb4ps79221ygga873"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; reportROC = derive2 { name="reportROC"; version="3.5"; sha256="1f3vdxz45bhks1pm3b41pmh8g8vr2czfr1pn4ddy4kgw5h1x3n8n"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; - reporter = derive2 { name="reporter"; version="1.2.9"; sha256="0aiv4wqv633jiazyf157dwi1bp6qgv6vnsnsral02cp9sm53cpq9"; depends=[crayon fmtr jpeg stringi]; }; + reporter = derive2 { name="reporter"; version="1.3.1"; sha256="1cq36gw14jhnaxgnbwz311rhb8da1aj8q7iajyk2rzsivjwxvnyk"; depends=[crayon fmtr jpeg stringi withr zip]; }; reportfactory = derive2 { name="reportfactory"; version="0.4.0"; sha256="0mkk9gyd3l6m33mkc6w3fmgrzc6na03kwxxwgn0zb83bjpmyyl1z"; depends=[callr fs knitr rmarkdown rprojroot rstudioapi yaml]; }; reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; @@ -15521,11 +15556,11 @@ in with self; { resevol = derive2 { name="resevol"; version="0.2.0.9"; sha256="01w95ylmgyj75shljkmkmh0pb1gl7ys413fay4qbzll1z01rng1w"; depends=[]; }; reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; - resourcer = derive2 { name="resourcer"; version="1.1.1"; sha256="0zjr12fxjlw9zwa5n3l7r2m6vrksvczdzyhq3aj3hzqbm148z1cq"; depends=[httr R6]; }; - respR = derive2 { name="respR"; version="2.0.0"; sha256="19pyhplwmghm9qcz6b99nvsr6g3wnilr03ssf1cakh0q8km3x4as"; depends=[assertthat broom cowplot data_table dplyr ggplot2 glue gridExtra lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; + resourcer = derive2 { name="resourcer"; version="1.2.0"; sha256="1ybmhs9f8qh6vmlvc4lnyklqjd23qhgflxaak1j17k0jf1a317n9"; depends=[httr R6]; }; + respR = derive2 { name="respR"; version="2.0.2"; sha256="0670hy7gg8bbjkjqcvchm83jr57725r8szix66mqggwx0xwjcxj0"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; - restatapi = derive2 { name="restatapi"; version="0.12.8"; sha256="10x6zik6szvkmjzasv6dpa363jwim1jim9z27jc3x29kd3nw79hl"; depends=[data_table rjson xml2]; }; + restatapi = derive2 { name="restatapi"; version="0.13.1"; sha256="1v19laafks48cfjccr4pk429xhp46asxndg3idk3zr5qm0hd91hv"; depends=[data_table rjson xml2]; }; restaurant = derive2 { name="restaurant"; version="0.1.0"; sha256="1dr9nw5xkll1wnra2xi8dg2yiv85nibdg1i9lsn44v7cgr9vb32j"; depends=[]; }; restfulr = derive2 { name="restfulr"; version="0.0.13"; sha256="1dk45mzrr6ka92yjz7hfhkj12kpx1wg4szv1h1mg80mgga4ganbv"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; @@ -15553,7 +15588,7 @@ in with self; { reverseR = derive2 { name="reverseR"; version="0.1"; sha256="0pzk97q1zs5g1v4ngqd6bkwwxcp89j890nycpc99ipycbgm2r9yw"; depends=[DT knitr markdown shiny]; }; revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; }; revpref = derive2 { name="revpref"; version="0.1.0"; sha256="07gbwrwmnq5b48fgdb7m2j8ygz60qm5m23ai7g7yidwk2fayq7ym"; depends=[gtools]; }; - revss = derive2 { name="revss"; version="1.0.3"; sha256="08gikvz2cqr9na51r3fhi7ncyrsh8hf2wxi185zjjg7vbdiww6h8"; depends=[]; }; + revss = derive2 { name="revss"; version="1.0.4"; sha256="0z08kpvc6qi6qklj2dzidm8c9r8v9k28g583smkxiq8ldh405bzm"; depends=[]; }; revtools = derive2 { name="revtools"; version="0.4.1"; sha256="0nms7rwpdzf3xq2incraxppha4c830gcygpbnhwjs92c836hh2f0"; depends=[ade4 modeltools ngram plotly shiny shinydashboard slam SnowballC stringdist tm topicmodels viridisLite]; }; revulyticsR = derive2 { name="revulyticsR"; version="0.0.3"; sha256="0dz9c26qwasgpp6a5fqh1rgq0hp9dhsrcm1h2hbp0cisri8iwsjf"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; @@ -15561,7 +15596,7 @@ in with self; { rex = derive2 { name="rex"; version="1.2.1"; sha256="1mmzlc3j7xa0rbjxa369f4sr0iw3gq58g8fmjjxbsjvfq14ychmg"; depends=[lazyeval]; }; rexpokit = derive2 { name="rexpokit"; version="0.26.6.7"; sha256="13zrr5qj96vh50mknlc2pl7gq1kx5ahwk3n9ij4xr67734x3mx1r"; depends=[Rcpp]; }; rextendr = derive2 { name="rextendr"; version="0.2.0"; sha256="0d5nkdphdlyyd9qi3dam16ag89b0h6n38q91pkp71n9xhb4ffrx8"; depends=[brio callr cli desc dplyr glue pkgbuild pkgload purrr rlang rprojroot stringi tibble withr]; }; - rfPermute = derive2 { name="rfPermute"; version="2.5"; sha256="0h7p11cfgdl050qldpns8766y8yqp6wvpdpd15xb07z4cgzbymf7"; depends=[abind dplyr ggplot2 gridExtra magrittr plyr randomForest rlang scales swfscMisc tibble tidyr]; }; + rfPermute = derive2 { name="rfPermute"; version="2.5.1"; sha256="156vaxkjs5959bh4fh65zqfy8p7ag66abizx6n3wj6q078048jvj"; depends=[abind dplyr ggplot2 gridExtra magrittr randomForest rlang scales swfscMisc tibble tidyr]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-5"; sha256="1anwvmxn3xrc1aqxl75rzlk4wby8l54rmkp0bgi8dgbz2l223xr0"; depends=[cluster randomForest]; }; rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.1"; sha256="16ivcnnzrgqzfzcbdyi10rwn8r8r0yyxyfpx25lxafb6pj3kxpvf"; depends=[binaryLogic dplyr ggplot2 ggpubr magrittr prob randomForest titanic]; }; rfacebookstat = derive2 { name="rfacebookstat"; version="2.5.0"; sha256="02l6iwb8nb4pc24ghczkjxh6icbr1s951hrpj021k5z624rmz9d8"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; @@ -15580,12 +15615,13 @@ in with self; { rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; rfordummies = derive2 { name="rfordummies"; version="0.1.6"; sha256="01xv6ds3h8gvi1wi5hgy3r1dhi0767mcgsnshvhva3bnvf1a8398"; depends=[]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; + rfvimptest = derive2 { name="rfvimptest"; version="0.1.1"; sha256="15r98l3js5y6sjwr47hgp3sl0844a552l8r99kz6dvzk81ppya2d"; depends=[party permimp ranger]; }; rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.7.0"; sha256="03av5xzf13jnrmwg1jgdixvqb991v1z6kw9wvjihhvc842mbd44b"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble wellknown whisker xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.5-28"; sha256="18k1w8cb77h4mw1m5b21r0fng40arb1md24fyriv83ccz8n46m3z"; depends=[sp]; }; + rgbif = derive2 { name="rgbif"; version="3.7.1"; sha256="1yd0vwcg2jci9iqkddq16xshm1a4ay9rcf3bkkrasly7ny3larz7"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble wellknown whisker xml2]; }; + rgdal = derive2 { name="rgdal"; version="1.5-29"; sha256="0b8lvllqc12i4ilicsy5c6fzbjakl331h9f2mp2n3n9hw8f0m729"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; - rgee = derive2 { name="rgee"; version="1.1.2"; sha256="0r0mr2gqj75dkga552xfikiiy76h14js8qh29swin3f23xr9dwz0"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; + rgee = derive2 { name="rgee"; version="1.1.3"; sha256="17y4n4vk4lzibxwcp94fhcnp21hllas1ab8bjdidk4hq5qxql96v"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; rgenoud = derive2 { name="rgenoud"; version="5.8-3.0"; sha256="0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"; depends=[]; }; @@ -15616,6 +15652,7 @@ in with self; { rhcoclust = derive2 { name="rhcoclust"; version="1.1.0"; sha256="1d9a29h4h6z04vjjdfi0sx7wpl8iw5zg2ymjpjlppzbbzzq2l8n2"; depends=[fields igraph]; }; rheroicons = derive2 { name="rheroicons"; version="0.3.2"; sha256="16rvsqlwp9j2v3zaqp37pwdjdj9ail21i4vicxq07c11x7r567gx"; depends=[htmltools shiny stringr]; }; rhierbaps = derive2 { name="rhierbaps"; version="1.1.3"; sha256="0i4sr2wwzzl8vki5zihnd8v4ia2kji09cmf4ld07b6k099g5xprr"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; + rhino = derive2 { name="rhino"; version="0.6.4"; sha256="1ar50lrkmf93krxl7a9rcyn42bbi5y8k595d8b88p0m84ccb9dc0"; depends=[box cli fs glue lintr logger purrr renv sass shiny styler testthat withr yaml]; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; @@ -15655,9 +15692,9 @@ in with self; { riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="2021.10.10"; sha256="1fhkn9qz7h95qzb2fcai0smy4vsvj7f7538g5jk0pa7wqr8z6wc4"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; + riskRegression = derive2 { name="riskRegression"; version="2022.03.22"; sha256="0ix0h91a9zsw3cl4pg14mmkzq71f2g9r4wakpixy0fp7bfj6c6jf"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; - riskclustr = derive2 { name="riskclustr"; version="0.3"; sha256="13fl00g0hzcl4vqvl8zl4m5bpp14948yvd4i4dbdrg1h8ym30ir5"; depends=[aod Matrix mlogit stringr]; }; + riskclustr = derive2 { name="riskclustr"; version="0.4.0"; sha256="1b5pjnfz6n716fn1va4kl4y3jzf48sm0i2xaxw0225vmmvq06d9g"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.1.2"; sha256="004a888y0srvaazq90l3v1q11qfl927h87420fs03zklkq27bvr1"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; riskyr = derive2 { name="riskyr"; version="0.3.0"; sha256="07fm3gmjydby3mxivwr3rbg6q7fbjlnggfk26sfiqb2wl08dmx6j"; depends=[]; }; @@ -15678,7 +15715,7 @@ in with self; { rjpdmp = derive2 { name="rjpdmp"; version="2.0.0"; sha256="0r0r58zrwab4zxhgbfhh4qk6vbbza00m8h73mz70f5kqp786i9wy"; depends=[data_table Rcpp RcppArmadillo]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; - rjstat = derive2 { name="rjstat"; version="0.4.1"; sha256="0kqnl4wizmain70ady982aldhscf24870shvf3sviknplshhgk8j"; depends=[checkmate jsonlite]; }; + rjstat = derive2 { name="rjstat"; version="0.4.2"; sha256="0j79svby5zzg63pks5667jvky0m5csyyrb863lpba4aprd80pig0"; depends=[checkmate jsonlite]; }; rjwsacruncher = derive2 { name="rjwsacruncher"; version="0.1.2"; sha256="0kqr2pd3smqxx0h35k8mf7wamdqpqrncjhmvbiap8bwbkhm4sqhb"; depends=[XML]; }; rkafka = derive2 { name="rkafka"; version="1.3"; sha256="1h6f7wgz8qgh76p9w9vzcvcaa1piwnrx331gm1wxa1m31xs466jd"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; @@ -15687,13 +15724,14 @@ in with self; { rkt = derive2 { name="rkt"; version="1.6"; sha256="1sqij8ivjrrb1lii3jwvgsx9zqv47ib1lhrh6zvvh5a67didwrih"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; rlang = derive2 { name="rlang"; version="1.0.2"; sha256="1k6pzl2x80pycpllvd8n1k62h5cfdwc0hsdwvbicrcxhdwz7rs4d"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.5.2"; sha256="0ib7nd9fbqyw0bs0p0lh67ml1zfl70h45iyasqv2wvwrmsrh4hy9"; depends=[BH data_table Rcpp]; }; + rlas = derive2 { name="rlas"; version="1.5.3"; sha256="02wnlncfgk9chm63q07csw38lzxir7hlwvlprnhkmdgmyas8yh1g"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.4.1"; sha256="1znx2749m9af3jq3avxf50amkhzvimr5ybwmk4g9vhwka86c3vqk"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rle = derive2 { name="rle"; version="0.9.2"; sha256="0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40"; depends=[]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-5"; sha256="09mniai7v8gapr6hd3zm8sm3vi1zcyhgym389904ykb2yx7l68s7"; depends=[]; }; + rlemon = derive2 { name="rlemon"; version="0.1.0"; sha256="15m3bijs80jn5w6jdaxivj8ix7d5zfwshxlxip9walkzqp963jzm"; depends=[Rcpp]; }; rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; rlfsm = derive2 { name="rlfsm"; version="1.1.1"; sha256="0pv6136b1b5q46q75msjc6bzzx1wcq23313kv1b3bvpwpiyw52gn"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; rliger = derive2 { name="rliger"; version="1.0.0"; sha256="1gqdwmy073sg48id015q02bx20xsqyc6jpbw4nym3c09cqz681dr"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress riverplot rlang Rtsne uwot]; }; @@ -15711,7 +15749,7 @@ in with self; { rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.12"; sha256="1476b2wl60p3bq4llf6jzpj7c02fp6v04l2865v3qj32m3nskay3"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.13"; sha256="0i07p3dxxv2s2a4xmyhc3qxmwg86vakniq5jjjclmcq2sahvw5vj"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.4.5"; sha256="018d3rfh2688yqkarcmxqqfbmmzcmj6q3hwinns4kj6xnnlmv1xr"; depends=[psych RColorBrewer]; }; @@ -15740,21 +15778,21 @@ in with self; { rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.2.1-14"; sha256="1bl3wap6qjdryyrxqv85qnb9dv7xkx56c5y8qsaj2979748gwjjj"; depends=[Rcpp]; }; + rmumps = derive2 { name="rmumps"; version="5.2.1-15"; sha256="0krclpdxls4wcymfamds176grlf2mbhap5dp5xcg4i8lfvh5lbkn"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.9"; sha256="0g1kf2bf8f34r9qw5x4810kxg6lkml5nh2lnmdmwnkrrb10cqs1s"; depends=[]; }; rmweather = derive2 { name="rmweather"; version="0.1.51"; sha256="0qd49lr12hc39dwg348b021aqxw57pfcb9xxhp51fvnw6gw6bgqd"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; - rnassqs = derive2 { name="rnassqs"; version="0.5.0"; sha256="1mbkv32zidax9i6km93bbi3m7xpnsy805cz4ikdrid84qg94an09"; depends=[httr jsonlite]; }; + rnassqs = derive2 { name="rnassqs"; version="0.6.1"; sha256="00daka4pgvmipqq3151jj35fsicpfc06mnim8mm5jx5cyqcvilf7"; depends=[httr jsonlite]; }; rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; rnbp = derive2 { name="rnbp"; version="0.2.1"; sha256="0vphfxb262jryvvs48l21q3vxqicj51az0li38axg1mslshw0y4g"; depends=[curl httr jsonlite]; }; - rncl = derive2 { name="rncl"; version="0.8.4"; sha256="0ss9jqrvv7bhvl5j74cjrp8r866d9dlavrbbfscwz3mhkgfx06bb"; depends=[progress Rcpp]; }; + rncl = derive2 { name="rncl"; version="0.8.6"; sha256="1ywgwqn82z8h6zpcxxq4hgngdpfa6dj0lr7bfq4cwfml9z075jgw"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; - rnmamod = derive2 { name="rnmamod"; version="0.1.0"; sha256="1ayl5cry7lxdf1zscdrxdf50y78scr4qdkghdki6srkx2r645wx0"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; + rnmamod = derive2 { name="rnmamod"; version="0.2.0"; sha256="0dncj3dldb4d1j5m1dypk9lyg5jb2m2fi1k7p9sl52a6bfadcbb4"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.5.0"; sha256="109h3zfpyl3jir27vq1v6z5b3ffjszxvdygq6l787apl5n3j8par"; depends=[shiny sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.8"; sha256="12mrvvq93535pk9g52h0sl5wdlw0wpqdchghi24fjdr62r44p5sp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; rnpn = derive2 { name="rnpn"; version="1.2.4"; sha256="0lq9c5in0pf3km6zvfnn71wbh34lk3hgav0b9waspmzsgki8fvl1"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; @@ -15767,14 +15805,13 @@ in with self; { robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; - robcp = derive2 { name="robcp"; version="0.3.3"; sha256="0mdg61k76dz5a7wggdlq8cfym8bvzl5ybm7hhc8kvyllmmvvb1y9"; depends=[Rcpp]; }; + robcp = derive2 { name="robcp"; version="0.3.5"; sha256="06jr9abvy238ajymwwja5z8x6sjrjxd660w07sallq3wxly4k9mi"; depends=[Rcpp]; }; roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; - robin = derive2 { name="robin"; version="1.1.0"; sha256="11z09g4nzswdqhx5w0vmx1gmxkh0k451hr50avcny6q1r7hykjk6"; depends=[DescTools fdatest ggplot2 gprege gridExtra igraph networkD3 qpdf]; }; robis = derive2 { name="robis"; version="2.8.2"; sha256="0nlvp9w9j2kyv0rrsjkzr3sj77ciz8ink3yr615sjc69iqic34aw"; depends=[curl data_table dplyr ggplot2 httpcache httr jsonlite leaflet mapedit purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; - robmed = derive2 { name="robmed"; version="0.10.0"; sha256="020l67zrijcmbfp4nd0hbip1sb5yxhjmjhjk9b5vbk4mz3iqvf4m"; depends=[boot ggplot2 quantreg robustbase sn]; }; + robmed = derive2 { name="robmed"; version="0.10.1"; sha256="0cs7wy19iqn0d5rfjrv3wpjh46gvvpad4ckmz4hz8g0knhq96zdj"; depends=[boot ggplot2 quantreg robustbase sn]; }; robmixglm = derive2 { name="robmixglm"; version="1.2-2"; sha256="117dhnnj55hihpzim45dw3cjm4ma6w21d8j77fybyri2bmpvlypa"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; robnptests = derive2 { name="robnptests"; version="1.0.0"; sha256="0bk3ngwav3r00lf2lb8hq2h578mkfc48gcm845lyxyn7i87vglgg"; depends=[checkmate gtools Rdpack robustbase statmod]; }; robomit = derive2 { name="robomit"; version="1.0.6"; sha256="1yma6m4bxy3hikc9kx7mslqgq1fpi4my7qij9pz77ag836r9hcxm"; depends=[broom dplyr ggplot2 plm tibble tidyr]; }; @@ -15794,12 +15831,12 @@ in with self; { robustHD = derive2 { name="robustHD"; version="0.7.2"; sha256="19nq86wy08gpb07snwadymxwfdg4qkp2a8bhnpymwfqd0lzjyq43"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; }; robustX = derive2 { name="robustX"; version="1.2-5"; sha256="1l8ap69aljr3d28512d15hf53bxzfdk6q4ab59z63nr053rfxa4f"; depends=[robustbase]; }; robustarima = derive2 { name="robustarima"; version="0.2.6"; sha256="137x9w3fq523bw2wix7bwc255mq7kvqa047chcnb2prihn9d6as7"; depends=[splusTimeDate splusTimeSeries]; }; - robustbase = derive2 { name="robustbase"; version="0.93-9"; sha256="0i9wf4aq8zpn2np6z2rjja21ks9n740dgkiv0qfwdzk3ah3vapyp"; depends=[DEoptimR]; }; + robustbase = derive2 { name="robustbase"; version="0.95-0"; sha256="094pxwp78bmqyn6vncyzrazqxnn8abqsbzhlcq44avfz8qffmyjw"; depends=[DEoptimR]; }; robustcov = derive2 { name="robustcov"; version="0.1"; sha256="1bgvf9h727aqfb11q976y2ybp3mpghkyd29waypyfp95csp3cf26"; depends=[caret glasso Rcpp RcppArmadillo]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; - robustlmm = derive2 { name="robustlmm"; version="2.5-0"; sha256="0y15w5vd16nfvs3mmvp496hhvgajfgnpgz6vl3vp5yhs1q2xkynk"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="2.5-1"; sha256="1zb2lxnc46ki1ib8q2p8i8xlzzqg4sm3h067rwq2mm6r9sx0qsc7"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-11"; sha256="08c6dyzki68hzl006s12bkjiirlw2n2isirjh8b79sd6zjrjlh72"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -15882,7 +15919,7 @@ in with self; { rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; }; rplos = derive2 { name="rplos"; version="1.0.0"; sha256="0gl336cqy96npkkh9g6gsaqyyk1sn93xbybv09lm8xih36qlr0b0"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; }; - rplotengine = derive2 { name="rplotengine"; version="1.0-7"; sha256="1bbciq84l0h6g4qajlcqg3v66g2rspflv6k7x5h5qzwlcb4p4dps"; depends=[xtable]; }; + rplotengine = derive2 { name="rplotengine"; version="1.0-8"; sha256="0ihpfd4fz2r1vxr2priziywc7lm8bxwgg504b66hvr179m5w880y"; depends=[xtable]; }; rpls = derive2 { name="rpls"; version="0.6.0"; sha256="0r3y63pi4d7hfzs53d9w23ymmk86gvm85v0dx7n1gicha5nn1mk8"; depends=[pcaPP robustbase]; }; rplum = derive2 { name="rplum"; version="0.2.2"; sha256="119gs1g45gl985nrvps438z4zhzwqqv6yvqzddvpz8zhsbfzgpa7"; depends=[coda rbacon Rcpp]; }; rpmodel = derive2 { name="rpmodel"; version="1.2.0"; sha256="131kzag51r1fpa63xzj77b9hh4b1723lc424ch8dhbrcdrnjh730"; depends=[]; }; @@ -15896,18 +15933,19 @@ in with self; { rprev = derive2 { name="rprev"; version="1.0.5"; sha256="0494z0049rxahs4ndjlclzfc65k304a1m01cdlhjg4rz1gc1vrr8"; depends=[data_table dplyr ggplot2 lazyeval lubridate magrittr survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.2"; sha256="1h54vclc800pir3vxqcq4cmmxy9fcar1fydqmba2dzpj8dvlad7v"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; - rprojroot = derive2 { name="rprojroot"; version="2.0.2"; sha256="07wy07yhms8zln9qb0iwx69dq08h4lrdi8kavjcplfxcskq638az"; depends=[]; }; + rprojroot = derive2 { name="rprojroot"; version="2.0.3"; sha256="15zq606s544wmbvk5dw13xq0sspr9dsxyxlvzvn0r48f8x3l4q2h"; depends=[]; }; rprojtree = derive2 { name="rprojtree"; version="1.0.0"; sha256="0414srpgx2jgf8jaznpin131hiih17avx45vggf812b3xcicm11b"; depends=[dplyr jsonlite magrittr rjson]; }; rpsftm = derive2 { name="rpsftm"; version="1.2.7"; sha256="0ncf9ci39pd7p048cgvhl6phhk975xwyjm4aqs1b4hjy1nml4iz2"; depends=[ggplot2 survival]; }; rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; rpubs = derive2 { name="rpubs"; version="0.2.2"; sha256="18cnzhcvm7gx4k01ysqay53smrf8xqlbaszq41mny5c7qqh1fvpz"; depends=[rvest xml2]; }; rpymat = derive2 { name="rpymat"; version="0.1.2"; sha256="1wq60xspjfzmpax79x6sd3bwa3m63mfklpdv7x797p1d0v636lhy"; depends=[fastmap glue IRkernel jsonlite rappdirs reticulate rstudioapi]; }; - rqPen = derive2 { name="rqPen"; version="2.2.2"; sha256="077kdvfdyp5h8630k8jigbz8mfyby8vkjiqxpqv0wfi6cqcjlaf2"; depends=[quantreg regpro]; }; + rqPen = derive2 { name="rqPen"; version="2.3"; sha256="0qp4c420jcph4hxy8hq890hl524g82gkbgchjxh118jfjqkz7yli"; depends=[quantreg]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; + rrMixture = derive2 { name="rrMixture"; version="0.1-1"; sha256="0k7rc1d1nx4w1hcv8rx6kpjh846mblx6787z94ki1vv1dwflb6zr"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; rrapply = derive2 { name="rrapply"; version="1.2.4"; sha256="06kdkclvcxyw5hsy18azz7345140079r134dksyb6wv94aiplzkm"; depends=[]; }; rrat = derive2 { name="rrat"; version="1.0.0"; sha256="1j1jd32pgggn5cqv66l63sw5p4hblgpznf33wd0zdbfapwy8rx4r"; depends=[quantreg]; }; rrcov = derive2 { name="rrcov"; version="1.6-2"; sha256="18x8y2b9n2plpn4086nkjk9c27p7gb78kbrv5pj9r8fb0idl5rn5"; depends=[lattice mvtnorm pcaPP robustbase]; }; @@ -15916,7 +15954,6 @@ in with self; { rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; rrd = derive2 { name="rrd"; version="0.2.4"; sha256="05njzrgd5p39zmyqxgnb2x9q3c7669fsv76vspdv9i9n804z5d5d"; depends=[assertthat tibble]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3.1"; sha256="1qnjriv1xq4gjjhzz8jxrbk88mw5xddl2l2i4bmfhnxhi51d2rk3"; depends=[ggplot2 knitr MASS Rcpp registry]; }; - rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; rredlist = derive2 { name="rredlist"; version="0.7.0"; sha256="1w77cnfrybmqnadsmfkpjv5m49kkr7yc6kcqq165lmj3bijnprnj"; depends=[crul jsonlite]; }; rrefine = derive2 { name="rrefine"; version="2.0.0"; sha256="1plv6ykhcpp8d111gkkh8zx9zjrkxqpvg6vcbcy2234yd6wd0wky"; depends=[httr jsonlite readr]; }; rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; }; @@ -15925,10 +15962,10 @@ in with self; { rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.2"; sha256="1d9dwgw8la8wwq9cdnl7qibkzbdl4cj0qvf05x7w13ip973dwpaq"; depends=[eha mc2d msm tkrplot]; }; rroad = derive2 { name="rroad"; version="0.0.5"; sha256="09q5r9wq3vm5wy5aigx9wffv7m0njlp3sma1djm6cp7hhwgss0nj"; depends=[]; }; rromeo = derive2 { name="rromeo"; version="0.1.1"; sha256="1jjk5b41qg22a0zpjha2p2mfcb5q00gicqlxhkahjbj49q0c3mn9"; depends=[httr xml2]; }; - rrpack = derive2 { name="rrpack"; version="0.1-11"; sha256="1bchha6dbkgc1raiks22cjmqzsias0c0frz8il67napkgmwlqk6d"; depends=[ggplot2 glmnet lassoshooting MASS Rcpp RcppArmadillo]; }; + rrpack = derive2 { name="rrpack"; version="0.1-12"; sha256="0wh5habgsw0nk8igmswvs5j8bqr6bpj6yvpvyfi16sqvqyyp59a6"; depends=[ggplot2 glmnet MASS Rcpp RcppArmadillo]; }; rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; rrscale = derive2 { name="rrscale"; version="1.0"; sha256="1s8ziwh95410i9p176xbsk9k6ccyihi2mqa5gaigcqrkb3dzyy08"; depends=[abind DEoptim nloptr]; }; - rrtable = derive2 { name="rrtable"; version="0.2.1"; sha256="1hblrxn7vixcp32j3cij0xrkzvk31agi9dqgxrimcrzs7gjcd1j5"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; + rrtable = derive2 { name="rrtable"; version="0.3.0"; sha256="1y1hfscnw466azxk1c2kpa486xn8561zl5inv7yk5q8926ls2zc3"; depends=[devEMF editData flextable ggplot2 ggpubr magrittr moonBook officer purrr readr rlang rmarkdown rvg shiny shinyWidgets stringr ztable]; }; rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsample = derive2 { name="rsample"; version="0.1.1"; sha256="01xwhj4zfvxbv9cjb6mbz3aphxqc3cnjjx1xy2yx2wd94fbka42z"; depends=[dplyr ellipsis furrr generics lifecycle purrr rlang slider tibble tidyr tidyselect vctrs]; }; @@ -15941,7 +15978,7 @@ in with self; { rsconnect = derive2 { name="rsconnect"; version="0.8.25"; sha256="1kyr4v7vds2yw3xmkk2yr56ylz1h95944brylwvwmwj5yxvm419w"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.21.0"; sha256="0jf7pan0v50sg8nz72c5rp3pi34b0r75j7laq9idqsfcgsp0flaj"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; + rscorecard = derive2 { name="rscorecard"; version="0.22.0"; sha256="1srhpbp9mm6ig60rdkv696vm49j0fcqvhfg8d3x6zs3a0ipnz6wb"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; rsdNE = derive2 { name="rsdNE"; version="1.0.0"; sha256="1faa6m2y4i6dqzgzj8glfcf5j438m3qqxcz1rgk7w20x3g24ddyx"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.6"; sha256="1sw8pp2j22rs1nlsyphyqbhywgplan9qmrs5wm9wvrn5g26k4bg9"; depends=[httr plyr R6 XML]; }; @@ -15950,17 +15987,16 @@ in with self; { rsetse = derive2 { name="rsetse"; version="0.5.0"; sha256="095f37a48l9dhz5s3zri6y1kv74x150wrrxinrh177mi3m63shgr"; depends=[dplyr igraph magrittr Matrix minpack_lm purrr rlang tibble]; }; rsf = derive2 { name="rsf"; version="0.2.2"; sha256="016q6yly2vl6q9mkff2krri2rmzsm9gc9gippd8l38h5c8ri6cdl"; depends=[bookdown knitr magrittr rlang usethis yaml ymlthis]; }; rshift = derive2 { name="rshift"; version="2.1.1"; sha256="1ihliavs1qsvp732mpbbdp1psr663j3csmg18j74fi26g3ny5kny"; depends=[dplyr ggplot2 magrittr tibble zoo]; }; - rsimsum = derive2 { name="rsimsum"; version="0.11.1"; sha256="0i09xx2pzvcabk8bnc0gg99vm2kknwdy0r9d7skqgz3xcbkm3yyn"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; + rsimsum = derive2 { name="rsimsum"; version="0.11.2"; sha256="00iq65z4fd23vj6znwpbg2m3risba8pwh4qk5z8fz929a9zjxc2h"; depends=[checkmate generics ggplot2 ggridges knitr lifecycle rlang scales]; }; rsinaica = derive2 { name="rsinaica"; version="0.6.1"; sha256="1ba19b2fgnnl50qp6hgjppgxbadghq68qap9f0m51k2k3ijgfiwn"; depends=[dplyr httr jsonlite lubridate stringr]; }; rskey = derive2 { name="rskey"; version="0.4.4"; sha256="1la3apypp1kk425r753vqwm3nk9zmynp9gix6db0ckkssw0fjxpw"; depends=[berryFunctions rstudioapi]; }; rsleep = derive2 { name="rsleep"; version="1.0.4"; sha256="0rb9dpy1ks04mqb0aismkj0zg9sigyrbgb6j0rl9cw2npp0jz7vg"; depends=[edfReader ggplot2 jsonlite phonTools psd signal]; }; rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.1"; sha256="19451icfh7snjbbmpzpr1hrdf52q8ijv0ag1di3y55r2la3jxxcf"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.3"; sha256="1dcjsn3wa7rqdpixh37vjgk3z5siwlyn70qffp49m3awn258hwpg"; depends=[estimability]; }; - rsmatrix = derive2 { name="rsmatrix"; version="0.2.1"; sha256="02l7hcbwjilcpmgxi2gs9hcf75kb7g2m2b31rmwd2kvhdn2w4s3q"; depends=[Matrix]; }; + rsmatrix = derive2 { name="rsmatrix"; version="0.2.3"; sha256="0ry9xs49w7si14gasj05rzhkiqnd7x89hq72l63r5gyr1g67rwc6"; depends=[Matrix]; }; rsnps = derive2 { name="rsnps"; version="0.5.0.0"; sha256="1pnf3j2hdgx4is1387ysrrg3izq1jyn2p00ia5hhdzkkfl1pbqcr"; depends=[crul data_table httr jsonlite plyr stringr]; }; - rsoi = derive2 { name="rsoi"; version="0.5.4"; sha256="1gchznfshp91i3if8077qph26flxzwa2xrw3q488ah50725d63hw"; depends=[curl memoise]; }; - rsolr = derive2 { name="rsolr"; version="0.0.11"; sha256="0h82x9ihzgw9l1ksn1l5w7x3vgyy6zlbdbvg9a4pa1iinhlf87ic"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; + rsoi = derive2 { name="rsoi"; version="0.5.5"; sha256="13afk5rf2gdnikd36x00513kafkcfh0q9hqzsn331fqggxr1nfyi"; depends=[curl memoise]; }; rspa = derive2 { name="rspa"; version="0.2.5"; sha256="0jvrr3jaw66zqi5pal9dycpac24dn9v7lf2m63q01wmd8m3mlnv9"; depends=[lintools validate]; }; rsparkling = derive2 { name="rsparkling"; version="0.2.19"; sha256="1rb43lslhlg8jpniirzch8gnl86x6d3shcfp9fpxm0qd3fqrlm6z"; depends=[h2o sparklyr]; }; rsparse = derive2 { name="rsparse"; version="0.5.0"; sha256="0d05h47j29zipyxbkv9cwzv2dzj894z6hh9dqfhwswwjbv6ciwpq"; depends=[data_table float lgr Matrix MatrixExtra Rcpp RcppArmadillo RhpcBLASctl]; }; @@ -15996,7 +16032,7 @@ in with self; { rt = derive2 { name="rt"; version="1.1.0"; sha256="1wwx3pjwsqvar25cddc4090vcngir81a7n9yiv4q8i47h58xmc2g"; depends=[httr stringr]; }; rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; - rtables = derive2 { name="rtables"; version="0.4.0"; sha256="1bnrrgybbnpiivdlwihvp5j9rr5fz39vqwl5w8vqvxg1pcjr6qaq"; depends=[htmltools magrittr]; }; + rtables = derive2 { name="rtables"; version="0.5.0"; sha256="0qlcgygrbaamp9pa43lx416pb4xyfzvzmc39i4c5wvcdrl7167v5"; depends=[formatters htmltools magrittr]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; rtdists = derive2 { name="rtdists"; version="0.11-5"; sha256="1v8yhyvliw3dm3ciwxxaa9spfw05wp334l7gmvgv20mab2kjxkwp"; depends=[evd gsl msm Rcpp]; }; rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; }; @@ -16017,11 +16053,12 @@ in with self; { rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.3.3"; sha256="1lnjwslx1l0vgysw3m1s83h246grplmv4mdk4m6ym83mrdmkzvhi"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; - rtrend = derive2 { name="rtrend"; version="0.1.2"; sha256="01d2538qjgs9nng7gmb8y9a0wsxg6gm3p9z1m15sap1g5wl3z6fs"; depends=[boot fftwtools ggplot2 magrittr matrixStats Rcpp RcppArmadillo]; }; + rtrend = derive2 { name="rtrend"; version="0.1.3"; sha256="0figwgxbb1ir7qc4f0138xgj6lry1v6jpq03dyfnp5xsqq3z22yg"; depends=[boot fftwtools ggplot2 magrittr matrixStats plyr Rcpp RcppArmadillo terra]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrim = derive2 { name="rtrim"; version="2.1.1"; sha256="1l2ijkm4p3nd7n4q1b4y9pdyafgyf76zizpi7hhzw1rr9zkxhff2"; depends=[]; }; rtry = derive2 { name="rtry"; version="1.0.0"; sha256="1sac82z2jk5cp7cr3m6l07b6rk0ims0bsm3pvmk870v014brkim4"; depends=[curl data_table dplyr jsonlite tidyr]; }; rts = derive2 { name="rts"; version="1.1-3"; sha256="1lnfqmi49lmk7zhmgyl1z9hlfxh3gg373wj81x7vw9964564r4wg"; depends=[raster RCurl sp terra xts zoo]; }; + rts2 = derive2 { name="rts2"; version="0.3"; sha256="19h3smwmgpapp47iv1p16mx7ar19zrhpjyzlmv4bq3qsgbw8qjm9"; depends=[BH lubridate R6 Rcpp RcppEigen RcppParallel rstan rstantools sf StanHeaders]; }; rtsVis = derive2 { name="rtsVis"; version="0.0.3"; sha256="0j48p4cdkd3dwc5bxv8kmmqj38yaq4rz0wp47kx21msbajcw5m3m"; depends=[assertthat dplyr forcats ggplot2 magrittr moveVis pbapply raster RStoolbox sf sp tidyr]; }; rtsdata = derive2 { name="rtsdata"; version="0.1.3"; sha256="0ylw8m0wf6jvjl3zirns6qk71lwsrljnvz5dn1ngvp7c1x7y1wn9"; depends=[anytime brotli curl data_table mongolite Quandl quantmod xts zoo]; }; rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; }; @@ -16036,7 +16073,7 @@ in with self; { ruimtehol = derive2 { name="ruimtehol"; version="0.3"; sha256="1qscaj28xrrqccav0y82mn5nzkc8zfgmx2axg7bxrrhqaibfpy5j"; depends=[BH Rcpp]; }; ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; ruler = derive2 { name="ruler"; version="0.2.4"; sha256="159k7453jb37zgjg9rcgz566mz2827dpfq5gm40r6zgkia4z3apx"; depends=[dplyr keyholder magrittr rlang tibble tidyr]; }; - rules = derive2 { name="rules"; version="0.1.2"; sha256="1mmwlrybkv2xq49rwfv2d60wzl6hiq9jdyy9blw24vlvbyp0c42p"; depends=[dials dplyr generics modeldata parsnip purrr rlang stringr tibble tidyr]; }; + rules = derive2 { name="rules"; version="0.2.0"; sha256="181ixpmay2w47dn4ali3mamkwy6mcb6ybrx6cdw5npk73davzdwa"; depends=[dials dplyr generics modeldata parsnip purrr rlang stringr tibble tidyr]; }; rumidas = derive2 { name="rumidas"; version="0.1.1"; sha256="1hnkjj689kn7sx5gvjrh1x3n5pickb9d0adb5n0grjq4j5ympbns"; depends=[highfrequency lubridate maxLik Rdpack roll tseries xts zoo]; }; runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; @@ -16061,7 +16098,7 @@ in with self; { rvest = derive2 { name="rvest"; version="1.0.2"; sha256="1905vxgnj3q09l1wf6rwxpbpydznp06nbkrclnc05j2415z4gfw9"; depends=[httr lifecycle magrittr rlang selectr tibble xml2]; }; rvg = derive2 { name="rvg"; version="0.2.5"; sha256="1i0alsr9ahl54gwszvaqz5qgiqs85wwzs5d31z97x315sk3n994j"; depends=[gdtools officer Rcpp rlang xml2]; }; rviewgraph = derive2 { name="rviewgraph"; version="1.4.1"; sha256="0j6g9qwxf4bzv9lr7fkgmk60cqid8kmck1x9kjf8il89qahbvsfs"; depends=[rJava]; }; - rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.1.1.1"; sha256="1k881xrxiwg097rxvmb6z85paqsw7q2n1fg6vl51mfsffy4d57vp"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; + rvinecopulib = derive2 { name="rvinecopulib"; version="0.6.1.1.3"; sha256="08mzp1slfpi7r51z8d3q6mqblmklhc8a8ajw90z3iljc3d28j891"; depends=[assertthat BH kde1d lattice Rcpp RcppEigen RcppThread wdm]; }; rvkstat = derive2 { name="rvkstat"; version="3.2.0"; sha256="0nk6bx04jnm55k5323w1n4zg7qgds6c53fvdz329kqfsrmpj4wgq"; depends=[dplyr httr jsonlite lgr stringr tidyr]; }; rvmethod = derive2 { name="rvmethod"; version="0.1.2"; sha256="1g2d5pvz5s1sj2kalxaz7nb8874m4113ly809zbimngi1lhg8zi1"; depends=[assertthat locfit]; }; rwa = derive2 { name="rwa"; version="0.0.3"; sha256="11irb6ayr1a1rbmhc9zqwyb1vjfc0fq7imji0lfa30zplwgf1mqh"; depends=[dplyr ggplot2 magrittr tidyr]; }; @@ -16089,7 +16126,7 @@ in with self; { s2 = derive2 { name="s2"; version="1.0.7"; sha256="0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-31"; sha256="0gnp703blgawfymd6nxz98w8g7sabagrnk3qc3d3cxj887w83gih"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="1.1.0"; sha256="1sx7zmd0m0ny3jm7m5r1x327pw0qn8j0ny02yv6ki7kpbh6mk0pw"; depends=[abind bigmemory ClimProjDiags easyNCDF mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; - s2dverification = derive2 { name="s2dverification"; version="2.10.1"; sha256="06syzn04da3dka1j936hiqqnpif56mb9q2s42bfv95467zvvf3pg"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; + s2dverification = derive2 { name="s2dverification"; version="2.10.2"; sha256="02i2xfrxyia570v7v4kyqcwznw732pijxwf0r6rhgag7ndmnivj7"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s2net = derive2 { name="s2net"; version="1.0.1"; sha256="1f6lc8azx8lax7jc5ggzirwnp5d9ka2plimfkg70vx783xf56zaw"; depends=[MASS Rcpp RcppArmadillo]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; sAIC = derive2 { name="sAIC"; version="1.0"; sha256="1ih63cfs98kb61gwbmrx2yq7iacb5qa1qrh1a264041qd27r5pj5"; depends=[]; }; @@ -16102,6 +16139,8 @@ in with self; { sGMRFmix = derive2 { name="sGMRFmix"; version="0.3.0"; sha256="183i3159k2cxpanm09zcy2y1vvjd6185gjjf81c3284prw3aky2c"; depends=[ggplot2 glasso mvtnorm tidyr zoo]; }; sNPLS = derive2 { name="sNPLS"; version="1.0.27"; sha256="0h05crdmwmzax4pwmyxb2z1dagyqb3kybpxc064y1kl8m84kcyvv"; depends=[clickR future future_apply ggplot2 ggrepel ks MASS Matrix pbapply]; }; sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; }; + sRNAGenetic = derive2 { name="sRNAGenetic"; version="0.1.0"; sha256="1cvk40rkbxvr8jhwfqkgdfy150mi56y976pjp2w34rnghry6ql8z"; depends=[DESeq2 futile_logger ggplot2 ggsci plyr VennDiagram]; }; + sRdpData = derive2 { name="sRdpData"; version="0.1.0"; sha256="0zflpc44q6bj9rr8yhv5h7ksgmxrsvv28vfpvqbn3yd46hn1fdj7"; depends=[dplyr magrittr rlang tibble]; }; sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; }; sValues = derive2 { name="sValues"; version="0.1.6"; sha256="0830f4w6jgpiysk0vz0bxaxwa8m3k94fgj9l3qb42r3jjf9cdn29"; depends=[ggplot2 reshape2]; }; saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; @@ -16115,12 +16154,16 @@ in with self; { sae = derive2 { name="sae"; version="1.3"; sha256="1ncrlzgnga9pfa2j8x1y6axl2665rp08aff98zrim6gq6n6yap8z"; depends=[lme4 MASS]; }; saeBest = derive2 { name="saeBest"; version="0.1.0"; sha256="0s68w9cikhpac1kdlm1pphvnks1izacs5s87d7r380c3lkgkzd76"; depends=[sae]; }; saeHB = derive2 { name="saeHB"; version="0.2.0"; sha256="0ahll2jqn7bxd0l629n8zj80y37acspy2m6vhjbg96206i49mnr5"; depends=[CARBayesdata coda MASS nimble rjags stringr]; }; + saeHB_ME = derive2 { name="saeHB.ME"; version="1.0"; sha256="0wvh31lhl79fapp96kz6vaa0a8lg3j472vw1gjcjmbvijp9ywywr"; depends=[coda rjags stringr]; }; + saeHB_ZIB = derive2 { name="saeHB.ZIB"; version="0.1.0"; sha256="0jb3pk99315mybvhm1y2jk62jgdnjln0c86z3g362r1nr718hdn7"; depends=[coda rjags stringr]; }; + saeHB_gpois = derive2 { name="saeHB.gpois"; version="0.1.0"; sha256="131flxcc8mjqix2gnby66gdjnzncgbciqriqzwz18brq85amignc"; depends=[coda rjags stringr]; }; saeHB_hnb = derive2 { name="saeHB.hnb"; version="0.1.0"; sha256="00sms01xb290h555v5ngp5vnaancq165mcvli8dmni0mfdx5i7p3"; depends=[coda rjags stringr]; }; saeHB_panel = derive2 { name="saeHB.panel"; version="0.1.0"; sha256="1nj237lpypz9vpamic4qm17x0p36yqdy8mmgy778c1dhmpvmwrfs"; depends=[coda rjags stringr]; }; saeHB_spatial = derive2 { name="saeHB.spatial"; version="0.1.0"; sha256="0fqc3c5y4rwfpgfbwfsrdhqlwjbal28wi9djm1vlncr8phkzfpln"; depends=[coda rjags stringr]; }; saeHB_twofold = derive2 { name="saeHB.twofold"; version="0.1.0"; sha256="0jmabk649lfsrjx4an0a8x5kpb4agfw9gqjilsf1pmqvq725a9bv"; depends=[coda data_table rjags stringr]; }; saeHB_zinb = derive2 { name="saeHB.zinb"; version="0.1.0"; sha256="1gqb6xwfyz171md058m0kva2pj6hir09p784jwch2i1m9mvzinma"; depends=[coda rjags stringr]; }; saeME = derive2 { name="saeME"; version="1.2.4"; sha256="02yf5rf2kavwl3icfnsjg0kxmifrcc7v4j5jsfrfa8ssfbwcivhn"; depends=[ClusterR dplyr expm MASS]; }; + saeMSPE = derive2 { name="saeMSPE"; version="1.0"; sha256="1xx9z1daghyx366h0mz9wikbkwiq8zbd2k1sm86jc45xjz5zwlrc"; depends=[Matrix Rcpp RcppArmadillo smallarea]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.11.0"; sha256="0s0zcls4j3cx7wbvi0l3q4c3b0f9x9i2wcqnz4gzwyqik6pcfaic"; depends=[dplyr functional ggplot2 MASS parallelMap spdep tibble]; }; saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; @@ -16128,10 +16171,11 @@ in with self; { saemix = derive2 { name="saemix"; version="3.0"; sha256="17ax2cvlk69y8f00xgbdibycxng45kx175b518sdlkrm49pdxm7h"; depends=[ggplot2 gridExtra npde rlang]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; + safedata = derive2 { name="safedata"; version="1.1.0"; sha256="0ifdf9i2r4w9y6c08fmg91znckpfmwm3xmxlc576mcgwballkx4f"; depends=[chron curl httr igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safestats = derive2 { name="safestats"; version="0.8.6"; sha256="1rn3hawh6jn8dszdjr80l15g83n52agch2j3znzb0jmg7qkxd383"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; - safetyCharts = derive2 { name="safetyCharts"; version="0.2.0"; sha256="1gdrl7wmxlvnk8wghrjv3cnvdsmx79f1s0j51yb4q94dxprssajh"; depends=[dplyr DT forcats ggplot2 huxtable kableExtra knitr pharmaRTF RColorBrewer rlang shiny stringr Tendril Tplyr]; }; + safetyCharts = derive2 { name="safetyCharts"; version="0.3.0"; sha256="1riyd2rb799rr0j95s3wd45rwq8syfm0xllpihycpak0f56vg1s8"; depends=[dplyr DT forcats ggplot2 htmlwidgets huxtable jsonlite pharmaRTF plotly purrr RColorBrewer rlang shiny stringr Tendril Tplyr]; }; safetyData = derive2 { name="safetyData"; version="1.0.0"; sha256="1spa1wh1z8cqsz8vrkj3abny0xs3qp8d80dla8d031d70hvfkdjc"; depends=[]; }; safetyGraphics = derive2 { name="safetyGraphics"; version="2.0.0"; sha256="1y1qj8vhq3z3g4ij2qkc5cpwc5zknmjnp3kpkbcr9cywjrdpa5pq"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr yaml]; }; sageR = derive2 { name="sageR"; version="0.3.0"; sha256="093qxwbkf8cqc3zjad232987qq2155faj8w2qplwxzvg881f0yi0"; depends=[ggplot2]; }; @@ -16171,7 +16215,7 @@ in with self; { sankeywheel = derive2 { name="sankeywheel"; version="0.1.0"; sha256="1sigj4jz13qj4s8vxk0dl2xsddqgyfxabj8yggkasawm7pryvbyy"; depends=[htmlwidgets]; }; sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; - santoku = derive2 { name="santoku"; version="0.6.0"; sha256="1kwyc9c8fhfxr6kh9wkrw1ywqx5hjrp0dfvl97qzcly0g28432fs"; depends=[assertthat lifecycle Rcpp vctrs]; }; + santoku = derive2 { name="santoku"; version="0.7.0"; sha256="0li58ilaya2gkrxghl0zvbvp4hadlxvl6azn9ggxn9340chyn8b8"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; @@ -16184,10 +16228,10 @@ in with self; { sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.9"; sha256="1rjpgicgy9vfi9q2vldrbbakybmazal5gh79p2kysnzhcr76v3z5"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.6.6"; sha256="04gmh6sakxl2dgslyfqm7pixyjngvnkhw1xpp9n67fv62rjs8vai"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.8.0"; sha256="0g06jqlsc54h50bqjvxi3vbg00ksdaxxfrir5mnnf35qlgcbsszr"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; - sass = derive2 { name="sass"; version="0.4.0"; sha256="0axw358bbk3vxsqg3wq0bz3xigasa6af8fxvi2ga8hli4cawl1kx"; depends=[fs htmltools R6 rappdirs rlang]; }; + sass = derive2 { name="sass"; version="0.4.1"; sha256="1fq8wqnxmx10lg0dh4qzmxdkhd22fjh8vhassapxb1chsimwn3w5"; depends=[fs