diff options
Diffstat (limited to 'pkgs/development')
399 files changed, 14253 insertions, 7209 deletions
diff --git a/pkgs/development/compilers/asn1c/default.nix b/pkgs/development/compilers/asn1c/default.nix index d3c4bf19a65..eda895d726a 100644 --- a/pkgs/development/compilers/asn1c/default.nix +++ b/pkgs/development/compilers/asn1c/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "asn1c-${version}"; - version = "0.9.27"; + version = "0.9.28"; src = fetchurl { url = "http://lionet.info/soft/asn1c-${version}.tar.gz"; - sha256 = "17nvn2kzvlryasr9dzqg6gs27b9lvqpval0k31pb64bjqbhn8pq2"; + sha256 = "1fc64g45ykmv73kdndr4zdm4wxhimhrir4rxnygxvwkych5l81w0"; }; outputs = [ "out" "doc" "man" ]; diff --git a/pkgs/development/compilers/colm/default.nix b/pkgs/development/compilers/colm/default.nix index 8cf8a04f4eb..767023053c6 100644 --- a/pkgs/development/compilers/colm/default.nix +++ b/pkgs/development/compilers/colm/default.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { description = "A programming language for the analysis and transformation of computer languages"; homepage = http://www.colm.net/open-source/colm; license = licenses.gpl2; - platforms = [ "x86_64-linux" ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; maintainers = with maintainers; [ pSub ]; }; } diff --git a/pkgs/development/compilers/crystal/default.nix b/pkgs/development/compilers/crystal/default.nix index b8cbceb9767..8bad8f6f4d3 100644 --- a/pkgs/development/compilers/crystal/default.nix +++ b/pkgs/development/compilers/crystal/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchurl, boehmgc, libatomic_ops, pcre, libevent, libiconv, llvm_39, makeWrapper }: stdenv.mkDerivation rec { - version = "0.21.0"; + version = "0.22.0"; name = "crystal-${version}-1"; arch = { @@ -14,15 +14,15 @@ stdenv.mkDerivation rec { url = "https://github.com/crystal-lang/crystal/releases/download/${version}/crystal-${version}-1-${arch}.tar.gz"; sha256 = { - "x86_64-linux" = "0a44539df3813baea4381c314ad5f782b13cf1596e478851c52cd84193cc7a1f"; - "i686-linux" = "9a45287f94d329f5ebe77f5a0d71cd0e09c3db79b0b56f6fe4a5166beed707ef"; - "x86_64-darwin" = "e92abb33a9a592febb4e629ad68375b2577acd791a71220b8dc407904be469ee"; + "x86_64-linux" = "03c1nmjibz8f7yhrczd49gmccx4ivqz121c64hl384w69227p7bq"; + "i686-linux" = "1s8gpmxa9wpcc2a9csl205lcpipn1i7gwybapby3q34y7xnq9160"; + "x86_64-darwin" = "1bnfxb0hbkx4qlkc1l88sdhcnhacqzy31hh7ksz0prah83g6vbxa"; }."${stdenv.system}" or (throw "system ${stdenv.system} not supported"); }; src = fetchurl { url = "https://github.com/crystal-lang/crystal/archive/${version}.tar.gz"; - sha256 = "4dd01703f5304a0eda7f02fc362fba27ba069666097c0f921f8a3ee58808779c"; + sha256 = "0iw5i4hjzfxykwfdyzix23pgm3gxd79r9yss3abvva8cf7ci37sv"; }; # crystal on Darwin needs libiconv to build diff --git a/pkgs/development/compilers/dale/default.nix b/pkgs/development/compilers/dale/default.nix index 358bb060e48..6d9adaa1518 100644 --- a/pkgs/development/compilers/dale/default.nix +++ b/pkgs/development/compilers/dale/default.nix @@ -1,19 +1,27 @@ -{ stdenv, fetchFromGitHub, cmake, libffi, llvm_35, perl }: +{ stdenv +, fetchFromGitHub +, cmake +, pkgconfig +, libffi +, llvm_35 +, doCheck ? false +, perl +}: + +let version = "20170519"; -let version = "20170419"; - doCheck = false; in stdenv.mkDerivation { name = "dale-${version}"; src = fetchFromGitHub { owner = "tomhrr"; repo = "dale"; - rev = "64e072d0520a134b9ae8038104fa977776b6e0af"; - sha256 = "1apvq3v6ra8x0sj8gg9yavqsyxiggh2wnh1zbw2ccpg723bssl4a"; + rev = "39e16d8e89fa070de65a673d4462e783d530f95a"; + sha256 = "0dc5cjahv7lzlp92hidlh83rwgrpgb6xz2pnba2pm5xrv2pnsskl"; }; - buildInputs = [ cmake libffi llvm_35 ] ++ - stdenv.lib.optional doCheck perl; + buildInputs = [ cmake pkgconfig libffi llvm_35 ] + ++ stdenv.lib.optional doCheck perl; inherit doCheck; diff --git a/pkgs/development/compilers/emscripten-fastcomp/default.nix b/pkgs/development/compilers/emscripten-fastcomp/default.nix index d3d7561ddfb..99e22215bc7 100644 --- a/pkgs/development/compilers/emscripten-fastcomp/default.nix +++ b/pkgs/development/compilers/emscripten-fastcomp/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, cmake, python, ... }: let - rev = "1.37.9"; + rev = "1.37.10"; gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc; in stdenv.mkDerivation rec { @@ -10,14 +10,14 @@ stdenv.mkDerivation rec { src = fetchFromGitHub { owner = "kripken"; repo = "emscripten-fastcomp"; - sha256 = "0dvay98hlajhwgl5s58sh8s79i4nbcl3gajssgzimk0id8fa0ifx"; + sha256 = "0zl55jaas3cibjscr5q1q6rgw63wqwyc9iffhvs4xi9g1bk5cnx9"; inherit rev; }; srcFL = fetchFromGitHub { owner = "kripken"; repo = "emscripten-fastcomp-clang"; - sha256 = "1ilrb6p3vybjz0hj8hc80hpm0y01794v488dywwj81khhqahnhcv"; + sha256 = "0cdvld0lfl3cl7m6yax7f87ip9iq4rmz8icr68l2g8bl2w8qd89j"; inherit rev; }; diff --git a/pkgs/development/compilers/emscripten/default.nix b/pkgs/development/compilers/emscripten/default.nix index 351e045b50a..ad1cd437ffa 100644 --- a/pkgs/development/compilers/emscripten/default.nix +++ b/pkgs/development/compilers/emscripten/default.nix @@ -1,7 +1,7 @@ { stdenv, fetchFromGitHub, emscriptenfastcomp, python, nodejs, closurecompiler, jre }: let - rev = "1.37.9"; + rev = "1.37.10"; appdir = "share/emscripten"; in @@ -11,7 +11,7 @@ stdenv.mkDerivation { src = fetchFromGitHub { owner = "kripken"; repo = "emscripten"; - sha256 = "0dmvhw4j9bdqbdknz7ibg2fwzynw4w8ksnj8rkswdmp660889krp"; + sha256 = "08f3zagxzsj96i09gjg1djd1bmy1gr1ar8n96mzg3ykaygf82d0s"; inherit rev; }; @@ -34,7 +34,7 @@ stdenv.mkDerivation { echo "NODE_JS = '${nodejs}/bin/node'" >> $out/${appdir}/config echo "JS_ENGINES = [NODE_JS]" >> $out/${appdir}/config echo "COMPILER_ENGINE = NODE_JS" >> $out/${appdir}/config - echo "CLOSURE_COMPILER = '${closurecompiler}/share/java/compiler.jar'" >> $out/${appdir}/config + echo "CLOSURE_COMPILER = '${closurecompiler}/share/java/closure-compiler-v${closurecompiler.version}.jar'" >> $out/${appdir}/config echo "JAVA = '${jre}/bin/java'" >> $out/${appdir}/config ''; diff --git a/pkgs/development/compilers/fstar/default.nix b/pkgs/development/compilers/fstar/default.nix index 24a4135bde1..00714875ffc 100644 --- a/pkgs/development/compilers/fstar/default.nix +++ b/pkgs/development/compilers/fstar/default.nix @@ -1,26 +1,37 @@ -{ stdenv, fetchFromGitHub, mono, fsharp, dotnetPackages, z3, ocamlPackages, openssl, makeWrapper }: +{ stdenv, fetchFromGitHub, mono, fsharp, dotnetPackages, z3, ocamlPackages, openssl, makeWrapper, pkgconfig, file }: stdenv.mkDerivation rec { name = "fstar-${version}"; - version = "0.9.2.0"; + version = "0.9.4.0"; src = fetchFromGitHub { owner = "FStarLang"; repo = "FStar"; rev = "v${version}"; - sha256 = "0vrxmxfaslngvbvkzpm1gfl1s34hdsprv8msasxf9sjqc3hlir3l"; + sha256 = "130779p5plsgvz0dkcqycns3vwrvyfl138nq2xdhd3rkdsbyyvb7"; }; nativeBuildInputs = [ makeWrapper ]; buildInputs = with ocamlPackages; [ - mono fsharp z3 dotnetPackages.FsLexYacc ocaml findlib ocaml_batteries openssl + mono fsharp z3 dotnetPackages.FsLexYacc ocaml findlib ocaml_batteries + zarith camlp4 yojson pprint openssl pkgconfig file ]; preBuild = '' substituteInPlace src/Makefile --replace "\$(RUNTIME) VS/.nuget/NuGet.exe" "true" + substituteInPlace src/VS/.nuget/NuGet.targets --replace "mono" "true" - source setenv.sh + # Fails with bad interpreter otherwise + patchShebangs src/tools + patchShebangs bin + + export FSharpTargetsPath="$(dirname $(pkg-config FSharp.Core --variable=Libraries))/Microsoft.FSharp.Targets" + # remove hardcoded windows paths + sed -i '/<FSharpTargetsPath/d' src/*/*.fsproj + + mkdir -p src/VS/packages/FsLexYacc.6.1.0 + ln -s ${dotnetPackages.FsLexYacc}/lib/dotnet/FsLexYacc src/VS/packages/FsLexYacc.6.1.0/build ''; makeFlags = [ diff --git a/pkgs/development/compilers/gcc/4.5/default.nix b/pkgs/development/compilers/gcc/4.5/default.nix index 12e7e23e90b..288a91398d2 100644 --- a/pkgs/development/compilers/gcc/4.5/default.nix +++ b/pkgs/development/compilers/gcc/4.5/default.nix @@ -20,12 +20,12 @@ , enableMultilib ? false , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null , libpthread ? null, libpthreadCross ? null # required for GNU/Hurd , stripped ? true +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -78,6 +78,9 @@ let version = "4.5.4"; withArch + withCpu + withAbi + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -224,7 +227,7 @@ stdenv.mkDerivation ({ ++ (optional langJava boehmgc) ++ (optionals langJava [zip unzip]) ++ (optionals javaAwtGtk ([gtk2 pkgconfig libart_lgpl] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) ; @@ -271,15 +274,15 @@ stdenv.mkDerivation ({ targetConfig = if cross != null then cross.config else null; crossAttrs = { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -311,7 +314,7 @@ stdenv.mkDerivation ({ ${if langAda then " --enable-libada" else ""} ${if cross == null && stdenv.isi686 then "--with-arch=i686" else ""} ${if cross != null then crossConfigureFlags else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ''; }; diff --git a/pkgs/development/compilers/gcc/4.8/default.nix b/pkgs/development/compilers/gcc/4.8/default.nix index e6f990113cc..2d615e3b8e8 100644 --- a/pkgs/development/compilers/gcc/4.8/default.nix +++ b/pkgs/development/compilers/gcc/4.8/default.nix @@ -26,7 +26,6 @@ , enablePlugin ? true # whether to support user-supplied plug-ins , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null @@ -34,6 +33,7 @@ , stripped ? true , gnused ? null , darwin ? null +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -123,12 +123,12 @@ let version = "4.8.5"; crossMingw = cross != null && cross.libc == "msvcrt"; crossDarwin = cross != null && cross.libc == "libSystem"; crossConfigureFlags = let - gccArch = stdenv.cross.gcc.arch or null; - gccCpu = stdenv.cross.gcc.cpu or null; - gccAbi = stdenv.cross.gcc.abi or null; - gccFpu = stdenv.cross.gcc.fpu or null; - gccFloat = stdenv.cross.gcc.float or null; - gccMode = stdenv.cross.gcc.mode or null; + gccArch = targetPlatform.gcc.arch or null; + gccCpu = targetPlatform.gcc.cpu or null; + gccAbi = targetPlatform.gcc.abi or null; + gccFpu = targetPlatform.gcc.fpu or null; + gccFloat = targetPlatform.gcc.float or null; + gccMode = targetPlatform.gcc.mode or null; withArch = if gccArch != null then " --with-arch=${gccArch}" else ""; withCpu = if gccCpu != null then " --with-cpu=${gccCpu}" else ""; withAbi = if gccAbi != null then " --with-abi=${gccAbi}" else ""; @@ -143,6 +143,9 @@ let version = "4.8.5"; withFpu + withFloat + withMode + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -169,10 +172,6 @@ let version = "4.8.5"; (if crossDarwin then " --with-sysroot=${libcCross.out}/share/sysroot" else " --with-headers=${libcCross.dev}/include") + # Ensure that -print-prog-name is able to find the correct programs. - (stdenv.lib.optionalString (crossMingw || crossDarwin) ( - " --with-as=${binutilsCross}/bin/${cross.config}-as" + - " --with-ld=${binutilsCross}/bin/${cross.config}-ld" - )) + " --enable-__cxa_atexit" + " --enable-long-long" + (if crossMingw then @@ -293,7 +292,7 @@ stdenv.mkDerivation ({ ++ (optional (zlib != null) zlib) ++ (optionals langJava [ boehmgc zip unzip ]) ++ (optionals javaAwtGtk ([ gtk2 libart_lgpl ] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) @@ -382,26 +381,26 @@ stdenv.mkDerivation ({ else "install"; crossAttrs = let - xgccArch = stdenv.cross.gcc.arch or null; - xgccCpu = stdenv.cross.gcc.cpu or null; - xgccAbi = stdenv.cross.gcc.abi or null; - xgccFpu = stdenv.cross.gcc.fpu or null; - xgccFloat = stdenv.cross.gcc.float or null; + xgccArch = targetPlatform.gcc.arch or null; + xgccCpu = targetPlatform.gcc.cpu or null; + xgccAbi = targetPlatform.gcc.abi or null; + xgccFpu = targetPlatform.gcc.fpu or null; + xgccFloat = targetPlatform.gcc.float or null; xwithArch = if xgccArch != null then " --with-arch=${xgccArch}" else ""; xwithCpu = if xgccCpu != null then " --with-cpu=${xgccCpu}" else ""; xwithAbi = if xgccAbi != null then " --with-abi=${xgccAbi}" else ""; xwithFpu = if xgccFpu != null then " --with-fpu=${xgccFpu}" else ""; xwithFloat = if xgccFloat != null then " --with-float=${xgccFloat}" else ""; in { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -431,7 +430,7 @@ stdenv.mkDerivation ({ ) } ${if langAda then " --enable-libada" else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ${xwithArch} ${xwithCpu} ${xwithAbi} diff --git a/pkgs/development/compilers/gcc/4.9/default.nix b/pkgs/development/compilers/gcc/4.9/default.nix index eb03148a4b8..93f46fdd0f6 100644 --- a/pkgs/development/compilers/gcc/4.9/default.nix +++ b/pkgs/development/compilers/gcc/4.9/default.nix @@ -26,7 +26,6 @@ , enablePlugin ? true # whether to support user-supplied plug-ins , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null @@ -34,6 +33,7 @@ , stripped ? true , gnused ? null , darwin ? null +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -125,12 +125,12 @@ let version = "4.9.4"; crossMingw = cross != null && cross.libc == "msvcrt"; crossDarwin = cross != null && cross.libc == "libSystem"; crossConfigureFlags = let - gccArch = stdenv.cross.gcc.arch or null; - gccCpu = stdenv.cross.gcc.cpu or null; - gccAbi = stdenv.cross.gcc.abi or null; - gccFpu = stdenv.cross.gcc.fpu or null; - gccFloat = stdenv.cross.gcc.float or null; - gccMode = stdenv.cross.gcc.mode or