htmltools R6 rappdirs rlang]; }; sassy = derive2 { name="sassy"; version="1.0.7"; sha256="0z65pvvw4hcw605hp7vpr99vmmf7isk2fxvxxa9ahfk1jig62hcc"; depends=[fmtr libr logr reporter]; }; sate = derive2 { name="sate"; version="1.1.0"; sha256="0d1b0gp5abh5g7a25ff40xdnncrl2afjnlcc56dbhqkk43gjah17"; depends=[MASS]; }; satellite = derive2 { name="satellite"; version="1.0.4"; sha256="0z6wh0nmzxgizd8rzafkq8hkxx9s8lkaqins68697284lxvrbrwr"; depends=[plyr raster Rcpp terra]; }; @@ -16210,17 +16254,17 @@ in with self; { sbtools = derive2 { name="sbtools"; version="1.1.17"; sha256="1i6jf0av3r413nh6kyhd2kxljaqbr401cnx5a33jb10vixsr56c7"; depends=[curl httr jsonlite stringr]; }; sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; - scCAN = derive2 { name="scCAN"; version="1.0.1"; sha256="08rrx3bk1w4lx886lvgc37xblq5hd68jrhg66yp5w16va5a97bqr"; depends=[FNN markdown purrr scDHA]; }; + scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; }; scCATCH = derive2 { name="scCATCH"; version="3.0"; sha256="0hq65zz8mm71i7hnpfafwmwr5vcf58m62lqqliifjbpl8rgc73yj"; depends=[crayon Matrix progress reshape2]; }; scDHA = derive2 { name="scDHA"; version="1.1.2"; sha256="02iwkbh83h1xdckj30xg1azspq2v6sjrzpjgm6d1n14afgafv8x9"; depends=[cluster clusterCrit doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; scINSIGHT = derive2 { name="scINSIGHT"; version="0.1.3"; sha256="0hffigfi41crib98kazax4m6g70qdbcnhd4ycs432c4nlafbsdfm"; depends=[igraph RANN Rcpp RcppArmadillo stringr]; }; - scITD = derive2 { name="scITD"; version="1.0.1"; sha256="0x20yiwafalsfgxcmbia05vrfp7bpvwkgxgrdrxjpzhs07q527wk"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; + scITD = derive2 { name="scITD"; version="1.0.2"; sha256="0z6b0naz44am9z6mw03k5b550j19xgaxqyklhc57ns0lfv0l506k"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; scImmuneGraph = derive2 { name="scImmuneGraph"; version="1.1.3"; sha256="0mvajasskcl4v0bjwzvkqjdicxb0329nxk93ich7qr37wfcp2n1n"; depends=[BiocStyle cowplot dplyr easypackages forcats ggplot2 gtools plyr purrr RColorBrewer readr scales stringr tibble tidyr tidyverse]; }; scLink = derive2 { name="scLink"; version="1.0.1"; sha256="0gcwx8kfik1lv949r9d9rqqnvrfkr4bj5cj2i9h1r7l1b76kna74"; depends=[glasso]; }; scMappR = derive2 { name="scMappR"; version="1.0.9"; sha256="1b2jrbqy9dcvv9ng7mz8xxggqc5iy4n0h59xksin3m9gvpvsc0sw"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; - scModels = derive2 { name="scModels"; version="1.0.2"; sha256="02nn8nv77fgmskx5zsa34ij9lzq9jiv8w2vmw5863v55khzvfs53"; depends=[gamlss_dist Rcpp]; }; + scModels = derive2 { name="scModels"; version="1.0.3"; sha256="0wc7mif6q7li7qqsxc7s5s2jgg4ahwf348xzb5zpr2nhbcb5s4x6"; depends=[gamlss_dist Rcpp]; }; scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; }; @@ -16230,15 +16274,16 @@ in with self; { scUtils = derive2 { name="scUtils"; version="0.1.0"; sha256="09c4vwrjj4r0nfcwb8q0a243m0v5wa3qisdlcy7ik58gyxp02zv8"; depends=[assertthat dplyr ggplot2 Matrix scales viridis viridisLite]; }; scaRabee = derive2 { name="scaRabee"; version="1.1-4"; sha256="1p9828ymdm79b91z2fc2r5wy6i4hr1mx8fva6lr154c82ba3569z"; depends=[deSolve lattice neldermead optimbase optimsimplex]; }; scaffolder = derive2 { name="scaffolder"; version="0.0.1"; sha256="1va1mlhqv5qn0hm81ypdir9llr68222qxjp3jink69zpaskfbdib"; depends=[reticulate]; }; - scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; }; + scagnostics = derive2 { name="scagnostics"; version="0.2-6"; sha256="0b5fkzhvr1js3l7s9wl12jspyklxm6ri6cn6brf949gfl4bjnnq9"; depends=[rJava]; }; scaleAlign = derive2 { name="scaleAlign"; version="1.0.0.0"; sha256="0340biwz0md6sxq5iq5wiz6q8kcrll80429f1ab9zz88k3fya2s6"; depends=[]; }; scaleboot = derive2 { name="scaleboot"; version="1.0-1"; sha256="1q0bs5f1vgja5gj3id1ny6raja8ljgd8dk50fs1wn90f6080afy7"; depends=[mvtnorm pvclust]; }; scales = derive2 { name="scales"; version="1.1.1"; sha256="019ps0njjc0rzrjygqiyn8b9vp0c3c0jd56h1yi19wzi49jvdcj0"; depends=[farver labeling lifecycle munsell R6 RColorBrewer viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.3"; sha256="0c8k99i5v2ki2bmcjjr6rfk7y1ds7jlykdwgn5x2zvzpdw7p4vlw"; depends=[gam igraph Matrix protoclust R_matlab]; }; scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; scam = derive2 { name="scam"; version="1.2-12"; sha256="0jlgx2v3jm8yk3gc7sk4mnlahd1cnarbakj2353qhw0k492gir8c"; depends=[Matrix mgcv]; }; - scan = derive2 { name="scan"; version="0.53"; sha256="1j5wldd62lf1f73vdhsk1pklnq10di2m2wj4jwjy8vn7gcxianqj"; depends=[car kableExtra knitr magrittr mblm meta nlme readxl]; }; + scan = derive2 { name="scan"; version="0.54.1"; sha256="1v9d2ji7glgmjmb9df6hrdg3bzx6zdd69d5ly5k3sjfldhp3762m"; depends=[car kableExtra knitr magrittr mblm meta nlme readxl yaml]; }; scape = derive2 { name="scape"; version="2.3.3"; sha256="1jb5c335qsbrpsgngs8c1qlibyb7zvvx6mwydfhm1plx4pkcq0n1"; depends=[coda Hmisc lattice]; }; + scapesClassification = derive2 { name="scapesClassification"; version="1.0.0"; sha256="0kwl9mbzcmn5qzqbzabf2igbhwbf5m1b1wa8rhm8mfv2qz7psyf2"; depends=[terra]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; @@ -16260,7 +16305,7 @@ in with self; { scholar = derive2 { name="scholar"; version="0.2.2"; sha256="1irigcws62sz1ai3ci80cdgwgisnra8kylqb2hxx3h62ddlpzhg7"; depends=[dplyr ggplot2 ggraph httr R_cache rvest stringr tidygraph xml2]; }; schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; schrute = derive2 { name="schrute"; version="0.2.2"; sha256="1j1bb7inhxq355kvqmp45zgxz41d3rpbh2rxk9wkahsbiy0cdybn"; depends=[dplyr ggplot2 magrittr stringi stringr tibble tidyr tidytext]; }; - schtools = derive2 { name="schtools"; version="0.1.0"; sha256="02qlncaddbyvm38ja480qd92gqbs06wxb49902g81mc918gmxqf6"; depends=[dplyr formatR rlang tidyr]; }; + schtools = derive2 { name="schtools"; version="0.1.1"; sha256="16s64jw4i18y0mzcp4q39diqbynxddcmnmxingsrh5v3qbk2am5q"; depends=[dplyr formatR rlang tidyr]; }; schumaker = derive2 { name="schumaker"; version="1.2.1"; sha256="15i39lzkd1qggd35sp39vy922y3y1n9drjkidz7asniv1miali6j"; depends=[]; }; scico = derive2 { name="scico"; version="1.3.0"; sha256="08grfbjd5s0vdw76ni37yjl2242rr8i2jy72sgpwgra282hpnji3"; depends=[scales]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; @@ -16279,11 +16324,11 @@ in with self; { scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; scoringutils = derive2 { name="scoringutils"; version="0.1.7.2"; sha256="1njdvy6fzw20xb13mpdqczvap88jfxxnid31nmrkq9yzjdigjv2c"; depends=[data_table forcats ggplot2 goftest scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; - scpi = derive2 { name="scpi"; version="0.1"; sha256="06h8sqqhrja8m9ps8snwzm3zyp6iysdki9n47sv4xw0dixj7v5mp"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr Matrix nloptr purrr Qtools rlang stringr tibble tidyr]; }; + scpi = derive2 { name="scpi"; version="0.2.1"; sha256="043ifc7s7zaw1v1c52613jl9rasb32ia3l2njhf1gixdvah334di"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr Matrix nloptr purrr Qtools rlang stringr tibble tidyr]; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; + scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; - scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; }; scrappy = derive2 { name="scrappy"; version="0.0.1"; sha256="0dckq2pdqabnv5cinfqgbrjxp55x4z81lp8xh4yhyb2cnz9gdsqy"; depends=[magrittr rvest xml2]; }; scrime = derive2 { name="scrime"; version="1.3.5"; sha256="0y2mh9fsffjf3i15bafpasa17z99c1s75r8g6h4hgcwfgpjx75sx"; depends=[]; }; scriptName = derive2 { name="scriptName"; version="1.0.1"; sha256="1rd3qj7c7pg454a5mxhr64g4kp15cqf5lf8lbsh9x88llvkjci5v"; depends=[purrr rlang]; }; @@ -16305,9 +16350,9 @@ in with self; { sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.2"; sha256="198bk08qz5xr07pkc9yj3n9rzgv5ssijhg9fwhhrg35rf7jni1s8"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; - sdcLog = derive2 { name="sdcLog"; version="0.4.0"; sha256="0rph0jha8x5mqzcpad3px89ppqbxccsx896mhpxw9pxrpk82aiig"; depends=[broom checkmate crayon data_table mathjaxr]; }; + sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.6.1"; sha256="12maw34ibsa2fpdxy4ww8nbsllfvcjvf5idg4m4z0fjsbmd7li51"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; - sdcSpatial = derive2 { name="sdcSpatial"; version="0.1.1"; sha256="1szv2nb758k3x5scxml2ns11fi99rlmd11r3fhzy3dgylf0m0xnm"; depends=[raster]; }; + sdcSpatial = derive2 { name="sdcSpatial"; version="0.5.2"; sha256="0bnq63akzngvf6r9csg11cb98mhwd8ybrqrk4v2i0iiln70sf7b6"; depends=[raster]; }; sdcTable = derive2 { name="sdcTable"; version="0.32.2"; sha256="0xp27akglxakqakq3a1415an9446sz0caajjmhh9pwk3mzxh2n3q"; depends=[data_table glpkAPI knitr lpSolveAPI progress Rcpp Rglpk rlang sdcHierarchies slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; @@ -16328,7 +16373,7 @@ in with self; { searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; }; searcher = derive2 { name="searcher"; version="0.0.6"; sha256="03q9nq5zkj344swq3ppliz6dhwaddls8xv633s6brccmrcgdaivm"; depends=[]; }; seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; - season = derive2 { name="season"; version="0.3.14"; sha256="1hdn0ji631ga0wadd4w0vph0s59dpcq1q36g0aii07jd0mc1wifv"; depends=[ggplot2 MASS survival]; }; + season = derive2 { name="season"; version="0.3.15"; sha256="0f63ichlnj49g0ni9560avr4415iyj5061pixkjmqj83y7bbsz22"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.8.4"; sha256="1mqlck752d9hmzmkmjw9qq7g9kkrwbzglsm7sx0xc03qbm5zxd3k"; depends=[x13binary]; }; seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; seasonalityPlot = derive2 { name="seasonalityPlot"; version="0.99.3"; sha256="12z15qlvyj9rrljzqbhgh384x53qqylwmzias4bhx0k3hq2qvsrj"; depends=[dygraphs htmltools magrittr plotrix quantmod zoo]; }; @@ -16343,11 +16388,12 @@ in with self; { secsse = derive2 { name="secsse"; version="2.1.7"; sha256="0cad1flym8bhra11chc16ylfa3i0nhi9jyy6r4nacwh6qpbbavjg"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; }; secuTrialR = derive2 { name="secuTrialR"; version="1.0.9"; sha256="0g84jrh42kx3w1m6spw80rwx7vzjf7x1qabqap4h6ayrczacxq4r"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; - see = derive2 { name="see"; version="0.6.9"; sha256="0r42dm3zwjszfn6sga6ljgczaksgnn4n92y7bm3qysvcfnywvqq4"; depends=[bayestestR datawizard effectsize ggplot2 insight parameters]; }; + sedproxy = derive2 { name="sedproxy"; version="0.7.3"; sha256="176wyi8jvk15r4k7hdax2ad37rsbhr54jlsj0y7p8ayhk1vd89am"; depends=[dplyr ggplot2 mvtnorm readr rlang shiny tidyr]; }; + see = derive2 { name="see"; version="0.7.0"; sha256="1f3i5mplxbpfpwxy4qggxyiv2vqxxbzld0w08w66173f99rfblf7"; depends=[bayestestR datawizard effectsize ggplot2 insight parameters]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.1.0"; sha256="1ijxyys8pwlm99ynmv86cgn8pzz1ivaxzh3rq1akzv17nz93jv61"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.0"; sha256="076pkv083dp71m6ifjzx9spfwmc1625r9d72spf0vhf8pwwsha4v"; depends=[CCA corpcor]; }; - seededlda = derive2 { name="seededlda"; version="0.8.0"; sha256="1wl7j2p1hfk1y9c05bq49n6zfcnkmijdp03c16ay7dhjqrhkwad6"; depends=[Matrix quanteda Rcpp RcppArmadillo RcppParallel]; }; + seededlda = derive2 { name="seededlda"; version="0.8.1"; sha256="13hjc2yw0mkmsk50q31746c29gaiz3asi8k1ld76l1ziy2dsp9ji"; depends=[Matrix proxyC quanteda Rcpp RcppArmadillo RcppParallel]; }; seedr = derive2 { name="seedr"; version="0.3.0"; sha256="15drbc0iplb97a2sym6jnrwij7ak5qckcw98n3m65x45apjwdmhq"; depends=[binom data_table]; }; seedreg = derive2 { name="seedreg"; version="1.0.2"; sha256="16nr2hkwc0vfkd76ky592r1ymlmpakvxsmammih3fii9d4l8mlab"; depends=[boot car crayon drc emmeans ggplot2 hnp multcomp multcompView stringr]; }; seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; @@ -16359,9 +16405,9 @@ in with self; { segclust2d = derive2 { name="segclust2d"; version="0.3.0"; sha256="0gzxm4dgkfh80vyxl5xxhjr26s5hnzn85dmcvavfihbhqin6nj1s"; depends=[cli dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 rlang scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.4-0"; sha256="0xn28gyqzmyz0kv352rkkznbj806arxj2am5a9gqsn1qzv9l0s9h"; depends=[MASS]; }; + segmented = derive2 { name="segmented"; version="1.4-1"; sha256="1aagn2v48ncwxx79h601nlalbgc40fc81nqaw6nbncqkqm0zaxi3"; depends=[MASS]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; - segmetric = derive2 { name="segmetric"; version="0.1.0"; sha256="19hpfxi5n7azri8bnlddil46252q61cg5pbfd307v5px96fw39xd"; depends=[magrittr sf units]; }; + segmetric = derive2 { name="segmetric"; version="0.2.0"; sha256="1nirb5gnbs3vw74fmpapng0bqqwrz5a6c59apkg8s8x0vqxwhfvx"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="0.6.0"; sha256="0yajbbrbrkk6blb6r5y5fwvfz0j8kbc8fr91kb4f53j1afcbbhbx"; depends=[data_table]; }; segregatr = derive2 { name="segregatr"; version="0.2.0"; sha256="02hdwbahcym98f20nnxnn94xsrl4x6gzz26wrg2nhj2cq20fl4s4"; depends=[pedprobr pedtools]; }; sehrnett = derive2 { name="sehrnett"; version="0.0.3"; sha256="09h30j390wnkglzq5c7ihladzmv2i439r27p3np2c850a69m0izp"; depends=[DBI dplyr magrittr purrr RSQLite tibble]; }; @@ -16379,10 +16425,8 @@ in with self; { seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; - selfmade = derive2 { name="selfmade"; version="0.1"; sha256="0d3v202dqr3c2564g6w7k27mhy1nxx7ngpiai7yxq2s88wa7cydi"; depends=[lme4 Matrix mgcv]; }; - sem = derive2 { name="sem"; version="3.1-13"; sha256="0r9g4j0w6q4qy9jl9gkjkihml4109ymg3y6zmhyg806q19qryx07"; depends=[boot MASS mi]; }; + sem = derive2 { name="sem"; version="3.1-14"; sha256="18m54hjl3w57n4ygnkcy80w0dc9dz1zvavjqh9sl6nqs52f9m246"; depends=[boot MASS mi]; }; semEff = derive2 { name="semEff"; version="0.6.0"; sha256="0w919y49kl2vq9psnjn03cwwp99myip5cbvm6jmkkjiikx8iikh0"; depends=[boot gsl lme4]; }; - semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; semPlot = derive2 { name="semPlot"; version="1.1.5"; sha256="0d7v9yqc9nhx3hdrp444w1ah66zai3lg5y778m85r7ngh1prxlvc"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem XML]; }; semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; @@ -16392,6 +16436,7 @@ in with self; { semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.4.1"; sha256="0zsn3r5n7n3dsa02i194lr6ail7mizq9xp8x3kc5k17z4ckcfysd"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; + semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.1.0"; sha256="0bc79j78lp2znck706v15gr8q4zlq92zy4z452jmkh8hkb746qf7"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; seminr = derive2 { name="seminr"; version="2.3.0"; sha256="0p7k2dvld5yfx5x5m97531b6kzkbhxbv308vkb7cakc1kwacj8sa"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; semnar = derive2 { name="semnar"; version="0.7.1"; sha256="0g6l4377i9wdwbcrdhdmsph68bd6qwc5mjlw824mpxn0ggg6vx72"; depends=[jsonlite leaflet lubridate magrittr urlshorteneR]; }; @@ -16421,9 +16466,10 @@ in with self; { sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; sentencepiece = derive2 { name="sentencepiece"; version="0.2.1"; sha256="0mwmgnkmahlik8nl14pkzi351jv9c00iylj7f5h6wkjbrizkdd34"; depends=[Rcpp]; }; - sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.0"; sha256="1i7lihj66wgl1fciqm3kii3plflicjrrpzv8q899wcmky2whfgmf"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; + sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; + sentopics = derive2 { name="sentopics"; version="0.6.2"; sha256="1ix6rcjrp151dkqyqvbf3fg93h7g9714dlgr2q2r00sqpa5xjsdn"; depends=[data_table doFuture doRNG foreach future quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; seplyr = derive2 { name="seplyr"; version="1.0.4"; sha256="09lv2jic2dhwl2pra56kf7087inbjg9b5461dyy2a31h5ji68j08"; depends=[dplyr rlang tidyr wrapr]; }; @@ -16446,7 +16492,7 @@ in with self; { sequenza = derive2 { name="sequenza"; version="3.0.0"; sha256="13l16lacdcf7fn96yj3xqxap0l19ma9ppkxxx5qk9f5abbvdk303"; depends=[copynumber iotools pbapply readr seqminer squash]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; - seriation = derive2 { name="seriation"; version="1.3.3"; sha256="1f6hxbrixqaj4vh4svff5pz9ny9h10snrrigk2r9c59amhkgih80"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; + seriation = derive2 { name="seriation"; version="1.3.5"; sha256="0dlj0mqpg585m6i7yn0h878i8ag6pyqph98xkk42i2nvghpy01gr"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; serp = derive2 { name="serp"; version="0.2.4"; sha256="0hd25rxknj636ssy2289xjvq5fflp2p561yb9w0siqihfc7cfjpc"; depends=[crayon ordinal]; }; @@ -16459,7 +16505,7 @@ in with self; { sessioninfo = derive2 { name="sessioninfo"; version="1.2.2"; sha256="1jy7n37qnrb4fgzmn8s8yf7kv29yw27x8zklwf8qdb2kgj2q6qpm"; depends=[cli]; }; set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; }; - setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; + setRNG = derive2 { name="setRNG"; version="2022.4-1"; sha256="09089vr5x8snwxh38kdhgpjl3jl7zrk056f6f9a2jg5lsrmnxh31"; depends=[]; }; sets = derive2 { name="sets"; version="1.0-21"; sha256="1h1a03b1850kh5hd3gxbspx2nxqxvk2gb0wm0s60b70qb6zg0csp"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; @@ -16478,8 +16524,9 @@ in with self; { sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; sfnetworks = derive2 { name="sfnetworks"; version="0.5.5"; sha256="17lj828ds16v6splx84s8vykvinm3iz0whmx34cr08b7aadw0yqf"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.1"; sha256="0ja0kyrr6vqwk9fj1hq9bvfkak2vgav0hlqpgn4sa9h9j1s8r4js"; depends=[]; }; - sfsmisc = derive2 { name="sfsmisc"; version="1.1-12"; sha256="10h76pgzcxv1y5pkmba9607lvjrsyq62sq63s2n7ry7z5151h4lv"; depends=[]; }; + sfsmisc = derive2 { name="sfsmisc"; version="1.1-13"; sha256="0622yf4fl1b1zm988dfwdrhq7pg0rllhm8wz1pqdmp72glsi05x8"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; + sftime = derive2 { name="sftime"; version="0.2-0"; sha256="1ymi60ag8kqb3293bdcvb83zwsgrz000ylifjvlpzzmh1xsisanq"; depends=[sf]; }; sftrack = derive2 { name="sftrack"; version="0.5.3"; sha256="1dj21n7iqv334va40p4v3rxh87qbpwgq0062f67kpa3jd16xzkmk"; depends=[sf]; }; sgPLS = derive2 { name="sgPLS"; version="1.7"; sha256="1jk2j1zn5vq82rcjflnk7g6y2q0v5jl14k804dmigqg013gbykql"; depends=[mixOmics mvtnorm]; }; sgat = derive2 { name="sgat"; version="0.9"; sha256="14sniq5yfh7xmbnd8d0ighw97352qjgfdg587a6hxafisx9is61p"; depends=[data_table dplyr plyr qdapRegex RCurl RSelenium stringr]; }; @@ -16527,7 +16574,7 @@ in with self; { shiny_info = derive2 { name="shiny.info"; version="0.2.0"; sha256="162wvb02z5h1y7xgsyl6wv88zlfmbm1jlnz48f56fyybs54baw41"; depends=[git2r glue shiny]; }; shiny_pwa = derive2 { name="shiny.pwa"; version="0.2.1"; sha256="120wqqy7fh7nm2bib3dq02a92jb3lykkl7qayiw6bnax8sdr18yw"; depends=[htmltools readr shiny urltools]; }; shiny_react = derive2 { name="shiny.react"; version="0.2.3"; sha256="19k1rvq47s56cipxqbalgzmhwdxw3ic5bd9qqnvsw75ynbhpa959"; depends=[glue htmltools jsonlite logger rlang shiny]; }; - shiny_reglog = derive2 { name="shiny.reglog"; version="0.4.1"; sha256="1azhcz2ffrc82f9yfqfivb9m2alanl4wx1i8q8pyympqw09gg5zy"; depends=[DBI dplyr googlesheets4 lubridate R6 RSQLite scrypt shiny]; }; + shiny_reglog = derive2 { name="shiny.reglog"; version="0.5.0"; sha256="1c0gr5rq2hrxy1zll2g131hz1xkd2yrd2l9pzfqyzb8lr6rvkbh6"; depends=[dplyr lifecycle lubridate R6 scrypt shiny shinyjs stringi uuid]; }; shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.3"; sha256="124bxgbbzx4xkzxqzr16brqdm12ra0pvx1qhqkvp8alvjm0s54vg"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; @@ -16592,7 +16639,7 @@ in with self; { shinymeta = derive2 { name="shinymeta"; version="0.2.0.3"; sha256="1lizg5sjg0f2axr9vk8z4w43lbyim83gd4dzx91dygknv3kgyp89"; depends=[callr fastmap fs htmltools rlang shiny sourcetools styler]; }; shinymodels = derive2 { name="shinymodels"; version="0.1.0"; sha256="177c8ksv17ywyrdyxfr872hc1ajr0l3b9ra8as9q36qcpzl24v7i"; depends=[dplyr DT generics ggplot2 glue htmltools magrittr parsnip plotly purrr rlang scales shiny shinydashboard tidyr tidyselect tune yardstick]; }; shinyobjects = derive2 { name="shinyobjects"; version="0.2.0"; sha256="0fg5gyssia2fqar635vrqgfwpfrk4pqachsgg10y13ljp09lcdm3"; depends=[dplyr glue knitr magrittr pander purrr readr rlang rstudioapi shiny stringr styler tibble tidyr]; }; - shinypanel = derive2 { name="shinypanel"; version="0.1.4"; sha256="0hdfpjfhyqj7ym3bwg5xmhnawl98q7mfl2wj950ysajqi88l91pr"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; + shinypanel = derive2 { name="shinypanel"; version="0.1.5"; sha256="003sp6x78mwjf5hl8m4gqwyxlg3zilli6932l7k82s1hbaksar1j"; depends=[htmltools jsonlite shiny shinyBS shinyjs]; }; shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinypivottabler = derive2 { name="shinypivottabler"; version="1.0"; sha256="04mdzd0j9y1w0iifpgd870haj5b9q8sdmkj4lws0svhkli3ym097"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; @@ -16641,11 +16688,12 @@ in with self; { sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.2"; sha256="1h5wxch6r01bdz7l64alag9f4l8jfx19ym36bj0l9450f8wizncj"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.1.3"; sha256="0zgdrja8iv8i0rknz925z7zb6qxfmfijw28j523rai6kw4hqzvnf"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; signed_backbones = derive2 { name="signed.backbones"; version="0.91.5"; sha256="0xk8sncblzihqzqfpaq7158slvrb6ww3dc4v5di1m2bqwhykncwi"; depends=[reshape2]; }; + signibox = derive2 { name="signibox"; version="1.0"; sha256="0yjdpcyjdlmr6brb3a21wcs5rxryvjsnkhl8v73g2cygbhqba8rr"; depends=[]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; signnet = derive2 { name="signnet"; version="0.8.0"; sha256="0iymm9crvppb7yrp163y5i605bl1mdw7bxzgr5s4zflhzf1njv4s"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; @@ -16683,7 +16731,7 @@ in with self; { simglm = derive2 { name="simglm"; version="0.8.9"; sha256="0spvr8bmdqg97y1qklr8c6svgwsdwa5haar4sbsnvpnrq5fb2baw"; depends=[broom dplyr future_apply purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; simhelpers = derive2 { name="simhelpers"; version="0.1.1"; sha256="0hnqvymmyimh6244r8a8qmmsb799pgj6j6yvgdnhvjmss8ymif9d"; depends=[dplyr furrr future magrittr purrr Rdpack rlang rstudioapi tibble tidyr]; }; - simlandr = derive2 { name="simlandr"; version="0.1.2"; sha256="1f1r22a7w8xqkgavnb6g06if29vf1905d3h32ww9zzxz65g3a9qa"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks magrittr MASS plotly purrr rlang scales tibble]; }; + simlandr = derive2 { name="simlandr"; version="0.2.0"; sha256="009kvq86q78l265xvpqn3nbbf20rnbqflng15zxcb4bg1490x3xb"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang scales tibble]; }; simmer = derive2 { name="simmer"; version="4.4.4"; sha256="1rk6c4i6w3z3zhv2yr2lzhcr10araxxcycn556pncqp4f0ycb2l8"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; simmer_plot = derive2 { name="simmer.plot"; version="0.1.17"; sha256="15bg7y21kgzvgzwzxpdwq9pay92ms2dkg9a1lpqlg5dx892rfr7n"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; @@ -16713,7 +16761,7 @@ in with self; { simrec = derive2 { name="simrec"; version="1.0.0"; sha256="17zzbzgdisp5qh0vlbmkjf6a3axnpwj2kw03wymfbb3z557pbxlr"; depends=[]; }; simrel = derive2 { name="simrel"; version="2.1.0"; sha256="1knn8kw9m232agm4b3b0fc132frv5i7k8gxvmrcb1pnz62gsmg04"; depends=[FrF2 ggplot2 gridExtra jsonlite magrittr miniUI purrr reshape2 rlang rstudioapi scales sfsmisc shiny testthat tibble tidyr]; }; sims = derive2 { name="sims"; version="0.0.3"; sha256="0wsq8plbrmk4xrs8i3g3pqwp2xkhfh1pffva1bwyx44l1r5imzs2"; depends=[chk future_apply nlist yesno]; }; - simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; }; + simsalapar = derive2 { name="simsalapar"; version="1.0-11"; sha256="1vf97q42vicmz5w6szzhiw73sc3c7rqwxs1nv7ybp13fvvg52p24"; depends=[colorspace gridBase sfsmisc]; }; simsem = derive2 { name="simsem"; version="0.5-16"; sha256="0scjb308pb8ivy5blbk1wj9d1yxcqknhvh95a3728crfq2xcqnh0"; depends=[lavaan]; }; simsl = derive2 { name="simsl"; version="0.2.1"; sha256="12dc9lcy11g1yynycvcqm62npq0v13bg6fnykb5m9ijwga4x51il"; depends=[mgcv]; }; simstandard = derive2 { name="simstandard"; version="0.6.3"; sha256="1l1vny3csrr7krfpn25rzysmwjfv6mclf51y3mq02cimcwq9fzcy"; depends=[lavaan magrittr mvtnorm purrr rlang tibble]; }; @@ -16728,7 +16776,7 @@ in with self; { sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; }; sinar = derive2 { name="sinar"; version="0.1.0"; sha256="0dywgqmvbrsygyvnln2mc5p6gaxvphr5byx7hkf0nkil54f2jzdf"; depends=[MASS numDeriv]; }; sindyr = derive2 { name="sindyr"; version="0.2.3"; sha256="0dk7zwj5hdr7fcxhdj9klml11sciyaj0v59dfgvnhhkxndwwdbrr"; depends=[arrangements crqa igraph matrixStats plot3D pracma]; }; - sinew = derive2 { name="sinew"; version="0.3.8"; sha256="1ggx7wgmgnsv69nnc55mg9g7rzjv5m23sygz7x8q68pybmjr7fc1"; depends=[cli crayon miniUI rematch2 rstudioapi shiny sos stringi yaml]; }; + sinew = derive2 { name="sinew"; version="0.4.0"; sha256="14ccm7i3zkjmj077b9ba2557n4v77k7646vylnrd22f20dzr52ba"; depends=[cli crayon rematch2 rstudioapi sos stringi yaml]; }; singcar = derive2 { name="singcar"; version="0.1.3"; sha256="17f80cqkgcyvmaavpqia9z54h3yf5as3v294fsc09l3zshzvbzg6"; depends=[CholWishart MASS withr]; }; singleCellHaystack = derive2 { name="singleCellHaystack"; version="0.3.4"; sha256="08s31z15v4px3sfm2q2ips64qknahw04xhh6d5nmlsl65wbd143x"; depends=[ggplot2 Matrix reshape2]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; @@ -16741,8 +16789,8 @@ in with self; { sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.48"; sha256="1fh35ndra58dryw222ng7ys3gx1izyk5789k30lyd4n8wqy6sjjd"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; sisireg = derive2 { name="sisireg"; version="1.0.0"; sha256="1gijdz5rllflrh7ndjm245ix8ngpqp5nhqjfpqsdyllwixlkchmv"; depends=[raster zoo]; }; - sismonr = derive2 { name="sismonr"; version="2.1.0"; sha256="1v4vfz6zc4f70fay8r9vaxj62pcp8gqnh4aczbqpym9874330vi9"; depends=[dplyr ggplot2 ggpubr igraph jsonlite magrittr rlang scales stringr tictoc tidyr truncnorm XR XRJulia]; }; sistec = derive2 { name="sistec"; version="0.2.0"; sha256="0y43anin9vybiivf3jrxg19i9z4smmhhjvp52gci6icpn839kr8x"; depends=[dplyr openxlsx rlang shiny stringi stringr]; }; + sistmr = derive2 { name="sistmr"; version="0.1.1"; sha256="08kajkb0ypbzcyxs9wv6mdz51r7zj01k2ahskidhlqww80rd407r"; depends=[BlandAltmanLeh dplyr ggbeeswarm ggplot2 ggrepel rlang scales]; }; sitar = derive2 { name="sitar"; version="1.2.0"; sha256="1dwj3xpi89i5pygw1rx38yi4spdis5bfivkjvwa1xnjcamw64ygg"; depends=[dplyr forcats ggplot2 glue magrittr nlme purrr rlang rsample tibble tidyr]; }; siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; @@ -16752,7 +16800,7 @@ in with self; { sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.10"; sha256="1rnwhh271xj8xgvvlpqw9ain56mfz37fvl7f6jq9nzx9jxx95bjd"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; - sjSDM = derive2 { name="sjSDM"; version="1.0.0"; sha256="1jswpi6m0yhq5vf9s6mxg36fi9ig8cs8zbm6yj56khyi3q159lw8"; depends=[abind checkmate cli crayon ggplot2 mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; + sjSDM = derive2 { name="sjSDM"; version="1.0.1"; sha256="0ifr1pz8mcs91k621hiqvs9ianvblh1c8ml30gvb74yhjw6a9p50"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; sjlabelled = derive2 { name="sjlabelled"; version="1.1.8"; sha256="17gskxr43rgbg7syla3b78g2qgksq2kj07iad4139xycqxblxya0"; depends=[insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; @@ -16831,7 +16879,7 @@ in with self; { smog = derive2 { name="smog"; version="2.1.0"; sha256="1mnnvp6crjwwiym16q4hmn9zwna1gblwqjlan4x9zyvgp1j70k26"; depends=[doParallel dplyr foreach ggplot2 magrittr Rcpp RcppArmadillo Rdpack rmarkdown tidyr]; }; smoke = derive2 { name="smoke"; version="2.0.0"; sha256="1jdl5swg66vqryd40rrqpsnkczmsiaf5x6vlfv774vbnrc6q2v2g"; depends=[Rdpack]; }; smoof = derive2 { name="smoof"; version="1.6.0.2"; sha256="14zwrsyhbrwggwiaq8vxps8cgkp6glb14b2cp2ph1ppa0abvlbfq"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; }; - smooth = derive2 { name="smooth"; version="3.1.5"; sha256="0xqb1dj24vwcfnjyfn599y0yfimd4g6d9a7g4bs7wlqfh7zzmd0y"; depends=[greybox MASS nloptr pracma Rcpp RcppArmadillo statmod zoo]; }; + smooth = derive2 { name="smooth"; version="3.1.6"; sha256="0gkzplb5my4xiyf7jwq3cd1hzvjrpjy20zkvx003cxi4qn4vv93c"; depends=[generics greybox MASS nloptr pracma Rcpp RcppArmadillo statmod zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.3"; sha256="0kqj27vsxdiy0fjn0h94lhzw7hjm6qqnzcvhz15iyssl2d2hzxvg"; depends=[survival]; }; smoothROCtime = derive2 { name="smoothROCtime"; version="0.1.0"; sha256="03iihjxb5xdaf74cm9cajqqjli754mdmv5v1y4hla9vv23017ca1"; depends=[ks]; }; @@ -16882,6 +16930,8 @@ in with self; { social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialh = derive2 { name="socialh"; version="0.1.0"; sha256="03ms1plsrs7lhxh4fb2kwrhayly4f53q61czzycjmbfp83fg1xmj"; depends=[data_table dplyr magrittr]; }; socialmixr = derive2 { name="socialmixr"; version="0.1.8"; sha256="0zhinhjv1ablhdyz41a1ii1s3mzqg8f2ns7xcjnlwa9fx364x5a2"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; + socialranking = derive2 { name="socialranking"; version="0.1.0"; sha256="15s7b41z2gd54wp2y5gcfmrrvzjwdddnwhfd72qxhxnjgwnq62v3"; depends=[mathjaxr Rdpack relations rlang sets]; }; + socialrisk = derive2 { name="socialrisk"; version="0.5.0"; sha256="049ambqpq50c20x1z0rjzi77i9n3mq5rbhsvfkwflq61i9j8mai9"; depends=[devtools dplyr magrittr rlang stringr tidyr tidyselect tidyverse]; }; sociome = derive2 { name="sociome"; version="2.1.0"; sha256="0dh20mx3jbyy2bkrdz1w0sihdfhpfvc5p0i0x9q0azcpln51rv5k"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; }; @@ -16889,7 +16939,7 @@ in with self; { sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.6.13"; sha256="1g8bk4pwahhhj809py4k13vb3kbvw04iwy8f17gag2fhi8s58sp0"; depends=[aqp curl data_table DBI raster sp xml2]; }; + soilDB = derive2 { name="soilDB"; version="2.6.14"; sha256="1pgz6vwap5p1wasyqx8k93pwrmgg8n66h4rz6asdfk172fxs0j62"; depends=[aqp curl data_table DBI raster sp xml2]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.3"; sha256="0fcjw6zl6cvk94hyhqqra6xpnrh8s7wr9va4yknlv5rf0km2vgd2"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rgdal rpart soiltexture sp]; }; soilhypfit = derive2 { name="soilhypfit"; version="0.1-5"; sha256="07hk7p2gr8an1r295dyj1hpp23103x9qjpscrhlz917p5nr9ix4d"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soilphysics = derive2 { name="soilphysics"; version="4.1"; sha256="1kq92vq45knfag49yvphpcjwp29g2hp0xayhdq8lr20sis7h1y72"; depends=[boot fields MASS shiny shinydashboard]; }; @@ -16922,7 +16972,7 @@ in with self; { sorocs = derive2 { name="sorocs"; version="0.1.0"; sha256="0gy23rldhnlz6jmf9rdzl4mmfkn5gjcavq2jfcz6dgjafl3v9vgl"; depends=[MASS MCMCpack mvtnorm]; }; sortable = derive2 { name="sortable"; version="0.4.5"; sha256="1ibycrk9n5pcd6dqc02g52m6b9aanmsjnm0dgwb8l20x0hwnfzd3"; depends=[assertthat ellipsis htmltools htmlwidgets jsonlite learnr rlang shiny]; }; sorvi = derive2 { name="sorvi"; version="0.7.26"; sha256="19lfrc4bdiljs437w3a2bpf7abnkv0934dh929bbj2w1w8rzghjn"; depends=[dplyr ggplot2 RColorBrewer reshape2]; }; - sos = derive2 { name="sos"; version="2.1-0"; sha256="14wbq7vkzn4bjx3zpg29vn1n6wz9117rn2lwxi9dj45kzccp7a94"; depends=[brew]; }; + sos = derive2 { name="sos"; version="2.1-4"; sha256="0qa8plmdn4rky4i5gvgm4gny8nfvcd0hql7c5vlpwr4i2x1gid9p"; depends=[brew]; }; sotkanet = derive2 { name="sotkanet"; version="0.9.79"; sha256="1d6g09rf7irk3d8hkm6ahp8zl6lj24jnipwvzr0njx2sqi3fwd4f"; depends=[curl httr jsonlite]; }; sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; @@ -16943,34 +16993,35 @@ in with self; { spData = derive2 { name="spData"; version="2.0.1"; sha256="1z4hp5ivwzyvl8mkp98j2ng1cl1xksqbjxv85vdlqfqjwpia6df6"; depends=[raster sp]; }; spDates = derive2 { name="spDates"; version="1.0"; sha256="0bf9bwi26h26ms0lczk1dld3cwgnx49y6g56sqwrkagn7w6blsrn"; depends=[data_table dplyr gdistance ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; }; + spFW = derive2 { name="spFW"; version="0.1.0"; sha256="1d00a01mnwc7lcnqgz2dfglhwqwhh9vm4yd904zq3s26zv4qapyf"; depends=[Rcpp RcppArmadillo]; }; spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.11"; sha256="06lfc4hk5kn1f1fak0ckpnad0c5b0yxb20cnm0j0hyxpv0qbxhj1"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; - spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; - spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.2.1"; sha256="12fpi7ijk1qlhdq280r352aqlymmkis1nbfjbqqr9kkrl141zi56"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; + spNNGP = derive2 { name="spNNGP"; version="0.1.7"; sha256="05pvjfckwindvaq96b4kmyavfkk93988xcizlqmkp9f3vqvxrr69"; depends=[coda Formula RANN]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.3.0"; sha256="1lk1ipawlxxb4hm4r6zjnzjsdx6v1zhlqk4j77abxsb561517g9b"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.0.1"; sha256="0dhrwnns06jqzqbc5mc7bjgs98xkcq591nm6scayxm34mqs3k47m"; depends=[]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="3.10.0"; sha256="0wlavsaf2k3qxj2n4c9c2y9x110i43yqn4140qk9d0vx397yfvsd"; depends=[boot crayon gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="3.11.3"; sha256="1f3w2rixv6fflbinnjhla48kcggqxq93ljrn14kwzs27bfq08d25"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.0"; sha256="0c4yasc1zizjmhd2ciyz86lg76fsrxvl19yjkb2fmkda9rmnc0bf"; depends=[Rcpp]; }; - spacejamr = derive2 { name="spacejamr"; version="0.2"; sha256="1hyf4wmwfjlw3qh3rw3wq94slybrpm2zmmcfgy7gqcycmfddrg8w"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; + spacejamr = derive2 { name="spacejamr"; version="0.2.1"; sha256="05rprsgnihhz3xhh7p9mkn4scpi318kvrkkrrw9j645d6bwfms5l"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; spacesRGB = derive2 { name="spacesRGB"; version="1.4-0"; sha256="1py93g7wglszcrkm09y0am2iia972q0jbgwb2wmickw3xsgip8p5"; depends=[]; }; - spacesXYZ = derive2 { name="spacesXYZ"; version="1.1-1"; sha256="1jxwhpnfbqa2nz86l8sdxxj3qmasw1wmbii7wr8sqp2819jr5lnd"; depends=[]; }; + spacesXYZ = derive2 { name="spacesXYZ"; version="1.2-1"; sha256="02czblryvr8072q0gbm121cl2x2hir582khxrd2qyv05pv36kz3d"; depends=[]; }; spacetime = derive2 { name="spacetime"; version="1.2-6"; sha256="10fxs37bky52wr3ba4vzwy7nxych9004139n377gz2cmxl36dm4g"; depends=[intervals lattice sp xts zoo]; }; spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; }; spacyr = derive2 { name="spacyr"; version="1.2.1"; sha256="1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.6.0"; sha256="0xigwi6w21y2fwicml0s2gylwnwp2qvrqskr0v8rd3bn01hg9ja3"; depends=[]; }; + spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; spam = derive2 { name="spam"; version="2.8-0"; sha256="1ann2a2ifr3z983fcg1c0pkgmbxz6a0ym5q1dmq1r382bd1pg0fr"; depends=[dotCall64]; }; spam64 = derive2 { name="spam64"; version="2.8-0"; sha256="105h8j1ps2g79csbhwfchfdfxhqbbs793pxk3hqln57p6nap74i6"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.19.0"; sha256="12cnf8s4xzw4qvhc3i10mch2pck9rini5qkvjg19264p4rwh0xpd"; depends=[abind expm fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="1.20.0"; sha256="0bsq3fnhsl9cpvh0z9jv2f3fg2336av12ngc2wisn74bw5r32kwy"; depends=[abind expm fields irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -16999,7 +17050,6 @@ in with self; { sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; - sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; sparsegl = derive2 { name="sparsegl"; version="0.3.0"; sha256="0aiaspl9sybyg7sa9pzmnrbjdvxplsmzip0v5imrmqvjszrkbrf8"; depends=[assertthat dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; @@ -17013,7 +17063,7 @@ in with self; { sparsevar = derive2 { name="sparsevar"; version="0.1.0"; sha256="1kcy6bm04mccky529nryy5l001bv71hx304ysiabl4myakw0rwy7"; depends=[corpcor doParallel ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsevb = derive2 { name="sparsevb"; version="0.1.0"; sha256="1cigq8hwymrrkiy3iyrxsjjbj228ahrd7mq9lqar4jlb925jzqx4"; depends=[glmnet Rcpp RcppArmadillo RcppEnsmallen selectiveInference]; }; sparsio = derive2 { name="sparsio"; version="1.0.1"; sha256="181kzs9x3h497c7shfalbzrjz05bkj7mmjh9nyphxyi2jjrr6y1q"; depends=[Matrix Rcpp]; }; - sparta = derive2 { name="sparta"; version="0.8.3"; sha256="0p5a7h278f7lfikp7rayjzjngich3zi8dhn4an5qkkz1jbl2wic6"; depends=[Rcpp RcppArmadillo]; }; + sparta = derive2 { name="sparta"; version="0.8.3.1"; sha256="1rgg9x2p5qwah1ndfsrxd736igjlj2p2k8fc413zpiix0s66nr16"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.29.0.0"; sha256="1d3k5m2rlpn1hgpjxb9qx4hz3bl96ch8hmc06lj9jd6awdspdvf5"; depends=[abind dplyr foreach magrittr pomp rlang stringr tidyr]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; @@ -17029,30 +17079,30 @@ in with self; { spatialreg = derive2 { name="spatialreg"; version="1.2-1"; sha256="10d0gd21s84r7d5i1h62zavb40ws9c6vikrk8qjii25a66rvch2c"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme sf spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.7.0"; sha256="0mqi8jrz1msk2aaza67vfp9s21f372mhvbivwxy56fxrl7vp975v"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; spatialsample = derive2 { name="spatialsample"; version="0.1.0"; sha256="0w57pl09pamx8mmrwyj2hixxqp9cf0xg06gvsrrg4abjbkj0i1pr"; depends=[dplyr purrr rlang rsample tibble tidyselect vctrs]; }; - spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.2"; sha256="1yng9sxhqm04vliwz4jifqsqhvg1nk0icb6j21kp4cfwz81q2s2a"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; + spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="2.3-3"; sha256="0skk377fw448gvdk6jkcviqbqdjn2vdz19vfk8aiilxax4xba1hr"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; + spatstat = derive2 { name="spatstat"; version="2.3-4"; sha256="1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-1"; sha256="1mxynbk5sclf94fbrf6vicc48hwmdpxhyxylcmpmlqji4nhs97vx"; depends=[Matrix spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.4-0"; sha256="1dx6fh6l3bqxqfaczm9gxx1sirmdpx8biag462pj9wjqmw9m4j35"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_data = derive2 { name="spatstat.data"; version="2.1-2"; sha256="1r8s4xl25xr71h4g5qqi5y370h2ik3kz5fb4qyml2b6dwsl1ildv"; depends=[Matrix spatstat_utils]; }; - spatstat_geom = derive2 { name="spatstat.geom"; version="2.3-2"; sha256="0aihimb4r6hmk3g7764d3b43a0znf9bzmc96i1lkqq9hwabj7151"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.4-2"; sha256="0bhdxyw212yf9y9nsvbz4yy08ka3wr3hkjqpag0ys2s1p22c51b9"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_data = derive2 { name="spatstat.data"; version="2.1-4"; sha256="0bq9randa3lgkh2q932iss5cxazq743q6p8asiqqf0yi32b003jq"; depends=[Matrix spatstat_utils]; }; + spatstat_geom = derive2 { name="spatstat.geom"; version="2.4-0"; sha256="0rwysq9a0ylbsr53q5kfh7wjk5mcdji211sc3s8gwzz8ki09mf1j"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-1"; sha256="1snvy4q0w4yn24n2yxyqvdi70i70zpqa7q13cm38d9135hm35cgk"; depends=[rpanel spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-2"; sha256="0y1py6x0xbw4ad3pjwcspi4ysgfh61f5fd79787zzgyyh2va8y4w"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; - spatstat_local = derive2 { name="spatstat.local"; version="4.1-4"; sha256="07hmjxrq7k3z43l4f0a141alcg787xhqgl8skk405s1g29xzpnyc"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="2.1-0"; sha256="0ggzl64iqf7b6n81ga66wb01sm4rmzrbimv2pmgy047mjnqsnpq4"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; + spatstat_local = derive2 { name="spatstat.local"; version="4.1-5"; sha256="0iq2xppfxp9aa3878z3l4q13qqzn3hg5v7cfv8z8m1mzmnw1r1y8"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_random = derive2 { name="spatstat.random"; version="2.2-0"; sha256="0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="2.1-0"; sha256="148fxbxss569w73xaqpzwpz9rfjdgznh2ngf06gvm33631222680"; depends=[abind Matrix spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="2.3-0"; sha256="06nvn2ffyrskhzaavsy6lmdp0m8askkrp1fnwrhjsj01lbjnq2az"; depends=[]; }; spatsurv = derive2 { name="spatsurv"; version="1.7"; sha256="01666mp43p0cv0hsn3wbv5vbb4gyjk506spff9ps119bcpqnwqjr"; depends=[fields iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.5"; sha256="0yfkz28nfvl3rm0bxljb3y19zhnx7pabxy81d835pbfmjq5vvp51"; depends=[dplyr rlang sp tibble]; }; - spc = derive2 { name="spc"; version="0.6.5"; sha256="1s9f67m3a52mzk5s6hh9jv80m721s0z43x2qj2d4ski2jwqw0iyr"; depends=[]; }; + spc = derive2 { name="spc"; version="0.6.6"; sha256="0crgbpxf3sqbw48fs8fji4z7dd1sc9nkwxm4frf7rgx3aix71cxk"; depends=[]; }; spc4sts = derive2 { name="spc4sts"; version="0.5.5"; sha256="14398a65fpdjlr39lwivin551m31mcr5hx47fx2dx7sklq8kr2bg"; depends=[gridExtra LS2Wstat rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.4-0"; sha256="0aszpwhf4ww6kb7r75i17kf6mqy9cx021b0w5dzd6185p57g6sxv"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.1"; sha256="08lpcj49sj0bc2vz54wigdb9dqn182c11q31n3sdkc41spgk0s7a"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.2-2"; sha256="08sya6vy7s87h337g2fanncw6xx9y9z8nxpqalbdxv9vpsc6zx4l"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdep = derive2 { name="spdep"; version="1.2-3"; sha256="0qd7qjblx49gp07pcf4qb2f93ab3p126pa77g6mq4z3jaa510hak"; depends=[boot deldir e1071 s2 sf sp spData units]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -17063,24 +17113,22 @@ in with self; { spec = derive2 { name="spec"; version="0.1.7"; sha256="0zgs9yki11wysvjnx88gl8iv0mcsbrasg29sbasp0855x5l8cg8k"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; specklestar = derive2 { name="specklestar"; version="0.0.1.7"; sha256="04vm989yi31vqnf5rs6cdyikm4jzfd9njxh0ls3dvjrg19ipsnmn"; depends=[Rcpp]; }; - specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; }; - specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; }; specr = derive2 { name="specr"; version="0.2.1"; sha256="17bc7f644g40zsfxv3sw542piqgg09w3m3q14jgrifc8sw0ljvdf"; depends=[broom cowplot dplyr ggplot2 ggraph glue igraph lme4 magrittr purrr rlang tibble tidyr]; }; specs = derive2 { name="specs"; version="0.1.1"; sha256="0x5s7aikj5x1dgxygizh2mcni74hy6dm7084h1pqqbh5ans00c6n"; depends=[Rcpp RcppArmadillo]; }; spectacles = derive2 { name="spectacles"; version="0.5-3"; sha256="0fwj4407dwpvbjhjqwfxb455698ifyramwyddw4jrzgaf11vc4ii"; depends=[baseline epiR ggplot2 plyr reshape2 signal stringr]; }; - spectator = derive2 { name="spectator"; version="0.1.0"; sha256="1s18yzqmh67c3xdsi2vw9fl8p3nkgdf5xfkkf0f8ljqvhn19v3rm"; depends=[geojsonsf httr sf]; }; + spectator = derive2 { name="spectator"; version="0.1.1"; sha256="0c3rk4nh3fdk49mazsbzqdq0wa0pznib567b0h915hv5i8kdsl5q"; depends=[geojsonsf httr sf]; }; spectr = derive2 { name="spectr"; version="1.0.1"; sha256="1jbadg9n42qrbw1v6hqrdp5pzy2nn1kvqi4xscxdxvc6c33i7zr4"; depends=[data_table foreach lomb]; }; spectral = derive2 { name="spectral"; version="2.0"; sha256="116gn41nvlw7jmr6qx9pl8hckg2pzgzx49kql52j5xqf39sgyx9p"; depends=[lattice pbapply rasterImage RhpcBLASctl]; }; spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; }; spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; }; - spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.0"; sha256="02j374zsz4ba8ldy52x43rih1p77b56cv5xlbycj5wmkzny2gzx1"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; + spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.3"; sha256="09nsszm2f6q8kz84kn7ihhb627q186jwpvr6fm633l8app4ilf2x"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; spectre = derive2 { name="spectre"; version="1.0.2"; sha256="1n5z7970pzhavdf7qhxsb7gzz8dsrwa1pwyxf8n6sxvmdbk8v2z1"; depends=[ggplot2 Rcpp RcppProgress testthat]; }; spectrolab = derive2 { name="spectrolab"; version="0.0.16"; sha256="0qfzkf8dm5r5sbadipcqvfs1965l365g9000rgl9713v9lmshmy6"; depends=[RColorBrewer shiny shinyjs]; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; - speechbr = derive2 { name="speechbr"; version="1.0.0"; sha256="0nifv74rh4qla3cd92bnjn77n39fyxvxb4hlix3lk096c0qxgp7s"; depends=[abjutils dplyr glue httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; + speechbr = derive2 { name="speechbr"; version="2.0.0"; sha256="0jf0zj64hm1zxbpcry1iff3nddf2wl315whzcbzj8936qfam92p5"; depends=[abjutils dplyr glue httptest httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; speedglm = derive2 { name="speedglm"; version="0.3-4"; sha256="1kj662nfkfhvx37jrbvxd4dyjclz5cm3xh50z7s5rbzapiyxn4hs"; depends=[MASS Matrix]; }; - speedycode = derive2 { name="speedycode"; version="0.2.0"; sha256="1fz8a6z77r17rld1qqiq3hsk65fpjz8f6czcfqsc8y2fxm0jy602"; depends=[dplyr purrr stringr]; }; + speedycode = derive2 { name="speedycode"; version="0.3.0"; sha256="0k9pnrmv5zmiyia1js3va2gx7nwbg2b35jl4r1lm2hwl3c901jfw"; depends=[dplyr purrr stringr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; @@ -17089,13 +17137,13 @@ in with self; { sperich = derive2 { name="sperich"; version="1.5-8"; sha256="0v4mnv9nl0dvmmfx10w03k02pwjjnip9526m3j1kpgn6c4wk1h93"; depends=[foreach rgdal sp]; }; sperrorest = derive2 { name="sperrorest"; version="3.0.4"; sha256="169bv07vwlbn2ihw0f8hx10qrfdww9lqb2j8wgrkh1xnkskz13hv"; depends=[dplyr future future_apply ROCR stringr]; }; spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; - spfda = derive2 { name="spfda"; version="0.9.0"; sha256="156vs1f75x0wbf65fwzkhlbda649sryf58xixi7gbfjzn873w111"; depends=[mathjaxr]; }; + spfda = derive2 { name="spfda"; version="0.9.1"; sha256="094j68gyy5yw7d2mn3n864h6vf8nd76x9ypfzc1liggnw7qs0fdl"; depends=[mathjaxr]; }; spfilteR = derive2 { name="spfilteR"; version="1.1.4"; sha256="0cxc7zrzwr07wk7yv26li6fwmbv3q57vdamzalfrj1npszzkg1s7"; depends=[]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; spgs = derive2 { name="spgs"; version="1.0-3"; sha256="0a7zqih8q4imi49in8d2j9wa82savp7d2g4xy4wlwblwf6f2ggsh"; depends=[]; }; - spgwr = derive2 { name="spgwr"; version="0.6-34"; sha256="1zmd7zp1h98y0xnxacym29b8kcp79yrsss1c49b5rfnml9ksdaqx"; depends=[sp spData]; }; + spgwr = derive2 { name="spgwr"; version="0.6-35"; sha256="0kcamk33qm3irrp3i7lggxgzk8ldl415a905lxvapv2zaa0cfb2w"; depends=[sp spData]; }; spherepc = derive2 { name="spherepc"; version="0.1.7"; sha256="0y05ylyxzawgjlivaxs513mfjjfmw6fm98b83sq76n8yw56pr9ny"; depends=[geosphere rgl sphereplot]; }; sphereplot = derive2 { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="2.0"; sha256="1qr4n4kbmc58qmr8niqq3mnwv18x9q2f24c1kg67asf7n3pnmy77"; depends=[coda Matrix mvtnorm nlme sf sp spatialreg spData spdep stringr]; }; @@ -17109,13 +17157,14 @@ in with self; { spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; spinBayes = derive2 { name="spinBayes"; version="0.1.0"; sha256="1qgqxxk4n17wj3q07irm2qj6lwc5188iwwbdkf588hvfy86lwpj8"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; spind = derive2 { name="spind"; version="2.2.1"; sha256="1yasqy086h4dv348krisc024mic0dvdsncqys95l85924djlfipp"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; }; - spinifex = derive2 { name="spinifex"; version="0.3.5"; sha256="08sj1crngk28d9b1qayxffwgg16imcqk8mpnp7fsjfrjih68a7sw"; depends=[gganimate ggplot2 magrittr plotly Rdimtools shiny tourr transformr]; }; + spinifex = derive2 { name="spinifex"; version="0.3.6"; sha256="09agdcvdq6cmg7nvr1p9njvixnqmn134wn6kc9v7hiqpiy8s7ldx"; depends=[gganimate ggplot2 magrittr plotly Rdimtools shiny tourr transformr]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.5"; sha256="0m0809b34l8mp0czpcq144hw5p10g35lsb8z7l8ls2kclb8xjcs8"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; splancs = derive2 { name="splancs"; version="2.01-42"; sha256="1aph5rns5kzad1vc6y7khs3y8ysf51fgssmskmi0pqi18mvg82lc"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.1"; sha256="0f5ap8gi1nqxq8qbi3dz52hlizln1wxfrx5k06bagvxh8za8a08v"; depends=[]; }; splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; }; + spldv = derive2 { name="spldv"; version="0.1.0"; sha256="061qs6kqd41kfby2x2kj019plhlk82pf5lah4zyjpn74kaalg7ax"; depends=[car Formula MASS Matrix maxLik memisc numDeriv sphet]; }; splines2 = derive2 { name="splines2"; version="0.4.5"; sha256="0vgwgrkrkl2j6pcr98gylm3q60aiqdj9n9ndpj6szzn3ygjr0j9q"; depends=[Rcpp RcppArmadillo]; }; splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; @@ -17134,8 +17183,9 @@ in with self; { splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.2"; sha256="0z064svaggqajqv8bni4763llkhm2s3s45krvs4w8k8all0h7rxa"; depends=[splusTimeDate]; }; spm = derive2 { name="spm"; version="1.2.1"; sha256="0gr6dc5xcz4y84iibkfi3gi84yij5vvazi1yrwd54jblf3fx32jr"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; - spm2 = derive2 { name="spm2"; version="1.1.0"; sha256="0aw6b4j0b452hf3vi47id3r4qnmngzzfa9cdh09rammj3mvmqb4i"; depends=[e1071 gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; + spm2 = derive2 { name="spm2"; version="1.1.2"; sha256="1cf5j5gi4h8v5sjlbj279h5la8nscn3n3p3prmci9258593xgkjq"; depends=[e1071 fields gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; spmoran = derive2 { name="spmoran"; version="0.2.2.2"; sha256="1qfv6h3d7wgg3dwdq0vfhi7134y4qywkac4njxgmaic7cx0hifqi"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; + spnaf = derive2 { name="spnaf"; version="0.1.0"; sha256="1iqbyvcgxq6m189mzajd0l1p489cplf7k9v7apv4cj929jqxvvkg"; depends=[dplyr magrittr rmarkdown sf spdep tidyr tmap]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; spocc = derive2 { name="spocc"; version="1.2.0"; sha256="114xlwd9200ysgkcwxgjc5awj50j4k4v1lgbdjzs7gv9bvdlbb2b"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble wellknown whisker]; }; @@ -17151,10 +17201,10 @@ in with self; { spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; - spqdep = derive2 { name="spqdep"; version="0.1.0"; sha256="00scaafr0r8a0qf5nirv0gi6wsjlz6kk6nmb3rk5fd3x5k9p6ck1"; depends=[bookdown broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rsample sf sp spatialreg spdep tidyr]; }; + spqdep = derive2 { name="spqdep"; version="0.1.2"; sha256="0q2sp76kgrmw2w033m9i69vx0shziazr31akjmighcy1pdz3b695"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; }; spray = derive2 { name="spray"; version="1.0-19"; sha256="1x9zn1hw7ndl28c49bka1bqay9wrjvc66d3bs7v7bj53zqmgkac3"; depends=[disordR magic mathjaxr partitions Rcpp]; }; spreadr = derive2 { name="spreadr"; version="0.2.0"; sha256="180dvr39i1glc0jllsnnglwrxh133q20v7px2fmdi7229pr175id"; depends=[assertthat extrafont ggplot2 igraph Matrix Rcpp]; }; - spreval = derive2 { name="spreval"; version="1.0.0"; sha256="0949ms3d2r94vbsqyfma4vfavf0gdq58xs7nkirgrfxjd1a65vfm"; depends=[interp timeDate]; }; + spreval = derive2 { name="spreval"; version="1.1.0"; sha256="1zapfld0d6yyxqvijkb243zqin9xwqhmnznd2nnd4cp0rq3106zf"; depends=[interp timeDate]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; springer = derive2 { name="springer"; version="0.1.5"; sha256="197zmn90zrqv9g0kzwnzs14g1sh3cx2hnp5x92dfp96xcb650dz1"; depends=[MASS Rcpp RcppArmadillo]; }; springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; @@ -17186,7 +17236,7 @@ in with self; { squant = derive2 { name="squant"; version="1.1.4"; sha256="1z4qi1svv6186gj3nh4z3hvjd54i7grj6ckgdyk4dmyn7zh8fw5w"; depends=[ggplot2 glmnet survival]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; squashinformr = derive2 { name="squashinformr"; version="0.2.5"; sha256="1403h52il9kyf16cm44lvib8sgdq0njrqsci8ng5ngryg2h2lacc"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; - squeezy = derive2 { name="squeezy"; version="1.0"; sha256="0ihlgdnfissi0kaw7gwiihrp7kw5447kbwnb7rb1l2jacs60v41n"; depends=[glmnet Matrix multiridge mvtnorm]; }; + squeezy = derive2 { name="squeezy"; version="1.1"; sha256="1xj3jvyb6k09z6p4ifpf9zp3ngbr36qwxi16iz3jgldkhaw9a0wy"; depends=[glmnet Matrix multiridge mvtnorm]; }; squid = derive2 { name="squid"; version="0.2.1"; sha256="1zpm787ifzrhww32ghi57ii37p9dssq7q7gbai9iqass78z90y2j"; depends=[arm brms data_table ggplot2 lme4 MASS plotly shiny shinyMatrix]; }; sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; @@ -17203,7 +17253,7 @@ in with self; { sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; ssddata = derive2 { name="ssddata"; version="1.0.0"; sha256="0njcnjcgdghwrbjcbiq4yfn7nq9h4dvylrqh57c6vx35yqc4g375"; depends=[chk dplyr Rdpack]; }; - ssdtools = derive2 { name="ssdtools"; version="0.3.7"; sha256="1mxkbf7skxg073nmy195c78fh8mimxnycnlx921y3pb9vrplsn2a"; depends=[abind actuar chk fitdistrplus ggplot2 lifecycle Rcpp scales tibble VGAM]; }; + ssdtools = derive2 { name="ssdtools"; version="1.0.0"; sha256="0ndndfmqczm2bghaymflgmr57rqqvwnj18v7r6vv5czafh391nbh"; depends=[abind chk doFuture foreach furrr generics ggplot2 goftest lifecycle plyr purrr Rcpp scales ssddata stringr tibble TMB universals VGAM]; }; sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.2"; sha256="14v10lbv3wlrnz3b2i8i56rj5rr257qvwa8w9j6xqswllb80132r"; depends=[Matrix maxLik sp spatialreg spdep]; }; @@ -17231,13 +17281,13 @@ in with self; { st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.5"; sha256="1nlb2d8a11kxiipv96sfmmcq185051vmdiwjjqayln143gvhzp7w"; depends=[foreach forecast Matrix quantreg SparseM]; }; sta = derive2 { name="sta"; version="0.1.5"; sha256="0q9pplx4ifndvbh2bfa96vjbcaaqdj6bq57kwlzhavq6hjq7d56v"; depends=[doParallel foreach geoTS iterators mapview raster RColorBrewer rgdal trend]; }; - staRdom = derive2 { name="staRdom"; version="1.1.23"; sha256="0gsix1dxk4gn2iq0zqbm7fyzxxnyzbgdlcbk11lqirx9x0xmwj80"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr viridisLite zoo]; }; - stabiliser = derive2 { name="stabiliser"; version="0.1.2"; sha256="0vpmq1g4vmg02nydkg4q6li00zwvxwm0bad0prhn4kfnlzhkk864"; depends=[bigstep broom caret dplyr ggplot2 glmnet knitr ncvreg purrr rsample stringr tibble tidyr]; }; + staRdom = derive2 { name="staRdom"; version="1.1.25"; sha256="0cxcl9crw9cvbfzjwwqmxbcsq4q5zbwkb5warkkga6250nra0vkc"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr viridisLite zoo]; }; + stabiliser = derive2 { name="stabiliser"; version="1.0.1"; sha256="1cikls4ynwrzhkfvy85kb6yqns8h5f166ylh30y91lkfay39jank"; depends=[bigstep broom caret dplyr ggplot2 glmnet knitr ncvreg purrr rsample stringr tibble tidyr]; }; stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; stable = derive2 { name="stable"; version="1.1.6"; sha256="194xsa291v5f0jya1c3aigbclg8cci427ffpb8brxamm6n57hf12"; depends=[rmutil]; }; stableGR = derive2 { name="stableGR"; version="1.1"; sha256="1fbbghqkd6vpnlnzgc6fsdpvlc7lw6nxwy5whdg7zgxkwqvqj8n3"; depends=[mcmcse mvtnorm]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; - stablelearner = derive2 { name="stablelearner"; version="0.1-3"; sha256="0h2xqm9g4zx72r6r0a7if1kyrqrjr8hs1pi07h294hbg8l7yvhxb"; depends=[e1071 MASS party partykit randomForest ranger]; }; + stablelearner = derive2 { name="stablelearner"; version="0.1-4"; sha256="0w0b0h25lzdmzly5q8z6fhk8cz24k9radjika857qczmy7vdafd0"; depends=[e1071 MASS party partykit randomForest ranger]; }; stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabm = derive2 { name="stabm"; version="1.2.1"; sha256="0x8dbafwfpi3r5rzqn34257g9vz4b01gijxvvfch1dn13pm4vcmr"; depends=[checkmate Matrix]; }; stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; @@ -17249,7 +17299,7 @@ in with self; { stagedtrees = derive2 { name="stagedtrees"; version="2.2.0"; sha256="01qb8pw0al3b3b6smcapd61i81p6xw3hh1x8i6dsb73pdvpbfyxj"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; - stan4bart = derive2 { name="stan4bart"; version="0.0-2"; sha256="0262z83rqwf38z2qrvngdz6wmnrz48w4ijv7wg81w1b1lp807y5s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; + stan4bart = derive2 { name="stan4bart"; version="0.0-3"; sha256="1zg008h391fxwqjbq2g41ma0cq1p867xr7gcli7mhw5i4qlkk20d"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standartox = derive2 { name="standartox"; version="0.0.1"; sha256="1b5w66x4v8hfxzp3ahw97my6m0rcn22iv5nhgm2wzdq0if0cq8py"; depends=[curl data_table fst httr jsonlite]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; @@ -17270,6 +17320,7 @@ in with self; { starvz = derive2 { name="starvz"; version="0.7.1"; sha256="0j22605vh0fpf17l78i3x9q5xia9qx841sg7hxhcjybn7vfkafsj"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; stat_extend = derive2 { name="stat.extend"; version="0.2.1"; sha256="1qwjqnjds733xvxhby604yqvwlj1rkr3411diwzhbgwp89rhy11r"; depends=[sets]; }; + statBasics = derive2 { name="statBasics"; version="0.1.0"; sha256="0s5ywkzfj54hfvd7pyhgjgf1vgj7crbqsmjix6rzj2iy4431q6zh"; depends=[stringr tibble]; }; statGraph = derive2 { name="statGraph"; version="0.5.0"; sha256="0fd7jsngd8gihivnir3y58961kvbdd5g1m5gm1da91984qs7r9q1"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; statVisual = derive2 { name="statVisual"; version="1.2.1"; sha256="1cc9p9g8lzn0lgh793r977yhqbk89l74m443gnznjlfml69bfb21"; depends=[Biobase dplyr factoextra forestplot gbm GGally ggdendro ggfortify ggplot2 ggrepel glmnet gridExtra knitr limma magrittr pheatmap pROC pvca randomForest RColorBrewer reshape2 rmarkdown rpart_plot tibble tidyverse]; }; statar = derive2 { name="statar"; version="0.7.3"; sha256="17zg1g0ndsysrqj0alpx0sgmc69d3jkqr543l8m758mnm9bw83c9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyselect]; }; @@ -17283,6 +17334,7 @@ in with self; { statgenGxE = derive2 { name="statgenGxE"; version="1.0.4"; sha256="12v9a1lg12pmhzk28c929j1vhhh5x9gzb6ia9izvji2zjx2yigk4"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.5"; sha256="1lclxc4al3h7z5cbjhmm6p1hr22gysz16hlvfams37czbc2prlha"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra locfit lubridate reshape2 scales SpATS]; }; statgenIBD = derive2 { name="statgenIBD"; version="1.0.4"; sha256="1hjixzzxwvi6a9dz8n3xrz1zy9r7wzf54gp9m76pfbdnhjga3hgk"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + statgenMPP = derive2 { name="statgenMPP"; version="1.0.0"; sha256="0rnlskn7xjd4sx2yg7fxr9vi09wbkz93dlvn67p5vp8a7ai5vca9"; depends=[data_table ggplot2 gridExtra LMMsolver scales statgenGWAS statgenIBD]; }; statgenSTA = derive2 { name="statgenSTA"; version="1.0.8"; sha256="1734gqcrwkxl3672pf147qh5n8lid4zk81zfanhqi6z83syw5ha5"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; @@ -17297,10 +17349,10 @@ in with self; { statpsych = derive2 { name="statpsych"; version="1.0.0"; sha256="0rakzsbafhp5xps9bbb4pljv4c49ij1rwz64z0q5jjglc95kw55s"; depends=[mathjaxr Rdpack]; }; statquotes = derive2 { name="statquotes"; version="0.2.6"; sha256="04pk4fqq6hjpn15f2xp7hy25vhw5z1qj3v79sq6smzak1vz92zsa"; depends=[stringr tidytext wordcloud]; }; stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; - statsExpressions = derive2 { name="statsExpressions"; version="1.3.0"; sha256="0kml7q4nhnirh8na12mfqgg0ka4vl2333piabw94hx4rjhajwxll"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; + statsExpressions = derive2 { name="statsExpressions"; version="1.3.1"; sha256="1w13gvd18cgwv886r8h9zp21a5vvlq6g0sqr4frcnw1i14j54a00"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; statsr = derive2 { name="statsr"; version="0.3.0"; sha256="138yjifz8q3dqcm3wbzn4sxdydwnqvwkz0h20r8ls3pijqh6fc2y"; depends=[BayesFactor broom cubature dplyr ggplot2 gridExtra knitr rmarkdown shiny tibble tidyr]; }; - statswalesr = derive2 { name="statswalesr"; version="0.1.4"; sha256="1q1825aiaq5mfcfdw8fy22w738cn0x2ifij7p3p276x0sl1cbrdm"; depends=[curl dplyr httr jsonlite rlang]; }; + statswalesr = derive2 { name="statswalesr"; version="0.2.0"; sha256="03h0gq8ag51my5z8mw78rhbkksfpa7af8my6lb468wrcfv69k0gl"; depends=[curl dplyr httr jsonlite rlang]; }; stcos = derive2 { name="stcos"; version="0.3.0"; sha256="0niy8inajs0vafbh47w5rajlp3bvgi9yakhyabjdrqhkjzs79lpx"; depends=[dplyr Matrix Rcpp RcppArmadillo sf]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; stdReg = derive2 { name="stdReg"; version="3.4.1"; sha256="0x4awgbja70mdpbavgkg9mpnrxxc0qpsnl8i3rj9hs4vwbdkalr8"; depends=[data_table drgee numDeriv survival]; }; @@ -17314,15 +17366,16 @@ in with self; { stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; - stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.0"; sha256="0glsc11ylh4bqhw0p8sdf6r171lzb522skcnfg9vwxn4sm9s93zm"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; + stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.1"; sha256="1xp9xrshb1fa76vjk970a0wss3zpsggb4skqklqa7zq87wcq4ly2"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; + stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.0"; sha256="1psjnxc7dadbm1405wm3vgsf9m2pn8bm82rn9md3cxhp33jqh1bx"; depends=[gbm spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepp = derive2 { name="stepp"; version="3.2.2"; sha256="1iyj1f9gzn44xllhm9y1j0ynfz4q48d2l8ic4mjvzc3p4z8cnpmz"; depends=[car rstudioapi scales survival]; }; steprf = derive2 { name="steprf"; version="1.0.0"; sha256="0v3bh8rc5pxwfv9dfpv4fmi816fayhjca14wz30b54d3zjvbjxqk"; depends=[psy randomForest spm spm2]; }; steps = derive2 { name="steps"; version="1.2.1"; sha256="04n5m7a5yp3karhiwgcl6fzfp85iad2xymdwp1kyqbagx2acyrka"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; - stevedata = derive2 { name="stevedata"; version="0.6.0"; sha256="1xhgj4g40qpj32n0n6ls5vs6ynl8ns54k1nrynd67gisdk236aq8"; depends=[]; }; + stevedata = derive2 { name="stevedata"; version="0.7.0"; sha256="1shi1abzf4vkz790f6b4720g28hh6kzsi40mdw7gp9xwr97a1dyz"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; - stevemisc = derive2 { name="stevemisc"; version="1.3.0"; sha256="0dkmq6510r36pihj2g8c4iya5j3sbsnq9gp5i72dqj9fwsx242ca"; depends=[arm broom_mixed dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; + stevemisc = derive2 { name="stevemisc"; version="1.4.0"; sha256="009fl8j1wmi4r907bimha3is0vpicn6rcfdzajnvm98rwrx9cp55"; depends=[arm bib2df dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.7.0"; sha256="1cbxh71c7ffxb22zs5yb33h62ipmnp2a9x2i6sdlhix6vr358705"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.8"; sha256="0js09v04ik5m3d9iz9waq0yigvg2g6n75m4zm5dc0nz3yr1irb88"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; @@ -17348,7 +17401,7 @@ in with self; { stochvol = derive2 { name="stochvol"; version="3.2.0"; sha256="1ix8x3gmm5advdxk0rd0p26x3487qmw6pv4mi628vjqpmvnv42fr"; depends=[coda Rcpp RcppArmadillo]; }; stochvolTMB = derive2 { name="stochvolTMB"; version="0.2.0"; sha256="07m3qz8j1sw37lrxzmbkbifd3nsdvd2blbca8vr1aq5bbafr1g1b"; depends=[data_table ggplot2 MASS RcppEigen sn TMB]; }; stockR = derive2 { name="stockR"; version="1.0.74"; sha256="002i0bhyskwyjjczfa752ghn19hvqhdyzdfkpvci3hb66rh94x65"; depends=[gtools RColorBrewer]; }; - stockfish = derive2 { name="stockfish"; version="0.1.3"; sha256="0f98xi81kjahvqhmq7hjbrg54kdff5j4q2dq8wj41l13pzi81sac"; depends=[processx R6]; }; + stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; stokes = derive2 { name="stokes"; version="1.1-1"; sha256="1hykdsmslvwbhm75k7q1l2xmr0dhldvq08np64gm8rgbfy4p4vpg"; depends=[disordR mathjaxr partitions permutations spray]; }; @@ -17358,16 +17411,18 @@ in with self; { stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; stplanr = derive2 { name="stplanr"; version="0.8.7"; sha256="11a0cak6vf5snfpbbv0rbhcjryyd694d6vz1gyshxzwi6wgglhq0"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + stpp = derive2 { name="stpp"; version="2.0-6"; sha256="0ii799kqn8ydgi4bqs292fff7my5fdbrvwnizqphbk7k8xf4w5vx"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom spatstat_random splancs]; }; + stppSim = derive2 { name="stppSim"; version="1.2.3"; sha256="188vdx21sbss5v9941f03n93am3qq6mavq51vwshcm5ncdddhmmg"; depends=[chron cowplot data_table dplyr geosphere ggplot2 gstat ks leaflet lubridate magrittr raster rgdal sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; stratEst = derive2 { name="stratEst"; version="1.1.4"; sha256="1g764h17sh499p0a5ixs61q8l1hssvi7v4c34i90rdf81l72i0mg"; depends=[Rcpp RcppArmadillo]; }; stratallo = derive2 { name="stratallo"; version="0.1.0"; sha256="0i8vqhf70x25p9z8amka2aaij7r28d83sp0nijim4n225bdfj6sk"; depends=[]; }; - stratamatch = derive2 { name="stratamatch"; version="0.1.8"; sha256="04shi4qyzqa2xpmwv8jr273575sdn0jkirilqvdj1hhxkb212zks"; depends=[dplyr Hmisc magrittr rlang survival]; }; + stratamatch = derive2 { name="stratamatch"; version="0.1.9"; sha256="1z395355kac0wd4f0m1ijh851m046ra8h1wam04if4qp00ychajp"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; - stratification = derive2 { name="stratification"; version="2.2-6"; sha256="1jlks3g8wpqlpci6v0ryyv93agiabdiklmk6ij0pc5icrfiynbhw"; depends=[]; }; + stratification = derive2 { name="stratification"; version="2.2-7"; sha256="0vsra08lbq2nabd9lizakgpvn5lrp0lc961jvpns59l0b4wvdqab"; depends=[]; }; stratifyR = derive2 { name="stratifyR"; version="1.0-3"; sha256="1kbpsyhx081rqr7q7gyjw377zlvvravsslpnykl2d16nap0rg0sq"; depends=[actuar fitdistrplus mc2d triangle zipfR]; }; stratvns = derive2 { name="stratvns"; version="1.1"; sha256="01s3p9mml04pqfd7fydkmqdk0qf5jmzz3b3q3x5vavlma6fv8nwi"; depends=[MultAlloc partitions purrr]; }; straweib = derive2 { name="straweib"; version="1.1"; sha256="0hi59p580yg6rj72grq4jx6grv7lmpi2cimp0rbxhkjpj6i1hav9"; depends=[]; }; @@ -17403,7 +17458,7 @@ in with self; { stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; - styler = derive2 { name="styler"; version="1.6.2"; sha256="0p7p2mh4f469drfn5z4wc4xrg06mpnm9wkw76fghclf8m9vcqbx6"; depends=[backports cli glue magrittr purrr R_cache rematch2 rlang rprojroot tibble withr xfun]; }; + styler = derive2 { name="styler"; version="1.7.0"; sha256="1ki260ga0jrmayhdlx2sl788yp5kkmi4wyl32nmvvyb55sng6j9y"; depends=[cli magrittr purrr R_cache rematch2 rlang rprojroot tibble withr]; }; stylest = derive2 { name="stylest"; version="0.2.0"; sha256="1c036zsn1gi5vhsz37p56wz1bcr3pwdp2k62j7ikmrrnkcv2w9kz"; depends=[corpus Matrix]; }; stylo = derive2 { name="stylo"; version="0.7.4"; sha256="0vjfpz4bpdrsax7a0gsj9cwddbsayb4n5fr5xskz63lfrjg2ppcb"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; }; suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; }; @@ -17412,7 +17467,6 @@ in with self; { subformula = derive2 { name="subformula"; version="0.1.0"; sha256="0nsl0nzj79z6aib12b5qijyab0yxlljfssiq9p8xgcgbxy4a7syy"; depends=[]; }; subgroup = derive2 { name="subgroup"; version="1.1"; sha256="1n3qw7vih1rngmp4fwjbs050ngby840frj28i8x7d7aa52ha2syf"; depends=[]; }; subgxe = derive2 { name="subgxe"; version="0.9.0"; sha256="0faww87ncylqixb640hc2axvn4i50d2r2ggngmd7s9wazbb6sd55"; depends=[]; }; - sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; }; submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; subniche = derive2 { name="subniche"; version="1.4"; sha256="10j7wz4hyqvpi7iqq7m6jb13g0wr7k59rkxyyhfkmcq1vgm2cpdx"; depends=[ade4 polyclip siar wordcloud]; }; subplex = derive2 { name="subplex"; version="1.7"; sha256="11zqzydbj6ivgvlw1gv1r2yxra7misbc622g575p2vckhjjg9v6m"; depends=[]; }; @@ -17422,6 +17476,7 @@ in with self; { subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subsemble = derive2 { name="subsemble"; version="0.1.0"; sha256="125msb0krcdj6jbdvzdl75179ajakb1l0xal45bp38am8w62a6zz"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; + subtee = derive2 { name="subtee"; version="1.0.1"; sha256="090k3p1j9fj7qk121qb488vzfgzxnvqp7z60jhcyy8l47aazf5g0"; depends=[ggplot2 httr MASS matrixStats survival]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudachir = derive2 { name="sudachir"; version="0.1.0"; sha256="09ry00c3yhrz8fiyxdxgj9r3x7kldsl6fv35mmi5ysc2549kbcfb"; depends=[cli dplyr glue magrittr purrr reticulate rlang tibble tidyselect]; }; suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; @@ -17429,8 +17484,8 @@ in with self; { sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; - sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.3"; sha256="191jb3jc0k6ja12955w7r6s0hl6wmwvax9knrb1hd2i5wxaq556i"; depends=[GBJ Matrix seqminer]; }; - sumR = derive2 { name="sumR"; version="0.4.4"; sha256="1cpb59yml038ki2kga3hc1fi4l2d1qa0h0kw0f1bq4vjhjab7wf2"; depends=[matrixStats]; }; + sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.4"; sha256="1yaqjsbijnlm7k9ylikwvfrhhdsd3465k4mhr9kq7yr98g2dlq85"; depends=[GBJ Matrix seqminer]; }; + sumR = derive2 { name="sumR"; version="0.4.6"; sha256="1wj5w4kyfpqss2mvxlmpyqyh1l4v5zg6c1x2k6lkhr29qi97lf99"; depends=[matrixStats]; }; sumSome = derive2 { name="sumSome"; version="1.1.0"; sha256="1a70kxvp9d9hn38jnvgk934vwbz4bjb6k4kcngp6rp9gv9h2bh2r"; depends=[ARIbrain pARI Rcpp RNifti]; }; summariser = derive2 { name="summariser"; version="2.3.0"; sha256="0zliqy8dlcr2yy4ky8k68qn256xvpla8fcv7via19y40bmla37ic"; depends=[dplyr]; }; summarytools = derive2 { name="summarytools"; version="1.0.0"; sha256="04qcysfywljnqkcz2b7kzpy0xv3ykkvvb14vnda63z1wvmadyhkn"; depends=[base64enc checkmate dplyr htmltools lubridate magick matrixStats pander pryr rapportools tibble tidyr]; }; @@ -17480,7 +17535,7 @@ in with self; { survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMS = derive2 { name="survMS"; version="0.0.1"; sha256="0313pwf0l6wq9l4qjj1al9ybzm79kdxwzdrw6k0af706rxfzzha0"; depends=[ggplot2]; }; - survMisc = derive2 { name="survMisc"; version="0.5.5"; sha256="00nvvl8gz4477ab24rd0xvfksm8msv8h021b9ld5c9cizc41n2bm"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; + survMisc = derive2 { name="survMisc"; version="0.5.6"; sha256="014cf7sfndmib9jmj0p3h67sr750k2pvw7m865zwdpvlqddi44fr"; depends=[data_table ggplot2 gridExtra km_ci KMsurv knitr survival xtable zoo]; }; survParamSim = derive2 { name="survParamSim"; version="0.1.5"; sha256="0jk4dwxm2q0sckjx3njadjhpk4hym817xn2r555cl1vd1x9xpqjy"; depends=[broom dplyr forcats ggplot2 lifecycle magrittr mvtnorm purrr rlang survival tibble tidyr]; }; survPen = derive2 { name="survPen"; version="1.5.2"; sha256="1mmz7bbl1l0pkpgi8jqfdpq33yqa6c2442g3q7cqlyy1s7p1dcd9"; depends=[Rcpp RcppEigen statmod]; }; survPresmooth = derive2 { name="survPresmooth"; version="1.1-11"; sha256="1rgz4g4irm6kg1ysb1sz9jar5i7l87blfhlhcmsg5bjbw0ih5xbn"; depends=[]; }; @@ -17490,11 +17545,11 @@ in with self; { survSNP = derive2 { name="survSNP"; version="0.25"; sha256="0awj4vh7sdal873bkp7f0ff4r87idgdn5cby405flvivlxv83i9z"; depends=[foreach lattice Rcpp survival xtable]; }; survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.0"; sha256="06xric3fwv2rdrbapsawrg288s2sflzrbx1a4yc7lzxzxbsbs619"; depends=[]; }; - surveil = derive2 { name="surveil"; version="0.1.1"; sha256="135y4qdkwpb8dv63bybspdynfr0d3sqz0ayjm82nhy3flah2v5ka"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; + surveil = derive2 { name="surveil"; version="0.2.0"; sha256="0lnib5ds8s34klgps4kn367hl6bwv4gz5py9l3difz43wwhk78j1"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; surveillance = derive2 { name="surveillance"; version="1.20.0"; sha256="0dbqr43fhg5zdh6wzw6licq6c5qqab710gw5ag45l8j1z3q06x8i"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; - surveyCV = derive2 { name="surveyCV"; version="0.1.1"; sha256="03pyxav8z223qplsi9srmaf156zgdy3814k5krgskb86bhi0881d"; depends=[magrittr survey]; }; + surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; surveydata = derive2 { name="surveydata"; version="0.2.6"; sha256="1z72l9dzdhg2r7wd284wa569f4bcnqhz6lha1lch1am7g2i3633d"; depends=[assertthat dplyr DT ggplot2 magrittr purrr rlang scales tidyr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; @@ -17508,8 +17563,9 @@ in with self; { survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.3.0"; sha256="0s4cihmjhg94zcbvr7c1pxdjyc0rpbqlw1gni5xkdhqp4lnqmygf"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.2-1"; sha256="1rskhawhpkzi3laq452kgr1740p6998z7c7p95f2023ymkdm4rxv"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; + survivalREC = derive2 { name="survivalREC"; version="1.0"; sha256="1c4qvk2qd5ffn4kfkglwn3iyisnd2y0hzzn92c57vb94d4h057hx"; depends=[KernSmooth survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; - survivalmodels = derive2 { name="survivalmodels"; version="0.1.11"; sha256="0las1appms4j2g7c31yxm49z1aq2ahjgczilh4m3yy0xg5nckyr1"; depends=[Rcpp]; }; + survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; survivoR = derive2 { name="survivoR"; version="0.9.12"; sha256="0mda9zjag453m60c2njzjpifz88q09vjkys0xds8vsdzmi70vjvv"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; @@ -17531,7 +17587,7 @@ in with self; { svUnit = derive2 { name="svUnit"; version="1.0.6"; sha256="08nmlbdrmmz04ira30721l99i74w07w2avdr4pypswf2sq1nqgi6"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; svars = derive2 { name="svars"; version="1.3.9"; sha256="1i9wnfrgr9x6qfqhl9bc4wiz4wxmzjfcmg7wvy3zjrfszmibaf78"; depends=[clue copula DEoptim expm ggplot2 pbapply Rcpp RcppArmadillo reshape2 steadyICA strucchange vars zoo]; }; - svd = derive2 { name="svd"; version="0.5"; sha256="18bi42pgml9i8jflfk29ws0bfblkj3f69z9p9mkd0m8kcx4d8hnh"; depends=[]; }; + svd = derive2 { name="svd"; version="0.5.1"; sha256="04x1dbcwxs5f61m195l0lv65b38fw9mnh8l672pgiyvvfm8bdp6l"; depends=[]; }; svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; }; svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; }; svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.4"; sha256="1iglgwbyxf5q4716h9ba2cfmxh1qq16zwy54krnawg4580v8ydh2"; depends=[htmlwidgets]; }; @@ -17541,6 +17597,7 @@ in with self; { svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; + svrep = derive2 { name="svrep"; version="0.1.0"; sha256="0v15c57lkriqg50iyiwmmv47fw1q9kf1fswcmsff5d95x3zgydhh"; depends=[survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.0"; sha256="1dq6rmk3sqpgm7q1chsvwjhc2lfsrgd4isgpxc907w5waqk91n16"; depends=[survey VGAM]; }; @@ -17576,7 +17633,7 @@ in with self; { sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.2"; sha256="0351qlvyynygjf43q93gkqzzaff3v6gynvbks1ix1mank3afn226"; depends=[sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="3.0.1"; sha256="1y94d6ajf0l492nrd8wsz3b6x724zcyhipasgyx65nx3sgha6yp8"; depends=[Matrix sybil]; }; sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.2"; sha256="0s8yqzn7llzby5v1p7is7qv0m8dzwf14r3m32slf898nxrs131xr"; depends=[MASS Matrix sybil]; }; - sylcount = derive2 { name="sylcount"; version="0.2-3"; sha256="0ljikwlzscgwbza7z634zn726zv9bxa4j931sx8r6z01gfv3z94j"; depends=[]; }; + sylcount = derive2 { name="sylcount"; version="0.2-4"; sha256="1qwxag92bpyi5sjr4373divw5zfgzvj2ji99ilcssnqwi46c4w77"; depends=[]; }; syllabifyr = derive2 { name="syllabifyr"; version="0.1.1"; sha256="1z61afxx2bm37hxvv1fl3x7ibhkp3h1ivl3k9prqzsaw4j592vfx"; depends=[dplyr purrr stringr tibble tidyr]; }; sylly = derive2 { name="sylly"; version="0.1-6"; sha256="0f03k9d15fkym14y94jb7rkh228blc76jlm7pk229b44hcbh3mmm"; depends=[]; }; sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; }; @@ -17603,7 +17660,7 @@ in with self; { synthesisr = derive2 { name="synthesisr"; version="0.3.0"; sha256="0b50d5hfkscggn2f6h8wyljkar08r8cbc0a4l12f809w5hdnjc63"; depends=[stringdist]; }; synthpop = derive2 { name="synthpop"; version="1.7-0"; sha256="17f2fc4l5733zqrmxvwq9yklraxxxp37810fsnj9lb8sq4cl70rn"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest ranger rpart stringr survival]; }; sys = derive2 { name="sys"; version="3.4"; sha256="11q4zmx62w44p1j34frwmrsp23mc7l4n354i0zyziw92yax8zy0p"; depends=[]; }; - sysfonts = derive2 { name="sysfonts"; version="0.8.5"; sha256="1fhf0x5sqx3mv72j9d0clkq1qzqiqxbxn1h808f7ccf0mb04v43y"; depends=[]; }; + sysfonts = derive2 { name="sysfonts"; version="0.8.8"; sha256="1fq5dn4l09sgrbznfz9cakf4vgc3761zwicvqaazh0s8mzbaicpn"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; systemfit = derive2 { name="systemfit"; version="1.1-24"; sha256="180ah91i98gjswpbkkdjgnc2c9rz3pl5bw035iks92nd5vl6w5wz"; depends=[car lmtest MASS Matrix sandwich]; }; @@ -17615,13 +17672,12 @@ in with self; { tRnslate = derive2 { name="tRnslate"; version="0.0.3"; sha256="0sm0cqxylsxmnhqs1c8w81d6q2sj7nmm86mds59kiyspy9m67sbc"; depends=[]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.7"; sha256="1j06rc5s6jpz8i116m98ygc75sx6lk8jd9gw6fb8q342mbbmqh8h"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; - taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; }; tab = derive2 { name="tab"; version="5.1.1"; sha256="1kg8c1safi9klkx2mdkmsf5dn9piy4jljwd4ma7g4jz2rwl4jzhv"; depends=[dplyr kableExtra knitr MASS survey]; }; tabbycat = derive2 { name="tabbycat"; version="0.17.0"; sha256="1q18vnk4jyql46vjj6bhn2sa65yswg1hw8mbrwv7602dfk09p74x"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; taber = derive2 { name="taber"; version="0.1.2"; sha256="0cib8fsib4q8nf18vcpailvkplf57cm8fshb09clxm3zcp8j9c17"; depends=[dplyr magrittr]; }; tabit = derive2 { name="tabit"; version="0.2.1"; sha256="0jy95jpbzj4rgaxmm6ki9wr0cl1w13pygq3yavdccjr82mayfpvc"; depends=[]; }; tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.4"; sha256="19yg8m264f1hjsi8b7zxjpbvlaz2jrxj2bd9nv95g52dvlysg4nk"; depends=[openxlsx]; }; - table_express = derive2 { name="table.express"; version="0.3.3"; sha256="1p8qq00b6nwcfzqi7mm1bg9w1iwmaqq1imh5p032ji76jxhnm3x1"; depends=[data_table dplyr magrittr R6 rlang tidyselect]; }; + table_express = derive2 { name="table.express"; version="0.4.0"; sha256="1jmpab9lnvnry6i0k9hhvb30hswf6670bvjbr2ir3s2ffj819yw1"; depends=[data_table dplyr magrittr R6 rlang tidyselect]; }; table_glue = derive2 { name="table.glue"; version="0.0.2"; sha256="01yskmc604jdy6givddm0nhr9ylf7p68v2xz1p2mqylhws1lszph"; depends=[glue stringi]; }; table1 = derive2 { name="table1"; version="1.4.2"; sha256="1cw85nj6w9fk66wjbyz08ya6g027cfj3brb0sx7ar0n7zyc8rhb4"; depends=[Formula htmltools knitr yaml]; }; table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; }; @@ -17651,6 +17707,7 @@ in with self; { tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; tailDepFun = derive2 { name="tailDepFun"; version="1.0.1"; sha256="0rrjg4ky3pjbfwppmnwyijvlzq3c3nf33rl0w4vly52v1ramp5c6"; depends=[copula cubature mvtnorm SpatialExtremes]; }; + tailTransform = derive2 { name="tailTransform"; version="1.0.4"; sha256="0nflrzq5m1jwf91lavwwzl6ja4qswva1z4gpdbm3q5iscg1hbwp7"; depends=[]; }; tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; }; taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; takos = derive2 { name="takos"; version="0.2.0"; sha256="09w9lkqhxdb26fvrsb8n16601kqpr2smplipx3lj6cdgbyhb1hqz"; depends=[baseline broom colorRamps data_table deSolve devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; @@ -17660,22 +17717,22 @@ in with self; { tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.0"; sha256="08whj66nf3idqvjnzgni5iqyqakbdwvrapdixx0zff7q8qbkar8z"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.4.1"; sha256="1js09qap4a63m7ldfk8lxj438p5fjy893zqck7vvzmv6zyzxhlg6"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.5.0"; sha256="0xqbally2ayr1n2wsc8w985i4j0wfqpndhhdcrpn7hayc9gk4crd"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; targeted = derive2 { name="targeted"; version="0.2.0"; sha256="0xcw2xcvp4yz37djl2m7fwr61hfrarbrr05rcnbqkjs3y4q5p99g"; depends=[data_table digest futile_logger future_apply lava optimx progressr Rcpp RcppArmadillo]; }; - targets = derive2 { name="targets"; version="0.10.0"; sha256="1c9llj6iwry6mj92sy1hqk9kkyyxwa60zr20vj4hivlfff1s2h88"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + targets = derive2 { name="targets"; version="0.11.0"; sha256="0dwx34sq0m6pmi2kn47yidrjdgsy43ykvzz3zsvh1yz9jh19w7q8"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.1"; sha256="0w9rm6cnc1mpfyklb8njzjwph2c38niinzxiflrqjqfdp7nd8281"; depends=[assertthat colt crayon data_table magrittr openxlsx stringi withr]; }; tau = derive2 { name="tau"; version="0.0-24"; sha256="1q8pd7m6rd0899c44plxns5yydifhsccyb51glgw07ni5v4rz3gh"; depends=[]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; - taxa = derive2 { name="taxa"; version="0.4.0"; sha256="1clvq69z68xidv5m1s8vmavh8l6bv6dpb9iln7axb5jbj0iqx1xj"; depends=[cli crayon dplyr jsonlite knitr lazyeval magrittr pillar R6 rlang stringr tibble tidyr vctrs viridisLite]; }; + taxa = derive2 { name="taxa"; version="0.4.1"; sha256="0k55rn64iz6zbmvkrmx01i716k0vzqqi4ahaw63dfvk3n10gx4zy"; depends=[cli crayon dplyr magrittr pillar rlang stringr tibble vctrs viridisLite]; }; taxadb = derive2 { name="taxadb"; version="0.1.4"; sha256="00cbbma9wahm6ka75kzpfqgns0cr2z2ri6bpp919icwkvi5rpbmr"; depends=[arkdb contentid curl DBI dbplyr dplyr duckdb jsonlite magrittr progress R_utils rappdirs readr rlang stringi tibble]; }; taxalight = derive2 { name="taxalight"; version="0.1.5"; sha256="035jzz1dk1icxs9mbd6q091ljf1lalr0wwbcz6a90avwyqphjjx3"; depends=[contentid thor]; }; taxize = derive2 { name="taxize"; version="0.9.99"; sha256="0738fzckbwkgf21vranxhcfjq487rp3kjdnz2gfvdd1dm21jfp8s"; depends=[ape bold cli conditionz crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.3.0"; sha256="1d7wz6df624263myq4rlvr3mhzhhhdglrrs7f44j201z4f536a2z"; depends=[curl DBI dbplyr dplyr hoardr magrittr readr rlang RSQLite tibble]; }; taxlist = derive2 { name="taxlist"; version="0.2.2"; sha256="0xdl7aw3ifn4v2wclk38iyayy9r71cx5diir1m4pws986qfdddb4"; depends=[foreign stringdist taxa taxize vegdata]; }; - taxonbridge = derive2 { name="taxonbridge"; version="1.0.4"; sha256="18n87w3nf3qb5f1ci0bcq7mji14mxh5cx6klb6qw4g8qzr35cznk"; depends=[dplyr ggplot2 purrr rje vroom withr]; }; + taxonbridge = derive2 { name="taxonbridge"; version="1.0.5"; sha256="0s9w4p76s1ijrg19pr2y2hixqp6blgxkin569gz3wwny0ibq3b2i"; depends=[dplyr ggplot2 purrr rje vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.8.0"; sha256="0i1xn5x8c555hdlnfbhpga4vzn1l6kcqjgcw472y8yg0n7s2birx"; depends=[curl data_table R_utils RSQLite]; }; taxotools = derive2 { name="taxotools"; version="0.0.79"; sha256="1q69dh1ifa7mc8y3bdgvvg97s9prflh6mczqr4clxnsysd3xhafs"; depends=[plyr sqldf stringdist stringr taxize wikitaxa]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; @@ -17738,8 +17795,9 @@ in with self; { terra = derive2 { name="terra"; version="1.5-21"; sha256="0gzl0ka19jjw0dmaghjk2sgwi78kkz4w3rlfkym62rdarhlfj7h9"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; terrainr = derive2 { name="terrainr"; version="0.6.1"; sha256="0xxvd536zgnmgb6p9fvkxaga4mqgb7qzd69xp8zm77a380j8dk05"; depends=[base64enc ggplot2 httr magick png raster rgdal sf units]; }; - tessellation = derive2 { name="tessellation"; version="2.0.0"; sha256="1pgjaisykyh0096ilfxhp5hlh6p82lsi0p184jfig84afcihn9p8"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; + tessellation = derive2 { name="tessellation"; version="2.1.0"; sha256="0pbdf18pz1j18x7lsz306x87p0d339a0y1nacynsqly0706g1s3d"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; tesseract = derive2 { name="tesseract"; version="5.0.0"; sha256="1xdwjm3bing15ljdicl20g88ymmd0bbjmlbah5hzvws5b656iicn"; depends=[curl digest pdftools rappdirs Rcpp]; }; + test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.1"; sha256="0wjdqvsyv33fsg1lljp9m0bhz38mpfgpgickgj4zdspc9x6lbnv6"; depends=[]; }; testarguments = derive2 { name="testarguments"; version="0.0.1"; sha256="1x77z0pljfi6z4bs6db3zsjbpyypsd3jbd0ykh4pq07595phh8x5"; depends=[dplyr ggplot2 magrittr plyr reshape2]; }; testassay = derive2 { name="testassay"; version="0.1.1"; sha256="1gc35s5an0cpvadwx4bswy5lzcp01az3gnkjhvph6sm3pi3xjxm7"; depends=[]; }; @@ -17749,14 +17807,14 @@ in with self; { tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.1.2"; sha256="0ndnmv3gbhlsyqya382wqfkkhlrgpdjmh7mymsv6ja52ihbachgd"; depends=[brio callr cli crayon desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.1.3"; sha256="0c7whxl6zwapqzdplwplvhs73w9blb419h2mdl21pwmqjhzjaq68"; depends=[brio callr cli crayon desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; tetragon = derive2 { name="tetragon"; version="1.0.0"; sha256="17n6g262f19bvxh0i35xcpf9qbdzaff80vvmx8vsijjiniw2hrbq"; depends=[abind ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; - texPreview = derive2 { name="texPreview"; version="1.5"; sha256="11njmn29qq50iff30in9i0yfi6ypnpqsx3317smr9fiw3hgda3c5"; depends=[base64enc details fs htmltools knitr lifecycle magick magrittr rematch2 rstudioapi svgPanZoom whisker xml2]; }; + texPreview = derive2 { name="texPreview"; version="2.0.0"; sha256="0lw9yvpw5id9ix5kzv5zw0rlw6098hpjrzx00l0cn37vljmqqg0p"; depends=[base64enc details fs htmltools knitr magick rematch2 rstudioapi svgPanZoom tinytex whisker xml2]; }; texmex = derive2 { name="texmex"; version="2.4.8"; sha256="115x7j2kvifzsrmh8zy6xymm1p01sxk4c26zdmi0p51bsgvs46ih"; depends=[ggplot2 mvtnorm Rcpp]; }; - texreg = derive2 { name="texreg"; version="1.38.5"; sha256="1d0syszvxhxiplwsbq12s6rw4lrrbn4w3mmljs7vkw8p4gd8fp78"; depends=[httr]; }; + texreg = derive2 { name="texreg"; version="1.38.6"; sha256="1z8j9whybvzjcrvivk3jhh8clfrbwdb7ss6mhqp0dlhbq2vn7gb8"; depends=[httr]; }; text = derive2 { name="text"; version="0.9.50"; sha256="0s81j3kbrzxcfbwxnk5hbdqlb3pjmlxjswjy8pj7s13h5gnsm1bw"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; text2map = derive2 { name="text2map"; version="0.1.3"; sha256="0p8knb450rz79531cb9kkc4rlns3p7qrq212jss2jcwxfnl640dv"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; @@ -17779,7 +17837,7 @@ in with self; { textplot = derive2 { name="textplot"; version="0.2.1"; sha256="10nxh9axhy6kyp6f3rz7smq08yl35ydx9jx47bs7i0bmcl2kwxvl"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.1"; sha256="0a777wchiax0y8jprvz5xw8h1xh7yvad0wrqhkgbqy5p3cvlcih6"; depends=[data_table digest igraph]; }; textreadr = derive2 { name="textreadr"; version="1.2.0"; sha256="163ziizi3r00gamdl7wiwy5qsmb4sxlkw64qfij0b4jcr7p1ncqg"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; - textrecipes = derive2 { name="textrecipes"; version="0.4.1"; sha256="0wdkfh9591pfi4n0xj38kny5jbb43csdgcjiag3xh3zdmyhaz8li"; depends=[dplyr generics magrittr Matrix purrr Rcpp recipes rlang SnowballC tibble tidyr tokenizers vctrs]; }; + textrecipes = derive2 { name="textrecipes"; version="0.5.1"; sha256="1bc6wm4y4dg11g30rv67s4wya0kmvmp2pxxzv4aakhlb7badcbpr"; depends=[dplyr generics glue lifecycle magrittr Matrix purrr Rcpp recipes rlang SnowballC tibble tidyr tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; textshape = derive2 { name="textshape"; version="1.7.3"; sha256="0k9injxykgj2qprc7dygd7gafvcbh3r9x84qzaa1al21pk0dz7ds"; depends=[data_table slam stringi]; }; @@ -17799,27 +17857,27 @@ in with self; { tfplot = derive2 { name="tfplot"; version="2021.6-1"; sha256="0w0m9d2lvjl96vxwvks2v086y4gqiv2n0d50j2yrngys9p2nrlxc"; depends=[tframe]; }; tfprobability = derive2 { name="tfprobability"; version="0.15.0"; sha256="0xsszigx805kwr5df4gnyxkng4sq9h0wjxa8lh2nvh4v24s4pgxj"; depends=[keras magrittr reticulate tensorflow]; }; tframe = derive2 { name="tframe"; version="2015.12-1.1"; sha256="1yff22jzh1mp73zbz2mav6z8m42lylfjhb8dgxj4337fv3if3i13"; depends=[]; }; - tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; }; + tframePlus = derive2 { name="tframePlus"; version="2022.3-1"; sha256="1axrvfigdmwmas0q3qlmk4m7jybqcssjgmyww2knp8jw7kp212vy"; depends=[tframe timeSeries]; }; tfruns = derive2 { name="tfruns"; version="1.5.0"; sha256="04lfckg1if3kfwcl4s4fcc9aw04crwk4m1qr55ag22j2x2jlb2l9"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; }; tfse = derive2 { name="tfse"; version="0.5.0"; sha256="05q75xsiy955xwgchagk7l7725y6mylp5lj5284xm7y2xh197zp3"; depends=[dapr magrittr]; }; tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; tgcd = derive2 { name="tgcd"; version="2.5"; sha256="1zsmard9vai0m4gz5mf5b9qqv6i7h5xhv1mbs2sc0kcznk28jirn"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; - tgp = derive2 { name="tgp"; version="2.4-17"; sha256="0hl9nv2nayhq9jiy6lrgn702lb95allqiq8v221rj9pzxpc1230c"; depends=[maptree]; }; + tgp = derive2 { name="tgp"; version="2.4-18"; sha256="1hwpjmij2a10d410bqkmj06ri109yr5zcc27r2m8x3zyd2wmb2qi"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; tgstat = derive2 { name="tgstat"; version="2.3.16"; sha256="12apvcpdwfng0sp2v80xvpk7ynbadi2lvbfk14hlcsvw8h3rb268"; depends=[]; }; tgver = derive2 { name="tgver"; version="0.2.0"; sha256="0p8pm47kpajwhhk3a96rl2nfj69qqvbw5qwp1in3qv11wxv4cbyj"; depends=[callr geojsonsf plumber]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; - themis = derive2 { name="themis"; version="0.1.4"; sha256="0zc7djygyiy1sjgvbznb6nqcglfnbybxaz5frphns92m7smqy0l9"; depends=[dplyr generics purrr RANN recipes rlang ROSE tibble unbalanced withr]; }; + themis = derive2 { name="themis"; version="0.2.0"; sha256="0sliczk31584qcxhmyaczg2r497zk8w9mki4v00ndjw36jz37x54"; depends=[dplyr generics glue gower lifecycle purrr RANN recipes rlang ROSE tibble unbalanced withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.15"; sha256="17mfw067advk8vxlz8x0w0vww3718zp2fcs00sca8ivlh8yh9fcg"; depends=[assertthat crayon devtools dplyr ggplot2 lazyeval lubridate magrittr officer purrr readr rvg stringi stringr tidyr]; }; - this_path = derive2 { name="this.path"; version="0.5.0"; sha256="0fcmdkwrg4gmss2q2xkwrlr6wy5v0qzqzb5l890adihmqvlhb8ra"; depends=[]; }; + this_path = derive2 { name="this.path"; version="0.5.1"; sha256="0fmhi1ijnxcka7pb63azzga3iv4k5zkb7dnc9f2adphmnq4lqv70"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-1"; sha256="1ssx9sm55ycdny36nlydxqylfr0d51hyj3rgsmnk5d8wyhivnxb9"; depends=[httr magrittr R6 rlang xml2]; }; @@ -17831,7 +17889,6 @@ in with self; { threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.4"; sha256="0zddd32fnfi98zwq08akkvhkg3c66sj3jii6ap8p1m9a0wg2k2k3"; depends=[Formula survival]; }; threshr = derive2 { name="threshr"; version="1.0.3"; sha256="1vs2jfvh1pjzyfz1s4w92sw13yz2nhc28gc3iyqz8a82rrdm4mdq"; depends=[revdbayes rust]; }; - thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; thunder = derive2 { name="thunder"; version="0.3.0"; sha256="0lzaab5acgy4s7qkq10l0yfdgrsya74757a025j205jin4m49hai"; depends=[aiRthermo climate dplyr Rcpp]; }; thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; @@ -17847,7 +17904,7 @@ in with self; { tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="0.2.2"; sha256="15xbkcfikzlglhh2y54rbpknbhzm6h9bq72f4h3g8bmfr44vy72g"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.4"; sha256="0djkdjgs64f00pcs5gc8vmijyjsfb5sm0p64bybhs1y0kb3wlnl3"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.1"; sha256="1vq7dfqb2396lw49wa5mjn60nvha6hv9ziknh14b4cj1qh85pz7x"; depends=[ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.2"; sha256="0wbd3jf63j26qcnraqc94mz62cvkc8wqp7ww09m1kd83ik8mlca7"; depends=[blavaan ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; tidyUSDA = derive2 { name="tidyUSDA"; version="0.3.3"; sha256="1aqcvqc64qb8dbpmiw4cl06k0fh34fz5svzhjdgzrywl5qan3br3"; depends=[crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr purrr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.2"; sha256="00672xhg8a8r4sk36sm827bb435r1hchkphl1jpnkld8vbdhvpd2"; depends=[arrayhelpers coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; @@ -17861,7 +17918,7 @@ in with self; { tidycwl = derive2 { name="tidycwl"; version="1.0.6"; sha256="1i2z5dxrqz1l3366fmmgc4pfqnhm91nlc0m4y8mvzwgsgmf6dkxp"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; tidydatatutor = derive2 { name="tidydatatutor"; version="0.1.0"; sha256="0d7qr1j5ag6ikzq89xc7w9pvsbcp14r0x8ra9v4svx59bg31n94q"; depends=[clipr knitr rstudioapi]; }; tidydice = derive2 { name="tidydice"; version="0.1.1"; sha256="1iagm3avd0ncnd2jrx1mgri96gcv3bs7vbn2qdq44idv222k9igd"; depends=[assertthat dplyr ggplot2 magrittr purrr tibble]; }; - tidydr = derive2 { name="tidydr"; version="0.0.3"; sha256="1sdh0grqccn1l2i4ji5q1yc5iz4vyzdfmd6qy5ypsza6bnkpgg1d"; depends=[ggplot2 rlang]; }; + tidydr = derive2 { name="tidydr"; version="0.0.4"; sha256="0ws4z5ldz7wyhxn7h5gf8j4p3srvr5dfr6xxrf1rymx1iz9pd6sv"; depends=[ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; tidyfst = derive2 { name="tidyfst"; version="1.6.0"; sha256="1x7aiypcwx9vdfpwgfza86xdk545kf038mc9gl84kga4binic4pl"; depends=[data_table fst stringr]; }; @@ -17871,14 +17928,14 @@ in with self; { tidygenomics = derive2 { name="tidygenomics"; version="0.1.2"; sha256="1cnwmmmzp9kg4k7iy2kgb22bdllpnz257pv1ahy3l11zy6bl48fc"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp rlang tidyr]; }; tidygeoRSS = derive2 { name="tidygeoRSS"; version="0.0.1"; sha256="0bppkwbxmm8ps1cnrhzxkzm2pbi3s5bfiwx8fcrp31x81jl61w1x"; depends=[anytime dplyr httr jsonlite magrittr purrr rlang sf strex stringr tidyRSS xml2]; }; tidygeocoder = derive2 { name="tidygeocoder"; version="1.0.5"; sha256="1ffj8ka5miv3jnds7fdrkcqdc3m2w1ab724z9m10biky213skqka"; depends=[dplyr httr jsonlite lifecycle progress tibble]; }; - tidygraph = derive2 { name="tidygraph"; version="1.2.0"; sha256="17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85"; depends=[dplyr igraph magrittr pillar R6 Rcpp rlang tibble tidyr]; }; - tidyhydat = derive2 { name="tidyhydat"; version="0.5.4"; sha256="0pkh6pd8rvjlang5zf15c2ca465shi46ks3mbzyymdy5sdj63hdf"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; + tidygraph = derive2 { name="tidygraph"; version="1.2.1"; sha256="0dmdff3bkg53xn0c51xd6k2d9c7l250x1lhl5z3libf533dw5g9g"; depends=[cli cpp11 dplyr igraph magrittr pillar R6 rlang tibble tidyr]; }; + tidyhydat = derive2 { name="tidyhydat"; version="0.5.5"; sha256="1lb74v4p31rk7nrk5lldjb0iqizqvkia0gsqlvwkysh7xs1hpig9"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; }; tidyjson = derive2 { name="tidyjson"; version="0.3.1"; sha256="1rx5ncp20j9mhcziyqb0vgfq9061qylgvfwz27dsyz58r8fygwnq"; depends=[assertthat dplyr jsonlite magrittr purrr rlang tibble tidyr]; }; tidylab = derive2 { name="tidylab"; version="4.1.1"; sha256="052wgx4dfbr806b9r0cfblkwaf1qnrlf5ngm1c029ggss3br7ki4"; depends=[cli crayon decorators dplyr microservices purrr rstudioapi tibble usethat]; }; tidylda = derive2 { name="tidylda"; version="0.0.2"; sha256="1zwy94gpr43dc6ld3rjmr5rkapmxji6kd3p363zl03wn5qf3wbws"; depends=[dplyr generics gtools Matrix mvrsquared Rcpp RcppArmadillo RcppProgress RcppThread rlang stringr tibble tidyr tidytext]; }; - tidylo = derive2 { name="tidylo"; version="0.1.0"; sha256="135aw7zqgxz7l3zgskhzy72lgm1xwl50566s0s45dq7h6ah0vi5d"; depends=[dplyr rlang]; }; + tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; - tidymodels = derive2 { name="tidymodels"; version="0.1.4"; sha256="18krycdn0h1i8swrq6bgj8qnb200rr0pqhr6maq3h1jc66x0y7nd"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; + tidymodels = derive2 { name="tidymodels"; version="0.2.0"; sha256="1xkv4s4kn7k9137svb39zrm5302gxpxyp1jv5bb6z0xrvj5wwa4i"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; tidymv = derive2 { name="tidymv"; version="3.3.0"; sha256="0r192jiwfj6pk41jpap8gfk0irjkx2877qiqxi1hm196hns6hpjg"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; tidync = derive2 { name="tidync"; version="0.2.4"; sha256="1nm3021m3xnn4xkprkxd9sj9bwvfbwhrdhfdkfhsc9azqy3rgg9f"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; tidyndr = derive2 { name="tidyndr"; version="0.2.0"; sha256="1c4g57zp50mfrsh8lac4iava37fx39i2yrjfrb1m0j22grsczfml"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; }; @@ -17899,16 +17956,16 @@ in with self; { tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; - tidytable = derive2 { name="tidytable"; version="0.7.0"; sha256="14acqg5wvyfndl85fjgnwkyjwvyyvdk0z2884w5gxvc4aj0xy2g3"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; + tidytable = derive2 { name="tidytable"; version="0.7.1"; sha256="175b484w1iz1ppqlpffbz96xpwa723w8gq1hnj67f3qggwbf5yzs"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; tidytext = derive2 { name="tidytext"; version="0.3.2"; sha256="0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; - tidytidbits = derive2 { name="tidytidbits"; version="0.3.1"; sha256="0fqqmisp339ynr5p5qs2dzshx031kggp7c70zm2w1v932xpalsrz"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; + tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.3.0"; sha256="1n7c4iblxa1yifh51x4767k61qp99r6r4pchcyvz4bq7jbvclf18"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; tidytree = derive2 { name="tidytree"; version="0.3.9"; sha256="1prfv2jy6z4zp4gyi9krzbysipsbnjrkxcccflm4nwsd9i7mshqj"; depends=[ape dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.1"; sha256="0ck6xmsw5p168jmw2fqv79fzfnw5jckfra7mfii261j6kl89bkw3"; depends=[broom cli crayon dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; - tidyvpc = derive2 { name="tidyvpc"; version="1.2.0"; sha256="1xih8gdc44ddi5kqx8kq9i3pz21hddha87fpb58wjfr5hsaw18sy"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; - tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.0"; sha256="0gbvb5vbxjccs9ac5xjbslqg7h5y2cw71d69q44jc7i1iqwckzys"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis WikidataQueryServiceR WikidataR]; }; + tidyvpc = derive2 { name="tidyvpc"; version="1.3.0"; sha256="1in9wsgibf3srba6bzfz3b7hpwhmj5xblzydr612w7wp898zclpz"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; + tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.1"; sha256="02zj4142pg1072dwjrfnmnpvy6jff55sr2pz5b72j5l7ldnk28fy"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis WikidataQueryServiceR WikidataR WikipediR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.7"; sha256="1wg8h5fd2hd8ilshrbcs99q18p15687dx8j51v5pyd30pg5cab7b"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-11"; sha256="0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq"; depends=[]; }; tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; @@ -17919,11 +17976,13 @@ in with self; { tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="1.6"; sha256="0q8niaa5l4xh2qfp243321ybqxg7s974wvifr4fdwnjgyjxgn57s"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.11.0"; sha256="1lgagf8ix8bnl6g7qp0lzaz4xd6wlp9xa02rqyxb30bk0g022ik7"; depends=[nanotime Rcpp]; }; + tiledb = derive2 { name="tiledb"; version="0.11.1"; sha256="1gyghz21d3v13129a1d3klpswir0j2j7al0rg6x2x5k81g3ijclg"; depends=[nanotime Rcpp]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; + timbeR = derive2 { name="timbeR"; version="2.0.0"; sha256="1w3msacp58qsl9jsaaw9985kjdrzl8513lmr5wp6afl8xpc0yqwq"; depends=[cowplot dplyr ggplot2 lazyeval magrittr miniUI shiny tibble tidyr]; }; + timbr = derive2 { name="timbr"; version="0.1.0"; sha256="13v6manmaclpjc04rx0ddhcawfh9b8lbvb7hhzsry1v34ffpj64k"; depends=[dplyr memoise pillar purrr rlang tibble tidygraph tidyselect vctrs]; }; timeDate = derive2 { name="timeDate"; version="3043.102"; sha256="0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"; depends=[]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; @@ -17939,8 +17998,8 @@ in with self; { timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; timereg = derive2 { name="timereg"; version="2.0.1"; sha256="1mrqy54jwgfygjlm7hvlx42c631is1nc1q6jd3chw2cx3pi9lhiq"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; - timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; }; - timetk = derive2 { name="timetk"; version="2.7.0"; sha256="173vg1mq5557fn39h36kqladc6b0bp22kmfv5pwi9lcgyc47sd2a"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; + timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; + timetk = derive2 { name="timetk"; version="2.8.0"; sha256="0jwa3qllninjsq5xx7rhls72w1955a3ysscaq80vby7fjij80pwb"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="2.0.0"; sha256="07padnd90s8s62sfcmg5l6b64md1cl4cfsxp5xm92nrlz82ksbbs"; depends=[htmltools htmlwidgets jsonlite lubridate magrittr rmarkdown shiny]; }; @@ -17956,7 +18015,7 @@ in with self; { tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.37"; sha256="1na8g4z1crq0ia9ba17d0qxaif47jij2z3y14xlxjv7x243k6krg"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.38"; sha256="11hww4x4q44xg559gplmjc6hmzmap0w249nnzyw5dy2ys30bbhga"; depends=[xfun]; }; tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; @@ -17986,7 +18045,7 @@ in with self; { tm1r = derive2 { name="tm1r"; version="1.1.8"; sha256="15w703rd7mfm32b62yv9mpms2fjq9ifmc1n460vsrpqz1dkiavb9"; depends=[httr jsonlite]; }; tmap = derive2 { name="tmap"; version="3.3-3"; sha256="012y50hbz2f87mwcmd9lp9ikcplvkz51g4fmanw3swlc1zpqxrb0"; depends=[abind classInt htmltools htmlwidgets leafem leaflet leafsync RColorBrewer rlang sf stars tmaptools units viridisLite widgetframe]; }; tmaptools = derive2 { name="tmaptools"; version="3.1-1"; sha256="0bal3czrdr93qig8s5cf5szld5vjbbks67rismfhlkmlgw6wp2gx"; depends=[dichromat lwgeom magrittr RColorBrewer sf stars units viridisLite XML]; }; - tmbstan = derive2 { name="tmbstan"; version="1.0.3"; sha256="0y05albvggavhdijymwhw2ffg07jnvspppysmbz984c1my98zw4l"; depends=[BH Rcpp RcppEigen RcppParallel rstan StanHeaders TMB]; }; + tmbstan = derive2 { name="tmbstan"; version="1.0.4"; sha256="1amjsvj7m7vyyhbppklw15n6xd02d2qjhswwzh543kc2f2hy79l4"; depends=[BH Rcpp RcppEigen RcppParallel rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-13"; sha256="0rf8mz6kdm83pm85kzfyzb8kd3iwaxv5bgphjpxlnq6z32m9yds7"; depends=[]; }; tmle = derive2 { name="tmle"; version="1.5.0.2"; sha256="1m1zz48cp8agxswgrwvvzdh50kyyc84hw328nyhbbnfkx19c6wj7"; depends=[glmnet SuperLearner]; }; tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; @@ -17997,7 +18056,7 @@ in with self; { tmt = derive2 { name="tmt"; version="0.3.0-20"; sha256="1i4y01mbj9qkd4svgmhc18q47yd44jrqv4lsyk69rk1nr09d83lv"; depends=[ggplot2 Rcpp]; }; tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.1"; sha256="0i1g3598d43azyy1bsrvkjybqa5cd991fpmfqi5wv5703zaha2fj"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; - tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; + tmvtnorm = derive2 { name="tmvtnorm"; version="1.5"; sha256="1zk0ak71wlk9d0lkwn6q28sdz4y2k7sgx021vdprlcg4vimn0yhw"; depends=[gmm Matrix mvtnorm]; }; tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.1"; sha256="1gf5gqb333q82cbdw3lfjmxnn8z7qds73xmc8dqm06zcqsfmdbv3"; depends=[Rcpp RcppArmadillo]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.3-0.0"; sha256="1zfx91024dyafkfyjsm2829qsqkz57g6p5v47lp2x0ykrwpdbm37"; depends=[crayon testthat]; }; @@ -18031,6 +18090,7 @@ in with self; { torchvisionlib = derive2 { name="torchvisionlib"; version="0.1.0"; sha256="0kiix21gqpjw4qhz9xwpmlygjy66qxjdk3ja3dbrc1gz3x132drl"; depends=[glue Rcpp rlang torch]; }; tornado = derive2 { name="tornado"; version="0.1.1"; sha256="12wvcc5p5fk6b1w3qhahjad5k0m34f744jszaid8hnrbbfysp8na"; depends=[assertthat ggplot2 gridExtra scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; + toscmask = derive2 { name="toscmask"; version="1.2.3"; sha256="1inryfbci03klv4rlkzf20f3a0sc187lxybd4yn1dimz6f5z71ni"; depends=[]; }; toscutil = derive2 { name="toscutil"; version="2.1.0"; sha256="1ciyfxm3kbgvfqasv90i9ldrbvmkk0ryp310a1f44iih8rpvb2g6"; depends=[]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; tosr = derive2 { name="tosr"; version="0.1.1"; sha256="1hif33q73pbzgrs92ffkfiisxgxk35fyf37bvxb5kccrpwly9zih"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; @@ -18043,7 +18103,7 @@ in with self; { toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; - tpn = derive2 { name="tpn"; version="1.1"; sha256="062kim1wljg3pjzj1www8jljfpz35sylqykbp8w899srr3qmv22c"; depends=[pracma skewMLRM]; }; + tpn = derive2 { name="tpn"; version="1.2"; sha256="1sf2zx3arwf5aix56kb8bj6hx60shpz3jy51mfifxrjy7jcrfrn8"; depends=[moments pracma skewMLRM VGAM]; }; tpr = derive2 { name="tpr"; version="0.3-2"; sha256="0v2s35yjislzaw924r1mk7jqzs0bxx6kyd3g1sc9rxlflvlbp15y"; depends=[lgtdl]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.2"; sha256="0932074lzkzprn8rr8f59ywhgn33fwvbnkxnxg97k29gapx49iyb"; depends=[jsonlite Rcpp testit]; }; @@ -18055,15 +18115,14 @@ in with self; { trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; trackeR = derive2 { name="trackeR"; version="1.5.2"; sha256="1f3giz6naxxyicgy9v0391ang43srwhy9zbiv4zmlc8i9v05b57i"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; trackeRapp = derive2 { name="trackeRapp"; version="1.2"; sha256="1y6n9hgzybz5860qpzj9rdb9yl4k6b9h13d91fqn3qarpnx9n5qr"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; - trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; }; trackter = derive2 { name="trackter"; version="0.1.1"; sha256="11rk53w0y9p0az6ydiq3vy50j1pj4p4cml5dqabrpcgfz4icjkrs"; depends=[data_table dplyr EBImage features ggplot2 jpeg Momocs pastecs plyr raster zoo]; }; tractor_base = derive2 { name="tractor.base"; version="3.3.3.1"; sha256="0w5jw7pf77npkgig7667yikpbwv4dfk1dcq63qm88l409ga2f95p"; depends=[ore reportr RNifti shades]; }; trade = derive2 { name="trade"; version="0.8.0"; sha256="1ly8mb1gm40v72lwk29l3g55f2clrcmvn5vgfijfnc4nq37j1h0j"; depends=[antitrust]; }; - tradepolicy = derive2 { name="tradepolicy"; version="0.5.0"; sha256="1rjyx6mwqxgjprzll9908jgvl0q9dr8axjy6dp4fsxq2pvlnnz8m"; depends=[broom cli crayon dplyr ggplot2 lmtest magrittr msm purrr rstudioapi sandwich tibble tidyr]; }; + tradepolicy = derive2 { name="tradepolicy"; version="0.6.0"; sha256="1hpynl8klfsid7s8ksz7flzd7jblxx8vz0di9hcw5ppvihgh0jki"; depends=[broom cli crayon dplyr fixest ggplot2 magrittr msm purrr rstudioapi sandwich tibble tidyr]; }; tradestatistics = derive2 { name="tradestatistics"; version="3.0.2"; sha256="18v9iq588fp1w8p72an51dargqa7vcgaln8wiz9d2a0sjhq0gxxk"; depends=[crul data_table digest jsonlite memoise]; }; trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; trainR = derive2 { name="trainR"; version="0.0.1"; sha256="0wmxhw8yxkxpw08jma3r0zy7dhsrkbh5wjvd3izp5gf9dn9533cd"; depends=[dplyr glue lubridate magrittr purrr RCurl stringr tibble tidyr usethis xml2]; }; - traineR = derive2 { name="traineR"; version="1.6.2"; sha256="1q6r7q6k0rsx21bxp2vp4rnrjnslngwbv55kmrlmzn4mw61xh33q"; depends=[ada adabag dplyr dummies e1071 ggplot2 glmnet glue kknn MASS neuralnet nnet randomForest ROCR rpart scales stringr xgboost]; }; + traineR = derive2 { name="traineR"; version="1.6.3"; sha256="0yky04b4skj28q8jdz7f3lphfmibly89q2xbqmlr2cp1d2qiw6h4"; depends=[ada adabag dplyr dummies e1071 ggplot2 glmnet glue kknn MASS neuralnet nnet randomForest ROCR rpart scales stringr xgboost]; }; traipse = derive2 { name="traipse"; version="0.2.5"; sha256="1gqpqnf9pi5s90m0h9i1zl9k9g38npnhq3hhzz0kjga979jdqkyw"; depends=[geodist geosphere magrittr]; }; traitdataform = derive2 { name="traitdataform"; version="0.6.7"; sha256="1p5m480k8da4k091jiryqry0zwg8kw3s1cvvpgqjmjkz3v11dxsd"; depends=[curl data_table getPass plyr RCurl reshape2 suppdata taxize units XML]; }; traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; @@ -18071,14 +18130,14 @@ in with self; { trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; trajectories = derive2 { name="trajectories"; version="0.2-3"; sha256="1k1fyjyng9mi3k5v6bpbv3vkqr7c9zjp4yiyynb3rjxqpn1fxx7k"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; - tram = derive2 { name="tram"; version="0.6-4"; sha256="04vv1ydmcjc6rffl35a898jlc9lgvqrjnbc06k4krr0igq2s39ya"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; + tram = derive2 { name="tram"; version="0.7-0"; sha256="00414wq7lnnhv90av673ag0jsgwfx4rbfj8m9aqac0v7pnk12qsh"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; tramME = derive2 { name="tramME"; version="0.1.3"; sha256="0gqvk15xk2wl12vlmshj9sz0qvih03wrbs700hkd1ifjlm2kjlnl"; depends=[alabama basefun coneproj lme4 MASS Matrix mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-6"; sha256="034ij8ir5v31n22pig7v6qizmyhpar1mklifvcskg0ydmpy7qkj4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; transfR = derive2 { name="transfR"; version="0.1.1"; sha256="1pdacv0w5rf7vn6pbyydrjj1v6w8m36v1jaghb28xv3gn27308iy"; depends=[doParallel foreach Rdpack sf stars units]; }; - transforEmotion = derive2 { name="transforEmotion"; version="0.0.1"; sha256="1f4gv78dfbjyr42z908qc92giavhsbm05430c5adyicfpxwnpil7"; depends=[pbapply reticulate]; }; + transforEmotion = derive2 { name="transforEmotion"; version="0.1.0"; sha256="1mzbv1hj78nhm61liqwca9s5pa4rm027zzg4r5g52z7ks9ca0z0c"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.3"; sha256="1dn6h8i7vli2zv4408djyg74j9fv9sjrqf75hx9dh7qnj352wf69"; depends=[lpSolve Rcpp rlang sf tweenr]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; @@ -18109,7 +18168,6 @@ in with self; { treemap = derive2 { name="treemap"; version="2.4-3"; sha256="1fg8gygw38x7msn32barx2irvcv8flm6wqvipnbj1qkh9w89y3q4"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; }; treemapify = derive2 { name="treemapify"; version="2.5.5"; sha256="0g6bwchyn13iksv8vyc4d0c7n1zpy26x1bd6vkrm8ail98y2ia2m"; depends=[ggfittext ggplot2]; }; treenomial = derive2 { name="treenomial"; version="1.1.3"; sha256="1cw17dnayh5pgcgh5wghskq3i0zc7ww8kb8flyqyqrb4za2w47b6"; depends=[ape Rcpp RcppArmadillo RcppThread]; }; - treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; treeplyr = derive2 { name="treeplyr"; version="0.1.10"; sha256="0k5hblnpbs8h2812blc6crx1j9w9r7lzkz3fraxkn4gdfpfi5100"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treespace = derive2 { name="treespace"; version="1.1.4.1"; sha256="177n1h4yjvfmdsyy4anwi1gfxcxxvhdlyqagn74ni3pi6mxvjp4s"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; treestartr = derive2 { name="treestartr"; version="0.1.0"; sha256="05rxy9lmb77ng4266871sd881mlp4rd5qalvsd7ps2x2j4plaqf4"; depends=[ape phytools]; }; @@ -18133,7 +18191,6 @@ in with self; { tribe = derive2 { name="tribe"; version="0.1.8"; sha256="01z1b9k3j4xi5fp9pkpr991yr7x8vk8vysipy7iwdmdr7xg4w4p0"; depends=[dplyr lazyeval magrittr rlang rstudioapi]; }; tricolore = derive2 { name="tricolore"; version="1.2.2"; sha256="0pxahddc3dah4n4xk4i0dkiwvh4wf03gcx8q3nfrsk07zzap1zh1"; depends=[assertthat ggplot2 ggtern shiny]; }; triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; }; - triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; }; trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; }; trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; }; trimcluster = derive2 { name="trimcluster"; version="0.1-5"; sha256="12siv8yx8dcavsz8jk96lwscbj257ar8jpaxksl2zb06987g4fcj"; depends=[]; }; @@ -18152,7 +18209,7 @@ in with self; { tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; - trtf = derive2 { name="trtf"; version="0.3-9"; sha256="0zbad1hpy4glwql0q5l5wn1s5lwpxdh7isxypn5nzwq83vpvcw2y"; depends=[Formula libcoin mlt partykit sandwich variables]; }; + trtf = derive2 { name="trtf"; version="0.4-0"; sha256="1475qlhbgi56fr3nwqkmspqxbfrqxcr1wk1mbm9mj2ph9zlrxphw"; depends=[Formula libcoin mlt partykit sandwich tram variables]; }; truelies = derive2 { name="truelies"; version="0.2.0"; sha256="1qxzw7x7xgp9x6klnq6jv0fl8al2l24br2sd59r5gq076gkqc47k"; depends=[hdrcde]; }; trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; }; truh = derive2 { name="truh"; version="1.0.0"; sha256="0acsyzm6rpmzyq8pg33c631hi4xir49gqxbpshcrr6i2v3q6k14j"; depends=[cluster doParallel foreach fpc iterators Rfast]; }; @@ -18184,7 +18241,7 @@ in with self; { tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; tsentiment = derive2 { name="tsentiment"; version="1.0.4"; sha256="173m4ry58rz5cgffrwzxd9wr22w2ziny82zzby958w6vpyysdsc0"; depends=[dplyr ggplot2 httr progress reshape2 stringi syuzhet tibble tidytext wordcloud wordcloud2]; }; - tseries = derive2 { name="tseries"; version="0.10-49"; sha256="1fhldj95d16cwygw8xg0kvr4xk569mpzprdvahlsf4hzykc2dgs5"; depends=[quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-50"; sha256="16654v691jqpgiisz442h9znlxgj96c9gvhk3pgmm48bfsxs6iqw"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfeatures = derive2 { name="tsfeatures"; version="1.0.2"; sha256="1zi7p7gdd9bg6rpdin88rq9qi43cpk663xmvffa7d5p1w45831kd"; depends=[forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; @@ -18199,13 +18256,14 @@ in with self; { tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsmp = derive2 { name="tsmp"; version="0.4.14"; sha256="1ahqdizygbs49xbgn35fdb5drxwyx2z9ima4fm83aqwaan7wrrja"; depends=[audio checkmate doSNOW foreach magrittr progress Rcpp RcppParallel RJSONIO]; }; tsna = derive2 { name="tsna"; version="0.3.5"; sha256="0rgzdf60j8ahi0zgypkj7wd7y7ghrkymc48kjfyz9w3ksmrzgqjf"; depends=[network networkDynamic statnet_common]; }; - tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; + tsne = derive2 { name="tsne"; version="0.1-3.1"; sha256="126q6ha25wx9mdsfngzkyp8j2fj81ri1knjdq1iyvwx3q1dwdaql"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-8"; sha256="02qd7ky416yp2l4cfl2yl7ckr2aidkps9cxkk03r9r7c5247c6zh"; depends=[forecast]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tsriadditive = derive2 { name="tsriadditive"; version="1.0.0"; sha256="1zk97vz5ag6j0r8w3b5kgl2cx628jmdy73spmwmsw7x5yc24901d"; depends=[survival]; }; tsrobprep = derive2 { name="tsrobprep"; version="0.3.2"; sha256="0y7h8kh721r859b7y5vxh4q7dmjlx50qcc6pib204x3hhzv1yyrc"; depends=[glmnet MASS Matrix mclust quantreg Rdpack textTinyR zoo]; }; tssim = derive2 { name="tssim"; version="0.1.7"; sha256="154snb0npy8zbkspp475nv9rvv1ls6rbgxz3jr152j79vsiis3ng"; depends=[dsa timeDate tsbox xts zoo]; }; + tstools = derive2 { name="tstools"; version="0.4.1"; sha256="0jvagd64zqaqqch78y7pdxmds5mfyy53qafs8fqzd0d0rzjsks0j"; depends=[data_table jsonlite xts yaml zoo]; }; tsutils = derive2 { name="tsutils"; version="0.9.2"; sha256="0gp8f0a9dn3h4lv38xiw04j832igwhfralzc5vd74r952x7b6hbx"; depends=[forecast MAPA plotrix RColorBrewer]; }; tsviz = derive2 { name="tsviz"; version="0.1.0"; sha256="099ga750kr9hrkd8vaxhz6h4gha6zfr9jzqwrmgms2h2h1a7jxr7"; depends=[dplyr forecast ggplot2 lubridate magrittr miniUI plotly shiny shinyhelper]; }; tsvr = derive2 { name="tsvr"; version="1.0.2"; sha256="1h8yjnw7f8w6m19jh3a518vkzjcmbhl3lk15d1jyhy8p4ajzzjdx"; depends=[]; }; @@ -18217,11 +18275,11 @@ in with self; { ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.8"; sha256="184rfmrd4y63j8i62w8cy7d6cqgvlhj8h6zgjzsvad9l6pq2hmb3"; depends=[diffobj tinytest]; }; - tth = derive2 { name="tth"; version="4.12-0"; sha256="0bwn8xxswkilv0gagh54fiw90pvjzpz6w6ky4prc3mm070plqf4b"; depends=[]; }; + tth = derive2 { name="tth"; version="4.12-0-1"; sha256="0sdk519sx8h2l0ggddkwlnh9llrx4fzmvwzdjrbi2bg8zv2y30x1"; depends=[]; }; ttservice = derive2 { name="ttservice"; version="0.1.2"; sha256="0wsdbxhvxh93qj69mdjfbymsa5y0q1ngj12wvlymcsnayifa420w"; depends=[]; }; ttt = derive2 { name="ttt"; version="1.0"; sha256="12bjhp78162v5y64qxfccaqxgwdqhmd3iwjda6pi7j6zqmy9p0gm"; depends=[Formula htmltools knitr]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; - ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; + ttutils = derive2 { name="ttutils"; version="1.0-1.1"; sha256="01lmnlyj6pn2r73hhr57r9c83h3pw9x506h4dj09wmlgrzv4w30a"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; tuber = derive2 { name="tuber"; version="0.9.9"; sha256="1nnjwn3c0rr90jvkwlh9xs5vc2nl6qzjj958hbddfrkny0w88mnp"; depends=[dplyr httr jsonlite plyr purrr]; }; tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; @@ -18232,8 +18290,8 @@ in with self; { tukeytrend = derive2 { name="tukeytrend"; version="0.7"; sha256="15j7g0drb92rpxq7d0jl9h0hxpi9pbgpvfcxaicrcgypxap3721q"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; }; tumblR = derive2 { name="tumblR"; version="1.2"; sha256="1qili2c9wb6hpjjf7m0gyvdymzls5w4pghjkyi3sbp0q7ayhbh12"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tune = derive2 { name="tune"; version="0.1.6"; sha256="1356w98ljiay8fwa7narr7j5hfbvi69gy03gr7kqiwnfglyksrza"; depends=[cli dials dplyr foreach generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr vctrs withr workflows yardstick]; }; - tuneR = derive2 { name="tuneR"; version="1.3.3.1"; sha256="12nixpqrc5gp7p2clr7ia6jwb0jq2i3brlxiwlp00ixmnm5g1jyd"; depends=[signal]; }; + tune = derive2 { name="tune"; version="0.2.0"; sha256="05gxlsaqv6sjk11r5g4nkdd6hlb3bnfmc29cx4vln1blha37jx4i"; depends=[cli dials dplyr foreach generics ggplot2 glue GPfit hardhat lifecycle parsnip purrr recipes rlang rsample tibble tidyr vctrs withr workflows yardstick]; }; + tuneR = derive2 { name="tuneR"; version="1.4.0"; sha256="1sd0drxzbdy71bh35fccg9ajhpdhdpy0m9nja2lw82p1pzhyl7jn"; depends=[signal]; }; tuneRanger = derive2 { name="tuneRanger"; version="0.5"; sha256="1xf78q8f7sq6w2jjwcw8vz88bmbp8yivydmqygjag58abnhd0356"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2021.1"; sha256="17j308qla2680k0j8cf2c4v1jlsm21z93zglncmw3n0isa7cwjly"; depends=[doParallel foreach iterators numDeriv quantreg]; }; @@ -18247,7 +18305,7 @@ in with self; { tvgeom = derive2 { name="tvgeom"; version="1.0.1"; sha256="1lr2vqgj5jfhzavwd43wcchhbicmf4dqjvyf66rvnjkw3jaig8dm"; depends=[]; }; tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; tvmediation = derive2 { name="tvmediation"; version="1.0.0"; sha256="16djg3ibn1i68lzwby8242qa90347iq1i9ha4nyzacaf7mjd4ysl"; depends=[dplyr ggplot2 kedd locpol]; }; - tvthemes = derive2 { name="tvthemes"; version="1.1.1"; sha256="0j24hhpjab1220bmspd6a0pa2295gpyyrcxs1rxjnsr5vgn90fcq"; depends=[extrafont ggplot2 glue magick scales]; }; + tvthemes = derive2 { name="tvthemes"; version="1.3.0"; sha256="1xpj6jxiqynz8vs5lfymf5hlywm8zpgcycxnlhpvl9g6wfn80ysw"; depends=[extrafont ggplot2 magick scales]; }; twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; twangContinuous = derive2 { name="twangContinuous"; version="1.0.0"; sha256="0bn1i9nid97irn820591ml3556bbmg6pw2qhm9k9vqgnqmnhcfnq"; depends=[gbm lattice Rcpp survey xtable]; }; twangMediation = derive2 { name="twangMediation"; version="1.1"; sha256="16np2zapvm31cglqck35n1v8jpnm24xrdya66jpwnkci51dsfxci"; depends=[gbm