null; + gccArch = targetPlatform.gcc.arch or null; + gccCpu = targetPlatform.gcc.cpu or null; + gccAbi = targetPlatform.gcc.abi or null; + gccFpu = targetPlatform.gcc.fpu or null; + gccFloat = targetPlatform.gcc.float or null; + gccMode = targetPlatform.gcc.mode or null; withArch = if gccArch != null then " --with-arch=${gccArch}" else ""; withCpu = if gccCpu != null then " --with-cpu=${gccCpu}" else ""; withAbi = if gccAbi != null then " --with-abi=${gccAbi}" else ""; @@ -145,6 +145,9 @@ let version = "4.9.4"; withFpu + withFloat + withMode + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -169,11 +172,6 @@ let version = "4.9.4"; else (if crossDarwin then " --with-sysroot=${libcCross.out}/share/sysroot" else " --with-headers=${libcCross.dev}/include") + - # Ensure that -print-prog-name is able to find the correct programs. - (stdenv.lib.optionalString (crossMingw || crossDarwin) ( - " --with-as=${binutilsCross}/bin/${cross.config}-as" + - " --with-ld=${binutilsCross}/bin/${cross.config}-ld" - )) + " --enable-__cxa_atexit" + " --enable-long-long" + (if crossMingw then @@ -298,7 +296,7 @@ stdenv.mkDerivation ({ ++ (optional (zlib != null) zlib) ++ (optionals langJava [ boehmgc zip unzip ]) ++ (optionals javaAwtGtk ([ gtk2 libart_lgpl ] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) @@ -389,26 +387,26 @@ stdenv.mkDerivation ({ else "install"; crossAttrs = let - xgccArch = stdenv.cross.gcc.arch or null; - xgccCpu = stdenv.cross.gcc.cpu or null; - xgccAbi = stdenv.cross.gcc.abi or null; - xgccFpu = stdenv.cross.gcc.fpu or null; - xgccFloat = stdenv.cross.gcc.float or null; + xgccArch = targetPlatform.gcc.arch or null; + xgccCpu = targetPlatform.gcc.cpu or null; + xgccAbi = targetPlatform.gcc.abi or null; + xgccFpu = targetPlatform.gcc.fpu or null; + xgccFloat = targetPlatform.gcc.float or null; xwithArch = if xgccArch != null then " --with-arch=${xgccArch}" else ""; xwithCpu = if xgccCpu != null then " --with-cpu=${xgccCpu}" else ""; xwithAbi = if xgccAbi != null then " --with-abi=${xgccAbi}" else ""; xwithFpu = if xgccFpu != null then " --with-fpu=${xgccFpu}" else ""; xwithFloat = if xgccFloat != null then " --with-float=${xgccFloat}" else ""; in { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -438,7 +436,7 @@ stdenv.mkDerivation ({ ) } ${if langAda then " --enable-libada" else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ${xwithArch} ${xwithCpu} ${xwithAbi} diff --git a/pkgs/development/compilers/gcc/5/default.nix b/pkgs/development/compilers/gcc/5/default.nix index 3e9104a82fb..296b899830b 100644 --- a/pkgs/development/compilers/gcc/5/default.nix +++ b/pkgs/development/compilers/gcc/5/default.nix @@ -26,7 +26,6 @@ , enablePlugin ? true # whether to support user-supplied plug-ins , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null @@ -36,6 +35,7 @@ , binutils ? null , cloog # unused; just for compat with gcc4, as we override the parameter on some places , darwin ? null +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -129,12 +129,12 @@ let version = "5.4.0"; crossMingw = cross != null && cross.libc == "msvcrt"; crossDarwin = cross != null && cross.libc == "libSystem"; crossConfigureFlags = let - gccArch = stdenv.cross.gcc.arch or null; - gccCpu = stdenv.cross.gcc.cpu or null; - gccAbi = stdenv.cross.gcc.abi or null; - gccFpu = stdenv.cross.gcc.fpu or null; - gccFloat = stdenv.cross.gcc.float or null; - gccMode = stdenv.cross.gcc.mode or null; + gccArch = targetPlatform.gcc.arch or null; + gccCpu = targetPlatform.gcc.cpu or null; + gccAbi = targetPlatform.gcc.abi or null; + gccFpu = targetPlatform.gcc.fpu or null; + gccFloat = targetPlatform.gcc.float or null; + gccMode = targetPlatform.gcc.mode or null; withArch = if gccArch != null then " --with-arch=${gccArch}" else ""; withCpu = if gccCpu != null then " --with-cpu=${gccCpu}" else ""; withAbi = if gccAbi != null then " --with-abi=${gccAbi}" else ""; @@ -149,6 +149,9 @@ let version = "5.4.0"; withFpu + withFloat + withMode + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -173,11 +176,6 @@ let version = "5.4.0"; else (if crossDarwin then " --with-sysroot=${getLib libcCross}/share/sysroot" else " --with-headers=${getDev libcCross}/include") + - # Ensure that -print-prog-name is able to find the correct programs. - (stdenv.lib.optionalString (crossMingw || crossDarwin) ( - " --with-as=${binutilsCross}/bin/${cross.config}-as" + - " --with-ld=${binutilsCross}/bin/${cross.config}-ld" - )) + " --enable-__cxa_atexit" + " --enable-long-long" + (if crossMingw then @@ -237,10 +235,16 @@ stdenv.mkDerivation ({ # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. - prePatch = if stdenv.isDarwin then '' + prePatch = stdenv.lib.optionalString stdenv.isDarwin '' substituteInPlace gcc/config/darwin-c.c \ --replace 'if (stdinc)' 'if (0)' - '' else null; + + substituteInPlace libgcc/config/t-slibgcc-darwin \ + --replace "-install_name @shlib_slibdir@/\$(SHLIB_INSTALL_NAME)" "-install_name $lib/lib/\$(SHLIB_INSTALL_NAME)" + + substituteInPlace libgfortran/configure \ + --replace "-install_name \\\$rpath/\\\$soname" "-install_name $lib/lib/\\\$soname" + ''; postPatch = if (stdenv.isGNU @@ -308,7 +312,7 @@ stdenv.mkDerivation ({ ++ (optional (zlib != null) zlib) ++ (optionals langJava [ boehmgc zip unzip ]) ++ (optionals javaAwtGtk ([ gtk2 libart_lgpl ] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) @@ -398,26 +402,26 @@ stdenv.mkDerivation ({ else "install"; crossAttrs = let - xgccArch = stdenv.cross.gcc.arch or null; - xgccCpu = stdenv.cross.gcc.cpu or null; - xgccAbi = stdenv.cross.gcc.abi or null; - xgccFpu = stdenv.cross.gcc.fpu or null; - xgccFloat = stdenv.cross.gcc.float or null; + xgccArch = targetPlatform.gcc.arch or null; + xgccCpu = targetPlatform.gcc.cpu or null; + xgccAbi = targetPlatform.gcc.abi or null; + xgccFpu = targetPlatform.gcc.fpu or null; + xgccFloat = targetPlatform.gcc.float or null; xwithArch = if xgccArch != null then " --with-arch=${xgccArch}" else ""; xwithCpu = if xgccCpu != null then " --with-cpu=${xgccCpu}" else ""; xwithAbi = if xgccAbi != null then " --with-abi=${xgccAbi}" else ""; xwithFpu = if xgccFpu != null then " --with-fpu=${xgccFpu}" else ""; xwithFloat = if xgccFloat != null then " --with-float=${xgccFloat}" else ""; in { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -446,7 +450,7 @@ stdenv.mkDerivation ({ ) } ${if langAda then " --enable-libada" else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ${xwithArch} ${xwithCpu} ${xwithAbi} diff --git a/pkgs/development/compilers/gcc/6/default.nix b/pkgs/development/compilers/gcc/6/default.nix index b4e588f6b14..c23968d2126 100644 --- a/pkgs/development/compilers/gcc/6/default.nix +++ b/pkgs/development/compilers/gcc/6/default.nix @@ -26,7 +26,6 @@ , enablePlugin ? true # whether to support user-supplied plug-ins , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null @@ -36,6 +35,7 @@ , binutils ? null , cloog # unused; just for compat with gcc4, as we override the parameter on some places , darwin ? null +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -125,12 +125,12 @@ let version = "6.3.0"; crossMingw = cross != null && cross.libc == "msvcrt"; crossDarwin = cross != null && cross.libc == "libSystem"; crossConfigureFlags = let - gccArch = stdenv.cross.gcc.arch or null; - gccCpu = stdenv.cross.gcc.cpu or null; - gccAbi = stdenv.cross.gcc.abi or null; - gccFpu = stdenv.cross.gcc.fpu or null; - gccFloat = stdenv.cross.gcc.float or null; - gccMode = stdenv.cross.gcc.mode or null; + gccArch = targetPlatform.gcc.arch or null; + gccCpu = targetPlatform.gcc.cpu or null; + gccAbi = targetPlatform.gcc.abi or null; + gccFpu = targetPlatform.gcc.fpu or null; + gccFloat = targetPlatform.gcc.float or null; + gccMode = targetPlatform.gcc.mode or null; withArch = if gccArch != null then " --with-arch=${gccArch}" else ""; withCpu = if gccCpu != null then " --with-cpu=${gccCpu}" else ""; withAbi = if gccAbi != null then " --with-abi=${gccAbi}" else ""; @@ -145,6 +145,9 @@ let version = "6.3.0"; withFpu + withFloat + withMode + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -169,11 +172,6 @@ let version = "6.3.0"; else (if crossDarwin then " --with-sysroot=${getLib libcCross}/share/sysroot" else " --with-headers=${getDev libcCross}/include") + - # Ensure that -print-prog-name is able to find the correct programs. - (stdenv.lib.optionalString (crossMingw || crossDarwin) ( - " --with-as=${binutilsCross}/bin/${cross.config}-as" + - " --with-ld=${binutilsCross}/bin/${cross.config}-ld" - )) + " --enable-__cxa_atexit" + " --enable-long-long" + (if crossMingw then @@ -296,7 +294,7 @@ stdenv.mkDerivation ({ ++ (optional (zlib != null) zlib) ++ (optionals langJava [ boehmgc zip unzip ]) ++ (optionals javaAwtGtk ([ gtk2 libart_lgpl ] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) @@ -386,26 +384,26 @@ stdenv.mkDerivation ({ else "install"; crossAttrs = let - xgccArch = stdenv.cross.gcc.arch or null; - xgccCpu = stdenv.cross.gcc.cpu or null; - xgccAbi = stdenv.cross.gcc.abi or null; - xgccFpu = stdenv.cross.gcc.fpu or null; - xgccFloat = stdenv.cross.gcc.float or null; + xgccArch = targetPlatform.gcc.arch or null; + xgccCpu = targetPlatform.gcc.cpu or null; + xgccAbi = targetPlatform.gcc.abi or null; + xgccFpu = targetPlatform.gcc.fpu or null; + xgccFloat = targetPlatform.gcc.float or null; xwithArch = if xgccArch != null then " --with-arch=${xgccArch}" else ""; xwithCpu = if xgccCpu != null then " --with-cpu=${xgccCpu}" else ""; xwithAbi = if xgccAbi != null then " --with-abi=${xgccAbi}" else ""; xwithFpu = if xgccFpu != null then " --with-fpu=${xgccFpu}" else ""; xwithFloat = if xgccFloat != null then " --with-float=${xgccFloat}" else ""; in { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -434,7 +432,7 @@ stdenv.mkDerivation ({ ) } ${if langAda then " --enable-libada" else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ${xwithArch} ${xwithCpu} ${xwithAbi} diff --git a/pkgs/development/compilers/gcc/builder.sh b/pkgs/development/compilers/gcc/builder.sh index de3e9ba3ef5..ee56425f00b 100644 --- a/pkgs/development/compilers/gcc/builder.sh +++ b/pkgs/development/compilers/gcc/builder.sh @@ -212,6 +212,7 @@ postInstall() { # Move runtime libraries to $lib. moveToOutput "lib/lib*.so*" "$lib" moveToOutput "lib/lib*.la" "$lib" + moveToOutput "lib/lib*.dylib" "$lib" moveToOutput "share/gcc-*/python" "$lib" for i in "$lib"/lib/*.{la,py}; do @@ -221,6 +222,7 @@ postInstall() { if [ -n "$enableMultilib" ]; then moveToOutput "lib64/lib*.so*" "$lib" moveToOutput "lib64/lib*.la" "$lib" + moveToOutput "lib64/lib*.dylib" "$lib" for i in "$lib"/lib64/*.{la,py}; do substituteInPlace "$i" --replace "$out" "$lib" @@ -251,6 +253,16 @@ postInstall() { done fi + if type "install_name_tool"; then + for i in "$lib"/lib/*.*.dylib; do + install_name_tool -id "$i" "$i" || true + for old_path in $(otool -L "$i" | grep "$out" | awk '{print $1}'); do + new_path=`echo "$old_path" | sed "s,$out,$lib,"` + install_name_tool -change "$old_path" "$new_path" "$i" || true + done + done + fi + # Get rid of some "fixed" header files rm -rfv $out/lib/gcc/*/*/include-fixed/{root,linux} diff --git a/pkgs/development/compilers/gcc/snapshot/default.nix b/pkgs/development/compilers/gcc/snapshot/default.nix index 12eb8b3a542..9c3b7a4e7df 100644 --- a/pkgs/development/compilers/gcc/snapshot/default.nix +++ b/pkgs/development/compilers/gcc/snapshot/default.nix @@ -26,7 +26,6 @@ , enablePlugin ? true # whether to support user-supplied plug-ins , name ? "gcc" , cross ? null -, binutilsCross ? null , libcCross ? null , crossStageStatic ? true , gnat ? null @@ -37,6 +36,7 @@ , cloog # unused; just for compat with gcc4, as we override the parameter on some places , darwin ? null , flex ? null +, buildPlatform, hostPlatform, targetPlatform }: assert langJava -> zip != null && unzip != null @@ -125,12 +125,12 @@ let version = "7-20170409"; crossMingw = cross != null && cross.libc == "msvcrt"; crossDarwin = cross != null && cross.libc == "libSystem"; crossConfigureFlags = let - gccArch = stdenv.cross.gcc.arch or null; - gccCpu = stdenv.cross.gcc.cpu or null; - gccAbi = stdenv.cross.gcc.abi or null; - gccFpu = stdenv.cross.gcc.fpu or null; - gccFloat = stdenv.cross.gcc.float or null; - gccMode = stdenv.cross.gcc.mode or null; + gccArch = targetPlatform.gcc.arch or null; + gccCpu = targetPlatform.gcc.cpu or null; + gccAbi = targetPlatform.gcc.abi or null; + gccFpu = targetPlatform.gcc.fpu or null; + gccFloat = targetPlatform.gcc.float or null; + gccMode = targetPlatform.gcc.mode or null; withArch = if gccArch != null then " --with-arch=${gccArch}" else ""; withCpu = if gccCpu != null then " --with-cpu=${gccCpu}" else ""; withAbi = if gccAbi != null then " --with-abi=${gccAbi}" else ""; @@ -145,6 +145,9 @@ let version = "7-20170409"; withFpu + withFloat + withMode + + # Ensure that -print-prog-name is able to find the correct programs. + " --with-as=${binutils}/bin/${cross.config}-as" + + " --with-ld=${binutils}/bin/${cross.config}-ld" + (if crossMingw && crossStageStatic then " --with-headers=${libcCross}/include" + " --with-gcc" + @@ -170,10 +173,6 @@ let version = "7-20170409"; (if crossDarwin then " --with-sysroot=${getLib libcCross}/share/sysroot" else " --with-headers=${getDev libcCross}/include") + # Ensure that -print-prog-name is able to find the correct programs. - (stdenv.lib.optionalString (crossMingw || crossDarwin) ( - " --with-as=${binutilsCross}/bin/${cross.config}-as" + - " --with-ld=${binutilsCross}/bin/${cross.config}-ld" - )) + " --enable-__cxa_atexit" + " --enable-long-long" + (if crossMingw then @@ -296,7 +295,7 @@ stdenv.mkDerivation ({ ++ (optional (zlib != null) zlib) ++ (optionals langJava [ boehmgc zip unzip ]) ++ (optionals javaAwtGtk ([ gtk2 libart_lgpl ] ++ xlibs)) - ++ (optionals (cross != null) [binutilsCross]) + ++ (optionals (cross != null) [binutils]) ++ (optionals langAda [gnatboot]) ++ (optionals langVhdl [gnat]) @@ -386,26 +385,26 @@ stdenv.mkDerivation ({ else "install"; crossAttrs = let - xgccArch = stdenv.cross.gcc.arch or null; - xgccCpu = stdenv.cross.gcc.cpu or null; - xgccAbi = stdenv.cross.gcc.abi or null; - xgccFpu = stdenv.cross.gcc.fpu or null; - xgccFloat = stdenv.cross.gcc.float or null; + xgccArch = targetPlatform.gcc.arch or null; + xgccCpu = targetPlatform.gcc.cpu or null; + xgccAbi = targetPlatform.gcc.abi or null; + xgccFpu = targetPlatform.gcc.fpu or null; + xgccFloat = targetPlatform.gcc.float or null; xwithArch = if xgccArch != null then " --with-arch=${xgccArch}" else ""; xwithCpu = if xgccCpu != null then " --with-cpu=${xgccCpu}" else ""; xwithAbi = if xgccAbi != null then " --with-abi=${xgccAbi}" else ""; xwithFpu = if xgccFpu != null then " --with-fpu=${xgccFpu}" else ""; xwithFloat = if xgccFloat != null then " --with-float=${xgccFloat}" else ""; in { - AR = "${stdenv.cross.config}-ar"; - LD = "${stdenv.cross.config}-ld"; - CC = "${stdenv.cross.config}-gcc"; - CXX = "${stdenv.cross.config}-gcc"; - AR_FOR_TARGET = "${stdenv.cross.config}-ar"; - LD_FOR_TARGET = "${stdenv.cross.config}-ld"; - CC_FOR_TARGET = "${stdenv.cross.config}-gcc"; - NM_FOR_TARGET = "${stdenv.cross.config}-nm"; - CXX_FOR_TARGET = "${stdenv.cross.config}-g++"; + AR = "${targetPlatform.config}-ar"; + LD = "${targetPlatform.config}-ld"; + CC = "${targetPlatform.config}-gcc"; + CXX = "${targetPlatform.config}-gcc"; + AR_FOR_TARGET = "${targetPlatform.config}-ar"; + LD_FOR_TARGET = "${targetPlatform.config}-ld"; + CC_FOR_TARGET = "${targetPlatform.config}-gcc"; + NM_FOR_TARGET = "${targetPlatform.config}-nm"; + CXX_FOR_TARGET = "${targetPlatform.config}-g++"; # If we are making a cross compiler, cross != null NIX_CC_CROSS = if cross == null then "${stdenv.ccCross}" else ""; dontStrip = true; @@ -434,7 +433,7 @@ stdenv.mkDerivation ({ ) } ${if langAda then " --enable-libada" else ""} - --target=${stdenv.cross.config} + --target=${targetPlatform.config} ${xwithArch} ${xwithCpu} ${xwithAbi} diff --git a/pkgs/development/compilers/ghc/head.nix b/pkgs/development/compilers/ghc/head.nix index ed6f4717446..006a9f8fbc4 100644 --- a/pkgs/development/compilers/ghc/head.nix +++ b/pkgs/development/compilers/ghc/head.nix @@ -99,17 +99,17 @@ in stdenv.mkDerivation (rec { configureFlags = [ "CC=${stdenv.ccCross}/bin/${cross.config}-cc" - "LD=${stdenv.binutilsCross}/bin/${cross.config}-ld" - "AR=${stdenv.binutilsCross}/bin/${cross.config}-ar" - "NM=${stdenv.binutilsCross}/bin/${cross.config}-nm" - "RANLIB=${stdenv.binutilsCross}/bin/${cross.config}-ranlib" + "LD=${stdenv.binutils}/bin/${cross.config}-ld" + "AR=${stdenv.binutils}/bin/${cross.config}-ar" + "NM=${stdenv.binutils}/bin/${cross.config}-nm" + "RANLIB=${stdenv.binutils}/bin/${cross.config}-ranlib" "--target=${cross.config}" "--enable-bootstrap-with-devel-snapshot" ] ++ # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/ lib.optional (cross.config or null == "aarch64-apple-darwin14") "--disable-large-address-space"; - buildInputs = commonBuildInputs ++ [ stdenv.ccCross stdenv.binutilsCross ]; + buildInputs = commonBuildInputs ++ [ stdenv.ccCross stdenv.binutils ]; dontSetConfigureCross = true; @@ -118,6 +118,6 @@ in stdenv.mkDerivation (rec { cc = "${stdenv.ccCross}/bin/${cross.config}-cc"; - ld = "${stdenv.binutilsCross}/bin/${cross.config}-ld"; + ld = "${stdenv.binutils}/bin/${cross.config}-ld"; }; }) diff --git a/pkgs/development/compilers/ghcjs/base.nix b/pkgs/development/compilers/ghcjs/base.nix index ab68a8fe3b5..4c9ae16a313 100644 --- a/pkgs/development/compilers/ghcjs/base.nix +++ b/pkgs/development/compilers/ghcjs/base.nix @@ -190,6 +190,6 @@ in mkDerivation (rec { description = "A Haskell to JavaScript compiler that uses the GHC API"; license = stdenv.lib.licenses.bsd3; platforms = ghc.meta.platforms; - maintainers = with stdenv.lib.maintainers; [ jwiegley cstrahan ]; + maintainers = with stdenv.lib.maintainers; [ jwiegley cstrahan dmjio ]; inherit broken; }) diff --git a/pkgs/development/compilers/ghcjs/default.nix b/pkgs/development/compilers/ghcjs/default.nix index eda724e5947..f23da1149c5 100644 --- a/pkgs/development/compilers/ghcjs/default.nix +++ b/pkgs/development/compilers/ghcjs/default.nix @@ -2,5 +2,5 @@ bootPkgs.callPackage ./base.nix { inherit bootPkgs; - broken = true; # http://hydra.nixos.org/build/45110274 + broken = false; } diff --git a/pkgs/development/compilers/gnu-cobol/default.nix b/pkgs/development/compilers/gnu-cobol/default.nix new file mode 100644 index 00000000000..e5ec3659f0b --- /dev/null +++ b/pkgs/development/compilers/gnu-cobol/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchurl, gcc, makeWrapper +, db, gmp, ncurses }: + +let version = { + maj = "2.0"; + min = "rc-2"; +}; +in +stdenv.mkDerivation rec { + name = "gnu-cobol-${version.maj}${version.min}"; + + src = fetchurl { + url = "https://sourceforge.com/projects/open-cobol/files/gnu-cobol/${version.maj}/gnu-cobol-${version.maj}_${version.min}.tar.gz"; + sha256 = "1pj7mjnp3l76zvzrh1xa6d4kw3jkvzqh39sbf02kiinq4y65s7zj"; + }; + + nativeBuildInputs = [ makeWrapper ]; + + buildInputs = [ db gmp ncurses ]; + + postInstall = with stdenv.lib; '' + wrapProgram "$out/bin/cobc" \ + --prefix PATH ':' "${gcc}/bin" \ + --prefix NIX_LDFLAGS ' ' "'$NIX_LDFLAGS'" \ + --prefix NIX_CFLAGS_COMPILE ' ' "'$NIX_CFLAGS_COMPILE'" + ''; + + meta = with stdenv.lib; { + description = "An open-source COBOL compiler"; + homepage = http://sourceforge.net/projects/open-cobol/; + license = licenses.gpl3; + maintainers = with maintainers; [ ericsagnes ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/development/compilers/go/1.7.nix b/pkgs/development/compilers/go/1.7.nix index 76f6141e2e3..7ecae36a4d5 100644 --- a/pkgs/development/compilers/go/1.7.nix +++ b/pkgs/development/compilers/go/1.7.nix @@ -24,13 +24,13 @@ in stdenv.mkDerivation rec { name = "go-${version}"; - version = "1.7.4"; + version = "1.7.5"; src = fetchFromGitHub { owner = "golang"; repo = "go"; rev = "go${version}"; - sha256 = "1ks3xph20afrfp3vqs1sjnkpjb0lgxblv8706wa3iiyg7rka4axv"; + sha256 = "00radlwbrssn0x3naamb33cfx7ap2jv7s51bqr705nmn2j5yyblk"; }; # perl is used for testing go vet @@ -105,7 +105,7 @@ stdenv.mkDerivation rec { patches = [ ./remove-tools-1.7.patch - ./ssl-cert-file-1.7.patch + ./ssl-cert-file.patch ./creds-test.patch # This test checks for the wrong thing with recent tzdata. It's been fixed in master but the patch diff --git a/pkgs/development/compilers/go/1.8.nix b/pkgs/development/compilers/go/1.8.nix index 60125b2e22a..0be559da79c 100644 --- a/pkgs/development/compilers/go/1.8.nix +++ b/pkgs/development/compilers/go/1.8.nix @@ -1,6 +1,6 @@ { stdenv, fetchFromGitHub, tzdata, iana-etc, go_bootstrap, runCommand, writeScriptBin , perl, which, pkgconfig, patch, fetchpatch -, pcre, cacert +, pcre, cacert, llvm , Security, Foundation, bash }: let @@ -24,13 +24,13 @@ in stdenv.mkDerivation rec { name = "go-${version}"; - version = "1.8"; + version = "1.8.1"; src = fetchFromGitHub { owner = "golang"; repo = "go"; rev = "go${version}"; - sha256 = "0plm11rqrqz7frwz0jjcm13x939yhny755ks1adxjzmsngln9prl"; + sha256 = "1157mmzjpk887cpcpn2qy9c69anc22c4p3cjpl84zl7an41x660j"; }; # perl is used for testing go vet @@ -107,18 +107,16 @@ stdenv.mkDerivation rec { patches = [ ./remove-tools-1.8.patch - ./ssl-cert-file-1.8.patch + ./ssl-cert-file.patch ./creds-test.patch ./remove-test-pie-1.8.patch - - # This test checks for the wrong thing with recent tzdata. It's been fixed in master but the patch - # works fine here for now. - (fetchpatch { - url = "https://github.com/golang/go/commit/91563ced5897faf729a34be7081568efcfedda31.patch"; - sha256 = "1ny5l3f8a9dpjjrnjnsplb66308a0x13sa0wwr4j6yrkc8j4qxqi"; - }) ]; + postPatch = optionalString stdenv.isDarwin '' + echo "substitute hardcoded dsymutil with ${llvm}/bin/llvm-dsymutil" + substituteInPlace "src/cmd/link/internal/ld/lib.go" --replace dsymutil ${llvm}/bin/llvm-dsymutil + ''; + NIX_SSL_CERT_FILE = "${cacert}/etc/ssl/certs/ca-bundle.crt"; GOOS = if stdenv.isDarwin then "darwin" else "linux"; diff --git a/pkgs/development/compilers/go/ssl-cert-file-1.7.patch b/pkgs/development/compilers/go/ssl-cert-file-1.7.patch deleted file mode 100644 index e35ad9e4b75..00000000000 --- a/pkgs/development/compilers/go/ssl-cert-file-1.7.patch +++ /dev/null @@ -1,78 +0,0 @@ -diff --git a/src/crypto/x509/root_cgo_darwin.go b/src/crypto/x509/root_cgo_darwin.go -index a4b33c7..9700b75 100644 ---- a/src/crypto/x509/root_cgo_darwin.go -+++ b/src/crypto/x509/root_cgo_darwin.go -@@ -151,11 +151,20 @@ int FetchPEMRoots(CFDataRef *pemRoots) { - import "C" - import ( - "errors" -+ "io/ioutil" -+ "os" - "unsafe" - ) - - func loadSystemRoots() (*CertPool, error) { - roots := NewCertPool() -+ if file := os.Getenv("NIX_SSL_CERT_FILE"); file != "" { -+ data, err := ioutil.ReadFile(file) -+ if err == nil { -+ roots.AppendCertsFromPEM(data) -+ return roots, nil -+ } -+ } - - var data C.CFDataRef = nil - err := C.FetchPEMRoots(&data) -diff --git a/src/crypto/x509/root_darwin.go b/src/crypto/x509/root_darwin.go -index 59b303d..d4a34ac 100644 ---- a/src/crypto/x509/root_darwin.go -+++ b/src/crypto/x509/root_darwin.go -@@ -28,16 +28,25 @@ func (c *Certificate) systemVerify(opts *VerifyOptions) (chains [][]*Certificate - // The linker will not include these unused functions in binaries built with cgo enabled. - - func execSecurityRoots() (*CertPool, error) { -+ var ( -+ mu sync.Mutex -+ roots = NewCertPool() -+ ) -+ -+ if file := os.Getenv("NIX_SSL_CERT_FILE"); file != "" { -+ data, err := ioutil.ReadFile(file) -+ if err == nil { -+ roots.AppendCertsFromPEM(data) -+ return roots, nil -+ } -+ } -+ - cmd := exec.Command("/usr/bin/security", "find-certificate", "-a", "-p", "/System/Library/Keychains/SystemRootCertificates.keychain") - data, err := cmd.Output() - if err != nil { - return nil, err - } - -- var ( -- mu sync.Mutex -- roots = NewCertPool() -- ) - add := func(cert *Certificate) { - mu.Lock() - defer mu.Unlock() -diff --git a/src/crypto/x509/root_unix.go b/src/crypto/x509/root_unix.go -index 7bcb3d6..3986e1a 100644 ---- a/src/crypto/x509/root_unix.go -+++ b/src/crypto/x509/root_unix.go -@@ -24,6 +24,14 @@ func (c *Certificate) systemVerify(opts *VerifyOptions) (chains [][]*Certificate - - func loadSystemRoots() (*CertPool, error) { - roots := NewCertPool() -+ if file := os.Getenv("NIX_SSL_CERT_FILE"); file != "" { -+ data, err := ioutil.ReadFile(file) -+ if err == nil { -+ roots.AppendCertsFromPEM(data) -+ return roots, nil -+ } -+ } -+ - var firstErr error - for _, file := range certFiles { - data, err := ioutil.ReadFile(file) diff --git a/pkgs/development/compilers/go/ssl-cert-file-1.8.patch b/pkgs/development/compilers/go/ssl-cert-file.patch index 052655eed52..052655eed52 100644 --- a/pkgs/development/compilers/go/ssl-cert-file-1.8.patch +++ b/pkgs/development/compilers/go/ssl-cert-file.patch diff --git a/pkgs/development/compilers/halvm/2.4.0.nix b/pkgs/development/compilers/halvm/2.4.0.nix index 740752e1584..5b241b31ee3 100644 --- a/pkgs/development/compilers/halvm/2.4.0.nix +++ b/pkgs/development/compilers/halvm/2.4.0.nix @@ -32,7 +32,10 @@ stdenv.mkDerivation rec { patchShebangs . ''; hardeningDisable = ["all"]; - postInstall = "$out/bin/halvm-ghc-pkg recache"; + postInstall = '' + patchShebangs $out/bin + $out/bin/halvm-ghc-pkg recache + ''; passthru = { inherit bootPkgs; cross.config = "halvm"; @@ -43,8 +46,8 @@ stdenv.mkDerivation rec { meta = { homepage = "http://github.com/GaloisInc/HaLVM"; description = "The Haskell Lightweight Virtual Machine (HaLVM): GHC running on Xen"; + platforms = ["x86_64-linux"]; # other platforms don't have Xen maintainers = with stdenv.lib.maintainers; [ dmjio ]; - inherit (bootPkgs.ghc.meta) license platforms; - broken = true; # http://hydra.nixos.org/build/51814615 + inherit (bootPkgs.ghc.meta) license; }; } diff --git a/pkgs/development/compilers/haxe/default.nix b/pkgs/development/compilers/haxe/default.nix index a4077408ef0..684c6d25daa 100644 --- a/pkgs/development/compilers/haxe/default.nix +++ b/pkgs/development/compilers/haxe/default.nix @@ -1,25 +1,23 @@ -{ stdenv, fetchgit, ocaml, zlib, neko, camlp4 }: +{ stdenv, fetchgit, ocaml, zlib, pcre, neko, camlp4 }: stdenv.mkDerivation { - name = "haxe-3.2.1"; + name = "haxe-3.4.2"; - buildInputs = [ocaml zlib neko camlp4]; + buildInputs = [ocaml zlib pcre neko camlp4]; src = fetchgit { url = "https://github.com/HaxeFoundation/haxe.git"; - sha256 = "1x9ay5a2llq46fww3k07jxx8h1vfpyxb522snc6702a050ki5vz3"; + sha256 = "1m5fp183agqv8h3ynhxw4kndkpq2d6arysmirv3zl3vz5crmpwqd"; fetchSubmodules = true; - # Tag 3.2.1 - rev = "deab4424399b520750671e51e5f5c2684e942c17"; + # Tag 3.4.2 + rev = "890f8c70cf23ce6f9fe0fdd0ee514a9699433ca7"; }; prePatch = '' - sed -i -e 's|com.class_path <- \[|&"'"$out/lib/haxe/std/"'";|' main.ml + sed -i -e 's|"/usr/lib/haxe/std/";|"'"$out/lib/haxe/std/"'";\n&|g' src/main.ml ''; - patches = [ ./haxelib-nix.patch ]; - buildFlags = [ "all" "tools" ]; installPhase = '' @@ -34,7 +32,7 @@ stdenv.mkDerivation { meta = with stdenv.lib; { description = "Programming language targeting JavaScript, Flash, NekoVM, PHP, C++"; - homepage = http://haxe.org; + homepage = https://haxe.org; license = with licenses; [ gpl2 bsd2 /*?