lattice latticeExtra survey twang]; }; @@ -18275,7 +18333,7 @@ in with self; { typed = derive2 { name="typed"; version="0.0.1"; sha256="096rzsxjdycf55jx33cxk1284rzb2vcxvp298y4q6v9x0w36php3"; depends=[waldo]; }; typehint = derive2 { name="typehint"; version="0.1.2"; sha256="1n37qgphzf7lckrgfc8w3fq82zrjcvadx034qx8hrmbh4dynsl2s"; depends=[crayon rlist stringr]; }; types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; }; - tzdb = derive2 { name="tzdb"; version="0.2.0"; sha256="1afmav7s29fb5cd920h6vrzg9cvc4jsidfalxpvhlh1b8mfr0df3"; depends=[cpp11]; }; + tzdb = derive2 { name="tzdb"; version="0.3.0"; sha256="0f3h4zaf9f4l371k6nc1mq6z2f9aj1vaf2inni8jnsds3zng16b0"; depends=[cpp11]; }; tzupdater = derive2 { name="tzupdater"; version="0.1.2"; sha256="0s1simvn76m569iq24qb3w6xli0202cjf1jr3a4qy58fs4sda2kv"; depends=[]; }; u5mr = derive2 { name="u5mr"; version="0.1.1"; sha256="16znlmxanhg1m6fq28z62jv033fxgr4njzz50hgskprvgvx8svkj"; depends=[lifecycle]; }; uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.2.0"; sha256="1nccgkxv57inhgvgmhwm4fr8cp28sj8n83za5gam9xx1f42mzsqk"; depends=[ChemmineR usethis]; }; @@ -18291,22 +18349,22 @@ in with self; { uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; - udpipe = derive2 { name="udpipe"; version="0.8.8"; sha256="0bjl3l652lmq6yyhpc4nyhqgjb0drzk4ppmx4i9m0rrwrf997d9b"; depends=[data_table Matrix Rcpp]; }; - udunits2 = derive2 { name="udunits2"; version="0.13.2"; sha256="0sarkw5ciafiaq1haam8d8w0cmai63wrw2m4rcbjfa5k0648j07f"; depends=[]; }; - ufRisk = derive2 { name="ufRisk"; version="1.0.3"; sha256="0gqc5faf96pj8pgwddvcbgbp52sai9mscaxp20gx2xgx7zp66l89"; depends=[esemifar fracdiff rugarch smoots]; }; + udpipe = derive2 { name="udpipe"; version="0.8.9"; sha256="1pdxfr3523imyygm26zhisy3x0a8ay6wd4ndda93ic0lqxb5lapd"; depends=[data_table Matrix Rcpp]; }; + udunits2 = derive2 { name="udunits2"; version="0.13.2.1"; sha256="00prsy8m41v1camcsz94d7gm8qab2mdnwl3x0dyhz4r49b02jm4z"; depends=[]; }; + ufRisk = derive2 { name="ufRisk"; version="1.0.4"; sha256="1syyi3in97xllm0mx62v05ahnhpmb708hh2q5qbj0yfkrs69c2z1"; depends=[esemifar fracdiff rugarch smoots]; }; ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; ugatsdb = derive2 { name="ugatsdb"; version="0.2.2"; sha256="0f5fgys80b5nlj5f8jadh5jpylhhb5hsknrsspfac5amncmb0yyv"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; ui = derive2 { name="ui"; version="0.1.1"; sha256="15hcdzaj75ip6j7yglx8rqhp4y3yf3aw5cpbjgk1mjr4cya7lvzi"; depends=[Matrix maxLik mvtnorm numDeriv]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.3.1"; sha256="1faggg8hiqw4pblq5r3m9wi3x5m6kbjq0flf88mqa993v9rpdrf6"; depends=[rmarkdown xaringan]; }; uk2us = derive2 { name="uk2us"; version="0.1.0"; sha256="1iskjfifksx9gh94zwh4kk7l984804fidzg4j1k2ww9a4j63rk19"; depends=[]; }; - ukbabynames = derive2 { name="ukbabynames"; version="0.2.0"; sha256="1yggm3cv32bbshkmqvzd6pdgclk7w329dd1ghslicllaj98cni8k"; depends=[]; }; + ukbabynames = derive2 { name="ukbabynames"; version="0.3.0"; sha256="1akmg1sj5438nsbjp2xqlrkgsw772j1a1shnn1jqh25d1q3lb0nz"; depends=[]; }; ukbtools = derive2 { name="ukbtools"; version="0.11.3"; sha256="1j5p9ypn3s781582all64kvywih1ry0lqsh1zirr35g7r46fy783"; depends=[data_table doParallel dplyr foreach ggplot2 magrittr purrr readr scales stringr tibble tidyr XML]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.21"; sha256="1acl04bm8f2hgi26mpmzcwp44yv9zxarzw4r4k20b367k8g9rh8a"; depends=[httr XML]; }; uklr = derive2 { name="uklr"; version="1.0.2"; sha256="1x5lfzb0a64k84dscdj61kcibww8mizf9w62anmb207f8dggj7lg"; depends=[curl httr jsonlite tibble]; }; ukpolice = derive2 { name="ukpolice"; version="0.2.2"; sha256="1dwwixhiarlpdss7rhiamzcsl1k2yphgmjzh7wn2my4vxj06817l"; depends=[httr jsonlite purrr snakecase tibble]; }; ulid = derive2 { name="ulid"; version="0.3.0"; sha256="0xxkqrnlz3pkb3s1gacfzqav54w97gc0w8rh0fn1qy5rkmg2bplv"; depends=[Rcpp]; }; - umap = derive2 { name="umap"; version="0.2.7.0"; sha256="191vpy84s0bar06y9z1qx43x2kc4qp7lmrcmd0cvz2pnzq722jab"; depends=[openssl Rcpp reticulate RSpectra]; }; + umap = derive2 { name="umap"; version="0.2.8.0"; sha256="0aiarnzc8gl932gi8fxd9f9rshaiwh9vj570l135fkiaja3q2wap"; depends=[Matrix openssl Rcpp reticulate RSpectra]; }; umiAnalyzer = derive2 { name="umiAnalyzer"; version="1.0.0"; sha256="147x48mr9mj0njwbz39876795rninvk89zm9immkppdm4s5g1ghf"; depends=[BiocManager dplyr DT forcats ggplot2 gridExtra magrittr pheatmap plotly readr Rsamtools scales shiny shinydashboard shinyFiles shinyWidgets stringr tibble tidyr viridis]; }; ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; umx = derive2 { name="umx"; version="4.10.50"; sha256="11mhry3hv7fhs5lwgww3g6200knw3fgah42j08glk81k9braswzm"; depends=[cowplot DiagrammeR DiagrammeRsvg ggplot2 kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl rsvg scales tibble xtable]; }; @@ -18324,15 +18382,15 @@ in with self; { uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; - uniformly = derive2 { name="uniformly"; version="0.1.0"; sha256="0n3s0x05v4d79jn51nwj06gm074rgy269f57y2q5z0bkwyp6yc7n"; depends=[pgnorm]; }; + uniformly = derive2 { name="uniformly"; version="0.2.0"; sha256="1xfwnklzmz72kp5qsb5zh3p6lwngpiaw5b4drjd41h9xvxdb3dyd"; depends=[pgnorm]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; unikn = derive2 { name="unikn"; version="0.4.0"; sha256="0pqkb48rsjl9zny0y1plcnfvzaaqy2cwpgii2pdhh4rfg2ps2n4l"; depends=[ggplot2]; }; unine = derive2 { name="unine"; version="0.2.0"; sha256="051dk8fss19h4d9815a7994krr1s3n5q0pxq9gir6zns0vvn05pw"; depends=[Rcpp]; }; uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; unisensR = derive2 { name="unisensR"; version="0.3.3"; sha256="1pqfb8i3rj64l9hh1bn9mm78wlfqphgrlp7zrydznqy88f4jwgvy"; depends=[hexView vroom XML]; }; - uniset = derive2 { name="uniset"; version="0.2.1"; sha256="1l7a3qv7sa1kbk5r2qxbc0b69s80l0a56g93x1fv6lyx33ghkfb6"; depends=[easycsv]; }; + uniset = derive2 { name="uniset"; version="0.3.1"; sha256="1lpwsx1l6x186aj7wl5kvfmc5mp4g95p5h69alg8dn1sns84zqjs"; depends=[easycsv]; }; unitedR = derive2 { name="unitedR"; version="0.4"; sha256="0h4i814awb8419693jz3x5cyhs2x6y5flmz339bg6ivmg13d9h3s"; depends=[plyr]; }; - unitizer = derive2 { name="unitizer"; version="1.4.17"; sha256="1fyqsqnqm0jk31qd2kny2pi7j5z0a4w9lyxnpmg98bc0zi3w6fbq"; depends=[crayon diffobj]; }; + unitizer = derive2 { name="unitizer"; version="1.4.18"; sha256="1higz77mxyci56h3z5pizkbyqdbkf65lfxf8zm36gi1h04czxrnr"; depends=[crayon diffobj]; }; units = derive2 { name="units"; version="0.8-0"; sha256="06mjprqi06xprj6185k5cmrrdl025x0pd1r6a4x3s74ciq9zwilw"; depends=[Rcpp]; }; unittest = derive2 { name="unittest"; version="1.4-0"; sha256="1wyiikccnkw8fzrjrb2a80lw2xyiii4zb0hrbzfszy2bd6prqxx4"; depends=[]; }; univOutl = derive2 { name="univOutl"; version="0.3"; sha256="1hhpxrpmp2wbrynx9xjndnp2sccirgky2x6ksd6yk6phmk0rbzjp"; depends=[Hmisc robustbase]; }; @@ -18393,7 +18451,7 @@ in with self; { utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; - uuid = derive2 { name="uuid"; version="1.0-3"; sha256="0il35jnci537r8zkinyiy5jp5q530p85ln6dswpj884zclrlcvj5"; depends=[]; }; + uuid = derive2 { name="uuid"; version="1.0-4"; sha256="08j3ylf49l9qslhlcxvix3mqw6hh8kxainnklv0qmwmwj6q6i5i8"; depends=[]; }; uwedragon = derive2 { name="uwedragon"; version="0.1.0"; sha256="00rrklym9ms74ad58cbn4xkibp8k5d12kcrnb68x7b27grvgfnqf"; depends=[gtools]; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.11"; sha256="06ylzxmdh8jipbrzgqaiivd2lnqmbcva41cyvc0iyals6vqr1ksg"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; @@ -18409,7 +18467,7 @@ in with self; { valhallr = derive2 { name="valhallr"; version="0.1.0"; sha256="1lgdcvbk5g8xq9b18aqfq434cvdcshl3b6s28sx4r3jb8fxkia26"; depends=[Cairo dplyr geojsonio ggplot2 ggspatial htmltools httr jsonlite leaflet magrittr purrr rlang sf stringr tibble tidyr]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; validata = derive2 { name="validata"; version="0.1.0"; sha256="01ghnkkhqgjllpwdvphcqymps7jq3wd919rplk092iiwwq1mpb9m"; depends=[badger BBmisc data_table dplyr framecleaner gtools janitor listviewer magrittr purrr rlang rlist scales stringr tibble tidyr tidyselect]; }; - validate = derive2 { name="validate"; version="1.1.0"; sha256="0n9h8l0ylpygn1aza0j5dlabvdshc1flsn4p0m064wvpvx3vx5hi"; depends=[settings yaml]; }; + validate = derive2 { name="validate"; version="1.1.1"; sha256="0bbrlc5lfis3ksg4fsd8ldwzr9lqh45w51g83vys9l3zhmmxcagb"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatedb = derive2 { name="validatedb"; version="0.1.4"; sha256="0lq0d0hcszd2jgip9m5j07lgbc279nxryz5drzv2qaap357ic9l1"; depends=[dbplyr dplyr validate]; }; validatetools = derive2 { name="validatetools"; version="0.5.0"; sha256="10wardp2c70zx5ii940sjql3xh5p3vqxv4ayyifhhlr8vzvr5cj0"; depends=[lpSolveAPI validate]; }; @@ -18446,7 +18504,6 @@ in with self; { variosig = derive2 { name="variosig"; version="0.3-1"; sha256="09cxigii0sj78yqd18p4mm9jjqvd1k2cgjy43pxpmqdhia0q2pmv"; depends=[gstat sp testthat]; }; varitas = derive2 { name="varitas"; version="0.0.2"; sha256="16y0fcisdf4pypwqshy9c45v57axa25k8cpp1pr2ij95zycs3g1k"; depends=[assertthat doParallel dplyr foreach magrittr openxlsx stringr tidyr VennDiagram yaml]; }; varjmcm = derive2 { name="varjmcm"; version="0.1.1"; sha256="1xgy3n57pxhv6wrsw9h4dranxbw6hdpm1f9ra3kwlzrpz5c3289x"; depends=[expm jmcm MASS Matrix]; }; - varrank = derive2 { name="varrank"; version="0.4"; sha256="03zyv1cgrdnj7gzrp1ag0sqpxikrlsj3gg4x78gp1wxqwzq7aizx"; depends=[FNN]; }; vars = derive2 { name="vars"; version="1.5-6"; sha256="1ggkmds5ibww61mkc50bzh75py4n2g9bd6wqb3nvfw9zn58k7znx"; depends=[lmtest MASS sandwich strucchange urca]; }; varsExplore = derive2 { name="varsExplore"; version="0.3.0"; sha256="0d18wqq7fbs5ljdphsdgqmv8ab0wrzzykjhf4lqksi7n78s1fa2r"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; varycoef = derive2 { name="varycoef"; version="0.3.1"; sha256="0vhv2rraq6iqhqhjp5vdml1ppyr2xrqd97vgk4h0izk4v8r0l69k"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply RandomFields smoof sp spam]; }; @@ -18464,11 +18521,11 @@ in with self; { vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="1.0.2"; sha256="0d7g67adnjhhaikz61nc3ivl8pzyvsk8ah0a34d8wgxknfva29sb"; depends=[base64enc cpp11 crul httr R6 rprojroot urltools webmockr yaml]; }; vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; - vctrs = derive2 { name="vctrs"; version="0.3.8"; sha256="1c8v5lmap6iq4jpi7p3w05hsv2dq7rjg057pvnfyc5d1xmsqnkkz"; depends=[ellipsis glue rlang]; }; + vctrs = derive2 { name="vctrs"; version="0.4.0"; sha256="0bslr22jnnwxx45s1a19az6saqf2svi8vkjf64pnpc6rma4ygpl9"; depends=[cli glue rlang]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.1"; sha256="1jxqwg7k8ibzzdx8axhn2dx27j60qj0dlmczbfalll841ggigb45"; depends=[ggplot2 gridExtra proxy quantreg]; }; - vdiffr = derive2 { name="vdiffr"; version="1.0.2"; sha256="1zjwjw8lqqnx7cxj2aik5rn1g67zsyf0bq08yfwwmsi7v2x6ly3x"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; + vdiffr = derive2 { name="vdiffr"; version="1.0.4"; sha256="1z8nn8yh6jfzb9r7ylmigwh1p30lrclqm6khmp323qqphzmzfdwy"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; vdra = derive2 { name="vdra"; version="1.0.0"; sha256="1ldl3wm55a5ywc5398lzky6l6x5a9djxwrqnrd570fg4iq6d30l1"; depends=[]; }; vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; @@ -18487,13 +18544,13 @@ in with self; { vembedr = derive2 { name="vembedr"; version="0.1.5"; sha256="1hmwgrp9vj7qwmsvnvgry8h707kj53wp5chpxqsbgxi9jryabpc0"; depends=[assertthat glue htmltools httr lifecycle magrittr stringr]; }; venn = derive2 { name="venn"; version="1.10"; sha256="1r31z6s384mcrjqxm9818mvc7v23ir26wcix5lc831fwihajlhk5"; depends=[admisc]; }; vennLasso = derive2 { name="vennLasso"; version="0.1.6"; sha256="0maydvx0qhdn5alqzqxjn485y9hw9qdr1xvgkmgwnjq59vni6d31"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; }; - venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; + venneuler = derive2 { name="venneuler"; version="1.1-3"; sha256="0znr5l41mpappv2agji4nxr42vydhd35jbmjwzwapgahff2arlr1"; depends=[rJava]; }; vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; }; verbalisr = derive2 { name="verbalisr"; version="0.4.0"; sha256="17zq2qc361kmd32pfzqgxpgw2z4z1iq831cq85fffdc3nvl3wwx4"; depends=[pedtools ribd]; }; verhoeff = derive2 { name="verhoeff"; version="0.4.0"; sha256="0kpxpl5s5342ajg22cwb7y9ks240drp37q1g67n19krdy6ih14kz"; depends=[]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; - versionsort = derive2 { name="versionsort"; version="1.0.0"; sha256="0inyzs6y4dsxwyfpwl90rqx11dyc3j3n4347zyqvyqp5icg7x5m0"; depends=[]; }; + versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetiver = derive2 { name="vetiver"; version="0.1.3"; sha256="1yn4vhnkgqqgzkbg2qjpf8n3pm2xdx2p8plxb4y1xffbpzsspjan"; depends=[butcher cli curl generics glue hardhat httr jsonlite lifecycle pins plumber purrr rapidoc readr renv rlang tibble vctrs withr]; }; @@ -18512,7 +18569,7 @@ in with self; { vimp = derive2 { name="vimp"; version="2.2.5"; sha256="13461pcvyc6rad1rf2ymmkyzcwjxw7g4fs8qd51baljhjnjmifv0"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; - vinereg = derive2 { name="vinereg"; version="0.8.1"; sha256="0aqf6phgbs74zzjylkya9mj6ak9h53jji037p5m225wgm11nlq50"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; + vinereg = derive2 { name="vinereg"; version="0.8.3"; sha256="0d1ibrhjsbjaaz2cd9lg76cjplkys716i689khzaiv4sgbjhwdh1"; depends=[assertthat BH kde1d Rcpp RcppEigen RcppThread rvinecopulib wdm]; }; vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinplotter = derive2 { name="violinplotter"; version="3.0.0"; sha256="02hyc85bmpc4lzpy4yay73gz4v00wns1ghkkf9sljl3kdgybmyi2"; depends=[]; }; vioplot = derive2 { name="vioplot"; version="0.3.7"; sha256="1dmdasp3jldc41233z6r08w3j76vyyp9m3jrj7n4ahk48yd5siq6"; depends=[sm zoo]; }; @@ -18529,7 +18586,7 @@ in with self; { visStatistics = derive2 { name="visStatistics"; version="0.1.1"; sha256="0lp6sf2wrjjp1zh77yhlgr9sfpls54z0bny0l36v98ik4qykky0f"; depends=[Cairo multcompView nortest vcd]; }; visTree = derive2 { name="visTree"; version="0.8.1"; sha256="1l07zfr2hagjpdxfw5290wa3ki4bl7iqxrrhda0d1bp3wmwfz0ai"; depends=[colorspace partykit rpart]; }; visa = derive2 { name="visa"; version="0.1.0"; sha256="1mx7nbbpxs4fdp781a75qvffa42dx2n6anslbfs9bnprmvzmljqr"; depends=[ggplot2 ggpmisc Matrix RColorBrewer reshape2]; }; - visachartR = derive2 { name="visachartR"; version="2.0.1"; sha256="0kwj8dq6r3rbv3s01dpgnw44ngpchx4rxmykmwff949yck691952"; depends=[htmlwidgets]; }; + visachartR = derive2 { name="visachartR"; version="2.1.0"; sha256="0csm0gb4f76g1c7c55f5hlgz04svxk4mz1scczayhxfi8j3wm1yw"; depends=[htmlwidgets]; }; visae = derive2 { name="visae"; version="0.2.0"; sha256="0ycwb380z8nb646w7w42952lwvdi8prmph7yv1lraswvp4wjfx3p"; depends=[ca dplyr DT ggplot2 ggrepel magrittr rlang shiny shinyjs tidyr]; }; viscomplexr = derive2 { name="viscomplexr"; version="1.1.1"; sha256="1b45yi5xv4vq52pfa064ll3ghxgkwpbknzq94gg60vcvb7spd0if"; depends=[doParallel foreach plotrix Rcpp Rdpack scales]; }; visdat = derive2 { name="visdat"; version="0.5.3"; sha256="1ikqp29nncbw1xlwyb9dqqgcdk9q0bs3wxhnhnjpb11vcjv7cz2j"; depends=[dplyr ggplot2 glue magrittr purrr readr tibble tidyr]; }; @@ -18540,7 +18597,7 @@ in with self; { visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; visualpred = derive2 { name="visualpred"; version="0.1.0"; sha256="19jq9h9kiv4vbzqz8zrv5gqb1bprq5jy7mcxvdwpfnna2rja6q4z"; depends=[data_table dplyr e1071 FactoMineR gbm ggplot2 ggrepel magrittr MASS MBA mltools nnet pROC randomForest]; }; - visvow = derive2 { name="visvow"; version="1.3.3"; sha256="01mpiyc893sx8zhx6ddzhdqcgsssz516s4wm0sfkh5fpaz6h1mn5"; depends=[Cairo DT formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice WriteXLS]; }; + visvow = derive2 { name="visvow"; version="1.3.4"; sha256="0amqmkjf6iiif80bpafdx5mgj6qklr935wazr3wiq2wsvpirkdck"; depends=[Cairo DT formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice WriteXLS]; }; visxhclust = derive2 { name="visxhclust"; version="1.0.0"; sha256="09849fmsm62adf39qk3np787g7v3vbg5yncs20qrclgv6iam3w51"; depends=[bsplus circlize cluster clusterCrit ComplexHeatmap dendextend dplyr DT dunn_test fastcluster ggplot2 kableExtra knitr patchwork RColorBrewer readr shiny shinycssloaders shinyhelper tidyr]; }; vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; }; vitae = derive2 { name="vitae"; version="0.5.1"; sha256="0j35azyrrnr1nvw76axqa0bvs6nsp7pw9gwkyfqnp6383r5hlg4i"; depends=[dplyr glue jsonlite knitr pillar rlang rmarkdown tibble vctrs xfun yaml]; }; @@ -18552,7 +18609,6 @@ in with self; { vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; }; vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; - vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.0"; sha256="1vxlqfcdkwajz9r6rmz48x87csl6d7dqshabhgwnvgvy206jh3b7"; depends=[forecast nnfor vmd]; }; vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.3"; sha256="1qxcbmf71xwlmi5wyjs3a86ywjd0cj6f86kyq5bpw4ykn797kciw"; depends=[curl jsonlite]; }; vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; @@ -18560,10 +18616,10 @@ in with self; { volcano3D = derive2 { name="volcano3D"; version="1.2.0"; sha256="10wfvqz7jf92rzhg8ys55mgv31rn2b85lji813jg2wm4k94g95cm"; depends=[ggplot2 ggpubr ggrepel plotly]; }; volesti = derive2 { name="volesti"; version="1.1.2-2"; sha256="1814y7n0jwbc98nznrzl6apgg15whb32phb9m3lvrcx5h9xv3la1"; depends=[BH Rcpp RcppEigen]; }; volleystat = derive2 { name="volleystat"; version="0.2.0"; sha256="0n1r0bvvmba21cs3qgpnw9jxpgl2n82fhxa40sa1w2gav5rch5i6"; depends=[]; }; + voluModel = derive2 { name="voluModel"; version="0.1.3"; sha256="0967q6h6k9383pj86366w2hb1jf3g2i5xp44x62ms193nb7ycrc7"; depends=[dismo dplyr fields ggplot2 ggtext latticeExtra rangeBuilder raster rgeos sp terra viridisLite]; }; voronoiTreemap = derive2 { name="voronoiTreemap"; version="0.2.0"; sha256="1wvnqdrvba4ss4f3k8gzb720irdq2brv2aaq16ywifv8fnjf02r3"; depends=[data_tree DT htmlwidgets rlang shiny shinyjs]; }; - vortexR = derive2 { name="vortexR"; version="1.1.7"; sha256="06i2rqbc3h2kv8jjrdlrg03xrzb3yiyzpnv2rvlkjcnn46f84bgf"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; vortexRdata = derive2 { name="vortexRdata"; version="1.0.5"; sha256="0b47q3aslz4110a1bfaa103i098y2ngzrjh01rwasq3gd6xbif9n"; depends=[]; }; - voson_tcn = derive2 { name="voson.tcn"; version="0.2.4"; sha256="18h51krjjnvgplgyxyjhm32q602la9ip1wsf37vs41vv591k8ylv"; depends=[dplyr httr jsonlite magrittr openssl rlang stringr tibble tidyr]; }; + voson_tcn = derive2 { name="voson.tcn"; version="0.3.3"; sha256="1gn715r450akpnzg4gb2d9kkrscazy0mx0719gmpfp8bwrjxln5h"; depends=[dplyr httr jsonlite magrittr openssl rlang stringr tibble tidyr]; }; vosonSML = derive2 { name="vosonSML"; version="0.29.13"; sha256="0xajffifapn0sfnp39p8iv6hdxindzi7vywcwhla9h2hmvraad6w"; depends=[data_table dplyr Hmisc httpuv httr igraph jsonlite lubridate magrittr purrr RCurl rlang rtweet stringr textutils tibble]; }; vote = derive2 { name="vote"; version="2.3-2"; sha256="12kvz83ncansrsvw4mrws6fafn9fy6c0nvqvknrzl08kv290c9dr"; depends=[data_table fields formattable knitr]; }; voteogram = derive2 { name="voteogram"; version="0.3.1"; sha256="12xv0c3g4vr23c8adkk8z7m7sx31w5mjvdg9h4qbvaimb99p2r7z"; depends=[dplyr ggplot2 jsonlite scales]; }; @@ -18593,7 +18649,6 @@ in with self; { vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vueR = derive2 { name="vueR"; version="0.5.3"; sha256="0am4iwgadi9c9f7zm5zx3nrzyhy7w1qgp9rkyypzwb6bicjjb9cz"; depends=[htmltools htmlwidgets]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; - wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; wCorr = derive2 { name="wCorr"; version="1.9.5"; sha256="10mnrs5ymc3ms1z5vs0h05rjq1642n3asvm77x7lxq9qwx67s3vn"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; wINEQ = derive2 { name="wINEQ"; version="1.0.1"; sha256="0vsi930gp7w2ddqfy7dw82w89v7vrrv8x5zg9j8bhiz4kaf53153"; depends=[dplyr sampling]; }; wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; @@ -18608,7 +18663,7 @@ in with self; { waiter = derive2 { name="waiter"; version="0.2.5"; sha256="0ya92qr25ssfkzn888b7rr8rn0304f3gz4h4pnc2a95rknbmxhls"; depends=[htmltools R6 shiny]; }; wakefield = derive2 { name="wakefield"; version="0.3.6"; sha256="1rssh6v8m6fim2pvm4cjw8cbni77bv5qp0rwi6vwdl3jhi5zws7n"; depends=[chron dplyr ggplot2 stringi]; }; wal = derive2 { name="wal"; version="0.1.0"; sha256="0n81c2i2wzmy33kk1k4zjjgv1irh8xqw05clif8n86qr4m0a01sv"; depends=[freesurferformats imager jpeg png spacesXYZ]; }; - waldo = derive2 { name="waldo"; version="0.3.1"; sha256="16q1xjbl9g04l1r1x3nid9hmz1sa35q6j33bigdzh4y4zcd8qb7c"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; + waldo = derive2 { name="waldo"; version="0.4.0"; sha256="1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; walker = derive2 { name="walker"; version="1.0.4"; sha256="0qfvzg6wchl3933f2zahzl665badyj12161h0rz8a92rji004p8i"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; wallace = derive2 { name="wallace"; version="1.1.3"; sha256="0q9nppyiijzbmdi6dvgnh8l8i1vassqcl5wc7bv08hidxbkw3pqs"; depends=[dismo dplyr DT ecospat ENMeval jsonlite leaflet leaflet_extras magrittr raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs sp spocc spThin zip]; }; @@ -18636,7 +18691,7 @@ in with self; { wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="3.1.2"; sha256="0a9qhcgf0l3zpwq8m476py94wb4rasy6a8xj302y6kwg3gvh1smm"; depends=[plot3D RColorBrewer waveslim]; }; waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; - waves = derive2 { name="waves"; version="0.2.3"; sha256="0k79mdvr08hbncxr7920blfkjn2pwrsi6qbcqk4bafs8s9c361bq"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; + waves = derive2 { name="waves"; version="0.2.4"; sha256="128q1l0ishdgpa33zh77xpi79nvziix8swq1rwyawnznl9ybs29w"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.2"; sha256="0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; @@ -18647,11 +18702,12 @@ in with self; { wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; wcde = derive2 { name="wcde"; version="0.0.3"; sha256="0nj3p2wbx2canpn1wfm6jw8p5ymwfyihvyy8hm9svmw5xk10kir8"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; }; - wdm = derive2 { name="wdm"; version="0.2.2"; sha256="1pidlfp67x3wnmkp0qgna4vz29qx09xsy7gfbqzrjqkdi7q1dihi"; depends=[Rcpp]; }; + wdm = derive2 { name="wdm"; version="0.2.3"; sha256="0fsr5kskg71bwhc5zzhalm29cc7z9p9y8wdmgz2bisgry3v880az"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; + wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.3"; sha256="03y3mglyw6qqj1c87lj7y87zg5jx6bjbjbnxjb7s4hpibh4mqhgj"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; }; wdpar = derive2 { name="wdpar"; version="1.3.2"; sha256="0fgypgv6dl22ni90m7g2fsw56b8ml9pvxrqkwkzmxnlb8hmg0r1k"; depends=[assertthat cli countrycode curl httr lwgeom progress rappdirs RSelenium sf sp tibble wdman xml2]; }; weaana = derive2 { name="weaana"; version="0.1.1"; sha256="1wjvn78fkgc28ag1idy7h6sm0rvl57wbqdbxgbl3g5xv844vh8ls"; depends=[dplyr lubridate magrittr reshape2 rlang settings tibble]; }; - weakARMA = derive2 { name="weakARMA"; version="1.0.2"; sha256="1i4hkjjx35jkvg7jbiv1szmlnj1nx1s77sa7361407i7wmf41xkf"; depends=[CompQuadForm MASS matrixStats vars]; }; + weakARMA = derive2 { name="weakARMA"; version="1.0.3"; sha256="16dzyw7jiyqv9hd94dff9lxhqv9rwib1xs1km0xfqcy6xa2jhw8w"; depends=[CompQuadForm MASS matrixStats vars]; }; wearables = derive2 { name="wearables"; version="0.8.1"; sha256="0fjf43cgna1mg4mgg98kqhhl88yfhrr57rln2z6xm6d6bj73q5zn"; depends=[dplyr futile_logger ggplot2 kernlab lubridate magrittr padr R_utils RHRV signal varian waveslim xts]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.3"; sha256="14w7kkja3a1zmdc7l084iprx1czqgdfjzjc29wdlwzmaiq02c4d3"; depends=[ggmap lubridate RJSONIO XML]; }; @@ -18703,7 +18759,7 @@ in with self; { whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; whippr = derive2 { name="whippr"; version="0.1.0"; sha256="1anrbrb9bp9kll70wjc1861incmjp85w1cw7y9r7pah26ajvxm80"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr usethis zoo]; }; whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; - whitebox = derive2 { name="whitebox"; version="2.1.0"; sha256="17g2kq21bmgq3ywhld14gxrns5l1ghahdi4vim849ybi703x37xn"; depends=[]; }; + whitebox = derive2 { name="whitebox"; version="2.1.2"; sha256="1lf4w36wl2s5hcgbc718yln204dqnvhbkr5w05i56mfpazrw18cg"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.3.0"; sha256="13c06sk4n2821pskqi8vk61khyhswddcir9qr8zy15czn5id3i1j"; depends=[corpcor]; }; whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; @@ -18716,6 +18772,7 @@ in with self; { widyr = derive2 { name="widyr"; version="0.1.4"; sha256="1adshr1x03ww7dgxzfgy38hi3ggv4rpar2ib35j4dr3s4lyjbdwg"; depends=[broom dplyr gapminder Matrix purrr reshape2 rlang tibble tidyr tidytext]; }; wiesbaden = derive2 { name="wiesbaden"; version="1.2.5"; sha256="04xr757lhcfafcc8xfcbqrg982ifig50lx1khw718kzydf7xwr7w"; depends=[httr jsonlite keyring readr stringi stringr xml2]; }; wig = derive2 { name="wig"; version="0.1.0"; sha256="0gj8sxd5903h0rizd260ffskarywkvf87ck4ixf8gb1z1vgqf8i4"; depends=[dplyr magrittr stringr tibble]; }; + wikiTools = derive2 { name="wikiTools"; version="0.0.6"; sha256="1h0xi7vw2vzmarxfx0gdy895sh53mz4gj4zwrpynwc9d8cppx50q"; depends=[httr jsonlite ratelimitr WikidataQueryServiceR WikidataR]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; wikifacts = derive2 { name="wikifacts"; version="0.4.2"; sha256="1fw1chha6mcrmv1f9rjg01g84bgzkgf1h76l926brjs5gsn4i414"; depends=[magrittr rvest xml2]; }; wikilake = derive2 { name="wikilake"; version="0.6.0"; sha256="1zz5v6kfg5blpz9kl6pz4z9xqs8xpcklncq4k8996hjn4a8mpvyz"; depends=[dplyr maps rvest selectr sp stringi stringr tidyr units WikipediR xml2]; }; @@ -18729,7 +18786,7 @@ in with self; { wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; - winch = derive2 { name="winch"; version="0.0.7"; sha256="0h9xf4qpc1xk04q92dn4n1pjvlwz2sxg0rcv6nkwyp9qj67m6h88"; depends=[procmaps]; }; + winch = derive2 { name="winch"; version="0.0.8"; sha256="0qpk9a40gv88wl1y5qa7fpvwjqnlm6jx2rh50r3fipdilchhzg0f"; depends=[procmaps]; }; windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-3"; sha256="1g5z9kg5ws9cdixky2y0c7dw3f7lmh3ykjxrh3jjmkm75gzgs7p0"; depends=[lubridate]; }; @@ -18769,10 +18826,9 @@ in with self; { wordspace = derive2 { name="wordspace"; version="0.2-7"; sha256="0hrjv5mag7gwl4wj7np248sdyns5i623wl37b11hlgalhbmlypyf"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; workboots = derive2 { name="workboots"; version="0.1.0"; sha256="17j4vz58i645br6pb8b75kk9jib44vs2zjgfc3slj3g39my7n01b"; depends=[assertthat dplyr generics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; - workflows = derive2 { name="workflows"; version="0.2.4"; sha256="1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab"; depends=[cli ellipsis generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; - workflowsets = derive2 { name="workflowsets"; version="0.1.0"; sha256="0596hb17mshpag3vjy2wl6fi2mdw54i9gc5za10vzy8vpkigb9jy"; depends=[cli dplyr generics ggplot2 hardhat lifecycle prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; + workflows = derive2 { name="workflows"; version="0.2.6"; sha256="0xhc1j25fjipw8hvcpdbvfm640kp0flwvifj5f7g4n6b3wb8cm6a"; depends=[cli generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; + workflowsets = derive2 { name="workflowsets"; version="0.2.1"; sha256="0q42nhnw0mbivadcfb07v71fp39x8fcnjipvn5l5yhjzc56cfxi8"; depends=[cli dplyr generics ggplot2 hardhat lifecycle prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; - worldfootballR = derive2 { name="worldfootballR"; version="0.4.10"; sha256="01fdrz94wys8kkpz6sdrj3iwi00jqkmycb7f6zcg6k1hhyizfqx6"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tidyr withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.5"; sha256="03dc93b6akah0pf36h0327jb65slsb3bypyv57cnkyxwyvni6w4s"; depends=[doParallel dplyr foreach leaflet openair purrr readr tidyr]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; @@ -18788,8 +18844,8 @@ in with self; { wppExplorer = derive2 { name="wppExplorer"; version="2.3-4"; sha256="1pbmjg6y543aih8mxf9njfwpm090virhgqf8w0a5yx0jdfjwmz04"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2019]; }; wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; - wrGraph = derive2 { name="wrGraph"; version="1.3.0"; sha256="1zw9c3dl5lwksggvxsch1a9brzy7a5m6yi513h4fxf31njpc5s7g"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.8.1"; sha256="0bhdrjq2b26jvzgg5fchp1mvlr7rvqyx1imdgz25k853hk915cl2"; depends=[MASS]; }; + wrGraph = derive2 { name="wrGraph"; version="1.3.1"; sha256="128qhrv2zkl8hl906gf7snqkl4gic41brawcy3a6aq8c4j1dxjvm"; depends=[lattice RColorBrewer wrMisc]; }; + wrMisc = derive2 { name="wrMisc"; version="1.9.0"; sha256="07zf6jp62fdw5lj5r4zl17d26bc11q9qlsn0ljav6gyddsywd0p6"; depends=[MASS]; }; wrProteo = derive2 { name="wrProteo"; version="1.6.0"; sha256="0iq75zdip51aw8y37ckah1mddm69cp0lds2cj0xaavrdbaarww49"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.7"; sha256="0gap15hinsgfjrxajr9kvs0rp76gl5kk2dqs92s9mfyh10kxxqpa"; depends=[dplyr magrittr rlang tidyr]; }; @@ -18804,12 +18860,11 @@ in with self; { wsjplot = derive2 { name="wsjplot"; version="0.1.0"; sha256="1vgf823j3ychdnvg4nq59ah4rkv5lpwbg0r7sijir2b18sgxsrbi"; depends=[dplyr ggplot2 magrittr scales stringr]; }; wskm = derive2 { name="wskm"; version="1.4.40"; sha256="0x5nc3bwqawx0k95v088dsx83dm7lw5lkryjvq6bl57bgrcn7n0l"; depends=[fpc lattice latticeExtra]; }; wsprv = derive2 { name="wsprv"; version="0.1.0"; sha256="0l2c2zv6ypqqynaj9fxdwgwb0drm27zylbk9irhxxm2bp55s2pdy"; depends=[glmnet mnormt]; }; - wsrf = derive2 { name="wsrf"; version="1.7.22"; sha256="1azpy98k7z0ag9xnq1myxb67b6bdl1z0iyn0qrrsrn92025pqy8q"; depends=[Rcpp]; }; + wsrf = derive2 { name="wsrf"; version="1.7.27"; sha256="1pw4z6a91yyx0j2wnf4y29smdxan1ws0l2jgvqckfqmx5y101czk"; depends=[Rcpp]; }; wsyn = derive2 { name="wsyn"; version="1.0.4"; sha256="0wq07n69l52rs0ddl1r3ml5jh5nflsg9mddvc3dxjdpd00mgbxnl"; depends=[fields MASS]; }; wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wv = derive2 { name="wv"; version="0.1.1"; sha256="06xf3c97pjhln1v31waj8rmp4r0y2kp6v2x10pbpvi8m0nf5zfs1"; depends=[coda Rcpp RcppArmadillo simts]; }; - wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.21"; sha256="1033kz6zhbhd09dh40gp03dfy2kf9zskqh942i06jx1z2dvx3vvi"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.23"; sha256="1cxzh5yp6y2r5n6qkhb4g4dkbyw7mdnsfh883bhksk527ra4qaln"; depends=[crayon data_table R6 stringr tidyr]; }; @@ -18822,7 +18877,7 @@ in with self; { xLLiM = derive2 { name="xLLiM"; version="2.2"; sha256="0gmy3jy1nf0fixgwcgfhrwcd85ran5ic7srzcx46akad828a4znq"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda progress randomForest]; }; xROI = derive2 { name="xROI"; version="0.9.20"; sha256="0xa12qsw5xbbfqyv60apr4f9gx7q6rad4ywayvw8l2zla2wnhq5h"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; xSub = derive2 { name="xSub"; version="3.0.1"; sha256="0c3jc801pn85wm17jj911spryg6p3gq19im1506zkv8lqwsy1nab"; depends=[countrycode haven RCurl]; }; - xVA = derive2 { name="xVA"; version="0.8.5"; sha256="1scn7acp69k80q9ksygj7ns9937yim8iwhpi54ygm28h20jnfllr"; depends=[SACCR Trading]; }; + xVA = derive2 { name="xVA"; version="1.0"; sha256="00kk3i77xhx05mwh919kd9lckdwihinhlw90syj9ka5xlhdrd3qa"; depends=[SACCR Trading]; }; xaringan = derive2 { name="xaringan"; version="0.23"; sha256="010k6xhblyanjf0hr4k24m26sb547jizng0nidrb2d4q1m9v1wdm"; depends=[htmltools knitr rmarkdown servr xfun]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.1"; sha256="05gkk9ll5whfvhbd8x3p180qzqcz6krz2s26lfbrp2y7srpx9jr4"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; @@ -18859,7 +18914,7 @@ in with self; { xpose4 = derive2 { name="xpose4"; version="4.7.1"; sha256="0y2ws8cq2waiikxw2y34s3qinaq5f832k5nglif3avd8gp2fpn3q"; depends=[dplyr gam Hmisc lattice lazyeval readr survival tibble]; }; xptr = derive2 { name="xptr"; version="1.1.3"; sha256="0352vs8dz61hgpwnf3r9r9haz3adg2wk9qxzrv313p1fcyfjz91v"; depends=[]; }; xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; }; - xrf = derive2 { name="xrf"; version="0.2.0"; sha256="0hzplp2rbsbnmqpvf7ycjzbyf59iabzsppf13xwypdjxyr7f910l"; depends=[dplyr fuzzyjoin glmnet Matrix rlang xgboost]; }; + xrf = derive2 { name="xrf"; version="0.2.1"; sha256="1p7mpjllm09hs3pp5cjcrgndqjh1q19wp5316hx76grjdhlmqbh5"; depends=[dplyr fuzzyjoin glmnet Matrix rlang xgboost]; }; xrnet = derive2 { name="xrnet"; version="0.1.7"; sha256="136aadrvsdg9hizjg4q12h56ih0s3w88j3jpfb54ajgdmqw3pldi"; depends=[BH bigmemory foreach Rcpp RcppEigen]; }; xslt = derive2 { name="xslt"; version="1.4.3"; sha256="1yxiadygkm5l92ywy482h1k1igl3fw6lwizhfv27swhxjcmjl47s"; depends=[Rcpp xml2]; }; xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; }; @@ -18890,7 +18945,6 @@ in with self; { yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; yatah = derive2 { name="yatah"; version="0.1.0"; sha256="0ayy0h399g3csn106vvq6j4h6w0sgzw33b7gj1hk05nc8hdzrmna"; depends=[ape purrr stringr]; }; - ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; yhat = derive2 { name="yhat"; version="2.0-3"; sha256="00cbzj2bvr2pfspycqyf7jrdqyfg63zx25b6r9k3khafvn0ch7h1"; depends=[boot miscTools plotrix yacca]; }; yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; @@ -18899,7 +18953,7 @@ in with self; { ymd = derive2 { name="ymd"; version="0.0.1"; sha256="02cd7y28s406yzvax2d47xwrsqyd8mhhb879ywjqfj6lvwf3jvkd"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.5"; sha256="02flsiqzpasyvskzlygllmrc1vbd4cv6yx4cdfiqrcq1806kdrf2"; depends=[crayon fs glue magrittr miniUI purrr rlang rmarkdown rstudioapi shiny shinyBS stringr usethis whoami withr yaml]; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; }; - yorkr = derive2 { name="yorkr"; version="0.0.31"; sha256="0fsj7j3qlf9q708hd9fq2yqsxsyaxr8gd93crq48nnirw3q9nshn"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + yorkr = derive2 { name="yorkr"; version="0.0.32"; sha256="15zbbvnjig2czyrnfjfmcgglw4g3k3qj9lnhddk79a4xd9v5ky50"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; }; @@ -18910,12 +18964,12 @@ in with self; { yulab_utils = derive2 { name="yulab.utils"; version="0.0.4"; sha256="1bj93gnj7j4b7dgkbr5v22rsbwfcw5dvipl5irmidaakvrihd19q"; depends=[]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; - zCompositions = derive2 { name="zCompositions"; version="1.4.0"; sha256="032kgr5k36d0ffmdg984xx6pl4sq3m9gsiz96qc8p631m05ps3d0"; depends=[MASS NADA truncnorm]; }; + zCompositions = derive2 { name="zCompositions"; version="1.4.0-1"; sha256="1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; zcurve = derive2 { name="zcurve"; version="2.1.2"; sha256="0j5adicqvdbvqq70163ibv09qaxzhdrphh4xgjvipvw9akmmcy0j"; depends=[evmix nleqslv Rcpp Rdpack]; }; - zdeskR = derive2 { name="zdeskR"; version="0.1.1"; sha256="0fqayn2g7903qs51x4ymy0aq36bwrgvp1k2701cd02zvnxy91l3j"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; + zdeskR = derive2 { name="zdeskR"; version="0.2.0"; sha256="0kbdkxly20ai3nfwwqj04gncbg1g3sh9gy323hsif919wpid8qzg"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.3.0"; sha256="1rlcrvhic110h8r0mqwhkzq8w566jfymxpcwv63bvs7fd8j98vsv"; depends=[foreach ggplot2 iterators plyr reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; @@ -18929,7 +18983,7 @@ in with self; { zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; }; zip = derive2 { name="zip"; version="2.2.0"; sha256="1n5ryjdj3i16b4mdp29wapgaklz3yzas5k8ffx7q6fa0jry9i5cz"; depends=[]; }; zipR = derive2 { name="zipR"; version="0.1.1"; sha256="1aaw3dslhsw3zgxvkc1v60vsk44x64i4qmjwx0gq4f7dad1rbiqp"; depends=[]; }; - zipangu = derive2 { name="zipangu"; version="0.2.3"; sha256="03msi9jz3wld83ny8za93mpnb1d856wi9ls08apih23x4272y8g2"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr purrr rlang stringi stringr tibble]; }; + zipangu = derive2 { name="zipangu"; version="0.3.0"; sha256="0s4ym8amaj5wbh28a5bra2rcrywabwim6k7r155mxxf2mvd47kik"; depends=[arabic2kansuji dplyr lifecycle lubridate magrittr memoise purrr rlang stringi stringr tibble]; }; zipcodeR = derive2 { name="zipcodeR"; version="0.3.3"; sha256="16g8y5k9ya528d62xmh2v6kh47pgjapsxsfmf9pqsnph6fd9rf6a"; depends=[curl DBI dplyr httr jsonlite raster rlang RSQLite stringr tidycensus tidyr]; }; zipfR = derive2 { name="zipfR"; version="0.6-70"; sha256="15ng7rj7qbgxajx8jb9kv04xmbidg9wwzxr2xaskmlaxrxlqac8c"; depends=[]; }; zipfextR = derive2 { name="zipfextR"; version="1.0.2"; sha256="03rlvvw7rfbhsbwd5njmgkkkrxq1lgjdydmpkn6h1hi97pc0gbhh"; depends=[copula tolerance VGAM]; }; @@ -18958,9 +19012,11 @@ in with self; { zzlite = derive2 { name="zzlite"; version="0.1.2"; sha256="0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"; depends=[httr jsonlite]; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; + ANTs = derive2 { name="ANTs"; version="0.0.15"; sha256="04iiajq8fi40zzjjg98h75slm848zcrazzg16ll4cnqd8wsd9d3n"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen rstudioapi]; broken = true; }; AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; broken = true; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; broken = true; }; + AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-24"; sha256="0qkhw6bik6s82h4yb5bashqjl8wfxarivvz6r5ffn9cgrvlwyahd"; depends=[fastICA R_matlab]; broken = true; }; AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; broken = true; }; BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; broken = true; }; @@ -18968,40 +19024,53 @@ in with self; { BCT = derive2 { name="BCT"; version="1.1"; sha256="058iir5mhgc7zy1nha8g6299ya9jvg1skxj3flgn3b97snjx5qky"; depends=[igraph Rcpp stringr]; broken = true; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; broken = true; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; broken = true; }; - BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.14"; sha256="05mmi12wn0xis4vwjn9zi3gcpxm9jmp7kpfazxsasbwgvrdd9k3q"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; - BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.3"; sha256="0sirpdp7k28wwn5k5wyc0ib6abb5b1qpjrrk3m168x5yg1s2hqkf"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; broken = true; }; + CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; broken = true; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; broken = true; }; CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; + CIMTx = derive2 { name="CIMTx"; version="1.1.0"; sha256="0091qdh10nxvzm4xxw0vw6k5pa7pi5mdfi5b9msfqfvzq00gyjfx"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; + CombMSC = derive2 { name="CombMSC"; version="1.4.2.1"; sha256="1jxf59hs1px271im2dwc1653y9pfp79gwmacafcva224bvh5vi49"; depends=[]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; + DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; broken = true; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; broken = true; }; + Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; broken = true; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; DiPs = derive2 { name="DiPs"; version="0.6.2"; sha256="13n50wakvh7ny342xl007k1dfbwmgzg8kxvgcpfblaypqn48q09f"; depends=[liqueueR mvnfast plyr]; broken = true; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; broken = true; }; DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; + EHR = derive2 { name="EHR"; version="0.4-5"; sha256="0pxwk5kcj2aap8sj0k1rgsf25hsg1wn9m2wbm2yriscjp70k7rd1"; depends=[data_table lubridate pkdata]; broken = true; }; EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; broken = true; }; + EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; - FAVAR = derive2 { name="FAVAR"; version="0.1.0"; sha256="04ajrq5wii4mccnaxn3wsn7kdfd2pydxaygk6dnbhc6610xs8bc5"; depends=[bvartools coda doParallel dplyr foreach ggplot2 magrittr matlab Matrix MCMCpack]; broken = true; }; + FDboost = derive2 { name="FDboost"; version="1.0-0"; sha256="1227fda2m8lsq3cndv0xgbgbcfdxhc4fjiyj2dmha1z4sycd7a28"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; broken = true; }; FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; + FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; broken = true; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; broken = true; }; + GBcurves = derive2 { name="GBcurves"; version="0.1.6"; sha256="1agd7nkgahhwcc5p1zybnd6xws0kr0ggk70aznxfn2nijhw7sqwr"; depends=[curl functional httr magrittr readxl rvest xml2 xts]; broken = true; }; + GDELTtools = derive2 { name="GDELTtools"; version="1.5"; sha256="1lhsyf7kd1lnx2dgifmrd89yl95sf9k6ay19dll2p8b9h3vs7hci"; depends=[dplyr plyr TimeWarp]; broken = true; }; + GE = derive2 { name="GE"; version="0.2.6"; sha256="0vxrw08851n6vfqsvr11746l36n8m4sq5qyhgw1yrcj5g4qwnbf9"; depends=[CGE data_tree DiagrammeR]; broken = true; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; broken = true; }; GHap = derive2 { name="GHap"; version="2.0.0"; sha256="0br9civfdlksn5xmyrvz2y0knikcd2i175kddxjdqmiyyayckc8w"; depends=[class data_table e1071 lme4 Matrix]; broken = true; }; + GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; HRM_curve = derive2 { name="HRM.curve"; version="0.0.1"; sha256="0p3kvldpz347c0cdjkrdm0x2nfj85hm5cp59lirqhq77hf1zfnd5"; depends=[]; broken = true; }; HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; broken = true; }; + HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; broken = true; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; broken = true; }; HierPorfolios = derive2 { name="HierPorfolios"; version="0.1.0"; sha256="0lx10lnslal689ykp7idvngc074yhfx3mkddyrax91djnqsc8aq4"; depends=[cluster fastcluster RiskPortfolios]; broken = true; }; + Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; broken = true; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; broken = true; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; broken = true; }; @@ -19011,11 +19080,11 @@ in with self; { IRSF = derive2 { name="IRSF"; version="1.0.3"; sha256="1cq196z2i4by7dfij6w849a49d8dzzcdk5a68nxvmvwq3xskywam"; depends=[abind randomForestSRC survival]; broken = true; }; ISEtools = derive2 { name="ISEtools"; version="3.1.1.1"; sha256="00d6znqz2mfmyi9ijgrg2pwl4lnvvsy00ysa7a7vjq7ip8qvcjfq"; depends=[coda Xmisc]; broken = true; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; broken = true; }; + IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; broken = true; }; IceCast = derive2 { name="IceCast"; version="2.1.0"; sha256="0h3z68lfjw5s51601m17m2gvn12vkwj5gzc70dqzfjmxdkgv3p28"; depends=[coda maptools MASS ncdf4 raster Rcpp RcppArmadillo rgeos sp]; broken = true; }; IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; broken = true; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; - KODAMA = derive2 { name="KODAMA"; version="1.8"; sha256="0i1lwjzxjpm9yng763hkbi88q13i9bhcwwin6b3lkif34r4c3n8y"; depends=[minerva Rcpp RcppArmadillo]; broken = true; }; KernelICA = derive2 { name="KernelICA"; version="0.1.0"; sha256="1yq7w24qq23c81a9y0jn36iw7zjbxsj3b3p1rq6yl0lanzda9bsr"; depends=[ICtest inline JADE ManifoldOptim Rcpp RcppArmadillo RcppEigen]; broken = true; }; Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; broken = true; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; broken = true; }; @@ -19025,21 +19094,34 @@ in with self; { LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; broken = true; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; broken = true; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; broken = true; }; + MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; broken = true; }; MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; broken = true; }; + MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; + MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; + MRPC = derive2 { name="MRPC"; version="3.0.0"; sha256="1lqqfffqvzvp7g3phrjcra0n52lcl2xywibh0vizc85fkkp1clbd"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; broken = true; }; + MTS = derive2 { name="MTS"; version="1.1.1"; sha256="0mb7h4h94a2x104ybkg9836k3szdimlcdccwxjc5naarxhdifv60"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; + Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; broken = true; }; + MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; broken = true; }; + MetaClean = derive2 { name="MetaClean"; version="1.0.0"; sha256="12vgdizggyz6wx08qf34jfhwgpzfrkgq63fvhfgi5gbf1nhma5zz"; depends=[BiocStyle caret fastAdaboost ggplot2 graph kernlab klaR knitr MLmetrics plotrix randomForest reshape2 Rgraphviz rpart xcms]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; broken = true; }; + MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; broken = true; }; + ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; + MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; + NADA2 = derive2 { name="NADA2"; version="1.0.1"; sha256="01x3ylrp3kizq9aa0wyaj4jbyr4si2vi8rc3b8r0bllnsl2ia2ix"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; broken = true; }; NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; broken = true; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; + OTclust = derive2 { name="OTclust"; version="1.0.4"; sha256="11mr67zp68wzf1dd6vb3f31g8a430im97sdjsb0w4awqpmjdyyrz"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; broken = true; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; Omisc = derive2 { name="Omisc"; version="0.1.4"; sha256="1f6aakywjabq0xds5yl70ivr1jmw26zry2m65xszfp8p5mp45c7g"; depends=[copula MASS psych]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; @@ -19047,43 +19129,54 @@ in with self; { PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; + PPTcirc = derive2 { name="PPTcirc"; version="0.2.1"; sha256="07z5561gkn1wafgp9fj1qkj7mqr0n1pda1v6687gh5s170glnlbw"; depends=[circular progress]; broken = true; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; + PRSim = derive2 { name="PRSim"; version="1.4-1"; sha256="15vj8d61vax6nr25wxbwsj48l8zmam6av943fbis2h6gw5cm4rbf"; depends=[goftest homtest lmomco mev splus2R wavScalogram]; broken = true; }; PVplr = derive2 { name="PVplr"; version="0.1.0"; sha256="1ssmdhq2qczk6n50f8jj4j3nym7jj9bshfc1f29lccvmp7wxdp9a"; depends=[broom cluster dplyr ggplot2 magrittr minpack_lm purrr rlang segmented stlplus tidyr]; broken = true; }; + PandemicLP = derive2 { name="PandemicLP"; version="1.3.0"; sha256="12mhzzp5qjdg4krwa7z51lbcyxnp9lyp3jb16bcchmy3ggd1m3cx"; depends=[BH covid19br curl dplyr plotly Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; broken = true; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.3"; sha256="1h53qwhc63fglm452b3by7f3g6f3hyqwkmwmbdqdb9rv3j4gvnvg"; depends=[ggplot2]; broken = true; }; PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; + QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; broken = true; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; + RAT = derive2 { name="RAT"; version="0.2.0"; sha256="1sc1bmkk9lba1d7jxrw7wy5lcikixalwibsk7mpgv3x30m8mkc55"; depends=[ggplot2 mapproj wosr]; broken = true; }; RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; broken = true; }; RBestMatch = derive2 { name="RBestMatch"; version="0.1.1"; sha256="1nx1dnhlqi4gad1yw6h91av911wv6dap252hza98dgjysv46spya"; depends=[DiPs mvnfast plyr]; broken = true; }; RCSL = derive2 { name="RCSL"; version="0.99.95"; sha256="1ngzbhrc74ljhidsf7a17k4hyx0igv2srgbf822gm2wawzsmp0y2"; depends=[ggplot2 igraph mclust NbClust pracma RcppAnnoy Rtsne SingleCellExperiment umap]; broken = true; }; RClone = derive2 { name="RClone"; version="1.0.3"; sha256="1zcb7s88qkpcbkhvawggsckzs5d9s9l9kr2c2njrr86ymq7lgwdj"; depends=[]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; + REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; broken = true; }; + RFCCA = derive2 { name="RFCCA"; version="1.0.7"; sha256="0v0himz0zz6f52vvc5h33qiij0101zgihzwak8cw5193xzsfmr4g"; depends=[CCA PMA]; broken = true; }; RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; broken = true; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; broken = true; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; + RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[Matrix ROI slam]; broken = true; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; + RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-7"; sha256="07vh1wyp2rxhfrb4vi5njchrby99bynd88na8qjxcnbypkgsrhbl"; depends=[BH Rcpp RcppArmadillo]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; + RevGadgets = derive2 { name="RevGadgets"; version="1.0.0"; sha256="0k17flvax4cq9cvl3fsyv5ya0bndikxbzdmk87v5xz3czf31kk81"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape tibble tidyr tidytree treeio]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; + SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; broken = true; }; SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; broken = true; }; SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; broken = true; }; - SEA = derive2 { name="SEA"; version="2.0"; sha256="1pw1509qjjqz63a8biwakdxqgln7kjviacqrjvp1323vf55bi4fs"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; broken = true; }; SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; broken = true; }; SIMMS = derive2 { name="SIMMS"; version="1.3.1"; sha256="0kgaky1hpvvbs2hbzaili9h9pv34c5drfh0d1rc8vf9099xw8575"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; broken = true; }; + SLBDD = derive2 { name="SLBDD"; version="0.0.3"; sha256="0dvrrvxm1wfr1wpl0r5mkpm8wavkc9hf1mg6gxgb9sshphcn0pg3"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; broken = true; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; broken = true; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; broken = true; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; broken = true; }; @@ -19091,26 +19184,32 @@ in with self; { Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; + SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; - TDA = derive2 { name="TDA"; version="1.8.5"; sha256="16dpbgwkp58ibjck3yjziv5p852vn8qxv4v77z17r18909a0j8lp"; depends=[BH FNN igraph Rcpp RcppEigen scales]; broken = true; }; + TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; + TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; broken = true; }; TKCat = derive2 { name="TKCat"; version="0.7.1"; sha256="19iv6srfmvl30mnwxzxwzm5d6fmpgyan490fkszqhq7jjzjhbgg7"; depends=[base64enc DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown promises RClickhouse readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; + TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; + TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; - Tushare = derive2 { name="Tushare"; version="0.1.3"; sha256="12aabkwlifc82yiym3yijpfpjhmhfwpw8mz4fb11qm6n4igr1yhg"; depends=[data_table forecast httr tidyverse]; broken = true; }; UNF = derive2 { name="UNF"; version="2.0.7"; sha256="1i7aj9w90c1bn581l820iasxhs4ibs7xwbhid7gdkz9f87cz568r"; depends=[base64enc digest]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; + VARDetect = derive2 { name="VARDetect"; version="0.1.5"; sha256="0cj4cc2kys6hblyh88fc64aaz4ln7961y48qkffrmv3367wr1ypj"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; broken = true; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; + Zelig = derive2 { name="Zelig"; version="5.1.7"; sha256="1x1zcmlhbbzxbb0y91ynz50nfhpki913lnmhcpmlds7drcbbirnk"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; broken = true; }; aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; broken = true; }; + aba = derive2 { name="aba"; version="0.0.9"; sha256="1qnhnbbd8iir686gc48fld62pd4da39flf2djvvif2bxcvwl8y7a"; depends=[broom dplyr generics ggplot2 glue magrittr purrr rlang stringr tibble tidyr]; broken = true; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; broken = true; }; abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; broken = true; }; + adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; broken = true; }; agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; broken = true; }; - algaeClassify = derive2 { name="algaeClassify"; version="1.2.0"; sha256="1sna5rij2ngpgqfz5cviqdbyr43xph8cbjc4vnm238n72zgg7cb6"; depends=[httr lubridate plyr RCurl rvest taxize XML xml2]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; @@ -19124,26 +19223,34 @@ in with self; { automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; broken = true; }; + basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; broken = true; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; + betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; broken = true; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; broken = true; }; bigmatch = derive2 { name="bigmatch"; version="0.6.2"; sha256="16nmc0n78gzk8x8jhxdilj47gjqqv46sgiivccn5zkv08k1h3jj2"; depends=[liqueueR mvnfast plyr rcbalance]; broken = true; }; binnednp = derive2 { name="binnednp"; version="0.4.0"; sha256="1qswrr982x5hy2vl2fc603j98cjli9l40zzvvjy2l91p8xxrc5dn"; depends=[doParallel fitdistrplus foreach kedd mclust nor1mix Rcpp Rdpack]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; + bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; + blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; broken = true; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; broken = true; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; - boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; broken = true; }; + boxcoxmix = derive2 { name="boxcoxmix"; version="0.28"; sha256="12f1lakfy9i1rq70cq0bffpdachsm58rcmbbhgnq1r31g028zrcc"; depends=[npmlreg qicharts statmod]; broken = true; }; brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; broken = true; }; catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; + causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; broken = true; }; + cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; broken = true; }; cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; + cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; broken = true; }; + chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; broken = true; }; circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; @@ -19151,36 +19258,49 @@ in with self; { connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; coreheat = derive2 { name="coreheat"; version="0.2.2"; sha256="1mahnd6k7whd7nj9ax1fhpm17j35i6prww06qx691l8dfn954ld9"; depends=[Biobase convertid heatmapFlex WGCNA]; broken = true; }; + countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; broken = true; }; cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; + data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; broken = true; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; broken = true; }; datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; broken = true; }; dcortools = derive2 { name="dcortools"; version="0.1.2"; sha256="0p4qbah5jnb6jraka8bg6cks3namrz66bya2iz98q2adarqd517h"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; broken = true; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; broken = true; }; + deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; broken = true; }; + define = derive2 { name="define"; version="0.2.9"; sha256="0sq7ryiz1py0yw7g2bncd834zsdiy1y7rck8k4grrx2ips5gv2jy"; depends=[encode Hmisc latexpdf SASxport spec]; broken = true; }; + delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; broken = true; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; broken = true; }; - diathor = derive2 { name="diathor"; version="0.0.9"; sha256="1p6y89vi37a8i3fwnj7rb0hdggk6qrxnsrw0sbpajzkwv1jvyal0"; depends=[algaeClassify data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; broken = true; }; + denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; + diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; broken = true; }; + dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; + drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; broken = true; }; + dsims = derive2 { name="dsims"; version="0.2.2"; sha256="1fmffmiz8k9gqybv2wmq33ds5fgl2lc7nrhi02i0nxwhjqw42da5"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; eBsc = derive2 { name="eBsc"; version="4.13"; sha256="0n4v07462kxcsyjdy0cjbkn48ryzfnrvj28gxpsxwzn2sddfpl86"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; broken = true; }; - ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; broken = true; }; + ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; + edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; broken = true; }; efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; broken = true; }; egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; broken = true; }; + eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; broken = true; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; - emstreeR = derive2 { name="emstreeR"; version="2.2.2"; sha256="0lchkkn6s265xnk25bprijlc6nl62nwcp0l9nwplyw7q492ysg0q"; depends=[BBmisc BH ggplot2 Rcpp RcppArmadillo RcppMLPACK scatterplot3d]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.8.0"; sha256="00akdhqs7jabk7g33rwmxs92jcr39shy9s456nqxk6x4244d2vb3"; depends=[fitdistrplus investr sn]; broken = true; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; broken = true; }; + epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; broken = true; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; + expstudy = derive2 { name="expstudy"; version="1.0.0"; sha256="1b66pfx8smrwwrryxa8rmn4gv692hmllqzy968fp7n58qzciv550"; depends=[assertthat checkmate cli data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect withr]; broken = true; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; broken = true; }; factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; broken = true; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; broken = true; }; @@ -19188,6 +19308,7 @@ in with self; { fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; broken = true; }; fdacluster = derive2 { name="fdacluster"; version="0.1.0"; sha256="17vk3v8saf3xqab8h92k88l2xfwa3mb0x40p1mdgywgg23nvk3mm"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; + ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; broken = true; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; broken = true; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; broken = true; }; fishflux = derive2 { name="fishflux"; version="0.0.1.5"; sha256="0ni3r37s6dvj3mmr04fnr7fird4x2wxdxq9vxzabcgmx9f4ydfiz"; depends=[BH curl dplyr fishualize ggplot2 httr plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; broken = true; }; @@ -19200,7 +19321,10 @@ in with self; { ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; broken = true; }; fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; + gRim = derive2 { name="gRim"; version="0.2.7"; sha256="05w8dj69yc3lxdlfcmpr9yjdh33xv2vmjzlplf4kgdwmdjr2b9gf"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; + gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-5"; sha256="1qlcsfv9k9aydv2bdfmbrilxfcmp3nzixnlr59k8idg1f7ph04cl"; depends=[mboost stabs]; broken = true; }; + garchmodels = derive2 { name="garchmodels"; version="0.1.1"; sha256="1nmhsxhfbp7jn85jwnhm4p5kl0jc5n1bjwwwpia774ycr6krazwn"; depends=[dials dplyr magrittr parsnip purrr rlang rmgarch rugarch stringr tibble tidyr]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; geobr = derive2 { name="geobr"; version="1.6.5"; sha256="08kl0215q524dq5scx2cm11a7m65xh0wzryl71grrlbqm5000pjj"; depends=[curl data_table httr sf]; broken = true; }; @@ -19208,9 +19332,11 @@ in with self; { gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; + gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; + gremes = derive2 { name="gremes"; version="0.1.0"; sha256="1ih5303sis2icic1q13gh6h3qbb1fzw0j7pdla75csiffjc77hw7"; depends=[abind copula gRbase gRim igraph mev mvtnorm quadprog]; broken = true; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; gsbm = derive2 { name="gsbm"; version="0.2.1"; sha256="16j4g0wl9phmx85dbrzxsdjcv0nnipgj214fvbz9m6n66khr5pkp"; depends=[doParallel foreach Matrix RSpectra softImpute]; broken = true; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; @@ -19228,7 +19354,10 @@ in with self; { ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; + idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; broken = true; }; ifultools = derive2 { name="ifultools"; version="2.0-23"; sha256="16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk"; depends=[MASS splus2R]; broken = true; }; + iheiddown = derive2 { name="iheiddown"; version="0.8.6"; sha256="0w36w875fzxx8parjc6lb9nwvfjs0p2vv1pzd12cb160pgn9y7mc"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pdftools purrr readr remotes rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; broken = true; }; + ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; broken = true; }; inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; @@ -19236,33 +19365,34 @@ in with self; { interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; broken = true; }; - iq = derive2 { name="iq"; version="1.9.1"; sha256="1n4hdkw37364ilc8v3bffmnwd7r8cpysn7jssf9h9jxh9pyd612y"; depends=[]; broken = true; }; isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; broken = true; }; itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; + james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; broken = true; }; + kzfs = derive2 { name="kzfs"; version="1.5.0.2"; sha256="0x0fc807p0pwsjkhjq51ymwr9nhs6cb0m82029cz8bbn3yf6cymq"; depends=[digest kzft]; broken = true; }; + kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; broken = true; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; broken = true; }; lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; broken = true; }; - lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; broken = true; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; - lmeresampler = derive2 { name="lmeresampler"; version="0.2.0"; sha256="1qjxv3vrgw183hvya2k4qidnnx9w64lcksjm6v727kcigl3x9h1f"; depends=[catchr dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod]; broken = true; }; lmfor = derive2 { name="lmfor"; version="1.5"; sha256="1r301ajcp9ag23n0nw1rgwg8ss5cvinwqargbdg0jpqbhdrgaq7y"; depends=[magic nlme spatstat]; broken = true; }; + loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; broken = true; }; maGUI = derive2 { name="maGUI"; version="3.0"; sha256="1ak2sa6y766v5zh54bf7j9hklmkia40nsdchyw834ybb9ijjyjsm"; depends=[Biobase gWidgets2 gWidgets2RGtk2 impute limma Rgraphviz RGtk2 ssize]; broken = true; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.9"; sha256="0357bgwf6xcq19f1xfxv26gk6drq806jknjq4h32rldqn0sfab0p"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; broken = true; }; mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; + medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; @@ -19273,6 +19403,7 @@ in with self; { mlbstatsR = derive2 { name="mlbstatsR"; version="0.1.0.3"; sha256="0rcjfbi383rdk2fyrw47ni0jrzp7yj2sr8xzxvk3gmh321i3pn5d"; depends=[dplyr ggplot2 ggtext glue httr janitor jsonlite purrr rvest stringr tibble tidyr xml2]; broken = true; }; mleap = derive2 { name="mleap"; version="1.1.0"; sha256="0s15srbnk8fs5vj12gdszpg6g563q17v42fng2rydkgi4q7m2vj6"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; broken = true; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; broken = true; }; + mlmts = derive2 { name="mlmts"; version="1.0.0"; sha256="0vgrwcbhj4a3vlf9bddzfnicc6bsq0q2ryilq7kdv4yn58d5ggxx"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; broken = true; }; mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; broken = true; }; @@ -19280,8 +19411,13 @@ in with self; { mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; + multDM = derive2 { name="multDM"; version="1.1.3"; sha256="16bvr62lxmrq79z856iigwz5cjhk327x4hhd0cg3adgabqcz04yp"; depends=[MTS]; broken = true; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; broken = true; }; + multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; broken = true; }; + multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; broken = true; }; + mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; broken = true; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; + mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; broken = true; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; namer = derive2 { name="namer"; version="0.1.5"; sha256="1687x6rc46bp2bmqkixzry5cc7lxjqwjk8ngrbg2fk7mzb4pwvnq"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; broken = true; }; @@ -19290,8 +19426,11 @@ in with self; { nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; + onlineforecast = derive2 { name="onlineforecast"; version="1.0.0"; sha256="191rqfz9y6hpgb21k38v3051pv9w4hm35kyg2znv864c5s7bk5ma"; depends=[digest pbs R6 Rcpp RcppArmadillo]; broken = true; }; optband = derive2 { name="optband"; version="0.2.1"; sha256="1rv4r7h7x3xipav917cz9bcr6nqjzbinfrqxv8mcls9gdl9ha3y9"; depends=[LambertW]; broken = true; }; - optmatch = derive2 { name="optmatch"; version="0.9-17"; sha256="1q55dchgdv05s3q6x0k8ybzmfcvzxsf893gvhs2cgijxrfgvgyv0"; depends=[digest Rcpp survey survival]; broken = true; }; + orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; broken = true; }; + ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; broken = true; }; + oxcgrt = derive2 { name="oxcgrt"; version="0.1.0"; sha256="006kdggqdy7nkllln5p7fsapmmn5wlampyw2ifc4ls9jbz0p5h16"; depends=[countrycode dplyr jsonlite magrittr stringr tibble tidyr]; broken = true; }; packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; @@ -19302,49 +19441,60 @@ in with self; { pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; broken = true; }; pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; + penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; photosynthesis = derive2 { name="photosynthesis"; version="2.0.1"; sha256="0drbic4sdx841pzcqvi0gkny7qrnzixlc0wsr6m0llh7pfyl99s6"; depends=[checkmate crayon dplyr furrr future ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; broken = true; }; - phreeqc = derive2 { name="phreeqc"; version="3.6.3"; sha256="0z20gj1kqhnbvx33sswz5ivj7nk2p4hia4gr2npscs94nc50b5j4"; depends=[]; broken = true; }; physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; + plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; + pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; broken = true; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; + praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; broken = true; }; - prider = derive2 { name="prider"; version="1.0.2"; sha256="0a7n4b2a0p91q8llgn14czfxvi588v62x5azl7nndvjdk6g4cmmy"; depends=[blaster dplyr gplots magrittr purrr Rcpp stringr tibble tidyr]; broken = true; }; + provSummarizeR = derive2 { name="provSummarizeR"; version="1.4.2"; sha256="1pfnrvgqzpdhrsyh0y75idwj13zgcdj7ql6frpjmc0f5cggv7q1q"; depends=[dplyr provParseR]; broken = true; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; + quantdr = derive2 { name="quantdr"; version="1.2.1"; sha256="04m75lv8fsz78bvq65rgxmrqgr3bdwmhbqy6ddi1h5av8c131qrq"; depends=[dr KernSmooth mvtnorm quantreg]; broken = true; }; + rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; broken = true; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; broken = true; }; rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; broken = true; }; - rKolada = derive2 { name="rKolada"; version="0.2.0"; sha256="0ikyjzg8xbzyah37dpfwq2slssz956irm4dj8b7zv6x9qxi09gj9"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; + rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; - rattle = derive2 { name="rattle"; version="5.4.0"; sha256="1cg26k491f78yqwis07djad8b3f9ndqwqylbh5sh66l2j9bdpmz5"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; broken = true; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; - rbedrock = derive2 { name="rbedrock"; version="0.1.1"; sha256="0vh6pg1lg2764zjhciswznvq7ccrd71855bmdadlj6cc1gv0fphq"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; broken = true; }; - rcbsubset = derive2 { name="rcbsubset"; version="1.1.6"; sha256="0ks94x34fw7rcvbccli6b0rlvdj3asfy6h4rm19nb022r9dax86f"; depends=[MASS plyr rcbalance]; broken = true; }; + rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; broken = true; }; rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdataretriever = derive2 { name="rdataretriever"; version="3.0.0"; sha256="1a01lrzn7gcxid01r0l8nnbpbryvs07z9nf43l1143w2n9bvgn24"; depends=[reticulate semver]; broken = true; }; + rdtLite = derive2 { name="rdtLite"; version="1.3"; sha256="1njn6x2k03qxmb96d5sl7jz0xq5wabbixn9xy55ypw8g1k0cgmd1"; depends=[curl digest gtools jsonlite knitr provSummarizeR provViz rlang rmarkdown sessioninfo stringi XML]; broken = true; }; + regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; + reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; broken = true; }; retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; rgho = derive2 { name="rgho"; version="2.0.2"; sha256="02p7xnfczbnvbm60hhfyywwg8iwsakk1gm29xsj9vq3ldxdjxbbv"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; broken = true; }; + robin = derive2 { name="robin"; version="1.1.0"; sha256="11z09g4nzswdqhx5w0vmx1gmxkh0k451hr50avcny6q1r7hykjk6"; depends=[DescTools fdatest ggplot2 gprege gridExtra igraph networkD3 qpdf]; broken = true; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; broken = true; }; - safedata = derive2 { name="safedata"; version="1.0.9"; sha256="0xcpgh4898rqdnnxx21vyxc8aqlwg26aywr591sllasrv1jzsmrc"; depends=[chron curl igraph jsonlite readxl sf]; broken = true; }; + rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; broken = true; }; + rsolr = derive2 { name="rsolr"; version="0.0.11"; sha256="0h82x9ihzgw9l1ksn1l5w7x3vgyy6zlbdbvg9a4pa1iinhlf87ic"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; broken = true; }; salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; + scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; + selfmade = derive2 { name="selfmade"; version="0.1"; sha256="0d3v202dqr3c2564g6w7k27mhy1nxx7ngpiai7yxq2s88wa7cydi"; depends=[lme4 Matrix mgcv]; broken = true; }; + semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; broken = true; }; sensR = derive2 { name="sensR"; version="1.5-2"; sha256="073za0z6dawba2nd45hs20m0143kckxn3iglkyqz9vdfqwyv7wlq"; depends=[MASS multcomp numDeriv]; broken = true; }; sequoia = derive2 { name="sequoia"; version="2.3.5"; sha256="1n0c24g5zl0l63nsaywwjfqsjn0ql2ckd3iqmc381qngijnckc17"; depends=[plyr]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; @@ -19352,13 +19502,17 @@ in with self; { simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; simfinR = derive2 { name="simfinR"; version="0.2.3"; sha256="1swlgwmd5frz72i3vjv7am8s6vr6i7mv76j7hxffk3l7xmq7y53s"; depends=[crayon digest dplyr jsonlite lubridate magrittr memoise purrr]; broken = true; }; + sismonr = derive2 { name="sismonr"; version="2.1.0"; sha256="1v4vfz6zc4f70fay8r9vaxj62pcp8gqnh4aczbqpym9874330vi9"; depends=[dplyr ggplot2 ggpubr igraph jsonlite magrittr rlang scales stringr tictoc tidyr truncnorm XR XRJulia]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; sobir = derive2 { name="sobir"; version="0.1.2"; sha256="0di9mk1c1jf8yr7jpmfm19w2w3p9lz1mkgrv3bmfyab83aghvbfp"; depends=[DescTools devtools dplyr ggplot2 raster rlang scales sp statmod stringr tidyr usethis]; broken = true; }; spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; - spagmix = derive2 { name="spagmix"; version="0.3-4"; sha256="032dmz8cx4j5vl229gi1xkncc1wggfrf1a24qqwl2bzxrdfp27rw"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; + spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; broken = true; }; + sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; + specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; + specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; @@ -19366,22 +19520,26 @@ in with self; { stacomiR = derive2 { name="stacomiR"; version="0.6.0"; sha256="0mcq7lcwcz9s18vdd7762dfr2fyb5fqvnv0b5ljp7kdbr3ia977y"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres stacomirtools stringr withr xtable]; broken = true; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; broken = true; }; stanette = derive2 { name="stanette"; version="2.21.2"; sha256="1266555964cymrgrmfzjk2x12hpyjvd18c8q0lx92wdssnqzhhzr"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; broken = true; }; - stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; broken = true; }; + sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; broken = true; }; - subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; broken = true; }; + svines = derive2 { name="svines"; version="0.1.3"; sha256="0zpbf6xcl7sxmmmz5v4xgg70y5dijvdl0qqhlaipwv21w0mvzhxk"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; broken = true; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; broken = true; }; + taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; - test2norm = derive2 { name="test2norm"; version="0.2.0"; sha256="02dmskqnxinfdxxq5s969p37fps0wpiz6mrcnx03f03a3gzqljl0"; depends=[mfp]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; broken = true; }; + thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; broken = true; }; tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; broken = true; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; broken = true; }; tlsh = derive2 { name="tlsh"; version="0.1.0"; sha256="0106y17cr3hq09ahy3rxhxqzgc0655w2jr0s3iyr8zvxsdv5ahb5"; depends=[bit64 blink igraph plyr]; broken = true; }; + trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; broken = true; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; + treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; + triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; @@ -19389,18 +19547,24 @@ in with self; { uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; + varrank = derive2 { name="varrank"; version="0.4"; sha256="03zyv1cgrdnj7gzrp1ag0sqpxikrlsj3gg4x78gp1wxqwzq7aizx"; depends=[FNN]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; broken = true; }; + vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.0"; sha256="1vxlqfcdkwajz9r6rmz48x87csl6d7dqshabhgwnvgvy206jh3b7"; depends=[forecast nnfor vmd]; broken = true; }; vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; broken = true; }; + vortexR = derive2 { name="vortexR"; version="1.1.7"; sha256="06i2rqbc3h2kv8jjrdlrg03xrzb3yiyzpnv2rvlkjcnn46f84bgf"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; broken = true; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; broken = true; }; + wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; broken = true; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; - wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.2"; sha256="03z9qayrv34lgajvwg77b0h7z65r04wzlkaazpdfxq9wk027g3a9"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; broken = true; }; weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; wflo = derive2 { name="wflo"; version="1.6"; sha256="04qxm1vvmgxbpj1wwj7n48klhsprkj774jnj4qfhqza33mhymydb"; depends=[emstreeR plotrix progress raster rgdal sp]; broken = true; }; windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; broken = true; }; + worldfootballR = derive2 { name="worldfootballR"; version="0.5.1"; sha256="1nyxjp4hx0ds32ixc1sbh96v2yppvakz680g3v3b8xd7lrh11xa7"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tibble tidyr withr xml2]; broken = true; }; + wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; broken = true; }; + ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; broken = true; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; } diff --git a/pkgs/development/ruby-modules/bundler-app/default.nix b/pkgs/development/ruby-modules/bundler-app/default.nix index 03bf7275cc7..e3c430cc923 100644 --- a/pkgs/development/ruby-modules/bundler-app/default.nix +++ b/pkgs/development/ruby-modules/bundler-app/default.nix @@ -57,7 +57,7 @@ in "--set BUNDLE_FROZEN 1 "+ "--set GEM_HOME ${basicEnv}/${ruby.gemPath} "+ "--set GEM_PATH ${basicEnv}/${ruby.gemPath} "+ - "--run \"cd $srcdir\";\n") scripts)} + "--chdir \"$srcdir\";\n") scripts)} ${lib.optionalString installManpages '' for section in {1..9}; do diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index d1173e4cbf3..73f32a356f4 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -32,13 +32,13 @@ with py.pkgs; buildPythonApplication rec { pname = "checkov"; - version = "2.0.1065"; + version = "2.0.1068"; src = fetchFromGitHub { owner = "bridgecrewio"; repo = pname; rev = version; - hash = "sha256-q51do9Kbl85p+wOMnFM4QpjezHll8sTmw8vffWcQrRE="; + hash = "sha256-/WJiGWBGcVDoiX+FnEbIFaMRxQSnJTqLqHbKlEoCqWU="; }; nativeBuildInputs = with py.pkgs; [ diff --git a/pkgs/development/tools/analysis/coan/default.nix b/pkgs/development/tools/analysis/coan/default.nix index 3ef6c2b8459..b7261705545 100644 --- a/pkgs/development/tools/analysis/coan/default.nix +++ b/pkgs/development/tools/analysis/coan/default.nix @@ -11,6 +11,10 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ perl ]; + NIX_CFLAGS_COMPILE = [ + "-std=c++11" + ]; + enableParallelBuilding = true; postInstall = '' diff --git a/pkgs/development/tools/analysis/codeql/default.nix b/pkgs/development/tools/analysis/codeql/default.nix index abc2dc24474..2584965499e 100644 --- a/pkgs/development/tools/analysis/codeql/default.nix +++ b/pkgs/development/tools/analysis/codeql/default.nix @@ -43,6 +43,7 @@ stdenv.mkDerivation rec { description = "Semantic code analysis engine"; homepage = "https://codeql.github.com"; maintainers = [ maintainers.dump_stack ]; + platforms = [ "x86_64-linux" ]; license = licenses.unfree; }; } diff --git a/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix index 0ecf6300eb2..9f2fb8b40f4 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_0_29/default.nix @@ -112,7 +112,8 @@ let src = srcDepsSet."java_tools_javac11_${system}-v4.0.zip"; - nativeBuildInputs = [ autoPatchelfHook unzip ]; + nativeBuildInputs = [ unzip ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ gcc-unwrapped ]; sourceRoot = "."; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix index 3adf52ec905..0402fb85f26 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_1/default.nix @@ -112,7 +112,8 @@ let src = srcDepsSet."java_tools_javac11_${system}-v6.1.zip"; - nativeBuildInputs = [ autoPatchelfHook unzip ]; + nativeBuildInputs = [ unzip ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ gcc-unwrapped ]; sourceRoot = "."; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix index 3c71c8cc089..3a5c9e2e76f 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_3/default.nix @@ -117,7 +117,8 @@ let src = srcDepsSet."java_tools_javac11_${system}-v10.0.zip"; - nativeBuildInputs = [ autoPatchelfHook unzip ]; + nativeBuildInputs = [ unzip ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ gcc-unwrapped ]; sourceRoot = "."; diff --git a/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix b/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix index 72c971d1334..79bb378534b 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel_4/default.nix @@ -142,7 +142,8 @@ let src = srcDepsSet."java_tools_javac11_${system}-v10.6.zip"; - nativeBuildInputs = [ autoPatchelfHook unzip ]; + nativeBuildInputs = [ unzip ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ gcc-unwrapped ]; sourceRoot = "."; diff --git a/pkgs/development/tools/build-managers/bloop/default.nix b/pkgs/development/tools/build-managers/bloop/default.nix index ab8c5856a1a..0649b0c86c6 100644 --- a/pkgs/development/tools/build-managers/bloop/default.nix +++ b/pkgs/development/tools/build-managers/bloop/default.nix @@ -66,7 +66,8 @@ stdenv.mkDerivation rec { }; dontUnpack = true; - nativeBuildInputs = [ autoPatchelfHook installShellFiles makeWrapper ]; + nativeBuildInputs = [ installShellFiles makeWrapper ] + ++ lib.optional stdenv.isLinux autoPatchelfHook; buildInputs = [ stdenv.cc.cc.lib zlib ]; propagatedBuildInputs = [ jre ]; diff --git a/pkgs/development/tools/build-managers/conan/default.nix b/pkgs/development/tools/build-managers/conan/default.nix index e4a616f9995..8978a0635c8 100644 --- a/pkgs/development/tools/build-managers/conan/default.nix +++ b/pkgs/development/tools/build-managers/conan/default.nix @@ -48,6 +48,13 @@ let newPython = python3.override { sha256 = "29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b"; }; }); + distro = super.distro.overridePythonAttrs (oldAttrs: rec { + version = "1.5.0"; + src = oldAttrs.src.override { + inherit version; + sha256 = "14nz51cqlnxmgfqqilxyvjwwa5xfivdvlm0d0b1qzgcgwdm7an0f"; + }; + }); }; }; diff --git a/pkgs/development/tools/build-managers/wafHook/setup-hook.sh b/pkgs/development/tools/build-managers/wafHook/setup-hook.sh index 6cea8fcc2ea..e2f6714a32d 100644 --- a/pkgs/development/tools/build-managers/wafHook/setup-hook.sh +++ b/pkgs/development/tools/build-managers/wafHook/setup-hook.sh @@ -10,6 +10,10 @@ wafConfigurePhase() { wafConfigureFlags="${prefixKey:---prefix=}$prefix $wafConfigureFlags" fi + if [ -n "${PKG_CONFIG}" ]; then + export PKGCONFIG="${PKG_CONFIG}" + fi + local flagsArray=( "${flagsArray[@]}" $wafConfigureFlags "${wafConfigureFlagsArray[@]}" diff --git a/pkgs/development/tools/ccloud-cli/default.nix b/pkgs/development/tools/ccloud-cli/default.nix index 5814ab90e6d..2a3d1de41a1 100644 --- a/pkgs/development/tools/ccloud-cli/default.nix +++ b/pkgs/development/tools/ccloud-cli/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { sha256 = "0936hipcl37w4mzzsnjlz4q1z4j9094i4irigzqwg14gdbs7p11s"; }); - nativeBuildInputs = [ autoPatchelfHook ]; + nativeBuildInputs = lib.optionals stdenv.hostPlatform.isLinux [ autoPatchelfHook ]; dontStrip = stdenv.isDarwin; diff --git a/pkgs/development/tools/confluent-cli/default.nix b/pkgs/development/tools/confluent-cli/default.nix index 9664a75703a..059a3272038 100644 --- a/pkgs/development/tools/confluent-cli/default.nix +++ b/pkgs/development/tools/confluent-cli/default.nix @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { sha256 = "1wvy7x56cc7imycf0d83mxcqzdvv56cc0zbp913xgghjn9dl2z7a"; }); - nativeBuildInputs = [ autoPatchelfHook ]; + nativeBuildInputs = lib.optionals stdenv.hostPlatform.isLinux [ autoPatchelfHook ]; dontStrip = stdenv.isDarwin; diff --git a/pkgs/development/tools/database/litecli/default.nix b/pkgs/development/tools/database/litecli/default.nix index b2a96ab0dc5..a1c35c88ee8 100644 --- a/pkgs/development/tools/database/litecli/default.nix +++ b/pkgs/development/tools/database/litecli/default.nix @@ -4,12 +4,12 @@ python3Packages.buildPythonApplication rec { pname = "litecli"; - version = "1.6.0"; + version = "1.8.0"; disabled = python3Packages.pythonOlder "3.4"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "sha256-TSdOFHW007syOEg4gwvEqDiJkrfLgRmqjP/H/6oBZ/k="; + sha256 = "sha256-AvaSdHlwRlw7rN/o8GjcXZbyXVsrEh+XF37wVTBEED4="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/tools/database/sqldeveloper/default.nix b/pkgs/development/tools/database/sqldeveloper/default.nix index da43a4daf7d..655156c176c 100644 --- a/pkgs/development/tools/database/sqldeveloper/default.nix +++ b/pkgs/development/tools/database/sqldeveloper/default.nix @@ -62,7 +62,7 @@ in makeWrapper $out/libexec/sqldeveloper/bin/sqldeveloper $out/bin/sqldeveloper \ --set JAVA_HOME ${jdk.home} \ - --run "cd $out/libexec/sqldeveloper/bin" + --chdir "$out/libexec/sqldeveloper/bin" ''; meta = with lib; { diff --git a/pkgs/development/tools/easyjson/default.nix b/pkgs/development/tools/easyjson/default.nix index 75bfc1d4c14..270d63ed2a7 100644 --- a/pkgs/development/tools/easyjson/default.nix +++ b/pkgs/development/tools/easyjson/default.nix @@ -1,21 +1,22 @@ { lib, buildGoPackage, fetchFromGitHub }: -buildGoPackage { +buildGoPackage rec { pname = "easyjson"; - version = "unstable-2019-06-26"; + version = "0.7.7"; goPackagePath = "github.com/mailru/easyjson"; + goDeps = ./deps.nix; src = fetchFromGitHub { owner = "mailru"; repo = "easyjson"; - rev = "b2ccc519800e761ac8000b95e5d57c80a897ff9e"; - sha256 = "0q85h383mhbkcjm2vqm72bi8n2252fv3c56q3lclzb8n2crnjcdk"; + rev = "v${version}"; + sha256 = "0clifkvvy8f45rv3cdyv58dglzagyvfcqb63wl6rij30c5j2pzc1"; }; meta = with lib; { homepage = "https://github.com/mailru/easyjson"; description = "Fast JSON serializer for golang"; license = licenses.mit; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; }; } diff --git a/pkgs/development/tools/easyjson/deps.nix b/pkgs/development/tools/easyjson/deps.nix new file mode 100644 index 00000000000..d5d7e1f15bc --- /dev/null +++ b/pkgs/development/tools/easyjson/deps.nix @@ -0,0 +1,11 @@ +[ + { + goPackagePath = "github.com/josharian/intern"; + fetch = { + type = "git"; + url = "https://github.com/josharian/intern"; + rev = "8e6ff32b3e7c0b018c43953085fe2ac330fe9acd"; + sha256 = "1za48ppvwd5vg8vv25ldmwz1biwpb3p6qhf8vazhsfdg9m07951c"; + }; + } +] diff --git a/pkgs/development/tools/git-series/default.nix b/pkgs/development/tools/git-series/default.nix index 752cefad3c2..31d1c635512 100644 --- a/pkgs/development/tools/git-series/default.nix +++ b/pkgs/development/tools/git-series/default.nix @@ -1,54 +1,36 @@ -{ lib, fetchFromGitHub, fetchpatch, rustPlatform -, openssl, cmake, perl, pkg-config, zlib, curl, libgit2, libssh2 +{ lib, rustPlatform, fetchFromGitHub +, pkg-config, openssl, zlib, curl, libgit2, libssh2 }: -with rustPlatform; - -buildRustPackage rec { - version = "0.9.1"; +rustPlatform.buildRustPackage rec { pname = "git-series"; + version = "unstable-2019-10-15"; src = fetchFromGitHub { owner = "git-series"; repo = "git-series"; - rev = version; - sha256 = "07mgq5h6r1gf3jflbv2khcz32bdazw7z1s8xcsafdarnm13ps014"; + rev = "c570a015e15214be46a7fd06ba08526622738e20"; + sha256 = "1i0m2b7ma6xvkg95k57gaj1wpc1rfvka6h8jr5hglxmqqbz6cb6w"; }; - cargoSha256 = "0870f4rd98fbmyl8524ivfg3xf4qpzb1x68q1idnl47mmf68pyx8"; - - cargoPatches = [ - (fetchpatch { - url = "https://github.com/Mic92/git-series/commit/3aa30a47d74ebf90b444dccdf8c153f07f119483.patch"; - sha256 = "06v8br9skvy75kcw2zgbswxyk82sqzc8smkbqpzmivxlc2i9rnh0"; - }) - # Update Cargo.lock to allow using OpenSSL 1.1 - (fetchpatch { - url = "https://github.com/edef1c/git-series/commit/11fe70ffcc18200e5f2a159c36aab070e8ff4228.patch"; - sha256 = "0clwllf9mrhq86dhzyyhkw1q2ggpgqpw7s05dvp3gj9zhfsyya4s"; - }) - # Cargo.lock: Update url, which fixes incompatibility with NLL - (fetchpatch { - url = "https://github.com/edef1c/git-series/commit/27ff2ecf2d615dae1113709eca0e43596de12ac4.patch"; - sha256 = "1byjbdcx56nd0bbwz078bl340rk334mb34cvaa58h76byvhpkw10"; - }) - ]; + cargoSha256 = "1hmx14z3098c98achgii0jkcm4474iw762rmib77amcsxj73zzdh"; + + nativeBuildInputs = [ pkg-config ]; + buildInputs = [ openssl zlib curl libgit2 libssh2 ]; LIBGIT2_SYS_USE_PKG_CONFIG = true; LIBSSH2_SYS_USE_PKG_CONFIG = true; - nativeBuildInputs = [ cmake pkg-config perl ]; - buildInputs = [ openssl zlib curl libgit2 libssh2 ]; - postBuild = '' + postInstall = '' install -D "$src/git-series.1" "$out/man/man1/git-series.1" ''; meta = with lib; { description = "A tool to help with formatting git patches for review on mailing lists"; longDescription = '' - git series tracks changes to a patch series over time. git - series also tracks a cover letter for the patch series, - formats the series for email, and prepares pull requests. + git series tracks changes to a patch series over time. git + series also tracks a cover letter for the patch series, + formats the series for email, and prepares pull requests. ''; homepage = "https://github.com/git-series/git-series"; diff --git a/pkgs/development/tools/minizinc/default.nix b/pkgs/development/tools/minizinc/default.nix index 131c899dcfb..b74add360be 100644 --- a/pkgs/development/tools/minizinc/default.nix +++ b/pkgs/development/tools/minizinc/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub, cmake, flex, bison }: stdenv.mkDerivation rec { pname = "minizinc"; - version = "2.6.1"; + version = "2.6.2"; nativeBuildInputs = [ cmake flex bison ]; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { owner = "MiniZinc"; repo = "libminizinc"; rev = version; - sha256 = "sha256-JCR2wvtMNyHBIIqrH5eBc0CIOVyo8mnPUZXtwjJt3sw="; + sha256 = "sha256-0yOZZJMDMmIBCJ2ZU3AfGvFSANqHNFN+UHYMI0nogOQ="; }; meta = with lib; { diff --git a/pkgs/development/tools/misc/binutils/0001-Revert-libtool.m4-fix-nm-BSD-flag-detection.patch b/pkgs/development/tools/misc/binutils/0001-Revert-libtool.m4-fix-nm-BSD-flag-detection.patch new file mode 100644 index 00000000000..f9c6e88d97b --- /dev/null +++ b/pkgs/development/tools/misc/binutils/0001-Revert-libtool.m4-fix-nm-BSD-flag-detection.patch @@ -0,0 +1,137 @@ +From beca4a2c25ee86e4020f8b8bddc4d8e0ed3430b3 Mon Sep 17 00:00:00 2001 +From: Andrew Childs <andrew.childs@bibo.com.ph> +Date: Tue, 22 Feb 2022 11:28:04 +0900 +Subject: [PATCH] Revert "libtool.m4: fix nm BSD flag detection" + +This reverts commit bef9ef8ca0f941d743c77cc55b5fe7985990b2a7. +--- + ChangeLog | 9 ------ + libtool.m4 | 88 ++++++++++++++++++++++++++---------------------------- + 2 files changed, 43 insertions(+), 54 deletions(-) + +diff --git a/ChangeLog b/ChangeLog +index 18e8b6835da..c12f07403c3 100644 +--- a/ChangeLog ++++ b/ChangeLog +@@ -375,15 +375,6 @@ + + * src-release.sh (GDB_SUPPPORT_DIRS): Add libbacktrace. + +-2021-09-27 Nick Alcock <nick.alcock@oracle.com> +- +- PR libctf/27967 +- * libtool.m4 (LT_PATH_NM): Try BSDization flags with a user-provided +- NM, if there is one. Run nm on itself, not on /dev/null, to avoid +- errors from nms that refuse to work on non-regular files. Remove +- other workarounds for this problem. Strip out blank lines from the +- nm output. +- + 2021-09-27 Nick Alcock <nick.alcock@oracle.com> + + PR libctf/27967 +diff --git a/libtool.m4 b/libtool.m4 +index a216bb14e99..7a711249304 100644 +--- a/libtool.m4 ++++ b/libtool.m4 +@@ -3200,55 +3200,53 @@ _LT_DECL([], [file_magic_cmd], [1], + + # LT_PATH_NM + # ---------- +-# find the pathname to a BSD- or MS-compatible name lister, and any flags +-# needed to make it compatible ++# find the pathname to a BSD- or MS-compatible name lister + AC_DEFUN([LT_PATH_NM], + [AC_REQUIRE([AC_PROG_CC])dnl + AC_CACHE_CHECK([for BSD- or MS-compatible name lister (nm)], lt_cv_path_NM, + [if test -n "$NM"; then +- # Let the user override the nm to test. +- lt_nm_to_check="$NM" +- else +- lt_nm_to_check="${ac_tool_prefix}nm" +- if test -n "$ac_tool_prefix" && test "$build" = "$host"; then +- lt_nm_to_check="$lt_nm_to_check nm" +- fi +- fi +- for lt_tmp_nm in $lt_nm_to_check; do +- lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR +- for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do +- IFS="$lt_save_ifs" +- test -z "$ac_dir" && ac_dir=. +- case "$lt_tmp_nm" in +- */*|*\\*) tmp_nm="$lt_tmp_nm";; +- *) tmp_nm="$ac_dir/$lt_tmp_nm";; +- esac +- if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then +- # Check to see if the nm accepts a BSD-compat flag. +- # Adding the `sed 1q' prevents false positives on HP-UX, which says: +- # nm: unknown option "B" ignored +- case `"$tmp_nm" -B "$tmp_nm" 2>&1 | grep -v '^ *$' | sed '1q'` in +- *$tmp_nm*) lt_cv_path_NM="$tmp_nm -B" +- break +- ;; +- *) +- case `"$tmp_nm" -p "$tmp_nm" 2>&1 | grep -v '^ *$' | sed '1q'` in +- *$tmp_nm*) +- lt_cv_path_NM="$tmp_nm -p" +- break +- ;; +- *) +- lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but +- continue # so that we can try to find one that supports BSD flags +- ;; +- esac +- ;; +- esac +- fi +- done +- IFS="$lt_save_ifs" +- done +- : ${lt_cv_path_NM=no}]) ++ # Let the user override the test. ++ lt_cv_path_NM="$NM" ++else ++ lt_nm_to_check="${ac_tool_prefix}nm" ++ if test -n "$ac_tool_prefix" && test "$build" = "$host"; then ++ lt_nm_to_check="$lt_nm_to_check nm" ++ fi ++ for lt_tmp_nm in $lt_nm_to_check; do ++ lt_save_ifs="$IFS"; IFS=$PATH_SEPARATOR ++ for ac_dir in $PATH /usr/ccs/bin/elf /usr/ccs/bin /usr/ucb /bin; do ++ IFS="$lt_save_ifs" ++ test -z "$ac_dir" && ac_dir=. ++ tmp_nm="$ac_dir/$lt_tmp_nm" ++ if test -f "$tmp_nm" || test -f "$tmp_nm$ac_exeext" ; then ++ # Check to see if the nm accepts a BSD-compat flag. ++ # Adding the `sed 1q' prevents false positives on HP-UX, which says: ++ # nm: unknown option "B" ignored ++ # Tru64's nm complains that /dev/null is an invalid object file ++ case `"$tmp_nm" -B /dev/null 2>&1 | sed '1q'` in ++ */dev/null* | *'Invalid file or object type'*) ++ lt_cv_path_NM="$tmp_nm -B" ++ break ++ ;; ++ *) ++ case `"$tmp_nm" -p /dev/null 2>&1 | sed '1q'` in ++ */dev/null*) ++ lt_cv_path_NM="$tmp_nm -p" ++ break ++ ;; ++ *) ++ lt_cv_path_NM=${lt_cv_path_NM="$tmp_nm"} # keep the first match, but ++ continue # so that we can try to find one that supports BSD flags ++ ;; ++ esac ++ ;; ++ esac ++ fi ++ done ++ IFS="$lt_save_ifs" ++ done ++ : ${lt_cv_path_NM=no} ++fi]) + if test "$lt_cv_path_NM" != "no"; then + NM="$lt_cv_path_NM" + else +-- +2.34.1 + diff --git a/pkgs/development/tools/misc/binutils/0001-libtool.m4-update-macos-version-detection-block.patch b/pkgs/development/tools/misc/binutils/0001-libtool.m4-update-macos-version-detection-block.patch new file mode 100644 index 00000000000..e601be3a330 --- /dev/null +++ b/pkgs/development/tools/misc/binutils/0001-libtool.m4-update-macos-version-detection-block.patch @@ -0,0 +1,47 @@ +From 33a8dc728eb5da3e1d3439c96810d1f6b2660b89 Mon Sep 17 00:00:00 2001 +From: Andrew Childs <andrew.childs@bibo.com.ph> +Date: Tue, 22 Feb 2022 12:24:46 +0900 +Subject: [PATCH] libtool.m4: update macos version detection block + +Includes upstream change +9e8c882517082fe5755f2524d23efb02f1522490 +--- + libtool.m4 | 21 ++++++++------------- + 1 file changed, 8 insertions(+), 13 deletions(-) + +diff --git a/libtool.m4 b/libtool.m4 +index 7a711249304..f452efb4300 100644 +--- a/libtool.m4 ++++ b/libtool.m4 +@@ -996,20 +996,15 @@ _LT_EOF + ]) + case $host_os in + rhapsody* | darwin1.[[012]]) +- _lt_dar_allow_undefined='${wl}-undefined ${wl}suppress' ;; ++ _lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;; + darwin1.*) +- _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; +- darwin*) # darwin 5.x on +- # if running on 10.5 or later, the deployment target defaults +- # to the OS version, if on x86, and 10.4, the deployment +- # target defaults to 10.4. Don't you love it? +- case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in +- 10.0,*86*-darwin8*|10.0,*-darwin[[91]]*) +- _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;; +- 10.[[012]][[,.]]*) +- _lt_dar_allow_undefined='${wl}-flat_namespace ${wl}-undefined ${wl}suppress' ;; +- 10.*) +- _lt_dar_allow_undefined='${wl}-undefined ${wl}dynamic_lookup' ;; ++ _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; ++ darwin*) ++ case $MACOSX_DEPLOYMENT_TARGET,$host in ++ 10.[[012]],*|,*powerpc*-darwin[[5-8]]*) ++ _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; ++ *) ++ _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; + esac + ;; + esac +-- +2.34.1 + diff --git a/pkgs/development/tools/misc/binutils/CVE-2020-35448.patch b/pkgs/development/tools/misc/binutils/CVE-2020-35448.patch deleted file mode 100644 index 2eba7b51849..00000000000 --- a/pkgs/development/tools/misc/binutils/CVE-2020-35448.patch +++ /dev/null @@ -1,77 +0,0 @@ -From 8642dafaef21aa6747cec01df1977e9c52eb4679 Mon Sep 17 00:00:00 2001 -From: Alan Modra <amodra@gmail.com> -Date: Fri, 4 Sep 2020 19:19:18 +0930 -Subject: [PATCH] PR26574, heap buffer overflow in - _bfd_elf_slurp_secondary_reloc_section - -A horribly fuzzed object with section headers inside the ELF header. -Disallow that, and crazy reloc sizes. - - PR 26574 - * elfcode.h (elf_object_p): Sanity check section header offset. - * elf.c (_bfd_elf_slurp_secondary_reloc_section): Sanity check - sh_entsize. ---- - bfd/elf.c | 4 +++- - bfd/elfcode.h | 8 ++++---- - 3 files changed, 14 insertions(+), 5 deletions(-) - -diff --git a/bfd/elf.c b/bfd/elf.c -index ac2095f787d..5a02f8dc309 100644 ---- a/bfd/elf.c -+++ b/bfd/elf.c -@@ -12576,7 +12576,9 @@ _bfd_elf_slurp_secondary_reloc_section (bfd * abfd, - Elf_Internal_Shdr * hdr = & elf_section_data (relsec)->this_hdr; - - if (hdr->sh_type == SHT_SECONDARY_RELOC -- && hdr->sh_info == (unsigned) elf_section_data (sec)->this_idx) -+ && hdr->sh_info == (unsigned) elf_section_data (sec)->this_idx -+ && (hdr->sh_entsize == ebd->s->sizeof_rel -+ || hdr->sh_entsize == ebd->s->sizeof_rela)) - { - bfd_byte * native_relocs; - bfd_byte * native_reloc; -diff --git a/bfd/elfcode.h b/bfd/elfcode.h -index 2ed2f135c34..606ff64fd4d 100644 ---- a/bfd/elfcode.h -+++ b/bfd/elfcode.h -@@ -571,7 +571,7 @@ elf_object_p (bfd *abfd) - - /* If this is a relocatable file and there is no section header - table, then we're hosed. */ -- if (i_ehdrp->e_shoff == 0 && i_ehdrp->e_type == ET_REL) -+ if (i_ehdrp->e_shoff < sizeof (x_ehdr) && i_ehdrp->e_type == ET_REL) - goto got_wrong_format_error; - - /* As a simple sanity check, verify that what BFD thinks is the -@@ -581,7 +581,7 @@ elf_object_p (bfd *abfd) - goto got_wrong_format_error; - - /* Further sanity check. */ -- if (i_ehdrp->e_shoff == 0 && i_ehdrp->e_shnum != 0) -+ if (i_ehdrp->e_shoff < sizeof (x_ehdr) && i_ehdrp->e_shnum != 0) - goto got_wrong_format_error; - - ebd = get_elf_backend_data (abfd); -@@ -618,7 +618,7 @@ elf_object_p (bfd *abfd) - && ebd->elf_osabi != ELFOSABI_NONE) - goto got_wrong_format_error; - -- if (i_ehdrp->e_shoff != 0) -+ if (i_ehdrp->e_shoff >= sizeof (x_ehdr)) - { - file_ptr where = (file_ptr) i_ehdrp->e_shoff; - -@@ -819,7 +819,7 @@ elf_object_p (bfd *abfd) - } - } - -- if (i_ehdrp->e_shstrndx != 0 && i_ehdrp->e_shoff != 0) -+ if (i_ehdrp->e_shstrndx != 0 && i_ehdrp->e_shoff >= sizeof (x_ehdr)) - { - unsigned int num_sec; - --- -2.27.0 - - diff --git a/pkgs/development/tools/misc/binutils/CVE-2021-3487.patch b/pkgs/development/tools/misc/binutils/CVE-2021-3487.patch deleted file mode 100644 index 004271bd45a..00000000000 --- a/pkgs/development/tools/misc/binutils/CVE-2021-3487.patch +++ /dev/null @@ -1,73 +0,0 @@ -From: Nick Clifton <nickc@redhat.com> -Date: Thu, 26 Nov 2020 17:08:33 +0000 (+0000) -Subject: Prevent a memory allocation failure when parsing corrupt DWARF debug sections. -X-Git-Tag: binutils-2_36~485 -X-Git-Url: https://sourceware.org/git/?p=binutils-gdb.git;a=commitdiff_plain;h=647cebce12a6b0a26960220caff96ff38978cf24;hp=239ca5e497dda2c151009d664d500086a5c2173a - -Prevent a memory allocation failure when parsing corrupt DWARF debug sections. - - PR 26946 - * dwarf2.c (read_section): Check for debug sections with excessive - sizes. ---- - -diff --git a/bfd/dwarf2.c b/bfd/dwarf2.c -index 977bf43a6a1..8bbfc81d3e7 100644 ---- a/bfd/dwarf2.c -+++ b/bfd/dwarf2.c -@@ -531,22 +531,24 @@ read_section (bfd * abfd, - bfd_byte ** section_buffer, - bfd_size_type * section_size) - { -- asection *msec; - const char *section_name = sec->uncompressed_name; - bfd_byte *contents = *section_buffer; -- bfd_size_type amt; - - /* The section may have already been read. */ - if (contents == NULL) - { -+ bfd_size_type amt; -+ asection *msec; -+ ufile_ptr filesize; -+ - msec = bfd_get_section_by_name (abfd, section_name); -- if (! msec) -+ if (msec == NULL) - { - section_name = sec->compressed_name; - if (section_name != NULL) - msec = bfd_get_section_by_name (abfd, section_name); - } -- if (! msec) -+ if (msec == NULL) - { - _bfd_error_handler (_("DWARF error: can't find %s section."), - sec->uncompressed_name); -@@ -554,12 +556,23 @@ read_section (bfd * abfd, - return FALSE; - } - -- *section_size = msec->rawsize ? msec->rawsize : msec->size; -+ amt = bfd_get_section_limit_octets (abfd, msec); -+ filesize = bfd_get_file_size (abfd); -+ if (amt >= filesize) -+ { -+ /* PR 26946 */ -+ _bfd_error_handler (_("DWARF error: section %s is larger than its filesize! (0x%lx vs 0x%lx)"), -+ section_name, (long) amt, (long) filesize); -+ bfd_set_error (bfd_error_bad_value); -+ return FALSE; -+ } -+ *section_size = amt; - /* Paranoia - alloc one extra so that we can make sure a string - section is NUL terminated. */ -- amt = *section_size + 1; -+ amt += 1; - if (amt == 0) - { -+ /* Paranoia - this should never happen. */ - bfd_set_error (bfd_error_no_memory); - return FALSE; - } - diff --git a/pkgs/development/tools/misc/binutils/CVE-2021-45078.patch b/pkgs/development/tools/misc/binutils/CVE-2021-45078.patch deleted file mode 100644 index af1c95fac80..00000000000 --- a/pkgs/development/tools/misc/binutils/CVE-2021-45078.patch +++ /dev/null @@ -1,239 +0,0 @@ -based on upstream https://sourceware.org/git/?p=binutils-gdb.git;a=patch;h=161e87d12167b1e36193385485c1f6ce92f74f02;hp=d5c94731766bf4f276146fd29c1df8eebc2aaf69 - -adapted by ris to apply to 2.35.2 (simply capitalizing booleans) - -diff --git a/binutils/stabs.c b/binutils/stabs.c -index 274bfb0e7fa..83ee3ea5fa4 100644 ---- a/binutils/stabs.c -+++ b/binutils/stabs.c -@@ -202,7 +202,7 @@ static debug_type stab_find_type (void *, struct stab_handle *, const int *); - static bool stab_record_type - (void *, struct stab_handle *, const int *, debug_type); - static debug_type stab_xcoff_builtin_type -- (void *, struct stab_handle *, int); -+ (void *, struct stab_handle *, unsigned int); - static debug_type stab_find_tagged_type - (void *, struct stab_handle *, const char *, int, enum debug_type_kind); - static debug_type *stab_demangle_argtypes -@@ -3496,166 +3496,167 @@ stab_record_type (void *dhandle ATTRIBUTE_UNUSED, struct stab_handle *info, - - static debug_type - stab_xcoff_builtin_type (void *dhandle, struct stab_handle *info, -- int typenum) -+ unsigned int typenum) - { - debug_type rettype; - const char *name; - -- if (typenum >= 0 || typenum < -XCOFF_TYPE_COUNT) -+ typenum = -typenum - 1; -+ if (typenum >= XCOFF_TYPE_COUNT) - { -- fprintf (stderr, _("Unrecognized XCOFF type %d\n"), typenum); -+ fprintf (stderr, _("Unrecognized XCOFF type %d\n"), -typenum - 1); - return DEBUG_TYPE_NULL; - } -- if (info->xcoff_types[-typenum] != NULL) -- return info->xcoff_types[-typenum]; -+ if (info->xcoff_types[typenum] != NULL) -+ return info->xcoff_types[typenum]; - -- switch (-typenum) -+ switch (typenum) - { -- case 1: -+ case 0: - /* The size of this and all the other types are fixed, defined - by the debugging format. */ - name = "int"; - rettype = debug_make_int_type (dhandle, 4, FALSE); - break; -- case 2: -+ case 1: - name = "char"; - rettype = debug_make_int_type (dhandle, 1, FALSE); - break; -- case 3: -+ case 2: - name = "short"; - rettype = debug_make_int_type (dhandle, 2, FALSE); - break; -- case 4: -+ case 3: - name = "long"; - rettype = debug_make_int_type (dhandle, 4, FALSE); - break; -- case 5: -+ case 4: - name = "unsigned char"; - rettype = debug_make_int_type (dhandle, 1, TRUE); - break; -- case 6: -+ case 5: - name = "signed char"; - rettype = debug_make_int_type (dhandle, 1, FALSE); - break; -- case 7: -+ case 6: - name = "unsigned short"; - rettype = debug_make_int_type (dhandle, 2, TRUE); - break; -- case 8: -+ case 7: - name = "unsigned int"; - rettype = debug_make_int_type (dhandle, 4, TRUE); - break; -- case 9: -+ case 8: - name = "unsigned"; - rettype = debug_make_int_type (dhandle, 4, TRUE); - break; -- case 10: -+ case 9: - name = "unsigned long"; - rettype = debug_make_int_type (dhandle, 4, TRUE); - break; -- case 11: -+ case 10: - name = "void"; - rettype = debug_make_void_type (dhandle); - break; -- case 12: -+ case 11: - /* IEEE single precision (32 bit). */ - name = "float"; - rettype = debug_make_float_type (dhandle, 4); - break; -- case 13: -+ case 12: - /* IEEE double precision (64 bit). */ - name = "double"; - rettype = debug_make_float_type (dhandle, 8); - break; -- case 14: -+ case 13: - /* This is an IEEE double on the RS/6000, and different machines - with different sizes for "long double" should use different - negative type numbers. See stabs.texinfo. */ - name = "long double"; - rettype = debug_make_float_type (dhandle, 8); - break; -- case 15: -+ case 14: - name = "integer"; - rettype = debug_make_int_type (dhandle, 4, FALSE); - break; -- case 16: -+ case 15: - name = "boolean"; - rettype = debug_make_bool_type (dhandle, 4); - break; -- case 17: -+ case 16: - name = "short real"; - rettype = debug_make_float_type (dhandle, 4); - break; -- case 18: -+ case 17: - name = "real"; - rettype = debug_make_float_type (dhandle, 8); - break; -- case 19: -+ case 18: - /* FIXME */ - name = "stringptr"; - rettype = NULL; - break; -- case 20: -+ case 19: - /* FIXME */ - name = "character"; - rettype = debug_make_int_type (dhandle, 1, TRUE); - break; -- case 21: -+ case 20: - name = "logical*1"; - rettype = debug_make_bool_type (dhandle, 1); - break; -- case 22: -+ case 21: - name = "logical*2"; - rettype = debug_make_bool_type (dhandle, 2); - break; -- case 23: -+ case 22: - name = "logical*4"; - rettype = debug_make_bool_type (dhandle, 4); - break; -- case 24: -+ case 23: - name = "logical"; - rettype = debug_make_bool_type (dhandle, 4); - break; -- case 25: -+ case 24: - /* Complex type consisting of two IEEE single precision values. */ - name = "complex"; - rettype = debug_make_complex_type (dhandle, 8); - break; -- case 26: -+ case 25: - /* Complex type consisting of two IEEE double precision values. */ - name = "double complex"; - rettype = debug_make_complex_type (dhandle, 16); - break; -- case 27: -+ case 26: - name = "integer*1"; - rettype = debug_make_int_type (dhandle, 1, FALSE); - break; -- case 28: -+ case 27: - name = "integer*2"; - rettype = debug_make_int_type (dhandle, 2, FALSE); - break; -- case 29: -+ case 28: - name = "integer*4"; - rettype = debug_make_int_type (dhandle, 4, FALSE); - break; -- case 30: -+ case 29: - /* FIXME */ - name = "wchar"; - rettype = debug_make_int_type (dhandle, 2, FALSE); - break; -- case 31: -+ case 30: - name = "long long"; - rettype = debug_make_int_type (dhandle, 8, FALSE); - break; -- case 32: -+ case 31: - name = "unsigned long long"; - rettype = debug_make_int_type (dhandle, 8, TRUE); - break; -- case 33: -+ case 32: - name = "logical*8"; - rettype = debug_make_bool_type (dhandle, 8); - break; -- case 34: -+ case 33: - name = "integer*8"; - rettype = debug_make_int_type (dhandle, 8, FALSE); - break; -@@ -3664,9 +3665,7 @@ stab_xcoff_builtin_type (void *dhandle, struct stab_handle *info, - } - - rettype = debug_name_type (dhandle, name, rettype); -- -- info->xcoff_types[-typenum] = rettype; -- -+ info->xcoff_types[typenum] = rettype; - return rettype; - } - --- -2.27.0 - diff --git a/pkgs/development/tools/misc/binutils/bfd-elf-Dont-read-non-existing-secondary-relocs.patch b/pkgs/development/tools/misc/binutils/bfd-elf-Dont-read-non-existing-secondary-relocs.patch deleted file mode 100644 index c166066c980..00000000000 --- a/pkgs/development/tools/misc/binutils/bfd-elf-Dont-read-non-existing-secondary-relocs.patch +++ /dev/null @@ -1,26 +0,0 @@ -X-Git-Url: https://sourceware.org/git/?p=binutils-gdb.git;a=blobdiff_plain;f=bfd%2Felf.c;h=af62aadc3d446cd5b1f0201b207c90c22e7809b1;hp=36733e080dd9d9be28b576b246aaf5bd8c8569c7;hb=84fd26d8209e99fc3a432dd0b09b6c053de1ce65;hpb=abe2a28aaa7a2bfd0f3061c72a98eb898976b721 - -diff --git a/bfd/elf.c b/bfd/elf.c -index 36733e080dd..af62aadc3d4 100644 ---- a/bfd/elf.c -+++ b/bfd/elf.c -@@ -2454,6 +2454,8 @@ bfd_section_from_shdr (bfd *abfd, unsigned int shindex) - "for section %pA found - ignoring"), - abfd, name, target_sect); - } -+ else -+ esdt->has_secondary_relocs = TRUE; - goto success; - } - -@@ -12587,6 +12589,9 @@ _bfd_elf_slurp_secondary_reloc_section (bfd * abfd, - #endif - r_sym = elf32_r_sym; - -+ if (!elf_section_data (sec)->has_secondary_relocs) -+ return TRUE; -+ - /* Discover if there are any secondary reloc sections - associated with SEC. */ - for (relsec = abfd->sections; relsec != NULL; relsec = relsec->next) - diff --git a/pkgs/development/tools/misc/binutils/build-components-separately.patch b/pkgs/development/tools/misc/binutils/build-components-separately.patch index 38fa4934a28..0b4162d8488 100644 --- a/pkgs/development/tools/misc/binutils/build-components-separately.patch +++ b/pkgs/development/tools/misc/binutils/build-components-separately.patch @@ -1,8 +1,8 @@ diff --git a/bfd/configure.ac b/bfd/configure.ac -index c5bfbd5d..45ad4c26 100644 +index fec067b2135..377e1f5443f 100644 --- a/bfd/configure.ac +++ b/bfd/configure.ac -@@ -278,31 +278,19 @@ AC_CACHE_CHECK(linker --as-needed support, bfd_cv_ld_as_needed, +@@ -292,30 +292,16 @@ AC_CACHE_CHECK(linker --as-needed support, bfd_cv_ld_as_needed, LT_LIB_M @@ -21,24 +21,22 @@ index c5bfbd5d..45ad4c26 100644 - if test -n "$x"; then - SHARED_LIBADD="-L`pwd`/../libiberty/pic -liberty" - fi +-fi - + SHARED_LIBADD="$SHARED_LIBADD $LIBINTL" + +-if test "$enable_shared" = "yes"; then case "${host}" in # More hacks to build DLLs on Windows. *-*-cygwin*) SHARED_LDFLAGS="-no-undefined" -- SHARED_LIBADD="-L`pwd`/../libiberty -liberty -L`pwd`/../intl -lintl -lcygwin -lkernel32" -+ SHARED_LIBADD="-liberty -lintl -lcygwin -lkernel32" - ;; - - # Use built-in libintl on macOS, since it is not provided by libc. - *-*-darwin*) -- SHARED_LIBADD="-L`pwd`/../libiberty/pic -L`pwd`/../intl -liberty -lintl" -+ SHARED_LIBADD="-liberty -lintl" +- SHARED_LIBADD="-L`pwd`/../libiberty -liberty $SHARED_LIBADD -lcygwin -lkernel32" ++ SHARED_LIBADD="-liberty $SHARED_LIBADD -lcygwin -lkernel32" ;; esac diff --git a/opcodes/Makefile.am b/opcodes/Makefile.am -index 4f06074a..6836c589 100644 +index 0e04b4c05c4..848a02662e7 100644 --- a/opcodes/Makefile.am +++ b/opcodes/Makefile.am @@ -51,7 +51,7 @@ libopcodes_la_LDFLAGS += -rpath $(rpath_bfdlibdir) @@ -50,7 +48,7 @@ index 4f06074a..6836c589 100644 BUILD_LIBS = @BUILD_LIBS@ BUILD_LIB_DEPS = @BUILD_LIB_DEPS@ -@@ -301,7 +301,7 @@ OFILES = @BFD_MACHINES@ +@@ -303,7 +303,7 @@ OFILES = @BFD_MACHINES@ # development.sh is used to determine -Werror default. CONFIG_STATUS_DEPENDENCIES = $(BFDDIR)/development.sh @@ -59,10 +57,7 @@ index 4f06074a..6836c589 100644 disassemble.lo: disassemble.c if am__fastdepCC -@@ -322,12 +322,21 @@ libopcodes_la_SOURCES = dis-buf.c disassemble.c dis-init.c - # old version of libbfd, or to pick up libbfd for the wrong architecture - # if host != build. So for building with shared libraries we use a - # hardcoded path to libbfd.so instead of relying on the entries in libbfd.la. +@@ -327,9 +327,18 @@ libopcodes_la_SOURCES = dis-buf.c disassemble.c dis-init.c -libopcodes_la_DEPENDENCIES = $(OFILES) @SHARED_DEPENDENCIES@ +libopcodes_la_DEPENDENCIES = $(OFILES) @SHARED_DEPENDENCIES@ libtool-soversion libopcodes_la_LIBADD = $(OFILES) @SHARED_LIBADD@ @@ -84,18 +79,19 @@ index 4f06074a..6836c589 100644 # the build directory so that we don't have to convert all the # programs that use libopcodes.a simultaneously. This is a hack which diff --git a/opcodes/configure.ac b/opcodes/configure.ac -index 00be9c88..6e589ae4 100644 +index e564f067334..5da62a3d58b 100644 --- a/opcodes/configure.ac +++ b/opcodes/configure.ac -@@ -86,6 +86,7 @@ AC_PROG_INSTALL +@@ -98,6 +98,8 @@ BFD_64_BIT + AC_SUBST(HDEFINES) + AC_PROG_INSTALL - AC_CHECK_HEADERS(string.h strings.h stdlib.h limits.h) - ACX_HEADER_STRING +GCC_HEADER_STDINT(bfd_stdint.h) - ++ AC_CHECK_DECLS([basename, stpcpy]) -@@ -137,61 +138,27 @@ AC_CACHE_CHECK(linker --as-needed support, bfd_cv_ld_as_needed, + # Check if sigsetjmp is available. Using AC_CHECK_FUNCS won't do +@@ -148,44 +150,21 @@ AC_CACHE_CHECK(linker --as-needed support, bfd_cv_ld_as_needed, LT_LIB_M @@ -122,7 +118,7 @@ index 00be9c88..6e589ae4 100644 -SHARED_LIBADD= +SHARED_LIBADD=-liberty SHARED_DEPENDENCIES= - if test "$enable_shared" = "yes"; then +-if test "$enable_shared" = "yes"; then -# When building a shared libopcodes, link against the pic version of libiberty -# so that apps that use libopcodes won't need libiberty just to satisfy any -# libopcodes references. @@ -131,32 +127,27 @@ index 00be9c88..6e589ae4 100644 # Note that linking against libbfd as we do here, which is itself linked # against libiberty, may not satisfy all the libopcodes libiberty references # since libbfd may not pull in the entirety of libiberty. + # Also, jam libintl into the right place in all of this: after libiberty, + # which uses it, but before -lcygwin, which it uses. -changequote(,)dnl - x=`sed -n -e 's/^[ ]*PICFLAG[ ]*=[ ]*//p' < ../libiberty/Makefile | sed -n '$p'` -changequote([,])dnl - if test -n "$x"; then - SHARED_LIBADD="-L`pwd`/../libiberty/pic -liberty" - fi -- +-fi + + SHARED_LIBADD="$SHARED_LIBADD $LIBINTL" + +@@ -193,11 +172,10 @@ if test "$enable_shared" = "yes"; then case "${host}" in *-*-cygwin*) SHARED_LDFLAGS="-no-undefined" -- SHARED_LIBADD="-L`pwd`/../bfd -lbfd -L`pwd`/../libiberty -liberty -L`pwd`/../intl -lintl -lcygwin" -+ SHARED_LIBADD="-lbfd -liberty -lintl -lcygwin" +- SHARED_LIBADD="-L`pwd`/../bfd -lbfd -L`pwd`/../libiberty -liberty $SHARED_LIBADD" ++ SHARED_LIBADD="-lbfd -liberty $SHARED_LIBADD" ;; -- *-*-darwin*) -- SHARED_LIBADD="-Wl,`pwd`/../bfd/.libs/libbfd.dylib ${SHARED_LIBADD}" -- SHARED_DEPENDENCIES="../bfd/libbfd.la" -- ;; *) -- case "$host_vendor" in -- hp) -- SHARED_LIBADD="-Wl,`pwd`/../bfd/.libs/libbfd.sl ${SHARED_LIBADD}" -- ;; -- *) -- SHARED_LIBADD="-Wl,`pwd`/../bfd/.libs/libbfd.so ${SHARED_LIBADD}" -- ;; -- esac +- SHARED_LIBADD="../bfd/libbfd.la ${SHARED_LIBADD}" - SHARED_DEPENDENCIES="../bfd/libbfd.la" + SHARED_LIBADD="-lbfd ${SHARED_LIBADD}" ;; diff --git a/pkgs/development/tools/misc/binutils/default.nix b/pkgs/development/tools/misc/binutils/default.nix index ff89f1ad493..93b018b0d8b 100644 --- a/pkgs/development/tools/misc/binutils/default.nix +++ b/pkgs/development/tools/misc/binutils/default.nix @@ -2,65 +2,78 @@ let execFormatIsELF = platform: platform.parsed.kernel.execFormat.name == "elf"; in -{ stdenv, lib, buildPackages -, fetchFromGitHub, fetchurl, zlib, autoreconfHook, gettext -# Enabling all targets increases output size to a multiple. -, withAllTargets ? false, libbfd, libopcodes -, enableShared ? !stdenv.hostPlatform.isStatic -, noSysDirs -, gold ? execFormatIsELF stdenv.targetPlatform -, bison ? null +{ stdenv +, autoreconfHook +, autoconf269, automake, libtool +, bison +, buildPackages +, fetchFromGitHub +, fetchurl , flex -, texinfo +, gettext +, lib +, noSysDirs , perl , substitute +, texinfo +, zlib + +, enableGold ? execFormatIsELF stdenv.targetPlatform +, enableShared ? !stdenv.hostPlatform.isStatic + # WARN: Enabling all targets increases output size to a multiple. +, withAllTargets ? false, libbfd, libopcodes }: -# configure silently disables ld.gold if it's unsupported, -# so we need to make sure that intent matches result ourselves. -assert gold -> execFormatIsELF stdenv.targetPlatform; +# WARN: configure silently disables ld.gold if it's unsupported, so we need to +# make sure that intent matches result ourselves. +assert enableGold -> execFormatIsELF stdenv.targetPlatform; -# Note: this package is used for bootstrapping fetchurl, and thus -# cannot use fetchpatch! All mutable patches (generated by GitHub or -# cgit) that are needed here should be included directly in Nixpkgs as -# files. let - reuseLibs = enableShared && withAllTargets; - - version = "2.35.2"; - basename = "binutils"; - # The targetPrefix prepended to binary names to allow multiple binuntils on the - # PATH to both be usable. - targetPrefix = lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) - "${stdenv.targetPlatform.config}-"; - vc4-binutils-src = fetchFromGitHub { - owner = "itszor"; - repo = "binutils-vc4"; - rev = "708acc851880dbeda1dd18aca4fd0a95b2573b36"; - sha256 = "1kdrz6fki55lm15rwwamn74fnqpy0zlafsida2zymk76n3656c63"; + inherit (stdenv) buildPlatform hostPlatform targetPlatform; + + version = "2.38"; + + srcs = { + normal = fetchurl { + url = "mirror://gnu/binutils/binutils-${version}.tar.bz2"; + sha256 = "sha256-Bw7HHPB3pqWOC5WfBaCaNQFTeMLYpR6Q866r/jBZDvg="; + }; + vc4-none = fetchFromGitHub { + owner = "itszor"; + repo = "binutils-vc4"; + rev = "708acc851880dbeda1dd18aca4fd0a95b2573b36"; + sha256 = "1kdrz6fki55lm15rwwamn74fnqpy0zlafsida2zymk76n3656c63"; + }; }; - # HACK to ensure that we preserve source from bootstrap binutils to not rebuild LLVM - normal-src = stdenv.