*/ ]; # -> docs/license.txt maintainers = [ maintainers.marcweber ]; platforms = platforms.linux ++ platforms.darwin; diff --git a/pkgs/development/compilers/haxe/haxelib-nix.patch b/pkgs/development/compilers/haxe/haxelib-nix.patch deleted file mode 100644 index ed370e8efd1..00000000000 --- a/pkgs/development/compilers/haxe/haxelib-nix.patch +++ /dev/null @@ -1,128 +0,0 @@ -diff --git a/src/tools/haxelib/Main.hx b/src/tools/haxelib/Main.hx -index dc18815..def5231 100644 ---- a/extra/haxelib_src/src/tools/haxelib/Main.hx -+++ b/extra/haxelib_src/src/tools/haxelib/Main.hx -@@ -1301,21 +1301,26 @@ class Main { - } - - function checkRec( prj : String, version : String, l : List<{ project : String, version : String, info : Infos }> ) { -- var pdir = getRepository() + Data.safe(prj); -- if( !FileSystem.exists(pdir) ) -- throw "Library "+prj+" is not installed : run 'haxelib install "+prj+"'"; -- var version = if( version != null ) version else getCurrent(pdir); -- var vdir = pdir + "/" + Data.safe(version); -- if( vdir.endsWith("dev") ) -- vdir = getDev(pdir); -- if( !FileSystem.exists(vdir) ) -- throw "Library "+prj+" version "+version+" is not installed"; -- for( p in l ) -- if( p.project == prj ) { -- if( p.version == version ) -- return; -- throw "Library "+prj+" has two version included "+version+" and "+p.version; -- } -+ var vdir = this.getNixLib(prj); -+ if (vdir == null) { -+ var pdir = getRepository() + Data.safe(prj); -+ if( !FileSystem.exists(pdir) ) -+ throw "Library "+prj+" is not installed : run 'haxelib install "+prj+"'"; -+ var version = if( version != null ) version else getCurrent(pdir); -+ var vdir = pdir + "/" + Data.safe(version); -+ if( vdir.endsWith("dev") ) -+ vdir = getDev(pdir); -+ if( !FileSystem.exists(vdir) ) -+ throw "Library "+prj+" version "+version+" is not installed"; -+ for( p in l ) -+ if( p.project == prj ) { -+ if( p.version == version ) -+ return; -+ throw "Library "+prj+" has two version included "+version+" and "+p.version; -+ } -+ } else { -+ version = null; -+ } - var json = try File.getContent(vdir+"/"+Data.JSON) catch( e : Dynamic ) null; - var inf = Data.readData(json,false); - l.add({ project : prj, version : version, info: inf }); -@@ -1330,15 +1335,21 @@ class Main { - var a = args[argcur++].split(":"); - checkRec(a[0],a[1],list); - } -- var rep = getRepository(); - for( d in list ) { -- var pdir = Data.safe(d.project)+"/"+Data.safe(d.version)+"/"; -- var dir = rep + pdir; -- try { -- dir = getDev(rep+Data.safe(d.project)); -+ var dir = this.getNixLib(d.project); -+ var pdir = Data.safe(d.project)+"/"; -+ if (dir == null) { -+ var rep = getRepository(); -+ pdir += Data.safe(d.version)+"/"; -+ dir = rep + pdir; -+ try { -+ dir = getDev(rep+Data.safe(d.project)); -+ dir = Path.addTrailingSlash(dir); -+ pdir = dir; -+ } catch( e : Dynamic ) {} -+ } else { - dir = Path.addTrailingSlash(dir); -- pdir = dir; -- } catch( e : Dynamic ) {} -+ } - var ndir = dir + "ndll"; - if( FileSystem.exists(ndir) ) { - var sysdir = ndir+"/"+Sys.systemName(); -@@ -1491,23 +1502,43 @@ class Main { - ); - } - -+ function getNixLib(project:String):Null<String> -+ { -+ var hlibPath = Sys.getEnv("HAXELIB_PATH"); -+ if (hlibPath != null) { -+ for (libDir in hlibPath.split(":")) { -+ var fullpath = libDir; -+ fullpath += libDir.substr(-1, 1) == "/" ? "" : "/"; -+ fullpath += Data.safe(project); -+ if (FileSystem.exists(fullpath)) -+ return fullpath; -+ } -+ } -+ return null; -+ } - - function run() { -- var rep = getRepository(); - var project = param("Library"); - var temp = project.split(":"); - project = temp[0]; -- var pdir = rep + Data.safe(project); -- if( !FileSystem.exists(pdir) ) -- throw "Library "+project+" is not installed"; -- pdir += "/"; -- var version = temp[1] != null ? temp[1] : getCurrent(pdir); -- var dev = try getDev(pdir) catch ( e : Dynamic ) null; -- var vdir = dev != null ? dev : pdir + Data.safe(version); - - args.push(cli.cwd); -+ -+ var vdir = this.getNixLib(project); -+ if (vdir == null) { -+ var rep = getRepository(); -+ var pdir = rep + Data.safe(project); -+ if( !FileSystem.exists(pdir) ) -+ throw "Library "+project+" is not installed"; -+ pdir += "/"; -+ var version = temp[1] != null ? temp[1] : getCurrent(pdir); -+ var dev = try getDev(pdir) catch ( e : Dynamic ) null; -+ vdir = dev!=null ? dev : pdir + Data.safe(version); -+ var rdir = vdir + "/run.n"; -+ if( !FileSystem.exists(rdir) ) -+ throw "Library "+project+" version "+version+" does not have a run script"; -+ } - cli.cwd = vdir; -- - var callArgs = - switch try [Data.readData(File.getContent(vdir + '/haxelib.json'), false), null] catch (e:Dynamic) [null, e] { - case [null, e]: diff --git a/pkgs/development/compilers/julia/0.5.nix b/pkgs/development/compilers/julia/0.5.nix index 32d98b1ce13..1ee4dea51e3 100644 --- a/pkgs/development/compilers/julia/0.5.nix +++ b/pkgs/development/compilers/julia/0.5.nix @@ -54,12 +54,12 @@ in stdenv.mkDerivation rec { pname = "julia"; - version = "0.5.0"; + version = "0.5.1"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/JuliaLang/${pname}/releases/download/v${version}/${name}.tar.gz"; - sha256 = "0bhickil88lalp9jdj1kmf4is70zinhx8ha9rng0g3z50r4a2qmv"; + sha256 = "1a9m7hzzrwk71gvwwrd1p45s64yid61i41n95gm5pzbry6p9fpl0"; }; prePatch = '' mkdir deps/srccache diff --git a/pkgs/development/compilers/kotlin/default.nix b/pkgs/development/compilers/kotlin/default.nix index 508ac254f0a..ca788a57c7c 100644 --- a/pkgs/development/compilers/kotlin/default.nix +++ b/pkgs/development/compilers/kotlin/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, makeWrapper, jre, unzip }: stdenv.mkDerivation rec { - version = "1.1.1"; + version = "1.1.2"; name = "kotlin-${version}"; src = fetchurl { url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip"; - sha256 = "1c96l1bkll0l8c82cfzmph0z38f96r3x68zmggq4s8hhdqgwk8mc"; + sha256 = "0kngyv5qjjpd93i1b8gn1vw6r8p52lfjrqa2f13nf06v9aqk0vfb"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/compilers/llvm/4/default.nix b/pkgs/development/compilers/llvm/4/default.nix index 4be621adb5c..15918f9c1eb 100644 --- a/pkgs/development/compilers/llvm/4/default.nix +++ b/pkgs/development/compilers/llvm/4/default.nix @@ -24,6 +24,8 @@ let clang = wrapCC self.clang-unwrapped; + openmp = callPackage ./openmp.nix {}; + libcxxClang = ccWrapperFun { cc = self.clang-unwrapped; isClang = true; diff --git a/pkgs/development/compilers/llvm/4/openmp.nix b/pkgs/development/compilers/llvm/4/openmp.nix new file mode 100644 index 00000000000..c8ba770e241 --- /dev/null +++ b/pkgs/development/compilers/llvm/4/openmp.nix @@ -0,0 +1,25 @@ +{ stdenv +, fetch +, cmake +, zlib +, llvm +, perl +, version +}: + +stdenv.mkDerivation { + name = "openmp-${version}"; + + src = fetch "openmp" "09kf41zgv551fnv628kqhlwgqkd2bkiwii9gqi6q12djgdddhmfv"; + + buildInputs = [ cmake llvm perl ]; + + enableParallelBuilding = true; + + meta = { + description = "Components required to build an executable OpenMP program"; + homepage = http://openmp.llvm.org/; + license = stdenv.lib.licenses.mit; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/compilers/mono/4.6.nix b/pkgs/development/compilers/mono/4.6.nix index 03ccd776c60..283c34efb32 100644 --- a/pkgs/development/compilers/mono/4.6.nix +++ b/pkgs/development/compilers/mono/4.6.nix @@ -2,6 +2,6 @@ callPackage ./generic.nix (rec { inherit Foundation libobjc; - version = "4.6.0.182"; - sha256 = "1sajwl7fqhkcmh697qqjj4z6amzkay7xf7npsvpm10gm071s5qi6"; + version = "4.6.2.16"; + sha256 = "190f7kcrm1y5x61s1xwdmjnwc3czsg50s3mml4xmix7byh3x2rc9"; }) diff --git a/pkgs/development/compilers/ponyc/default.nix b/pkgs/development/compilers/ponyc/default.nix index 5655cf61a0b..6b7f87b1e95 100644 --- a/pkgs/development/compilers/ponyc/default.nix +++ b/pkgs/development/compilers/ponyc/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation ( rec { name = "ponyc-${version}"; - version = "0.13.0"; + version = "0.14.0"; src = fetchFromGitHub { owner = "ponylang"; repo = "ponyc"; rev = version; - sha256 = "1agb7aiii7pl8zsh3h0lfzghmm1ajj15gx1j48xjyvplxixdgn9j"; + sha256 = "0zzr3mmjp7010d3jfly6lbwaib546praml97kgj92yixahnwz533"; }; buildInputs = [ llvm makeWrapper which ]; diff --git a/pkgs/development/compilers/reason/default.nix b/pkgs/development/compilers/reason/default.nix new file mode 100644 index 00000000000..7bd4750551f --- /dev/null +++ b/pkgs/development/compilers/reason/default.nix @@ -0,0 +1,57 @@ +{ stdenv, makeWrapper, buildOcaml, fetchFromGitHub, + ocaml, opam, topkg, menhir, merlin_extend, ppx_tools_versioned, utop }: + +let + version = "1.13.4"; + src = fetchFromGitHub { + owner = "facebook"; + repo = "reason"; + rev = version; + sha256 = "03r2ciikgwaq1dkzgzc8n7h7y0q95ajh6n9bb2n5bpgfhwkr1wqi"; + }; + meta = with stdenv.lib; { + homepage = https://facebook.github.io/reason/; + description = "Facebook's friendly syntax to OCaml"; + license = licenses.bsd3; + maintainers = [ maintainers.volth ]; + }; + + reason-parser = buildOcaml { + name = "reason-parser"; + inherit version src meta; + sourceRoot = "reason-${version}-src/reason-parser"; + + minimumSupportedOcamlVersion = "4.02"; + + propagatedBuildInputs = [ menhir merlin_extend ppx_tools_versioned ]; + buildInputs = [ opam topkg ]; + + createFindlibDestdir = true; + + inherit (topkg) installPhase; + }; +in +buildOcaml { + name = "reason"; + inherit version src meta; + + buildInputs = [ makeWrapper opam topkg reason-parser utop ]; + + buildFlags = [ "build" ]; # do not "make tests" before reason lib is installed + + createFindlibDestdir = true; + + postPatch = '' + substituteInPlace src/reasonbuild.ml --replace "refmt --print binary" "$out/bin/refmt --print binary" + ''; + + installPhase = '' + ${topkg.installPhase} + + wrapProgram $out/bin/reup \ + --prefix PATH : "${opam}/bin" + wrapProgram $out/bin/rtop \ + --prefix PATH : "${utop}/bin" \ + --set OCAMLPATH $out/lib/ocaml/${ocaml.version}/site-lib:$OCAMLPATH + ''; +} diff --git a/pkgs/development/compilers/rust/rustc.nix b/pkgs/development/compilers/rust/rustc.nix index f2fe7fbca7a..a693afb8b59 100644 --- a/pkgs/development/compilers/rust/rustc.nix +++ b/pkgs/development/compilers/rust/rustc.nix @@ -153,6 +153,6 @@ stdenv.mkDerivation { description = "A safe, concurrent, practical language"; maintainers = with maintainers; [ madjar cstrahan wizeman globin havvy wkennington retrry ]; license = [ licenses.mit licenses.asl20 ]; - platforms = subtractLists platforms.i686 (platforms.linux ++ platforms.darwin); + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix index a50c71b6209..dcd110954c1 100644 --- a/pkgs/development/compilers/sbcl/default.nix +++ b/pkgs/development/compilers/sbcl/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, writeText, sbclBootstrap , sbclBootstrapHost ? "${sbclBootstrap}/bin/sbcl --disable-debugger --no-userinit --no-sysinit" -, threadSupport ? (stdenv.isi686 || stdenv.isx86_64) +, threadSupport ? (stdenv.isi686 || stdenv.isx86_64 || "aarch64-linux" == stdenv.system) # Meant for sbcl used for creating binaries portable to non-NixOS via save-lisp-and-die. # Note that the created binaries still need `patchelf --set-interpreter ...