__bootPackages.binutils-unwrapped.src or (fetchurl { - url = "mirror://gnu/binutils/${basename}-${version}.tar.bz2"; - sha256 = "sha256-z6dkTb7PRZHhNutAfBwdoWV4vSsD8MLorNzroZS7nWE="; - }); + + #INFO: The targetPrefix prepended to binary names to allow multiple binuntils + # on the PATH to both be usable. + targetPrefix = lib.optionalString (targetPlatform != hostPlatform) "${targetPlatform.config}-"; in stdenv.mkDerivation { - pname = targetPrefix + basename; + pname = targetPrefix + "binutils"; inherit version; - src = if stdenv.targetPlatform.isVc4 then vc4-binutils-src else normal-src; + # HACK: Ensure that we preserve source from bootstrap binutils to not rebuild LLVM + src = stdenv.__bootPackages.binutils-unwrapped.src + or srcs.${targetPlatform.system} + or srcs.normal; + # WARN: this package is used for bootstrapping fetchurl, and thus cannot use + # fetchpatch! All mutable patches (generated by GitHub or cgit) that are + # needed here should be included directly in Nixpkgs as files. patches = [ # Make binutils output deterministic by default. ./deterministic.patch - # Help bfd choose between elf32-littlearm, elf32-littlearm-symbian, and - # elf32-littlearm-vxworks in favor of the first. - # https://github.com/NixOS/nixpkgs/pull/30484#issuecomment-345472766 - ./disambiguate-arm-targets.patch + + # Breaks nm BSD flag detection + ./0001-Revert-libtool.m4-fix-nm-BSD-flag-detection.patch + + # Required for newer macos versions + ./0001-libtool.m4-update-macos-version-detection-block.patch # For some reason bfd ld doesn't search DT_RPATH when cross-compiling. It's # not clear why this behavior was decided upon but it has the unfortunate @@ -69,40 +82,24 @@ stdenv.mkDerivation { # override this behavior, forcing ld to search DT_RPATH even when # cross-compiling. ./always-search-rpath.patch - - # Fix quadratic slowdown in `strip` performance. - # See #129467 and https://sourceware.org/bugzilla/show_bug.cgi?id=28058 - # Remove when we're on binutils > 2.36.1. - # The patch is downloaded from - # https://sourceware.org/git/?p=binutils-gdb.git;a=blobdiff_plain;f=bfd/elf.c;h=af62aadc3d446cd5b1f0201b207c90c22e7809b1;hp=36733e080dd9d9be28b576b246aaf5bd8c8569c7;hb=84fd26d8209e99fc3a432dd0b09b6c053de1ce65;hpb=abe2a28aaa7a2bfd0f3061c72a98eb898976b721 - # which is the 2.36 backport (using `TRUE` instead of `true` of binutils master commit: - # https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;h=956ea65cd707707c0f725930214cbc781367a831 - ./bfd-elf-Dont-read-non-existing-secondary-relocs.patch - - # Fix building plv8’s v8. - # https://github.com/NixOS/nixpkgs/issues/134190 - # Obtained from: https://sourceware.org/git/?p=binutils-gdb.git;a=commit;h=586e30940e640f67bd55bd72e1d1355a4faf8079 - ./gold-Update-GNU_PROPERTY_X86_XXX-macros.patch - - ./CVE-2020-35448.patch - ./CVE-2021-3487.patch - ./CVE-2021-45078.patch - ] ++ lib.optional stdenv.targetPlatform.isiOS ./support-ios.patch - ++ # This patch was suggested by Nick Clifton to fix - # https://sourceware.org/bugzilla/show_bug.cgi?id=16177 - # It can be removed when that 7-year-old bug is closed. - # This binutils bug causes GHC to emit broken binaries on armv7, and - # indeed GHC will refuse to compile with a binutils suffering from it. See - # this comment for more information: - # https://gitlab.haskell.org/ghc/ghc/issues/4210#note_78333 - lib.optional (stdenv.targetPlatform.isAarch32 && stdenv.hostPlatform.system != stdenv.targetPlatform.system) ./R_ARM_COPY.patch - ++ lib.optional stdenv.targetPlatform.isWindows ./windres-locate-gcc.patch - ++ lib.optional stdenv.targetPlatform.isMips64n64 - # this patch is from debian: - # https://sources.debian.org/data/main/b/binutils/2.38-3/debian/patches/mips64-default-n64.diff - (if stdenv.targetPlatform.isMusl - then substitute { src = ./mips64-default-n64.patch; replacements = [ "--replace" "gnuabi64" "muslabi64" ]; } - else ./mips64-default-n64.patch); + ] + ++ lib.optional targetPlatform.isiOS ./support-ios.patch + # This patch was suggested by Nick Clifton to fix + # https://sourceware.org/bugzilla/show_bug.cgi?id=16177 + # It can be removed when that 7-year-old bug is closed. + # This binutils bug causes GHC to emit broken binaries on armv7, and indeed + # GHC will refuse to compile with a binutils suffering from it. See this + # comment for more information: + # https://gitlab.haskell.org/ghc/ghc/issues/4210#note_78333 + ++ lib.optional (targetPlatform.isAarch32 && hostPlatform.system != targetPlatform.system) ./R_ARM_COPY.patch + ++ lib.optional stdenv.targetPlatform.isWindows ./windres-locate-gcc.patch + ++ lib.optional stdenv.targetPlatform.isMips64n64 + # this patch is from debian: + # https://sources.debian.org/data/main/b/binutils/2.38-3/debian/patches/mips64-default-n64.diff + (if stdenv.targetPlatform.isMusl + then substitute { src = ./mips64-default-n64.patch; replacements = [ "--replace" "gnuabi64" "muslabi64" ]; } + else ./mips64-default-n64.patch) + ; outputs = [ "out" "info" "man" ]; @@ -111,14 +108,26 @@ stdenv.mkDerivation { bison perl texinfo - ] ++ (lib.optionals stdenv.targetPlatform.isiOS [ - autoreconfHook - ]) ++ lib.optionals stdenv.targetPlatform.isVc4 [ flex ]; + ] + ++ lib.optionals targetPlatform.isiOS [ autoreconfHook ] + ++ lib.optionals buildPlatform.isDarwin [ autoconf269 automake gettext libtool ] + ++ lib.optionals targetPlatform.isVc4 [ flex ] + ; + buildInputs = [ zlib gettext ]; inherit noSysDirs; - preConfigure = '' + preConfigure = (lib.optionalString buildPlatform.isDarwin '' + for i in */configure.ac; do + pushd "$(dirname "$i")" + echo "Running autoreconf in $PWD" + # autoreconf doesn't work, don't know why + # autoreconf ''${autoreconfFlags:---install --force --verbose} + autoconf + popd + done + '') + '' # Clear the default library search path. if test "$noSysDirs" = "1"; then echo 'NATIVE_LIB_DIRS=' >> ld/configure.tgt @@ -133,7 +142,8 @@ stdenv.mkDerivation { # As binutils takes part in the stdenv building, we don't want references # to the bootstrap-tools libgcc (as uses to happen on arm/mips) - NIX_CFLAGS_COMPILE = if stdenv.hostPlatform.isDarwin + NIX_CFLAGS_COMPILE = + if hostPlatform.isDarwin then "-Wno-string-plus-int -Wno-deprecated-declarations" else "-static-libgcc"; @@ -141,11 +151,7 @@ stdenv.mkDerivation { configurePlatforms = [ "build" "host" "target" ]; - configureFlags = - (if enableShared then [ "--enable-shared" "--disable-static" ] - else [ "--disable-shared" "--enable-static" ]) - ++ lib.optional withAllTargets "--enable-targets=all" - ++ [ + configureFlags = [ "--enable-64-bit-bfd" "--with-system-zlib" @@ -158,35 +164,40 @@ stdenv.mkDerivation { # RUNPATH can be overriden using LD_LIBRARY_PATH at runtime. "--enable-new-dtags" - # force target prefix. Some versions of binutils will make it empty - # if `--host` and `--target` are too close, even if Nixpkgs thinks - # the platforms are different (e.g. because not all the info makes - # the `config`). Other versions of binutils will always prefix if - # `--target` is passed, even if `--host` and `--target` are the same. - # The easiest thing for us to do is not leave it to chance, and force - # the program prefix to be what we want it to be. + # force target prefix. Some versions of binutils will make it empty if + # `--host` and `--target` are too close, even if Nixpkgs thinks the + # platforms are different (e.g. because not all the info makes the + # `config`). Other versions of binutils will always prefix if `--target` is + # passed, even if `--host` and `--target` are the same. The easiest thing + # for us to do is not leave it to chance, and force the program prefix to be + # what we want it to be. "--program-prefix=${targetPrefix}" - ] ++ lib.optionals gold [ - "--enable-gold" - "--enable-plugins" - ]; - - doCheck = false; # fails - - postFixup = lib.optionalString reuseLibs '' + ] + ++ lib.optionals withAllTargets [ "--enable-targets=all" ] + ++ lib.optionals enableGold [ "--enable-gold" "--enable-plugins" ] + ++ (if enableShared + then [ "--enable-shared" "--disable-static" ] + else [ "--disable-shared" "--enable-static" ]) + ; + + # Fails + doCheck = false; + + postFixup = lib.optionalString (enableShared && withAllTargets) '' rm "$out"/lib/lib{bfd,opcodes}-${version}.so ln -s '${lib.getLib libbfd}/lib/libbfd-${version}.so' "$out/lib/" ln -s '${lib.getLib libopcodes}/lib/libopcodes-${version}.so' "$out/lib/" ''; - # else fails with "./sanity.sh: line 36: $out/bin/size: not found" - doInstallCheck = stdenv.buildPlatform == stdenv.hostPlatform && stdenv.hostPlatform == stdenv.targetPlatform; + # INFO: Otherwise it fails with: + # `./sanity.sh: line 36: $out/bin/size: not found` + doInstallCheck = (buildPlatform == hostPlatform) && (hostPlatform == targetPlatform); enableParallelBuilding = true; passthru = { inherit targetPrefix; - hasGold = gold; + hasGold = enableGold; isGNU = true; }; @@ -200,11 +211,11 @@ stdenv.mkDerivation { ''; homepage = "https://www.gnu.org/software/binutils/"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ ericson2314 ]; + maintainers = with maintainers; [ ericson2314 lovesegfault ]; platforms = platforms.unix; - /* Give binutils a lower priority than gcc-wrapper to prevent a - collision due to the ld/as wrappers/symlinks in the latter. */ + # INFO: Give binutils a lower priority than gcc-wrapper to prevent a + # collision due to the ld/as wrappers/symlinks in the latter. priority = 10; }; } diff --git a/pkgs/development/tools/misc/binutils/disambiguate-arm-targets.patch b/pkgs/development/tools/misc/binutils/disambiguate-arm-targets.patch deleted file mode 100644 index abbfa73da05..00000000000 --- a/pkgs/development/tools/misc/binutils/disambiguate-arm-targets.patch +++ /dev/null @@ -1,23 +0,0 @@ -diff --git a/bfd/elf32-arm.c b/bfd/elf32-arm.c -index 9f956d3..f5b61f1 100644 ---- a/bfd/elf32-arm.c -+++ b/bfd/elf32-arm.c -@@ -19585,7 +19585,10 @@ elf32_arm_vxworks_final_write_processing (bfd *abfd, bfd_boolean linker) - #undef ELF_MAXPAGESIZE - #define ELF_MAXPAGESIZE 0x1000 - -+/* Prioritize elf32-*arm (priority 1) over elf32-*arm-vxworks (priority 2) */ -+#define elf_match_priority 2 - #include "elf32-target.h" -+#undef elf_match_priority - - - /* Merge backend specific data from an object file to the output -@@ -19974,4 +19977,7 @@ elf32_arm_symbian_plt_sym_val (bfd_vma i, const asection *plt, - #undef ELF_MAXPAGESIZE - #define ELF_MAXPAGESIZE 0x8000 - -+/* Prioritize elf32-*arm (priority 1) over elf32-*arm-symbian (priority 2) */ -+#define elf_match_priority 2 - #include "elf32-target.h" -+#undef elf_match_priority diff --git a/pkgs/development/tools/misc/binutils/gold-Update-GNU_PROPERTY_X86_XXX-macros.patch b/pkgs/development/tools/misc/binutils/gold-Update-GNU_PROPERTY_X86_XXX-macros.patch deleted file mode 100644 index c4eef87a0c8..00000000000 --- a/pkgs/development/tools/misc/binutils/gold-Update-GNU_PROPERTY_X86_XXX-macros.patch +++ /dev/null @@ -1,292 +0,0 @@ -From 586e30940e640f67bd55bd72e1d1355a4faf8079 Mon Sep 17 00:00:00 2001 -From: "H.J. Lu" <hjl.tools@gmail.com> -Date: Tue, 13 Oct 2020 05:20:49 -0700 -Subject: [PATCH] gold: Update GNU_PROPERTY_X86_XXX macros - -This patch updates GNU_PROPERTY_X86_XXX macros for gold: - -1. GNU_PROPERTY_X86_UINT32_AND_XXX: A 4-byte unsigned integer property. -A bit is set if it is set in all relocatable inputs: - - #define GNU_PROPERTY_X86_UINT32_AND_LO 0xc0000002 - #define GNU_PROPERTY_X86_UINT32_AND_HI 0xc0007fff - -2. GNU_PROPERTY_X86_UINT32_OR_XXX: A 4-byte unsigned integer property. -A bit is set if it is set in any relocatable inputs: - - #define GNU_PROPERTY_X86_UINT32_OR_LO 0xc0008000 - #define GNU_PROPERTY_X86_UINT32_OR_HI 0xc000ffff - -3. GNU_PROPERTY_X86_UINT32_OR_AND_XXX: A 4-byte unsigned integer property. -A bit is set if it is set in any relocatable inputs and the property is -present in all relocatable inputs: - - #define GNU_PROPERTY_X86_UINT32_OR_AND_LO 0xc0010000 - #define GNU_PROPERTY_X86_UINT32_OR_AND_HI 0xc0017fff - -4. GNU_PROPERTY_X86_FEATURE_2_NEEDED, GNU_PROPERTY_X86_FEATURE_2_USED -and GNU_PROPERTY_X86_FEATURE_2_XXX bits. - -GNU_PROPERTY_X86_FEATURE_1_AND is unchanged. GNU_PROPERTY_X86_ISA_1_USED -and GNU_PROPERTY_X86_ISA_1_NEEDED are updated to better support targeted -processors since GNU_PROPERTY_X86_ISA_1_?86 aren't isn't very useful. -A new set of GNU_PROPERTY_X86_ISA_1_XXX bits are defined. The previous -GNU_PROPERTY_X86_ISA_1_XXX macros are deprecated and renamed to -GNU_PROPERTY_X86_COMPAT_ISA_1_XXX and GNU_PROPERTY_X86_COMPAT_2_ISA_1_XXX. - -elfcpp/ - - * elfcpp.h (GNU_PROPERTY_X86_ISA_1_USED): Renamed to ... - (GNU_PROPERTY_X86_COMPAT_ISA_1_USED): This. - (GNU_PROPERTY_X86_ISA_1_NEEDED): Renamed to ... - (GNU_PROPERTY_X86_COMPAT_ISA_1_NEEDED): This. - (GNU_PROPERTY_X86_UINT32_AND_LO): New. - (GNU_PROPERTY_X86_UINT32_AND_HI): Likewise. - (GNU_PROPERTY_X86_UINT32_OR_LO): Likewise. - (GNU_PROPERTY_X86_UINT32_OR_HI): Likewise. - (GNU_PROPERTY_X86_UINT32_OR_AND_LO): Likewise. - (GNU_PROPERTY_X86_UINT32_OR_AND_HI): Likewise. - (GNU_PROPERTY_X86_COMPAT_2_ISA_1_NEEDED): New. - (GNU_PROPERTY_X86_COMPAT_2_ISA_1_NEEDED): Likewise. - (GNU_PROPERTY_X86_FEATURE_1_AND): Updated to - (GNU_PROPERTY_X86_UINT32_AND_LO + 0). - (GNU_PROPERTY_X86_ISA_1_NEEDED): New. Defined to - GNU_PROPERTY_X86_UINT32_OR_LO + 2. - (GNU_PROPERTY_X86_FEATURE_2_NEEDED): New. Defined to - (GNU_PROPERTY_X86_UINT32_OR_LO + 1). - (GNU_PROPERTY_X86_ISA_1_USED): New. Defined to - GNU_PROPERTY_X86_UINT32_OR_AND_LO + 2. - (GNU_PROPERTY_X86_FEATURE_2_USED): New. Defined to - (GNU_PROPERTY_X86_UINT32_OR_AND_LO + 1). - -gold/ - - * x86_64.cc (Target_x86_64::Target_x86_64): Initialize - feature_2_used_, feature_2_needed_ and object_feature_2_used_. - (Target_x86_64::feature_2_used_): New data member. - (Target_x86_64::feature_2_needed_): Likewise. - (Target_x86_64::object_isa_1_used_): Likewise. - (Target_x86_64::record_gnu_property): Support - GNU_PROPERTY_X86_COMPAT_ISA_1_USED, - GNU_PROPERTY_X86_COMPAT_ISA_1_NEEDED, - GNU_PROPERTY_X86_COMPAT_2_ISA_1_USED, - GNU_PROPERTY_X86_COMPAT_2_ISA_1_NEEDED, - GNU_PROPERTY_X86_FEATURE_2_USED and - GNU_PROPERTY_X86_FEATURE_2_NEEDED. - (Target_x86_64::merge_gnu_properties): Merge FEATURE_2_USED bits. - Initialize object_feature_2_used_. - (Target_x86_64::do_finalize_gnu_properties): Support - GNU_PROPERTY_X86_FEATURE_2_USED and - GNU_PROPERTY_X86_FEATURE_2_NEEDED. - * testsuite/gnu_property_a.S (GNU_PROPERTY_X86_ISA_1_USED): Set - to 0xc0010002. - (GNU_PROPERTY_X86_ISA_1_NEEDED): Set to 0xc0008002. - * testsuite/gnu_property_b.S (GNU_PROPERTY_X86_ISA_1_USED): Set - to 0xc0010002. - (GNU_PROPERTY_X86_ISA_1_NEEDED): Set to 0xc0008002. - * testsuite/gnu_property_c.S (GNU_PROPERTY_X86_ISA_1_USED): Set - to 0xc0010002. - (GNU_PROPERTY_X86_ISA_1_NEEDED): Set to 0xc0008002. - * testsuite/gnu_property_test.sh: Updated. ---- - elfcpp/ChangeLog | [omitted] - elfcpp/elfcpp.h | 18 ++++++++++++--- - gold/ChangeLog | [omitted] - gold/testsuite/gnu_property_a.S | 4 ++-- - gold/testsuite/gnu_property_b.S | 4 ++-- - gold/testsuite/gnu_property_c.S | 4 ++-- - gold/testsuite/gnu_property_test.sh | 4 ++-- - gold/x86_64.cc | 34 +++++++++++++++++++++++++++-- - 8 files changed, 110 insertions(+), 13 deletions(-) - -diff --git a/elfcpp/elfcpp.h b/elfcpp/elfcpp.h -index 65d803c00e2..4b6ff94a654 100644 ---- a/elfcpp/elfcpp.h -+++ b/elfcpp/elfcpp.h -@@ -1013,9 +1013,21 @@ enum - GNU_PROPERTY_STACK_SIZE = 1, - GNU_PROPERTY_NO_COPY_ON_PROTECTED = 2, - GNU_PROPERTY_LOPROC = 0xc0000000, -- GNU_PROPERTY_X86_ISA_1_USED = 0xc0000000, -- GNU_PROPERTY_X86_ISA_1_NEEDED = 0xc0000001, -- GNU_PROPERTY_X86_FEATURE_1_AND = 0xc0000002, -+ GNU_PROPERTY_X86_COMPAT_ISA_1_USED = 0xc0000000, -+ GNU_PROPERTY_X86_COMPAT_ISA_1_NEEDED = 0xc0000001, -+ GNU_PROPERTY_X86_UINT32_AND_LO = 0xc0000002, -+ GNU_PROPERTY_X86_UINT32_AND_HI = 0xc0007fff, -+ GNU_PROPERTY_X86_UINT32_OR_LO = 0xc0008000, -+ GNU_PROPERTY_X86_UINT32_OR_HI = 0xc000ffff, -+ GNU_PROPERTY_X86_UINT32_OR_AND_LO = 0xc0010000, -+ GNU_PROPERTY_X86_UINT32_OR_AND_HI = 0xc0017fff, -+ GNU_PROPERTY_X86_COMPAT_2_ISA_1_NEEDED = GNU_PROPERTY_X86_UINT32_OR_LO + 0, -+ GNU_PROPERTY_X86_COMPAT_2_ISA_1_USED = GNU_PROPERTY_X86_UINT32_OR_AND_LO + 0, -+ GNU_PROPERTY_X86_FEATURE_1_AND = GNU_PROPERTY_X86_UINT32_AND_LO + 0, -+ GNU_PROPERTY_X86_ISA_1_NEEDED = GNU_PROPERTY_X86_UINT32_OR_LO + 2, -+ GNU_PROPERTY_X86_FEATURE_2_NEEDED = GNU_PROPERTY_X86_UINT32_OR_LO + 1, -+ GNU_PROPERTY_X86_ISA_1_USED = GNU_PROPERTY_X86_UINT32_OR_AND_LO + 2, -+ GNU_PROPERTY_X86_FEATURE_2_USED = GNU_PROPERTY_X86_UINT32_OR_AND_LO + 1, - GNU_PROPERTY_HIPROC = 0xdfffffff, - GNU_PROPERTY_LOUSER = 0xe0000000, - GNU_PROPERTY_HIUSER = 0xffffffff -diff --git a/gold/testsuite/gnu_property_a.S b/gold/testsuite/gnu_property_a.S -index 463bc8e52fe..5fbbbc9c4bb 100644 ---- a/gold/testsuite/gnu_property_a.S -+++ b/gold/testsuite/gnu_property_a.S -@@ -1,8 +1,8 @@ - #define NT_GNU_PROPERTY_TYPE_0 5 - - #define GNU_PROPERTY_STACK_SIZE 1 --#define GNU_PROPERTY_X86_ISA_1_USED 0xc0000000 --#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0000001 -+#define GNU_PROPERTY_X86_ISA_1_USED 0xc0010002 -+#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0008002 - #define GNU_PROPERTY_X86_FEATURE_1_AND 0xc0000002 - - #if __SIZEOF_PTRDIFF_T__ == 8 -diff --git a/gold/testsuite/gnu_property_b.S b/gold/testsuite/gnu_property_b.S -index 0c0c038ead1..7028f73d7ab 100644 ---- a/gold/testsuite/gnu_property_b.S -+++ b/gold/testsuite/gnu_property_b.S -@@ -2,8 +2,8 @@ - - #define GNU_PROPERTY_STACK_SIZE 1 - #define GNU_PROPERTY_NO_COPY_ON_PROTECTED 2 --#define GNU_PROPERTY_X86_ISA_1_USED 0xc0000000 --#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0000001 -+#define GNU_PROPERTY_X86_ISA_1_USED 0xc0010002 -+#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0008002 - #define GNU_PROPERTY_X86_FEATURE_1_AND 0xc0000002 - - #if __SIZEOF_PTRDIFF_T__ == 8 -diff --git a/gold/testsuite/gnu_property_c.S b/gold/testsuite/gnu_property_c.S -index ace159a9a9d..c8cbd8bce28 100644 ---- a/gold/testsuite/gnu_property_c.S -+++ b/gold/testsuite/gnu_property_c.S -@@ -2,8 +2,8 @@ - - #define GNU_PROPERTY_STACK_SIZE 1 - #define GNU_PROPERTY_NO_COPY_ON_PROTECTED 2 --#define GNU_PROPERTY_X86_ISA_1_USED 0xc0000000 --#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0000001 -+#define GNU_PROPERTY_X86_ISA_1_USED 0xc0010002 -+#define GNU_PROPERTY_X86_ISA_1_NEEDED 0xc0008002 - #define GNU_PROPERTY_X86_FEATURE_1_AND 0xc0000002 - - #if __SIZEOF_PTRDIFF_T__ == 8 -diff --git a/gold/testsuite/gnu_property_test.sh b/gold/testsuite/gnu_property_test.sh -index 1806d3474cc..a4096005b78 100755 ---- a/gold/testsuite/gnu_property_test.sh -+++ b/gold/testsuite/gnu_property_test.sh -@@ -77,8 +77,8 @@ check_count gnu_property_test.stdout "^ NOTE" 2 - - check gnu_property_test.stdout "stack size: 0x111100" - check gnu_property_test.stdout "no copy on protected" --check gnu_property_test.stdout "x86 ISA used: i486, SSE2, SSE4_2, AVX512CD" --check gnu_property_test.stdout "x86 ISA needed: i486, SSE2, SSE4_2, AVX512CD" -+check gnu_property_test.stdout "x86 ISA used: x86-64-v2, <unknown: 10>, <unknown: 100>, <unknown: 1000>" -+check gnu_property_test.stdout "x86 ISA needed: x86-64-v2, <unknown: 10>, <unknown: 100>, <unknown: 1000>" - check gnu_property_test.stdout "x86 feature: IBT" - - exit 0 -diff --git a/gold/x86_64.cc b/gold/x86_64.cc -index 9cb2cf0a322..378bac16f78 100644 ---- a/gold/x86_64.cc -+++ b/gold/x86_64.cc -@@ -706,8 +706,9 @@ class Target_x86_64 : public Sized_target<size, false> - rela_irelative_(NULL), copy_relocs_(elfcpp::R_X86_64_COPY), - got_mod_index_offset_(-1U), tlsdesc_reloc_info_(), - tls_base_symbol_defined_(false), isa_1_used_(0), isa_1_needed_(0), -- feature_1_(0), object_isa_1_used_(0), object_feature_1_(0), -- seen_first_object_(false) -+ feature_1_(0), feature_2_used_(0), feature_2_needed_(0), -+ object_isa_1_used_(0), object_feature_1_(0), -+ object_feature_2_used_(0), seen_first_object_(false) - { } - - // Hook for a new output section. -@@ -1382,6 +1383,8 @@ class Target_x86_64 : public Sized_target<size, false> - uint32_t isa_1_used_; - uint32_t isa_1_needed_; - uint32_t feature_1_; -+ uint32_t feature_2_used_; -+ uint32_t feature_2_needed_; - // Target-specific properties from the current object. - // These bits get ORed into ISA_1_USED_ after all properties for the object - // have been processed. But if either is all zeroes (as when the property -@@ -1391,6 +1394,7 @@ class Target_x86_64 : public Sized_target<size, false> - // These bits get ANDed into FEATURE_1_ after all properties for the object - // have been processed. - uint32_t object_feature_1_; -+ uint32_t object_feature_2_used_; - // Whether we have seen our first object, for use in initializing FEATURE_1_. - bool seen_first_object_; - }; -@@ -1594,9 +1598,15 @@ Target_x86_64<size>::record_gnu_property( - - switch (pr_type) - { -+ case elfcpp::GNU_PROPERTY_X86_COMPAT_ISA_1_USED: -+ case elfcpp::GNU_PROPERTY_X86_COMPAT_ISA_1_NEEDED: -+ case elfcpp::GNU_PROPERTY_X86_COMPAT_2_ISA_1_USED: -+ case elfcpp::GNU_PROPERTY_X86_COMPAT_2_ISA_1_NEEDED: - case elfcpp::GNU_PROPERTY_X86_ISA_1_USED: - case elfcpp::GNU_PROPERTY_X86_ISA_1_NEEDED: - case elfcpp::GNU_PROPERTY_X86_FEATURE_1_AND: -+ case elfcpp::GNU_PROPERTY_X86_FEATURE_2_USED: -+ case elfcpp::GNU_PROPERTY_X86_FEATURE_2_NEEDED: - if (pr_datasz != 4) - { - gold_warning(_("%s: corrupt .note.gnu.property section " -@@ -1625,6 +1635,12 @@ Target_x86_64<size>::record_gnu_property( - // If we see multiple feature props in one object, OR them together. - this->object_feature_1_ |= val; - break; -+ case elfcpp::GNU_PROPERTY_X86_FEATURE_2_USED: -+ this->object_feature_2_used_ |= val; -+ break; -+ case elfcpp::GNU_PROPERTY_X86_FEATURE_2_NEEDED: -+ this->feature_2_needed_ |= val; -+ break; - } - } - -@@ -1642,15 +1658,23 @@ Target_x86_64<size>::merge_gnu_properties(const Object*) - else if (this->isa_1_used_ != 0) - this->isa_1_used_ |= this->object_isa_1_used_; - this->feature_1_ &= this->object_feature_1_; -+ // If any object is missing the FEATURE_2_USED property, we must -+ // omit it from the output file. -+ if (this->object_feature_2_used_ == 0) -+ this->feature_2_used_ = 0; -+ else if (this->feature_2_used_ != 0) -+ this->feature_2_used_ |= this->object_feature_2_used_; - } - else - { - this->isa_1_used_ = this->object_isa_1_used_; - this->feature_1_ = this->object_feature_1_; -+ this->feature_2_used_ = this->object_feature_2_used_; - this->seen_first_object_ = true; - } - this->object_isa_1_used_ = 0; - this->object_feature_1_ = 0; -+ this->object_feature_2_used_ = 0; - } - - static inline void -@@ -1676,6 +1700,12 @@ Target_x86_64<size>::do_finalize_gnu_properties(Layout* layout) const - if (this->feature_1_ != 0) - add_property(layout, elfcpp::GNU_PROPERTY_X86_FEATURE_1_AND, - this->feature_1_); -+ if (this->feature_2_used_ != 0) -+ add_property(layout, elfcpp::GNU_PROPERTY_X86_FEATURE_2_USED, -+ this->feature_2_used_); -+ if (this->feature_2_needed_ != 0) -+ add_property(layout, elfcpp::GNU_PROPERTY_X86_FEATURE_2_NEEDED, -+ this->feature_2_needed_); - } - - // Write the first three reserved words of the .got.plt section. --- -2.27.0 - diff --git a/pkgs/development/tools/misc/clojure-lsp/default.nix b/pkgs/development/tools/misc/clojure-lsp/default.nix index 307bcd273a4..4dc63d54f14 100644 --- a/pkgs/development/tools/misc/clojure-lsp/default.nix +++ b/pkgs/development/tools/misc/clojure-lsp/default.nix @@ -2,18 +2,18 @@ buildGraalvmNativeImage rec { pname = "clojure-lsp"; - version = "2022.03.31-20.00.20"; + version = "2022.04.18-00.59.32"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-UQA/BXf6hTTxZ504e1faPdS8mKYS8WrY5L/zgaGCxpU="; + sha256 = "sha256-14EsJIKYl8TWbDqM9PyVrbs/4EssqXp0EK70RrFz+RE="; }; jar = fetchurl { url = "https://github.com/clojure-lsp/clojure-lsp/releases/download/${version}/clojure-lsp-standalone.jar"; - sha256 = "e66689326c39ae74f0e8d9f5a8229c7ebebe010849870a47faf88e81cbaa37e0"; + sha256 = "d78094b015bd9e671eea2eb89ca0bb3ec58d39802ad1bfdf875b50e1cdd4995e"; }; extraNativeImageBuildArgs = [ diff --git a/pkgs/development/tools/misc/libtool/libtool2-macos11.patch b/pkgs/development/tools/misc/libtool/libtool2-macos11.patch deleted file mode 100644 index 1552ae7a949..00000000000 --- a/pkgs/development/tools/misc/libtool/libtool2-macos11.patch +++ /dev/null @@ -1,32 +0,0 @@ -Signed-off-by: Jeremy Huddleston Sequoia <jeremyhu@apple.com> ---- - m4/libtool.m4 | 13 ++++--------- - 1 file changed, 4 insertions(+), 9 deletions(-) - -diff --git a/m4/libtool.m4 b/m4/libtool.m4 -index f2d1f398..b971e8e7 100644 ---- a/m4/libtool.m4 -+++ b/m4/libtool.m4 -@@ -1067,16 +1067,11 @@ _LT_EOF - _lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;; - darwin1.*) - _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; -- darwin*) # darwin 5.x on -- # if running on 10.5 or later, the deployment target defaults -- # to the OS version, if on x86, and 10.4, the deployment -- # target defaults to 10.4. Don't you love it? -- case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in -- 10.0,*86*-darwin8*|10.0,*-darwin[[91]]*) -- _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; -- 10.[[012]][[,.]]*) -+ darwin*) -+ case ${MACOSX_DEPLOYMENT_TARGET},$host in -+ 10.[[012]],*|,*powerpc*) - _lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;; -- 10.*) -+ *) - _lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;; - esac - ;; --- -2.24.3 (Apple Git-128) diff --git a/pkgs/development/tools/misc/libtool/libtool2.nix b/pkgs/development/tools/misc/libtool/libtool2.nix index 44e4c8665c8..3d15752fc0a 100644 --- a/pkgs/development/tools/misc/libtool/libtool2.nix +++ b/pkgs/development/tools/misc/libtool/libtool2.nix @@ -1,4 +1,6 @@ { lib, stdenv, fetchurl, fetchpatch, autoconf, automake, m4, perl, help2man +, runtimeShell +, file }: # Note: this package is used for bootstrapping fetchurl, and thus @@ -8,20 +10,18 @@ stdenv.mkDerivation rec { pname = "libtool"; - version = "2.4.6"; + version = "2.4.7"; src = fetchurl { url = "mirror://gnu/libtool/${pname}-${version}.tar.gz"; - sha256 = "1qq61k6lp1fp75xs398yzi6wvbx232l7xbyn3p13cnh27mflvgg3"; + sha256 = "sha256-BOlsJATqcMWQxUbrpCAqThJyLGQAFsErmy8c49SB6ag="; }; outputs = [ "out" "lib" ]; - patches = [ - # Suport macOS version 11.0 - # https://lists.gnu.org/archive/html/libtool-patches/2020-06/msg00001.html - ./libtool2-macos11.patch - ]; + # FILECMD was added in libtool 2.4.7; previous versions hardwired `/usr/bin/file` + # https://lists.gnu.org/archive/html/autotools-announce/2022-03/msg00000.html + FILECMD = "${file}/bin/file"; # Normally we'd use autoreconfHook, but that includes libtoolize. postPatch = '' @@ -34,10 +34,18 @@ stdenv.mkDerivation rec { automake autoconf popd + '' + + # libtool commit da2e352735722917bf0786284411262195a6a3f6 changed + # the shebang from `/bin/sh` (which is a special sandbox exception) + # to `/usr/bin/env sh`, meaning that we now need to patch shebangs + # in libtoolize and ltmain.sh since `dontPatchShebangs` is set: + '' + substituteInPlace libtoolize.in --replace '#! /usr/bin/env sh' '#!${runtimeShell}' + substituteInPlace build-aux/ltmain.in --replace '#! /usr/bin/env sh' '#!${runtimeShell}' ''; - nativeBuildInputs = [ perl help2man m4 ] ++ [ autoconf automake ]; - propagatedBuildInputs = [ m4 ]; + nativeBuildInputs = [ autoconf automake help2man m4 perl ]; + propagatedBuildInputs = [ m4 file ]; # Don't fixup "#! /bin/sh" in Libtool, otherwise it will use the # "fixed" path in generated files! diff --git a/pkgs/development/tools/mold/default.nix b/pkgs/development/tools/mold/default.nix index db1c13da2f9..491afd68bbb 100644 --- a/pkgs/development/tools/mold/default.nix +++ b/pkgs/development/tools/mold/default.nix @@ -41,6 +41,8 @@ stdenv.mkDerivation rec { homepage = "https://github.com/rui314/mold"; license = lib.licenses.agpl3Plus; maintainers = with maintainers; [ nitsky ]; - broken = stdenv.isAarch64; + platforms = platforms.unix; + # error: aligned deallocation function of type 'void (void *, std::align_val_t) noexcept' is only available on macOS 10.14 or newer + broken = stdenv.isAarch64 || stdenv.isDarwin; }; } diff --git a/pkgs/development/tools/ocaml/dune/3.nix b/pkgs/development/tools/ocaml/dune/3.nix index f6f45944a81..a43c88671f8 100644 --- a/pkgs/development/tools/ocaml/dune/3.nix +++ b/pkgs/development/tools/ocaml/dune/3.nix @@ -6,11 +6,11 @@ else stdenv.mkDerivation rec { pname = "dune"; - version = "3.0.3"; + version = "3.1.0"; src = fetchurl { url = "https://github.com/ocaml/dune/releases/download/${version}/fiber-${version}.tbz"; - sha256 = "sha256-1QRJmhZY8Nmcrvv/1zhvLjHUbOynMWcVf+RobEHlcy8="; + sha256 = "sha256-B31SCwhFxW4Q7FhW18ZuvnofG+pKMCfRgvRLJSlRnYE="; }; nativeBuildInputs = [ ocaml findlib ]; diff --git a/pkgs/development/tools/pigeon/default.nix b/pkgs/development/tools/pigeon/default.nix index ae543533059..b94a9f4bfc3 100644 --- a/pkgs/development/tools/pigeon/default.nix +++ b/pkgs/development/tools/pigeon/default.nix @@ -1,18 +1,24 @@ -{ lib, buildGoPackage, fetchFromGitHub }: -buildGoPackage { - pname = "pigeon"; - version = "20190810-f3db42a662"; +{ lib, buildGoModule, fetchFromGitHub }: - goPackagePath = "github.com/mna/pigeon"; - goDeps = ./deps.nix; +buildGoModule rec { + pname = "pigeon"; + version = "1.1.0"; src = fetchFromGitHub { owner = "mna"; repo = "pigeon"; - rev = "f3db42a662eded7550fc7cd11605d05311dfa30f"; - sha256 = "1n0zqidwbqqfslrirpbqw14ylgiry6ggcp9ll4h8rf1chqwk6dhv"; + rev = "v${version}"; + sha256 = "sha256-0Cp/OnFvVZj9UZgl3F5MCzemBaHI4smGWU46VQnhLOg="; }; + vendorSha256 = "sha256-07zoQL4mLPSERBkZ3sz35Av7zdZsjTyGR8zbA86EEjU="; + + proxyVendor = true; + + subPackages = [ "." ]; + + doCheck = false; + meta = { homepage = "https://github.com/mna/pigeon"; description = "A PEG parser generator for Go"; diff --git a/pkgs/development/tools/pigeon/deps.nix b/pkgs/development/tools/pigeon/deps.nix deleted file mode 100644 index d836dc43c7c..00000000000 --- a/pkgs/development/tools/pigeon/deps.nix +++ /dev/null @@ -1,66 +0,0 @@ -# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) -[ - { - goPackagePath = "golang.org/x/crypto"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "c2843e01d9a2"; - sha256 = "01xgxbj5r79nmisdvpq48zfy8pzaaj90bn6ngd4nf33j9ar1dp8r"; - }; - } - { - goPackagePath = "golang.org/x/net"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/net"; - rev = "3b0461eec859"; - sha256 = "0l00c8l0a8xnv6qdpwfzxxsr58jggacgzdrwiprrfx2xqm37b6d5"; - }; - } - { - goPackagePath = "golang.org/x/sync"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sync"; - rev = "112230192c58"; - sha256 = "05i2k43j2d0llq768hg5pf3hb2yhfzp9la1w5wp0rsnnzblr0lfn"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "d0b11bdaac8a"; - sha256 = "18yfsmw622l7gc5sqriv5qmck6903vvhivpzp8i3xfy3z33dybdl"; - }; - } - { - goPackagePath = "golang.org/x/text"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/text"; - rev = "v0.3.0"; - sha256 = "0r6x6zjzhr8ksqlpiwm5gdd7s209kwk5p4lw54xjvz10cs3qlq19"; - }; - } - { - goPackagePath = "golang.org/x/tools"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/tools"; - rev = "b29f5f60c37a"; - sha256 = "118rvb59hc1fykbmif4008rbxw1p0dblc8dxkq96yaapd6p0vbpn"; - }; - } - { - goPackagePath = "golang.org/x/xerrors"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/xerrors"; - rev = "a985d3407aa7"; - sha256 = "00wzr5w8aadipgc3rkk8f11i41znskfj9ix5nhhaxyg7isrslgcj"; - }; - } -] diff --git a/pkgs/development/tools/quicktemplate/default.nix b/pkgs/development/tools/quicktemplate/default.nix index 747a82740f4..2086464d7b3 100644 --- a/pkgs/development/tools/quicktemplate/default.nix +++ b/pkgs/development/tools/quicktemplate/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "quicktemplate"; - version = "1.6.3"; + version = "1.7.0"; src = fetchFromGitHub { owner = "valyala"; repo = "quicktemplate"; rev = "v${version}"; - sha256 = "mQhrQcKRDtcXha7FIwCIUwWfoPGIJ5YLbA4HdatIdn8="; + sha256 = "0xzsvhpllmzmyfg8sj1dpp02826j1plmyrdvqbwryzhf2ci33nqr"; }; vendorSha256 = null; @@ -17,7 +17,7 @@ buildGoModule rec { homepage = "https://github.com/valyala/quicktemplate"; description = "Fast, powerful, yet easy to use template engine for Go"; license = licenses.mit; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; mainProgram = "qtc"; }; } diff --git a/pkgs/development/tools/rust/cbindgen/default.nix b/pkgs/development/tools/rust/cbindgen/default.nix index 6e8f67bd0a5..a4f02023bb0 100644 --- a/pkgs/development/tools/rust/cbindgen/default.nix +++ b/pkgs/development/tools/rust/cbindgen/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "rust-cbindgen"; - version = "0.20.0"; + version = "0.21.0"; src = fetchFromGitHub { owner = "eqrion"; repo = "cbindgen"; rev = "v${version}"; - sha256 = "sha256-BLiAFYkqVJSpeNPW7UF2PpAttd6ADGeQ9yneiVfNi4g="; + sha256 = "sha256-WvCGAjFxjaql/y35QfHyHvwbEL4pKtlc3JO2NecqQCM="; }; - cargoSha256 = "sha256-P58qANcl0mYqJDP1QnSx560y8BLH+ePTZ+uHuix89R4="; + cargoSha256 = "sha256-Kl2/u+ttPn1k7f3+XRCord4u+c4QZ80/Okb40XeyeIk="; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/development/tools/rust/racer/default.nix b/pkgs/development/tools/rust/racer/default.nix index f6717b36b20..3fd4f768384 100644 --- a/pkgs/development/tools/rust/racer/default.nix +++ b/pkgs/development/tools/rust/racer/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "racer"; - version = "2.1.48"; + version = "2.2.1"; src = fetchCrate { inherit pname version; - sha256 = "sha256-lat5s9+AMFI3VXiWqjLESZrtq3IwOZhlt+5BhYoonfA="; + sha256 = "sha256-uAVtJwOyhe1lPz+MUUFCgHJPVGuIk/lNUkQWiNdOZ5Y="; }; - cargoSha256 = "sha256-jGsvCmrPGVzWdx7V3J4bBK+SF2o+icORmVKuwqYxdh4="; + cargoSha256 = "sha256-U2mI1y6t8CwxW/iPcPzxAafu61GNm/XLCKVGuyybV/4="; nativeBuildInputs = [ makeWrapper ]; buildInputs = lib.optional stdenv.isDarwin Security; @@ -32,6 +32,10 @@ rustPlatform.buildRustPackage rec { "--skip test_resolve_global_path_in_modules" ]; + # [2022-04-06] Its test suite contains two function calls with the + # wrong number of arguments, breaking its build. + doCheck = false; + doInstallCheck = true; installCheckPhase = '' $out/bin/racer --version @@ -42,7 +46,5 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/racer-rust/racer"; license = licenses.mit; maintainers = with maintainers; [ jagajaga ]; - # error[E0199]: implementing the trait `Step` is not unsafe - broken = true; }; } diff --git a/pkgs/development/tools/statik/default.nix b/pkgs/development/tools/statik/default.nix index 48ceea24b70..6befb42c24d 100644 --- a/pkgs/development/tools/statik/default.nix +++ b/pkgs/development/tools/statik/default.nix @@ -24,6 +24,6 @@ buildGoModule rec { homepage = "https://github.com/rakyll/statik"; description = "Embed files into a Go executable "; license = licenses.asl20; - maintainers = with maintainers; [ chiiruno ]; + maintainers = with maintainers; [ Madouura ]; }; } diff --git a/pkgs/development/web/cypress/default.nix b/pkgs/development/web/cypress/default.nix index 3d58b865126..0a726d18b1b 100644 --- a/pkgs/development/web/cypress/default.nix +++ b/pkgs/development/web/cypress/default.nix @@ -16,11 +16,11 @@ stdenv.mkDerivation rec { pname = "cypress"; - version = "9.5.3"; + version = "9.5.4"; src = fetchzip { url = "https://cdn.cypress.io/desktop/${version}/linux-x64/cypress.zip"; - sha256 = "qK1TvAGiTVmEQ4MpqICDSP9swnpAcE6iGkGJOrPQ1bI="; + sha256 = "F4BSIA3ImXwmmki8/FK0t08Gf5S8KMpXNNBIPPJQNsM="; }; # don't remove runtime deps diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index eaa2afd9cdd..720467ac4cd 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,29 +2,42 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.316"; + version = "0.0.320"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "sha256-ZIVb4k/KCiHXoEv45lQ2bYAHOXIADCDZOQPeIoMJ8RM="; + sha256 = "sha256-hljQzMdA+dfZDQMqehkdZ1giv56IRygby4UF57Cogq8="; }; - preBuild = '' - go generate ./... - ''; + vendorSha256 = "sha256-8+EYVaWOppzv4bV/rBWyTTdAFSx7QI0a3+oplBglxyQ="; subPackages = [ "." ]; - vendorSha256 = "sha256-D3eYFEib+PoAOfrkDKXEzq9Ivh6ukZcT+eA10z5LHGE="; + ldflags = [ + "-s" "-w" + "-X github.com/superfly/flyctl/flyctl.Commit=${src.rev}" + "-X github.com/superfly/flyctl/flyctl.BuildDate=1970-01-01T00:00:00+0000" + "-X github.com/superfly/flyctl/flyctl.Environment=production" + "-X github.com/superfly/flyctl/flyctl.Version=${version}" + ]; - doCheck = false; + preBuild = '' + go generate ./... + ''; + + preCheck = '' + HOME=$(mktemp -d) + ''; - ldflags = [ "-s" "-w" "-X github.com/superfly/flyctl/flyctl.Version=${version}" "-X github.com/superfly/flyctl/flyctl.Commit=${src.rev}" "-X github.com/superfly/flyctl/flyctl.BuildDate=1970-01-01T00:00:00+0000" "-X github.com/superfly/flyctl/flyctl.Environment=production" ]; + postCheck = '' + go test ./... -ldflags="-X 'github.com/superfly/flyctl/internal/buildinfo.buildDate=1970-01-01T00:00:00+0000'" + ''; meta = with lib; { description = "Command line tools for fly.io services"; + downloadPage = "https://github.com/superfly/flyctl"; homepage = "https://fly.io/"; license = licenses.asl20; maintainers = with maintainers; [ aaronjanse jsierles ]; diff --git a/pkgs/development/web/nodejs/nodejs.nix b/pkgs/development/web/nodejs/nodejs.nix index 1e05850884c..317de55ada5 100644 --- a/pkgs/development/web/nodejs/nodejs.nix +++ b/pkgs/development/web/nodejs/nodejs.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, openssl, python, zlib, libuv, util-linux, http-parser -, pkg-config, which +, pkg-config, which, buildPackages # for `.pkgs` attribute , callPackage # Updater dependencies @@ -50,6 +50,10 @@ let inherit sha256; }; + CC_host = "cc"; + CXX_host = "c++"; + depsBuildBuild = [ buildPackages.stdenv.cc openssl libuv zlib ]; + buildInputs = optionals stdenv.isDarwin [ CoreServices ApplicationServices ] ++ [ zlib libuv openssl http-parser icu ]; @@ -69,12 +73,23 @@ let "--cross-compiling" "--without-intl" "--without-snapshot" + "--dest-cpu=${let platform = stdenv.hostPlatform; in + if platform.isAarch32 then "arm" + else if platform.isAarch64 then "arm64" + else if platform.isMips32 && platform.isLittleEndian then "mipsel" + else if platform.isMips32 && !platform.isLittleEndian then "mips" + else if platform.isMips64 && platform.isLittleEndian then "mips64el" + else if platform.isPower && platform.is32bit then "ppc" + else if platform.isPower && platform.is64bit then "ppc64" + else if platform.isx86_64 then "x86_64" + else if platform.isx86_32 then "x86" + else if platform.isS390 && platform.is64bit then "s390x" + else if platform.isRiscV && platform.is64bit then "riscv64" + else throw "unsupported cpu ${stdenv.hostPlatform.uname.processor}"}" ]) ++ (optionals (isCross && isAarch32 && hasAttr "fpu" gcc) [ "--with-arm-fpu=${gcc.fpu}" ]) ++ (optionals (isCross && isAarch32 && hasAttr "float-abi" gcc) [ "--with-arm-float-abi=${gcc.float-abi}" - ]) ++ (optionals (isCross && isAarch32) [ - "--dest-cpu=arm" ]) ++ extraConfigFlags; configurePlatforms = []; |