` # to get rid of ${glibc} dependency. @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { name = "sbcl-${version}"; - version = "1.3.16"; + version = "1.3.17"; src = fetchurl { url = "mirror://sourceforge/project/sbcl/sbcl/${version}/${name}-source.tar.bz2"; - sha256 = "0qw8kcn66sr1k7ilm6i66dk3ybym722ccxa4xi8w7bkhgc0ripdp"; + sha256 = "1bqd39cqcv129zxvp3w3z1x46m9g9nmgslnlrvcsbqwd69vgbfcl"; }; patchPhase = '' diff --git a/pkgs/development/compilers/souper/default.nix b/pkgs/development/compilers/souper/default.nix index 6ea135ea990..327139ce045 100644 --- a/pkgs/development/compilers/souper/default.nix +++ b/pkgs/development/compilers/souper/default.nix @@ -9,14 +9,15 @@ let rev = "57cd3d43056b029d9da3c6b3c666c4153554c04f"; sha256 = "197wb7nbirlfpx2jr3afpjjhcj7slc4dxxi02j3kmazz9kcqaygz"; }; -in stdenv.mkDerivation { - name = "souper-unstable-2017-03-07"; +in stdenv.mkDerivation rec { + name = "souper-unstable-${version}"; + version = "2017-03-23"; src = fetchFromGitHub { owner = "google"; repo = "souper"; - rev = "5faed54ddc4a0e0e12647a0eac1da455a1067a47"; - sha256 = "1v8ml94ryw5wdls9syvicx4sc9l34yaq8r7cf7is6x7y1q677rps"; + rev = "cf2911d2eb1e7c8ab465df5a722fa5cdac06e6fc"; + sha256 = "1kg08a1af4di729pn1pip2lzqzlvjign6av95214f5rr3cq2q0cl"; }; nativeBuildInputs = [ diff --git a/pkgs/development/compilers/swift/default.nix b/pkgs/development/compilers/swift/default.nix index 9764ede7281..4b918c9e32a 100644 --- a/pkgs/development/compilers/swift/default.nix +++ b/pkgs/development/compilers/swift/default.nix @@ -34,7 +34,7 @@ }: let - v_major = "3.1"; + v_major = "3.1.1"; version = "${v_major}-RELEASE"; version_friendly = "${v_major}"; @@ -52,11 +52,11 @@ sources = { # For more inforation, see: https://github.com/apple/swift/pull/3594#issuecomment-234169759 clang = fetch { repo = "swift-clang"; - sha256 = "0820mx1ghfnk4p5595r1f313y1699jwi61zghfbwak5wgwgy7n4x"; + sha256 = "1gmdgr8jph87nya8cgdl7iwrggbji2sag996m27hkbszw4nxy8sd"; }; llvm = fetch { repo = "swift-llvm"; - sha256 = "0zb1zi77b2xdz5szlz2m3j3d92dc0q00dv8py2s6iaq3k435i3sq"; + sha256 = "0nwd7cp6mbj7f6a2rx8123n7ygs8406hsx7hp7ybagww6v75bwzi"; }; compilerrt = fetch { repo = "swift-compiler-rt"; @@ -76,7 +76,7 @@ sources = { }; pm = fetch { repo = "swift-package-manager"; - sha256 = "05zijald08z4jbppjawlc0h9n0i4dvn6jnhq0i5b9qq55l7a1lrk"; + sha256 = "1ayy5vk3mjk354pg9bf68wvnaj3jymx23w0qnlw1jxz256ff8fwi"; }; xctest = fetch { repo = "swift-corelibs-xctest"; @@ -84,16 +84,16 @@ sources = { }; foundation = fetch { repo = "swift-corelibs-foundation"; - sha256 = "0d34clr7n0kfy0l94hmgg1cailg3bml0qzlhy8wh75hrrv3n4g1v"; + sha256 = "1d1ldk7ckqn4mhmdhsx2zrmsd6jfxzgdywn2pki7limk979hcwjc"; }; libdispatch = fetch { repo = "swift-corelibs-libdispatch"; - sha256 = "1rka7ijkdk4ybdvyk3map5mc1fm79v848v9nhpfq75m5i63r61bh"; + sha256 = "0ckjg41fjak06i532azhryckjq64fkxzsal4svf5v4s8n9mkq2sg"; fetchSubmodules = true; }; swift = fetch { repo = "swift"; - sha256 = "172q84z70z9gpwahmlcifihldrvc3cafy9ajbz4wi5f6ncw7wbmb"; + sha256 = "0879jlv37lmxc1apzi53xn033y72548i86r7fzwr0g52124q5gry"; }; }; diff --git a/pkgs/development/coq-modules/QuickChick/default.nix b/pkgs/development/coq-modules/QuickChick/default.nix index db364ffb1af..8fc12e5759d 100644 --- a/pkgs/development/coq-modules/QuickChick/default.nix +++ b/pkgs/development/coq-modules/QuickChick/default.nix @@ -1,16 +1,16 @@ {stdenv, fetchgit, coq, coqPackages}: -let revision = "b73a594af5460567dc233b2f2e7b0f781ae0490d"; in +let revision = "04785ee692036e7ba9f4c4e380b1995128a97bf8"; in stdenv.mkDerivation rec { name = "coq-QuickChick-${coq.coq-version}-${version}"; - version = "20150605-${builtins.substring 0 7 revision}"; + version = "20170422-${builtins.substring 0 7 revision}"; src = fetchgit { url = git://github.com/QuickChick/QuickChick.git; rev = revision; - sha256 = "1prlihkgi2yvgzd62x80fsnxp5w1n0wyk7zrd6zwa8dbqx9pbr09"; + sha256 = "1x5idk9d9r5mj1w54676a5j92wr1id7c9dmknkpmnh78rgrqzy5j"; }; buildInputs = [ coq.ocaml coq.camlp5 ]; diff --git a/pkgs/development/coq-modules/fiat/HEAD.nix b/pkgs/development/coq-modules/fiat/HEAD.nix index a92c14bdbff..fe9f3307b7a 100644 --- a/pkgs/development/coq-modules/fiat/HEAD.nix +++ b/pkgs/development/coq-modules/fiat/HEAD.nix @@ -2,8 +2,8 @@ stdenv.mkDerivation rec { - name = "coq-fiat-${coq.coq-version}-${version}"; - version = "20161024"; + name = "coq-fiat-${coq.coq-version}-unstable-${version}"; + version = "2016-10-24"; src = fetchgit { url = "https://github.com/mit-plv/fiat.git"; diff --git a/pkgs/development/go-modules/generic/default.nix b/pkgs/development/go-modules/generic/default.nix index 731196d31a1..b54f07fb004 100644 --- a/pkgs/development/go-modules/generic/default.nix +++ b/pkgs/development/go-modules/generic/default.nix @@ -188,7 +188,7 @@ go.stdenv.mkDerivation ( ''; preFixup = preFixup + '' - find $bin/bin -type f -exec ${removeExpr removeReferences} '{}' + + find $bin/bin -type f -exec ${removeExpr removeReferences} '{}' + || true ''; shellHook = '' diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 9d689d5394a..2caa10a8411 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -66,7 +66,7 @@ self: super: { src = pkgs.fetchgit { url = "git://git-annex.branchable.com/"; rev = "refs/tags/" + drv.version; - sha256 = "0irvzwpwxxdy6qs7jj81r6qk7i1gkkqyaza4wcm0phyyn07yh2sz"; + sha256 = "0i08zxk68kbg6k0d9af97r9nr5vidsy63hx22fdp7c5jp64f967q"; }; }))).override { dbus = if pkgs.stdenv.isLinux then self.dbus else null; @@ -229,6 +229,7 @@ self: super: { pocket-dns = dontCheck super.pocket-dns; postgresql-simple = dontCheck super.postgresql-simple; postgrest = dontCheck super.postgrest; + postgrest-ws = dontCheck super.postgrest-ws; snowball = dontCheck super.snowball; sophia = dontCheck super.sophia; test-sandbox = dontCheck super.test-sandbox; @@ -456,16 +457,6 @@ self: super: { apiary-session = dontCheck super.apiary-session; apiary-websockets = dontCheck super.apiary-websockets; - # See instructions provided by Peti in https://github.com/NixOS/nixpkgs/issues/23036 - purescript = super.purescript.overrideScope (self: super: { - # TODO: Re-evaluate the following overrides after the 0.11 release. - aeson = self.aeson_0_11_3_0; - http-client = self.http-client_0_4_31_2; - http-client-tls = self.http-client-tls_0_2_4_1; - pipes = self.pipes_4_2_0; - websockets = self.websockets_0_9_8_2; - }); - # HsColour: Language/Unlambda.hs: hGetContents: invalid argument (invalid byte sequence) unlambda = dontHyperlinkSource super.unlambda; @@ -504,6 +495,7 @@ self: super: { # Depends on itself for testing doctest-discover = addBuildTool super.doctest-discover (dontCheck super.doctest-discover); + tasty-discover = addBuildTool super.tasty-discover (dontCheck super.tasty-discover); # https://github.com/bos/aeson/issues/253 aeson = dontCheck super.aeson; @@ -693,11 +685,8 @@ self: super: { store = self.store_0_3_1; }); - # The latest Hoogle needs versions not yet in LTS Haskell 7.x. - hoogle = super.hoogle.override { haskell-src-exts = self.haskell-src-exts_1_19_1; }; - - # Needs new version. - haskell-src-exts-simple = super.haskell-src-exts-simple.override { haskell-src-exts = self.haskell-src-exts_1_19_1; }; + # It makes no sense to have intero-nix-shim in Hackage, so we publish it here only. + intero-nix-shim = self.callPackage ../tools/haskell/intero-nix-shim {}; # https://github.com/Philonous/hs-stun/pull/1 # Remove if a version > 0.1.0.1 ever gets released. @@ -868,34 +857,4 @@ self: super: { # https://github.com/danidiaz/tailfile-hinotify/issues/2 tailfile-hinotify = dontCheck super.tailfile-hinotify; -} // (let scope' = self: super: { - haskell-tools-ast = super.haskell-tools-ast_0_6_0_0; - haskell-tools-backend-ghc = super.haskell-tools-backend-ghc_0_6_0_0; - haskell-tools-cli = super.haskell-tools-cli_0_6_0_0; - haskell-tools-daemon = super.haskell-tools-daemon_0_6_0_0; - haskell-tools-debug = super.haskell-tools-debug_0_6_0_0; - haskell-tools-demo = super.haskell-tools-demo_0_6_0_0; - haskell-tools-prettyprint = super.haskell-tools-prettyprint_0_6_0_0; - haskell-tools-refactor = super.haskell-tools-refactor_0_6_0_0; - haskell-tools-rewrite = super.haskell-tools-rewrite_0_6_0_0; - }; - in { - haskell-tools-ast_0_6_0_0 = - super.haskell-tools-ast_0_6_0_0.overrideScope scope'; - haskell-tools-backend-ghc_0_6_0_0 = - super.haskell-tools-backend-ghc_0_6_0_0.overrideScope scope'; - haskell-tools-cli_0_6_0_0 = - dontCheck (super.haskell-tools-cli_0_6_0_0.overrideScope scope'); - haskell-tools-daemon_0_6_0_0 = - dontCheck (super.haskell-tools-daemon_0_6_0_0.overrideScope scope'); - haskell-tools-debug_0_6_0_0 = - super.haskell-tools-debug_0_6_0_0.overrideScope scope'; - haskell-tools-demo_0_6_0_0 = - super.haskell-tools-demo_0_6_0_0.overrideScope scope'; - haskell-tools-prettyprint_0_6_0_0 = - super.haskell-tools-prettyprint_0_6_0_0.overrideScope scope'; - haskell-tools-refactor_0_6_0_0 = - super.haskell-tools-refactor_0_6_0_0.overrideScope scope'; - haskell-tools-rewrite_0_6_0_0 = - super.haskell-tools-rewrite_0_6_0_0.overrideScope scope'; - }) +} diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix index 8eb87279c79..d91d25b8d31 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix @@ -52,4 +52,8 @@ self: super: { # http://hub.darcs.net/dolio/vector-algorithms/issue/9#comment-20170112T145715 vector-algorithms = dontCheck super.vector-algorithms; + # https://github.com/thoughtbot/yesod-auth-oauth2/pull/77 + yesod-auth-oauth2 = doJailbreak super.yesod-auth-oauth2; + + } diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml index 4410e3c4c50..1ace80a48a5 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml @@ -37,7 +37,7 @@ core-packages: - ghcjs-base-0 default-package-overrides: - # LTS Haskell 8.11 + # LTS Haskell 8.13 - abstract-deque ==0.3 - abstract-par ==0.3.3 - AC-Vector ==2.3.2 @@ -47,7 +47,7 @@ default-package-overrides: - acid-state ==0.14.2 - action-permutations ==0.0.0.1 - active ==0.2.0.12 - - ad ==4.3.2.1 + - ad ==4.3.3 - adjunctions ==4.3 - adler32 ==0.1.1.0 - aeson ==1.0.2.1 @@ -167,7 +167,7 @@ default-package-overrides: - app-settings ==0.2.0.11 - appar ==0.1.4 - apportionment ==0.0.0.2 - - arbtt ==0.9.0.12 + - arbtt ==0.9.0.13 - arithmoi ==0.4.3.0 - array-memoize ==0.6.0 - arrow-extras ==0.1.0.1 @@ -189,6 +189,7 @@ default-package-overrides: - attoparsec ==0.13.1.0 - attoparsec-binary ==0.2 - attoparsec-expr ==0.1.1.2 + - attoparsec-iso8601 ==1.0.0.0 - audacity ==0.0.1.1 - authenticate ==1.3.3.2 - authenticate-oauth ==1.6 @@ -222,8 +223,8 @@ default-package-overrides: - bento ==0.1.0 - between ==0.11.0.0 - bibtex ==0.1.0.6 - - bifunctors ==5.4.1 - - bimap ==0.3.2 + - bifunctors ==5.4.2 + - bimap ==0.3.3 - bimap-server ==0.1.0.1 - binary-bits ==0.5 - binary-conduit ==1.2.4.1 @@ -251,7 +252,7 @@ default-package-overrides: - bitcoin-script ==0.11.1 - bitcoin-tx ==0.13.1 - bitcoin-types ==0.9.2 - - bits ==0.5 + - bits ==0.5.1 - bitx-bitcoin ==0.11.0.1 - blake2 ==0.2.0 - blank-canvas ==0.6 @@ -293,7 +294,7 @@ default-package-overrides: - byteable ==0.1.1 - bytedump ==1.0 - byteorder ==1.0.4 - - bytes ==0.15.2 + - bytes ==0.15.3 - byteset ==0.1.1.0 - bytestring-builder ==0.10.8.1.0 - bytestring-conversion ==0.3.1 @@ -319,7 +320,7 @@ default-package-overrides: - camfort ==0.901 - carray ==0.1.6.6 - cartel ==0.18.0.2 - - case-insensitive ==1.2.0.8 + - case-insensitive ==1.2.0.9 - cased ==0.1.0.0 - cases ==0.1.3.2 - casing ==0.1.2.1 @@ -327,7 +328,7 @@ default-package-overrides: - cassava-conduit ==0.3.5.1 - cassava-megaparsec ==0.1.0 - cassette ==0.1.0 - - cayley-client ==0.4.0 + - cayley-client ==0.4.1 - cereal ==0.5.4.0 - cereal-conduit ==0.7.3 - cereal-text ==0.1.0.2 @@ -357,12 +358,12 @@ default-package-overrides: - cipher-rc4 ==0.1.4 - circle-packing ==0.1.0.5 - clang-pure ==0.2.0.2 - - clash-ghc ==0.7.1 + - clash-ghc ==0.7.2 - clash-lib ==0.7.1 - - clash-prelude ==0.11.1 - - clash-systemverilog ==0.7.1 - - clash-verilog ==0.7.1 - - clash-vhdl ==0.7.1 + - clash-prelude ==0.11.2 + - clash-systemverilog ==0.7.2 + - clash-verilog ==0.7.2 + - clash-vhdl ==0.7.2 - classy-prelude ==1.2.0.1 - classy-prelude-conduit ==1.2.0 - classy-prelude-yesod ==1.2.0 @@ -391,7 +392,7 @@ default-package-overrides: - colour ==2.3.3 - comfort-graph ==0.0.2 - commutative ==0.0.1.4 - - comonad ==5 + - comonad ==5.0.1 - comonad-transformers ==4.0 - comonads-fd ==4.0 - compactmap ==0.1.4.2 @@ -402,7 +403,7 @@ default-package-overrides: - concurrent-output ==1.7.9 - concurrent-split ==0.0.1 - concurrent-supply ==0.1.8 - - conduit ==1.2.9.1 + - conduit ==1.2.10 - conduit-combinators ==1.1.1 - conduit-connection ==0.1.0.3 - conduit-extra ==1.1.15 @@ -564,7 +565,7 @@ default-package-overrides: - dockerfile ==0.1.0.1 - docopt ==0.7.0.5 - doctemplates ==0.1.0.2 - - doctest ==0.11.1 + - doctest ==0.11.2 - doctest-discover ==0.1.0.7 - dotenv ==0.3.1.0 - dotnet-timespan ==0.0.1.0 @@ -595,11 +596,11 @@ default-package-overrides: - effin ==0.3.0.2 - either ==4.4.1.1 - either-unwrap ==1.1 - - ekg ==0.4.0.12 + - ekg ==0.4.0.13 - ekg-core ==0.1.1.1 - - ekg-json ==0.1.0.4 + - ekg-json ==0.1.0.5 - ekg-statsd ==0.2.1.0 - - ekg-wai ==0.1.0.0 + - ekg-wai ==0.1.0.1 - elerea ==2.9.0 - elm-bridge ==0.4.0 - elm-core-sources ==1.0.0 @@ -616,7 +617,7 @@ default-package-overrides: - enummapset ==0.5.2.1 - enummapset-th ==0.6.1.1 - enumset ==0.0.4 - - envelope ==0.2.1.0 + - envelope ==0.2.2.0 - envparse ==0.4 - envy ==1.3.0.2 - epub-metadata ==4.5 @@ -629,11 +630,11 @@ default-package-overrides: - esqueleto ==2.5.1 - etc ==0.0.0.2 - etcd ==1.0.5 - - ether ==0.4.1.0 + - ether ==0.4.2.0 - euphoria ==0.8.0.0 - event ==0.1.4 - event-list ==0.1.1.3 - - eventstore ==0.14.0.1 + - eventstore ==0.14.0.2 - exact-combinatorics ==0.2.0.8 - exact-pi ==0.4.1.2 - exception-mtl ==0.4.0.1 @@ -679,7 +680,7 @@ default-package-overrides: - filemanip ==0.3.6.3 - fingertree ==0.1.1.0 - fingertree-psqueue ==0.3 - - finite-typelits ==0.1.1.0 + - finite-typelits ==0.1.2.0 - fixed ==0.2.1.1 - fixed-length ==0.2 - fixed-vector ==0.9.0.0 @@ -698,20 +699,20 @@ default-package-overrides: - fold-debounce-conduit ==0.1.0.5 - foldl ==1.2.4 - foldl-statistics ==0.1.4.2 - - folds ==0.7.1 + - folds ==0.7.3 - FontyFruity ==0.5.3.2 - force-layout ==0.4.0.6 - foreign-store ==0.2 - format-numbers ==0.1.0.0 - formatting ==6.2.4 - fortran-src ==0.1.0.4 - - foundation ==0.0.6 + - foundation ==0.0.8 - Frames ==0.1.9 - free ==4.12.4 - free-vl ==0.1.4 - freenect ==1.2.1 - freer ==0.2.4.1 - - freer-effects ==0.3.0.0 + - freer-effects ==0.3.0.1 - friendly-time ==0.4 - frisby ==0.2 - from-sum ==0.2.1.0 @@ -724,16 +725,16 @@ default-package-overrides: - gd ==3000.7.3 - Genbank ==1.0.3 - general-games ==1.0.5 - - generic-aeson ==0.2.0.8 + - generic-aeson ==0.2.0.9 - generic-deriving ==1.11.2 - generic-random ==0.4.1.0 - generic-xmlpickler ==0.1.0.5 - GenericPretty ==1.2.1 - generics-eot ==0.2.1.1 - - generics-sop ==0.2.4.0 + - generics-sop ==0.2.5.0 - generics-sop-lens ==0.1.2.1 - - geniplate-mirror ==0.7.4 - - getopt-generics ==0.13 + - geniplate-mirror ==0.7.5 + - getopt-generics ==0.13.0.1 - ghc-events ==0.4.4.0 - ghc-exactprint ==0.5.3.0 - ghc-heap-view ==0.5.9 @@ -750,25 +751,25 @@ default-package-overrides: - ghcjs-codemirror ==0.0.0.1 - ghcjs-hplay ==0.3.4.2 - ghcjs-perch ==0.3.3.2 - - gi-atk ==2.0.11 - - gi-cairo ==1.0.11 - - gi-gdk ==3.0.11 - - gi-gdkpixbuf ==2.0.11 - - gi-gio ==2.0.11 - - gi-glib ==2.0.11 - - gi-gobject ==2.0.11 - - gi-gtk ==3.0.13 - - gi-javascriptcore ==3.0.11 - - gi-pango ==1.0.12 - - gi-soup ==2.4.11 - - gi-webkit ==3.0.11 + - gi-atk ==2.0.12 + - gi-cairo ==1.0.12 + - gi-gdk ==3.0.12 + - gi-gdkpixbuf ==2.0.12 + - gi-gio ==2.0.12 + - gi-glib ==2.0.12 + - gi-gobject ==2.0.12 + - gi-gtk ==3.0.14 + - gi-javascriptcore ==3.0.12 + - gi-pango ==1.0.13 + - gi-soup ==2.4.12 + - gi-webkit ==3.0.12 - ginger ==0.3.9.1 - gio ==0.13.3.1 - - gipeda ==0.3.3.1 + - gipeda ==0.3.3.2 - giphy-api ==0.5.2.0 - git ==0.2.0 - github ==0.15.0 - - github-release ==1.0.1 + - github-release ==1.0.2 - github-types ==0.2.1 - github-webhook-handler ==0.0.8 - github-webhook-handler-snap ==0.0.7 @@ -778,7 +779,7 @@ default-package-overrides: - gitrev ==1.2.0 - gitson ==0.5.2 - gl ==0.8.0 - - glabrous ==0.3.1 + - glabrous ==0.3.2 - glaze ==0.2.0.2 - glazier ==0.7.0.0 - glazier-pipes ==0.1.4.0 @@ -789,7 +790,7 @@ default-package-overrides: - gloss ==1.10.2.5 - gloss-rendering ==1.10.3.5 - GLURaw ==2.0.0.3 - - GLUT ==2.7.0.11 + - GLUT ==2.7.0.12 - gnuplot ==0.5.4.1 - gogol ==0.1.1 - gogol-adexchange-buyer ==0.1.1 @@ -899,11 +900,11 @@ default-package-overrides: - graphviz ==2999.18.1.2 - gravatar ==0.8.0 - graylog ==0.1.0.1 - - groom ==0.1.2 + - groom ==0.1.2.1 - groundhog ==0.8 - groundhog-inspector ==0.8 - groundhog-mysql ==0.8 - - groundhog-postgresql ==0.8 + - groundhog-postgresql ==0.8.0.1 - groundhog-sqlite ==0.8 - groundhog-th ==0.8 - grouped-list ==0.2.1.2 @@ -918,7 +919,7 @@ default-package-overrides: - hackage-security ==0.5.2.2 - hackernews ==1.1.1.0 - haddock-library ==1.4.3 - - hailgun ==0.4.1.2 + - hailgun ==0.4.1.3 - hailgun-simple ==0.1.0.0 - hakyll ==4.9.5.1 - half ==0.2.2.3 @@ -941,7 +942,7 @@ default-package-overrides: - hashable-time ==0.2.0.1 - hashmap ==1.3.2 - hashtables ==1.2.1.1 - - haskeline ==0.7.3.1 + - haskeline ==0.7.4.0 - haskell-gi ==0.20.1 - haskell-gi-base ==0.20.2 - haskell-import-graph ==1.0.1 @@ -971,7 +972,7 @@ default-package-overrides: - hasql-transaction ==0.5 - hastache ==0.6.1 - hasty-hamiltonian ==1.3.0 - - HaTeX ==3.17.1.0 + - HaTeX ==3.17.2.0 - hatex-guide ==1.3.1.6 - haxl ==0.5.0.0 - haxl-amazonka ==0.1.1 @@ -986,7 +987,7 @@ default-package-overrides: - HDBC-session ==0.1.1.0 - hdevtools ==0.1.5.0 - heap ==1.0.3 - - heaps ==0.3.3 + - heaps ==0.3.4.1 - hebrew-time ==0.1.1 - hedis ==0.9.8 - here ==1.2.9 @@ -999,6 +1000,7 @@ default-package-overrides: - hflags ==0.4.2 - hformat ==0.1.0.1 - hfsevents ==0.1.6 + - hgal ==2.0.0.2 - hid ==0.2.2 - hidapi ==0.1.4 - hidden-char ==0.1.0.0 @@ -1009,13 +1011,13 @@ default-package-overrides: - highlighting-kate ==0.6.4 - hinotify ==0.3.9 - hint ==0.6.0 - - hip ==1.5.2.0 + - hip ==1.5.3.0 - histogram-fill ==0.8.5.0 - hit ==0.6.3 - hjpath ==3.0.1 - hjsmin ==0.2.0.2 - hjson ==1.3.2 - - hjsonpointer ==1.1.0.2 + - hjsonpointer ==1.1.1 - hjsonschema ==1.5.0.1 - hlibgit2 ==0.18.0.16 - hlibsass ==0.1.6.0 @@ -1038,7 +1040,7 @@ default-package-overrides: - hostname ==1.0 - hostname-validate ==1.0.0 - hourglass ==0.2.10 - - hpc-coveralls ==1.0.8 + - hpc-coveralls ==1.0.9 - hPDB ==1.2.0.9 - hPDB-examples ==1.2.0.7 - HPDF ==1.4.10 @@ -1065,10 +1067,10 @@ default-package-overrides: - hsinstall ==1.5 - hslogger ==1.2.10 - hslua ==0.4.1 - - hslua-aeson ==0.1.0.3 + - hslua-aeson ==0.1.0.4 - hsndfile ==0.8.0 - hsndfile-vector ==0.5.2 - - HsOpenSSL ==0.11.4.6 + - HsOpenSSL ==0.11.4.8 - HsOpenSSL-x509-system ==0.1.0.3 - hsp ==0.10.0 - hspec ==2.4.3 @@ -1101,7 +1103,7 @@ default-package-overrides: - html-email-validate ==0.2.0.0 - htoml ==1.0.0.3 - HTTP ==4000.3.6 - - http-api-data ==0.3.6 + - http-api-data ==0.3.7 - http-client ==0.5.6.1 - http-client-openssl ==0.2.0.5 - http-client-tls ==0.3.4.1 @@ -1110,7 +1112,7 @@ default-package-overrides: - http-date ==0.0.6.1 - http-link-header ==1.0.3 - http-media ==0.6.4 - - http-reverse-proxy ==0.4.3.3 + - http-reverse-proxy ==0.4.4 - http-streams ==0.8.4.0 - http-types ==0.9.1 - http2 ==1.6.3 @@ -1180,7 +1182,7 @@ default-package-overrides: - IntervalMap ==0.5.2.0 - intervals ==0.7.2 - intro ==0.1.0.10 - - invariant ==0.4 + - invariant ==0.4.2 - invertible ==0.2.0.2 - io-choice ==0.0.6 - io-machine ==0.2.0.0 @@ -1214,8 +1216,8 @@ default-package-overrides: - jmacro-rpc-happstack ==0.3.2 - jmacro-rpc-snap ==0.3 - jni ==0.2.3 - - jose ==0.5.0.2 - - jose-jwt ==0.7.5 + - jose ==0.5.0.3 + - jose-jwt ==0.7.6 - js-flot ==0.8.3 - js-jquery ==3.1.1 - json ==0.9.1 @@ -1234,7 +1236,7 @@ default-package-overrides: - kansas-comet ==0.4 - katip ==0.3.1.4 - katip-elasticsearch ==0.3.0.2 - - kawhi ==0.2.1 + - kawhi ==0.2.3 - kdt ==0.2.4 - keter ==1.4.3.2 - keycode ==0.2.2 @@ -1269,8 +1271,8 @@ default-package-overrides: - lca ==0.3 - leapseconds-announced ==2017 - lens ==4.15.1 - - lens-action ==0.2.0.2 - - lens-aeson ==1.0.0.5 + - lens-action ==0.2.1 + - lens-aeson ==1.0.1 - lens-datetime ==0.3 - lens-family ==1.2.1 - lens-family-core ==1.2.1 @@ -1295,7 +1297,7 @@ default-package-overrides: - lifted-async ==0.9.1.1 - lifted-base ==0.2.3.10 - line ==2.2.0 - - linear ==1.20.5 + - linear ==1.20.6 - linear-accelerate ==0.2 - linked-list-with-iterator ==0.1.1.0 - linux-file-extents ==0.2.0.0 @@ -1324,7 +1326,7 @@ default-package-overrides: - lucid ==2.9.8.1 - lucid-svg ==0.7.0.0 - lzma-conduit ==1.1.3.1 - - machines ==0.6.1 + - machines ==0.6.2 - machines-binary ==0.3.0.3 - machines-directory ==0.2.1.0 - machines-io ==0.2.0.13 @@ -1334,13 +1336,13 @@ default-package-overrides: - mainland-pretty ==0.4.1.4 - makefile ==0.1.1.0 - managed ==1.0.5 - - mandrill ==0.5.3.1 + - mandrill ==0.5.3.2 - markdown ==0.1.16 - markdown-unlit ==0.4.0 - markov-chain ==0.0.3.4 - markup ==3.1.0 - marvin ==0.2.3 - - marvin-interpolate ==1.1 + - marvin-interpolate ==1.1.1 - math-functions ==0.2.1.0 - mathexpr ==0.3.0.0 - matplotlib ==0.4.3 @@ -1351,12 +1353,12 @@ default-package-overrides: - mbox ==0.3.3 - mbox-utility ==0.0 - mcmc-types ==1.0.3 - - mediabus ==0.3.2.1 + - mediabus ==0.3.3.0 - mediabus-rtp ==0.3.2.1 - median-stream ==0.7.0.0 - mega-sdist ==0.3.0.2 - megaparsec ==5.2.0 - - memory ==0.14.3 + - memory ==0.14.5 - MemoTrie ==0.6.7 - mersenne-random ==1.0.0.1 - mersenne-random-pure64 ==0.2.2.0 @@ -1368,7 +1370,7 @@ default-package-overrides: - microbench ==0.1 - microformats2-parser ==1.0.1.6 - microlens ==0.4.8.0 - - microlens-aeson ==2.2.0 + - microlens-aeson ==2.2.0.1 - microlens-contra ==0.1.0.1 - microlens-ghc ==0.4.8.0 - microlens-mtl ==0.1.10.0 @@ -1396,7 +1398,7 @@ default-package-overrides: - monad-extras ==0.6.0 - monad-http ==0.1.0.0 - monad-journal ==0.7.2 - - monad-logger ==0.3.22 + - monad-logger ==0.3.23 - monad-logger-json ==0.1.0.0 - monad-logger-prefix ==0.1.6 - monad-logger-syslog ==0.1.3.0 @@ -1445,7 +1447,7 @@ default-package-overrides: - mustache ==2.1.3 - mutable-containers ==0.3.3 - mwc-probability ==1.3.0 - - mwc-random ==0.13.5.0 + - mwc-random ==0.13.6.0 - mwc-random-monad ==0.7.3.1 - mysql ==0.1.4 - mysql-haskell ==0.8.0.0 @@ -1508,7 +1510,7 @@ default-package-overrides: - oanda-rest-api ==0.3.0.0 - objective ==1.1.1 - ObjectName ==1.1.0.1 - - octane ==0.18.2 + - octane ==0.18.3 - Octree ==0.5.4.3 - oeis ==0.3.9 - ofx ==0.4.2.0 @@ -1523,7 +1525,7 @@ default-package-overrides: - open-browser ==0.2.1.0 - open-witness ==0.4 - OpenAL ==1.7.0.4 - - OpenGL ==3.0.1.0 + - OpenGL ==3.0.2.0 - OpenGLRaw ==3.2.4.0 - openpgp-asciiarmor ==0.1 - opensource ==0.1.0.0 @@ -1559,7 +1561,7 @@ default-package-overrides: - parsers ==0.12.4 - partial-handler ==1.0.2 - partial-isomorphisms ==0.2.2 - - patat ==0.5.0.0 + - patat ==0.5.1.2 - path ==0.5.13 - path-extra ==0.0.3 - path-io ==1.2.2 @@ -1593,7 +1595,7 @@ default-package-overrides: - pinboard ==0.9.12.4 - pinch ==0.3.0.2 - pinchot ==0.24.0.0 - - pipes ==4.3.2 + - pipes ==4.3.3 - pipes-attoparsec ==0.5.1.5 - pipes-bytestring ==2.1.4 - pipes-cacophony ==0.4.1 @@ -1665,8 +1667,8 @@ default-package-overrides: - profunctors ==5.2 - project-template ==0.2.0 - projectroot ==0.2.0.1 - - prometheus-client ==0.1.0.1 - - prometheus-metrics-ghc ==0.1.0.1 + - prometheus-client ==0.1.1 + - prometheus-metrics-ghc ==0.1.1 - prompt ==0.1.1.2 - proto-lens ==0.2.0.1 - proto-lens-arbitrary ==0.1.0.2 @@ -1718,7 +1720,7 @@ default-package-overrides: - rank1dynamic ==0.3.3.0 - Rasterific ==0.7.2.1 - rasterific-svg ==0.3.2.1 - - ratel ==0.3.2 + - ratel ==0.3.3 - ratel-wai ==0.2.0 - rattletrap ==2.1.5 - raw-strings-qq ==1.1 @@ -1815,8 +1817,8 @@ default-package-overrides: - sandman ==0.2.0.1 - say ==0.1.0.0 - sbv ==5.14 - - scalpel ==0.5.0 - - scalpel-core ==0.5.0 + - scalpel ==0.5.1 + - scalpel-core ==0.5.1 - scanner ==0.2 - scientific ==0.3.4.12 - scotty ==0.11.0 @@ -1872,7 +1874,7 @@ default-package-overrides: - SHA ==1.6.4.2 - shake ==0.15.11 - shake-language-c ==0.10.1 - - shakespeare ==2.0.12.1 + - shakespeare ==2.0.13 - shell-conduit ==4.5.2 - shelly ==1.6.8.3 - shortcut-links ==0.4.2.0 @@ -1881,7 +1883,7 @@ default-package-overrides: - sibe ==0.2.0.4 - signal ==0.1.0.3 - silently ==1.2.5 - - simple ==0.11.1 + - simple ==0.11.2 - simple-download ==0.0.2 - simple-log ==0.5.1 - simple-reflect ==0.3.2 @@ -1899,7 +1901,7 @@ default-package-overrides: - slug ==0.1.6 - smallcaps ==0.6.0.4 - smallcheck ==1.1.1 - - smoothie ==0.4.2.6 + - smoothie ==0.4.2.7 - smtLib ==1.0.8 - smtp-mail ==0.1.4.6 - snap-blaze ==0.2.1.5 @@ -1942,7 +1944,9 @@ default-package-overrides: - stack-run-auto ==0.1.1.4 - stack-type ==0.1.0.0 - stackage-curator ==0.14.5 - - state-plus ==0.1.2 + - stackage-query ==0.1.0 + - stackage-types ==1.2.0 + - state-plus ==0.1.3 - stateref ==0.3 - statestack ==0.2.0.5 - StateVar ==1.1.0.4 @@ -1993,7 +1997,7 @@ default-package-overrides: - stripe-haskell ==2.2.1 - stripe-http-streams ==2.2.1 - stripe-tests ==2.2.1 - - strive ==3.0.2 + - strive ==3.0.3 - stylish-haskell ==0.7.1.0 - success ==0.2.6 - sundown ==0.6 @@ -2002,7 +2006,7 @@ default-package-overrides: - svg-tree ==0.6.1 - SVGFonts ==1.6.0.1 - swagger ==0.3.0 - - swagger2 ==2.1.3 + - swagger2 ==2.1.4 - syb ==0.6 - syb-with-class ==0.6.1.7 - symbol ==0.2.4 @@ -2052,25 +2056,26 @@ default-package-overrides: - tcp-streams-openssl ==0.6.0.0 - tdigest ==0.1 - tdigest-Chart ==0 - - telegram-api ==0.6.1.0 + - telegram-api ==0.6.1.1 - template ==0.2.0.10 - temporary ==1.2.0.4 - temporary-rc ==1.2.0.3 - termcolor ==0.2.0.0 - terminal-progress-bar ==0.1.1 - terminal-size ==0.3.2.1 - - terminfo ==0.4.0.2 + - terminfo ==0.4.1.0 - test-fixture ==0.5.0.0 - test-framework ==0.8.1.1 - test-framework-hunit ==0.3.0.2 - test-framework-quickcheck2 ==0.3.0.3 - test-framework-smallcheck ==0.2 - test-framework-th ==0.2.4 + - test-invariant ==0.4.5.0 - test-simple ==0.1.9 - testing-feat ==0.4.0.3 - texmath ==0.9.4 - text ==1.2.2.1 - - text-all ==0.3.0.2 + - text-all ==0.3.1.0 - text-binary ==0.2.1.1 - text-conversions ==0.3.0 - text-format ==0.3.1.1 @@ -2091,9 +2096,9 @@ default-package-overrides: - tfp ==1.0.0.2 - th-data-compat ==0.0.2.2 - th-desugar ==1.6 - - th-expand-syns ==0.4.2.0 + - th-expand-syns ==0.4.3.0 - th-extras ==0.0.0.4 - - th-lift ==0.7.6 + - th-lift ==0.7.7 - th-lift-instances ==0.1.11 - th-orphans ==0.13.3 - th-reify-compat ==0.0.1.1 @@ -2103,7 +2108,7 @@ default-package-overrides: - these ==0.7.3 - thread-local-storage ==0.1.1 - threads ==0.5.1.4 - - threepenny-gui ==0.7.0.1 + - threepenny-gui ==0.7.0.2 - threepenny-gui-flexbox ==0.3.0.2 - through-text ==0.1.0.0 - thumbnail-plus ==1.0.5 @@ -2140,11 +2145,11 @@ default-package-overrides: - true-name ==0.1.0.2 - tsv2csv ==0.1.0.2 - ttrie ==0.1.2.1 - - tttool ==1.7.0.1 + - tttool ==1.7.0.2 - tuple ==0.3.0.2 - tuple-th ==0.2.5 - tuples-homogenous-h98 ==0.1.1.0 - - turtle ==1.3.2 + - turtle ==1.3.3 - turtle-options ==0.1.0.4 - twitter-feed ==0.2.0.11 - twitter-types ==0.7.2.2 @@ -2224,7 +2229,7 @@ default-package-overrides: - validate-input ==0.4.0.0 - validation ==0.5.4 - varying ==0.7.0.3 - - vault ==0.3.0.6 + - vault ==0.3.0.7 - vcswrapper ==0.1.5 - vector ==0.11.0.0 - vector-algorithms ==0.7.0.1 @@ -2263,7 +2268,7 @@ default-package-overrides: - wai-middleware-content-type ==0.5.0.1 - wai-middleware-crowd ==0.1.4.2 - wai-middleware-metrics ==0.2.4 - - wai-middleware-prometheus ==0.1.0.1 + - wai-middleware-prometheus ==0.1.1 - wai-middleware-rollbar ==0.3.0 - wai-middleware-static ==0.8.1 - wai-middleware-throttle ==0.2.1.0 @@ -2289,7 +2294,7 @@ default-package-overrides: - web-routes-hsp ==0.24.6.1 - web-routes-th ==0.22.6.1 - web-routes-wai ==0.24.3 - - webdriver ==0.8.4 + - webdriver ==0.8.5 - webdriver-angular ==0.1.11 - webkitgtk3 ==0.14.2.1 - webkitgtk3-javascriptcore ==0.14.2.1 @@ -2297,8 +2302,8 @@ default-package-overrides: - webrtc-vad ==0.1.0.3 - websockets ==0.10.0.0 - websockets-rpc ==0.0.2 - - websockets-snap ==0.10.2.0 - - weigh ==0.0.3 + - websockets-snap ==0.10.2.1 + - weigh ==0.0.4 - wikicfp-scraper ==0.1.0.8 - wild-bind ==0.1.0.3 - wild-bind-indicator ==0.1.0.1 @@ -2329,9 +2334,9 @@ default-package-overrides: - writer-cps-full ==0.1.0.0 - writer-cps-lens ==0.1.0.1 - writer-cps-morph ==0.1.0.2 - - writer-cps-mtl ==0.1.1.3 - - writer-cps-transformers ==0.1.1.2 - - wuss ==1.1.3 + - writer-cps-mtl ==0.1.1.4 + - writer-cps-transformers ==0.1.1.3 + - wuss ==1.1.4 - X11 ==1.8 - X11-xft ==0.3.1 - x509 ==1.6.5 @@ -2367,14 +2372,14 @@ default-package-overrides: - yackage ==0.8.1 - yahoo-finance-api ==0.2.0.1 - yaml ==0.8.22 - - Yampa ==0.10.5 + - Yampa ==0.10.5.1 - YampaSynth ==0.2 - yes-precure5-command ==5.5.3 - yesod ==1.4.5 - yesod-auth ==1.4.17 - yesod-auth-account ==1.4.3 - yesod-auth-basic ==0.1.0.2 - - yesod-auth-hashdb ==1.6.0.1 + - yesod-auth-hashdb ==1.6.1 - yesod-bin ==1.5.2.2 - yesod-core ==1.4.33 - yesod-eventsource ==1.4.1 @@ -2411,10 +2416,10 @@ default-package-overrides: - zero ==0.1.4 - zeromq4-haskell ==0.6.5 - zip ==0.1.10 - - zip-archive ==0.3.0.5 - - zippers ==0.2.2 - - ziptastic-client ==0.3.0.1 - - ziptastic-core ==0.2.0.1 + - zip-archive ==0.3.0.6 + - zippers ==0.2.3 + - ziptastic-client ==0.3.0.2 + - ziptastic-core ==0.2.0.2 - zlib ==0.6.1.2 - zlib-bindings ==0.1.1.5 - zlib-lens ==0.1.2.1 @@ -2453,13 +2458,6 @@ extra-packages: - transformers == 0.4.3.* # the latest version isn't supported by mtl yet - vector < 0.10.10 # newer versions don't work with GHC 6.12.3 - zlib < 0.6 # newer versions break cabal-install - - aeson == 0.11.3.0 # purescript 0.10.7 - - bower-json == 1.0.0.1 # purescript 0.10.7 - - optparse-applicative == 0.13.1.0 # purescript 0.10.7 - - http-client == 0.4.31.2 # purescript 0.10.7 - - http-client-tls == 0.2.4.1 # purescript 0.10.7 - - pipes == 4.2.0 # purescript 0.10.7 - - websockets == 0.9.8.2 # purescript 0.10.7 package-maintainers: peti: @@ -2469,9 +2467,7 @@ package-maintainers: - git-annex - hackage-db - hledger - - hledger-diff - hledger-interest - - hledger-irr - hledger-ui - hledger-web - hopenssl @@ -2517,15 +2513,34 @@ package-maintainers: dont-distribute-packages: # hard restrictions that really belong into meta.platforms + alsa-mixer: [ i686-linux, x86_64-linux ] + alsa-pcm: [ i686-linux, x86_64-linux ] + alsa-seq: [ i686-linux, x86_64-linux ] AWin32Console: [ i686-linux, x86_64-linux, x86_64-darwin ] + bindings-directfb: [ i686-linux, x86_64-linux ] d3d11binding: [ i686-linux, x86_64-linux, x86_64-darwin ] DirectSound: [ i686-linux, x86_64-linux, x86_64-darwin ] dx9base: [ i686-linux, x86_64-linux, x86_64-darwin ] dx9d3d: [ i686-linux, x86_64-linux, x86_64-darwin ] dx9d3dx: [ i686-linux, x86_64-linux, x86_64-darwin ] + freenect: [ i686-linux, x86_64-linux ] + FTGL: [ i686-linux, x86_64-linux ] + gi-ostree: [ i686-linux, x86_64-linux ] + hcwiid: [ i686-linux, x86_64-linux ] hfsevents: [ i686-linux, x86_64-linux ] + HFuse: [ i686-linux, x86_64-linux ] hommage-ds: [ i686-linux, x86_64-linux, x86_64-darwin ] + lio-fs: [ i686-linux, x86_64-linux ] + midi-alsa: [ i686-linux, x86_64-linux ] + pam: [ i686-linux, x86_64-linux ] + PortMidi: [ i686-linux, x86_64-linux ] + Raincat: [ i686-linux, x86_64-linux ] reactivity: [ i686-linux, x86_64-linux, x86_64-darwin ] + rtlsdr: [ i686-linux, x86_64-linux ] + rubberband: [ i686-linux, x86_64-linux ] + sdl2-mixer: [ i686-linux, x86_64-linux ] + sdl2-ttf: [ i686-linux, x86_64-linux ] + tokyotyrant-haskell: [ i686-linux, x86_64-linux ] Win32-console: [ i686-linux, x86_64-linux, x86_64-darwin ] Win32-dhcp-server: [ i686-linux, x86_64-linux, x86_64-darwin ] Win32-errors: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2536,7 +2551,9 @@ dont-distribute-packages: Win32-security: [ i686-linux, x86_64-linux, x86_64-darwin ] Win32-services: [ i686-linux, x86_64-linux, x86_64-darwin ] Win32-services-wrapper: [ i686-linux, x86_64-linux, x86_64-darwin ] + xattr: [ i686-linux, x86_64-linux ] XInput: [ i686-linux, x86_64-linux, x86_64-darwin ] + xmobar: [ i686-linux, x86_64-linux ] # Depens on shine, which is a ghcjs project. shine-varying: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -2580,6 +2597,8 @@ dont-distribute-packages: accelerate-fftw: [ i686-linux, x86_64-linux, x86_64-darwin ] accelerate-fourier: [ i686-linux, x86_64-linux, x86_64-darwin ] accelerate-io: [ i686-linux, x86_64-linux, x86_64-darwin ] + accelerate-llvm: [ i686-linux, x86_64-linux, x86_64-darwin ] + accelerate-llvm-native: [ i686-linux, x86_64-linux, x86_64-darwin ] accelerate-random: [ i686-linux, x86_64-linux, x86_64-darwin ] accelerate-typelits: [ i686-linux, x86_64-linux, x86_64-darwin ] accelerate-utility: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3042,6 +3061,7 @@ dont-distribute-packages: bliplib: [ i686-linux, x86_64-linux, x86_64-darwin ] Blobs: [ i686-linux, x86_64-linux, x86_64-darwin ] blockhash: [ i686-linux, x86_64-linux, x86_64-darwin ] + Blogdown: [ i686-linux, x86_64-linux, x86_64-darwin ] blogination: [ i686-linux, x86_64-linux, x86_64-darwin ] BlogLiterately-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] BlogLiterately: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3221,6 +3241,8 @@ dont-distribute-packages: cctools-workqueue: [ i686-linux, x86_64-linux, x86_64-darwin ] c-dsl: [ i686-linux, x86_64-linux, x86_64-darwin ] cedict: [ i686-linux, x86_64-linux, x86_64-darwin ] + cef3-raw: [ i686-linux, x86_64-linux, x86_64-darwin ] + cef3-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] ceilometer-common: [ i686-linux, x86_64-linux, x86_64-darwin ] cellrenderer-cairo: [ i686-linux, x86_64-linux, x86_64-darwin ] cerberus: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3338,6 +3360,7 @@ dont-distribute-packages: closure: [ i686-linux, x86_64-linux, x86_64-darwin ] cloudfront-signer: [ i686-linux, x86_64-linux, x86_64-darwin ] cloud-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] + cloudi: [ i686-linux, x86_64-linux, x86_64-darwin ] cloudyfs: [ i686-linux, x86_64-linux, x86_64-darwin ] clua: [ i686-linux, x86_64-linux, x86_64-darwin ] cluss: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3377,6 +3400,7 @@ dont-distribute-packages: collections: [ i686-linux, x86_64-linux, x86_64-darwin ] colonnade: [ i686-linux, x86_64-linux, x86_64-darwin ] color-counter: [ i686-linux, x86_64-linux, x86_64-darwin ] + colour-accelerate: [ i686-linux, x86_64-linux, x86_64-darwin ] colour-space: [ i686-linux, x86_64-linux, x86_64-darwin ] coltrane: [ i686-linux, x86_64-linux, x86_64-darwin ] combinat-diagrams: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3387,6 +3411,7 @@ dont-distribute-packages: combobuffer: [ i686-linux, x86_64-linux, x86_64-darwin ] comfort-graph: [ i686-linux, x86_64-linux, x86_64-darwin ] com: [ i686-linux, x86_64-linux, x86_64-darwin ] + comic: [ i686-linux, x86_64-linux, x86_64-darwin ] commander: [ i686-linux, x86_64-linux, x86_64-darwin ] Commando: [ i686-linux, x86_64-linux, x86_64-darwin ] commodities: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -3999,6 +4024,10 @@ dont-distribute-packages: Eternal10Seconds: [ i686-linux, x86_64-linux, x86_64-darwin ] eternal: [ i686-linux, x86_64-linux, x86_64-darwin ] Etherbunny: [ i686-linux, x86_64-linux, x86_64-darwin ] + ethereum-analyzer-cli: [ i686-linux, x86_64-linux, x86_64-darwin ] + ethereum-analyzer-deps: [ i686-linux, x86_64-linux, x86_64-darwin ] + ethereum-analyzer: [ i686-linux, x86_64-linux, x86_64-darwin ] + ethereum-analyzer-webui: [ i686-linux, x86_64-linux, x86_64-darwin ] ethereum-client-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] ethereum-merkle-patricia-db: [ i686-linux, x86_64-linux, x86_64-darwin ] eurofxref: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4095,6 +4124,7 @@ dont-distribute-packages: fficxx: [ i686-linux, x86_64-linux, x86_64-darwin ] ffmpeg-tutorials: [ i686-linux, x86_64-linux, x86_64-darwin ] fibon: [ i686-linux, x86_64-linux, x86_64-darwin ] + ficketed: [ i686-linux, x86_64-linux, x86_64-darwin ] fields: [ i686-linux, x86_64-linux, x86_64-darwin ] FieldTrip: [ i686-linux, x86_64-linux, x86_64-darwin ] fieldwise: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4308,6 +4338,7 @@ dont-distribute-packages: genvalidity-containers: [ i686-linux, x86_64-linux, x86_64-darwin ] genvalidity-hspec-aeson: [ i686-linux, x86_64-linux, x86_64-darwin ] genvalidity-hspec-cereal: [ i686-linux, x86_64-linux, x86_64-darwin ] + genvalidity-hspec-hashable: [ i686-linux, x86_64-linux, x86_64-darwin ] genvalidity-hspec: [ i686-linux, x86_64-linux, x86_64-darwin ] genvalidity-path: [ i686-linux, x86_64-linux, x86_64-darwin ] genvalidity-text: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4473,6 +4504,7 @@ dont-distribute-packages: gogol-safebrowsing: [ i686-linux, x86_64-linux, x86_64-darwin ] gogol-servicecontrol: [ i686-linux, x86_64-linux, x86_64-darwin ] gogol-servicemanagement: [ i686-linux, x86_64-linux, x86_64-darwin ] + gogol-sheets: [ i686-linux, x86_64-linux, x86_64-darwin ] gogol-slides: [ i686-linux, x86_64-linux, x86_64-darwin ] gooey: [ i686-linux, x86_64-linux, x86_64-darwin ] GoogleDirections: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4500,6 +4532,7 @@ dont-distribute-packages: GPipe-Collada: [ i686-linux, x86_64-linux, x86_64-darwin ] GPipe-Examples: [ i686-linux, x86_64-linux, x86_64-darwin ] GPipe-GLFW: [ i686-linux, x86_64-linux, x86_64-darwin ] + GPipe: [ i686-linux, x86_64-linux, x86_64-darwin ] GPipe-TextureLoad: [ i686-linux, x86_64-linux, x86_64-darwin ] gps2htmlReport: [ i686-linux, x86_64-linux, x86_64-darwin ] gps: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4544,6 +4577,7 @@ dont-distribute-packages: greg-client: [ i686-linux, x86_64-linux, x86_64-darwin ] gremlin-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] Grempa: [ i686-linux, x86_64-linux, x86_64-darwin ] + grenade: [ i686-linux, x86_64-linux, x86_64-darwin ] gridbounds: [ i686-linux, x86_64-linux, x86_64-darwin ] gridfs: [ i686-linux, x86_64-linux, x86_64-darwin ] grid: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4664,6 +4698,7 @@ dont-distribute-packages: halfs: [ i686-linux, x86_64-linux, x86_64-darwin ] halipeto: [ i686-linux, x86_64-linux, x86_64-darwin ] halive: [ i686-linux, x86_64-linux, x86_64-darwin ] + halma-gui: [ i686-linux, x86_64-linux, x86_64-darwin ] halma: [ i686-linux, x86_64-linux, x86_64-darwin ] hamilton: [ i686-linux, x86_64-linux, x86_64-darwin ] HaMinitel: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4788,6 +4823,7 @@ dont-distribute-packages: haskell-formatter: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-ftp: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-generate: [ i686-linux, x86_64-linux, x86_64-darwin ] + haskell-go-checkers: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-igraph: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-import-graph: [ i686-linux, x86_64-linux, x86_64-darwin ] haskell-kubernetes: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -4941,6 +4977,7 @@ dont-distribute-packages: heaps: [ i686-linux, x86_64-linux, x86_64-darwin ] hecc: [ i686-linux, x86_64-linux, x86_64-darwin ] heckle: [ i686-linux, x86_64-linux, x86_64-darwin ] + hedgehog: [ i686-linux, x86_64-linux, x86_64-darwin ] Hedi: [ i686-linux, x86_64-linux, x86_64-darwin ] hedis-pile: [ i686-linux, x86_64-linux, x86_64-darwin ] hedis-simple: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5097,10 +5134,12 @@ dont-distribute-packages: HLearn-distributions: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-api: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-chart: [ i686-linux, x86_64-linux, x86_64-darwin ] + hledger-irr: [ i686-linux, x86_64-linux, x86_64-darwin ] hledger-vty: [ i686-linux, x86_64-linux, x86_64-darwin ] hlibBladeRF: [ i686-linux, x86_64-linux, x86_64-darwin ] hlibev: [ i686-linux, x86_64-linux, x86_64-darwin ] hlibfam: [ i686-linux, x86_64-linux, x86_64-darwin ] + hlibsass: [ i686-linux, x86_64-linux, x86_64-darwin ] HList: [ i686-linux, x86_64-linux, x86_64-darwin ] HListPP: [ i686-linux, x86_64-linux, x86_64-darwin ] hlogger: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5114,6 +5153,7 @@ dont-distribute-packages: hmatrix-glpk: [ i686-linux, x86_64-linux, x86_64-darwin ] hmatrix-mmap: [ i686-linux, x86_64-linux, x86_64-darwin ] hmatrix-nipals: [ i686-linux, x86_64-linux, x86_64-darwin ] + hmatrix-nlopt: [ i686-linux, x86_64-linux, x86_64-darwin ] hmatrix-quadprogpp: [ i686-linux, x86_64-linux, x86_64-darwin ] hmatrix-repa: [ i686-linux, x86_64-linux, x86_64-darwin ] hmatrix-special: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5236,6 +5276,7 @@ dont-distribute-packages: hs2dot: [ i686-linux, x86_64-linux, x86_64-darwin ] Hs2lib: [ i686-linux, x86_64-linux, x86_64-darwin ] hS3: [ i686-linux, x86_64-linux, x86_64-darwin ] + hsass: [ i686-linux, x86_64-linux, x86_64-darwin ] hsay: [ i686-linux, x86_64-linux, x86_64-darwin ] hsbackup: [ i686-linux, x86_64-linux, x86_64-darwin ] hsbencher-codespeed: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5329,6 +5370,7 @@ dont-distribute-packages: hspec-expectations-pretty: [ i686-linux, x86_64-linux, x86_64-darwin ] hspec-experimental: [ i686-linux, x86_64-linux, x86_64-darwin ] hspec-golden-aeson: [ i686-linux, x86_64-linux, x86_64-darwin ] + hspec-hedgehog: [ i686-linux, x86_64-linux, x86_64-darwin ] hspec-jenkins: [ i686-linux, x86_64-linux, x86_64-darwin ] hspec-monad-control: [ i686-linux, x86_64-linux, x86_64-darwin ] hspec-shouldbe: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5612,6 +5654,7 @@ dont-distribute-packages: ipopt-hs: [ i686-linux, x86_64-linux, x86_64-darwin ] iptables-helpers: [ i686-linux, x86_64-linux, x86_64-darwin ] iptadmin: [ i686-linux, x86_64-linux, x86_64-darwin ] + IPv6DB: [ i686-linux, x86_64-linux, x86_64-darwin ] ipython-kernel: [ i686-linux, x86_64-linux, x86_64-darwin ] ircbot: [ i686-linux, x86_64-linux, x86_64-darwin ] irc-core: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5664,6 +5707,7 @@ dont-distribute-packages: jalaali: [ i686-linux, x86_64-linux, x86_64-darwin ] jalla: [ i686-linux, x86_64-linux, x86_64-darwin ] jarfind: [ i686-linux, x86_64-linux, x86_64-darwin ] + jarify: [ i686-linux, x86_64-linux, x86_64-darwin ] jason: [ i686-linux, x86_64-linux, x86_64-darwin ] java-bridge-extras: [ i686-linux, x86_64-linux, x86_64-darwin ] java-bridge: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5755,6 +5799,7 @@ dont-distribute-packages: kansas-lava-papilio: [ i686-linux, x86_64-linux, x86_64-darwin ] kansas-lava-shake: [ i686-linux, x86_64-linux, x86_64-darwin ] karakuri: [ i686-linux, x86_64-linux, x86_64-darwin ] + karps: [ i686-linux, x86_64-linux, x86_64-darwin ] katip-elasticsearch: [ i686-linux, x86_64-linux, x86_64-darwin ] katip: [ i686-linux, x86_64-linux, x86_64-darwin ] katt: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -5910,6 +5955,7 @@ dont-distribute-packages: legion-extra: [ i686-linux, x86_64-linux, x86_64-darwin ] legion: [ i686-linux, x86_64-linux, x86_64-darwin ] leksah: [ i686-linux, x86_64-linux, x86_64-darwin ] + leksah-server: [ i686-linux, x86_64-linux, x86_64-darwin ] lendingclub: [ i686-linux, x86_64-linux, x86_64-darwin ] lenses: [ i686-linux, x86_64-linux, x86_64-darwin ] lens-properties: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6097,6 +6143,7 @@ dont-distribute-packages: lui: [ i686-linux, x86_64-linux, x86_64-darwin ] luis-client: [ i686-linux, x86_64-linux, x86_64-darwin ] luka: [ i686-linux, x86_64-linux, x86_64-darwin ] + luminance: [ i686-linux, x86_64-linux, x86_64-darwin ] luminance-samples: [ i686-linux, x86_64-linux, x86_64-darwin ] lushtags: [ i686-linux, x86_64-linux, x86_64-darwin ] luthor: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6553,6 +6600,7 @@ dont-distribute-packages: nix-eval: [ i686-linux, x86_64-linux, x86_64-darwin ] nixfromnpm: [ i686-linux, x86_64-linux, x86_64-darwin ] nkjp: [ i686-linux, x86_64-linux, x86_64-darwin ] + nlopt-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] nlp-scores-scripts: [ i686-linux, x86_64-linux, x86_64-darwin ] nme: [ i686-linux, x86_64-linux, x86_64-darwin ] n-m: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6594,6 +6642,8 @@ dont-distribute-packages: numerals-base: [ i686-linux, x86_64-linux, x86_64-darwin ] numerals: [ i686-linux, x86_64-linux, x86_64-darwin ] numeric-ranges: [ i686-linux, x86_64-linux, x86_64-darwin ] + numhask: [ i686-linux, x86_64-linux, x86_64-darwin ] + numhask-range: [ i686-linux, x86_64-linux, x86_64-darwin ] Nussinov78: [ i686-linux, x86_64-linux, x86_64-darwin ] Nutri: [ i686-linux, x86_64-linux, x86_64-darwin ] nvim-hs-contrib: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6787,6 +6837,7 @@ dont-distribute-packages: peparser: [ i686-linux, x86_64-linux, x86_64-darwin ] perceptron: [ i686-linux, x86_64-linux, x86_64-darwin ] perdure: [ i686-linux, x86_64-linux, x86_64-darwin ] + peregrin: [ i686-linux, x86_64-linux, x86_64-darwin ] perfecthash: [ i686-linux, x86_64-linux, x86_64-darwin ] PerfectHash: [ i686-linux, x86_64-linux, x86_64-darwin ] period: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6878,6 +6929,7 @@ dont-distribute-packages: playlists: [ i686-linux, x86_64-linux, x86_64-darwin ] plist-buddy: [ i686-linux, x86_64-linux, x86_64-darwin ] plivo: [ i686-linux, x86_64-linux, x86_64-darwin ] + plocketed: [ i686-linux, x86_64-linux, x86_64-darwin ] plot-gtk-ui: [ i686-linux, x86_64-linux, x86_64-darwin ] plot-lab: [ i686-linux, x86_64-linux, x86_64-darwin ] PlslTools: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6924,6 +6976,7 @@ dont-distribute-packages: PortFusion: [ i686-linux, x86_64-linux, x86_64-darwin ] ports: [ i686-linux, x86_64-linux, x86_64-darwin ] posix-acl: [ i686-linux, x86_64-linux, x86_64-darwin ] + posix-pty: [ i686-linux, x86_64-linux, x86_64-darwin ] posix-waitpid: [ i686-linux, x86_64-linux, x86_64-darwin ] postcodes: [ i686-linux, x86_64-linux, x86_64-darwin ] PostgreSQL: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -6935,8 +6988,7 @@ dont-distribute-packages: postgresql-simple-sop: [ i686-linux, x86_64-linux, x86_64-darwin ] postgresql-simple-typed: [ i686-linux, x86_64-linux, x86_64-darwin ] postgresql-typed: [ i686-linux, x86_64-linux, x86_64-darwin ] - postgrest: [ i686-linux, x86_64-linux, x86_64-darwin ] - postgrest-ws: [ i686-linux, x86_64-linux, x86_64-darwin ] + postgresql-typed-lifted: [ i686-linux, x86_64-linux, x86_64-darwin ] postie: [ i686-linux, x86_64-linux, x86_64-darwin ] postmark: [ i686-linux, x86_64-linux, x86_64-darwin ] postmark-streams: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7038,6 +7090,7 @@ dont-distribute-packages: pure-priority-queue-tests: [ i686-linux, x86_64-linux, x86_64-darwin ] purescript-bridge: [ i686-linux, x86_64-linux, x86_64-darwin ] purescript-bundle-fast: [ i686-linux, x86_64-linux, x86_64-darwin ] + purescript: [ i686-linux, x86_64-linux, x86_64-darwin ] pure-zlib: [ i686-linux, x86_64-linux, x86_64-darwin ] pusher-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] pusher-http-haskell: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7260,6 +7313,7 @@ dont-distribute-packages: rei: [ i686-linux, x86_64-linux, x86_64-darwin ] reinterpret-cast: [ i686-linux, x86_64-linux, x86_64-darwin ] relapse: [ i686-linux, x86_64-linux, x86_64-darwin ] + relational-record-examples: [ i686-linux, x86_64-linux, x86_64-darwin ] relation: [ i686-linux, x86_64-linux, x86_64-darwin ] relative-date: [ i686-linux, x86_64-linux, x86_64-darwin ] reload: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7380,6 +7434,7 @@ dont-distribute-packages: rss2irc: [ i686-linux, x86_64-linux, x86_64-darwin ] rss: [ i686-linux, x86_64-linux, x86_64-darwin ] rtcm: [ i686-linux, x86_64-linux, x86_64-darwin ] + rtnetlink: [ i686-linux, x86_64-linux, x86_64-darwin ] rtorrent-rpc: [ i686-linux, x86_64-linux, x86_64-darwin ] rtorrent-state: [ i686-linux, x86_64-linux, x86_64-darwin ] rts-loader: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7585,6 +7640,7 @@ dont-distribute-packages: shaker: [ i686-linux, x86_64-linux, x86_64-darwin ] shakers: [ i686-linux, x86_64-linux, x86_64-darwin ] shakespeare-babel: [ i686-linux, x86_64-linux, x86_64-darwin ] + shakespeare-sass: [ i686-linux, x86_64-linux, x86_64-darwin ] shapely-data: [ i686-linux, x86_64-linux, x86_64-darwin ] shared-buffer: [ i686-linux, x86_64-linux, x86_64-darwin ] shared-fields: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -7760,6 +7816,7 @@ dont-distribute-packages: SoccerFunGL: [ i686-linux, x86_64-linux, x86_64-darwin ] SoccerFun: [ i686-linux, x86_64-linux, x86_64-darwin ] sock2stream: [ i686-linux, x86_64-linux, x86_64-darwin ] + socketed: [ i686-linux, x86_64-linux, x86_64-darwin ] socket-io: [ i686-linux, x86_64-linux, x86_64-darwin ] socketio: [ i686-linux, x86_64-linux, x86_64-darwin ] socket-sctp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8312,6 +8369,7 @@ dont-distribute-packages: type-ord-spine-cereal: [ i686-linux, x86_64-linux, x86_64-darwin ] typeparams: [ i686-linux, x86_64-linux, x86_64-darwin ] type-prelude: [ i686-linux, x86_64-linux, x86_64-darwin ] + typesafe-precure: [ i686-linux, x86_64-linux, x86_64-darwin ] types-compat: [ i686-linux, x86_64-linux, x86_64-darwin ] typescript-docs: [ i686-linux, x86_64-linux, x86_64-darwin ] type-settheory: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8538,6 +8596,7 @@ dont-distribute-packages: webkit: [ i686-linux, x86_64-linux, x86_64-darwin ] webkit-javascriptcore: [ i686-linux, x86_64-linux, x86_64-darwin ] web-mongrel2: [ i686-linux, x86_64-linux, x86_64-darwin ] + web-output: [ i686-linux, x86_64-linux, x86_64-darwin ] web-page: [ i686-linux, x86_64-linux, x86_64-darwin ] web-push: [ i686-linux, x86_64-linux, x86_64-darwin ] Webrexp: [ i686-linux, x86_64-linux, x86_64-darwin ] @@ -8714,6 +8773,7 @@ dont-distribute-packages: yeller: [ i686-linux, x86_64-linux, x86_64-darwin ] yeshql: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-angular-ui: [ i686-linux, x86_64-linux, x86_64-darwin ] + yesod-articles: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-auth-account-fork: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-auth-basic: [ i686-linux, x86_64-linux, x86_64-darwin ] yesod-auth-bcrypt: [ i686-linux, x86_64-linux, x86_64-darwin ] diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index b9e96886ac5..15dca1c0bc5 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -433,7 +433,7 @@ self: super: builtins.intersectAttrs super { haskell-gi-base = addBuildDepend super.haskell-gi-base pkgs.gobjectIntrospection; # Requires gi-javascriptcore API version 4 - gi-webkit2 = super.gi-webkit2.override { gi-javascriptcore = self.gi-javascriptcore_4_0_11; }; + gi-webkit2 = super.gi-webkit2.override { gi-javascriptcore = self.gi-javascriptcore_4_0_12; }; # requires valid, writeable $HOME hatex-guide = overrideCabal super.hatex-guide (drv: { @@ -454,4 +454,8 @@ self: super: builtins.intersectAttrs super { export PATH="$PWD/dist/build/intero:$PATH" ''; }); + + # loc and loc-test depend on each other for testing. Break that infinite cycle: + loc-test = super.loc-test.override { loc = dontCheck self.loc; }; + } diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix index f7d16a89df8..653e5cd245c 100644 --- a/pkgs/development/haskell-modules/generic-builder.nix +++ b/pkgs/development/haskell-modules/generic-builder.nix @@ -63,7 +63,8 @@ assert enableSplitObjs == null; let inherit (stdenv.lib) optional optionals optionalString versionOlder versionAtLeast - concatStringsSep enableFeature optionalAttrs toUpper; + concatStringsSep enableFeature optionalAttrs toUpper + filter makeLibraryPath; isGhcjs = ghc.isGhcjs or false; isHaLVM = ghc.isHaLVM or false; @@ -227,6 +228,22 @@ stdenv.mkDerivation ({ configureFlags+=" --extra-lib-dirs=$p/lib" fi done + '' + (optionalString stdenv.isDarwin '' + # Work around a limit in the Mac OS X Sierra linker on the number of paths + # referenced by any one dynamic library: + # + # Create a local directory with symlinks of the *.dylib (Mac OS X shared + # libraries) from all the dependencies. + local dynamicLinksDir="$out/lib/links" + mkdir -p $dynamicLinksDir + for d in $(grep dynamic-library-dirs $packageConfDir/*|awk '{print $2}'); do + ln -s $d/*.dylib $dynamicLinksDir + done + # Edit the local package DB to reference the links directory. + for f in $packageConfDir/*.conf; do + sed -i "s,dynamic-library-dirs: .*,dynamic-library-dirs: $dynamicLinksDir," $f + done + '') + '' ${ghcCommand}-pkg --${packageDbFlag}="$packageConfDir" recache runHook postSetupCompilerEnvironment @@ -330,6 +347,9 @@ stdenv.mkDerivation ({ export NIX_${ghcCommandCaps}="${ghcEnv}/bin/${ghcCommand}" export NIX_${ghcCommandCaps}PKG="${ghcEnv}/bin/${ghcCommand}-pkg" export NIX_${ghcCommandCaps}_DOCDIR="${ghcEnv}/share/doc/ghc/html" + export LD_LIBRARY_PATH="''${LD_LIBRARY_PATH:+''${LD_LIBRARY_PATH}:}${ + makeLibraryPath (filter (x: !isNull x) systemBuildInputs) + }" ${if isHaLVM then ''export NIX_${ghcCommandCaps}_LIBDIR="${ghcEnv}/lib/HaLVM-${ghc.version}"'' else ''export NIX_${ghcCommandCaps}_LIBDIR="${ghcEnv}/lib/${ghcCommand}-${ghc.version}"''} diff --git a/pkgs/development/haskell-modules/generic-stack-builder.nix b/pkgs/development/haskell-modules/generic-stack-builder.nix index 1a16cf3683f..53772b90dfb 100644 --- a/pkgs/development/haskell-modules/generic-stack-builder.nix +++ b/pkgs/development/haskell-modules/generic-stack-builder.nix @@ -37,7 +37,6 @@ stdenv.mkDerivation (args // { configurePhase = args.configurePhase or '' export STACK_ROOT=$NIX_BUILD_TOP/.stack - stack setup ''; buildPhase = args.buildPhase or "stack build"; diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index ee906366630..13a06b33630 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -1377,8 +1377,8 @@ self: { }: mkDerivation { pname = "BioHMM"; - version = "1.1.0"; - sha256 = "0072b6a48008d3f3ffb360d7c6ba493f44167a3f9eb5341a9ff25fc6f8dbc78a"; + version = "1.1.3"; + sha256 = "8a225ad7e6e8239b3363c808adfd95f7296b49f35edfc9150d4779db08a59240"; libraryHaskellDepends = [ base colour diagrams-cairo diagrams-lib directory either-unwrap filepath parsec ParsecTools StockholmAlignment SVGFonts text vector @@ -1683,8 +1683,8 @@ self: { }: mkDerivation { pname = "BitStringRandomMonad"; - version = "0.2.0.2"; - sha256 = "9142bd6d2494e6585037efe2c4e9040dcb7b781cfa1881d116b2534abf1333fc"; + version = "1.0.0.1"; + sha256 = "fd6471a3de45b16114c9612dc378fe5ad92bbf61d3ee879f40ec014aad47d3ea"; libraryHaskellDepends = [ base bitstring bytestring mtl parallel primitive transformers vector @@ -1824,6 +1824,7 @@ self: { testHaskellDepends = [ base containers MissingH parsec ]; description = "A markdown-like markup language designed for blog posts"; license = stdenv.lib.licenses.agpl3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "BluePrintCSS" = callPackage @@ -3910,18 +3911,22 @@ self: { }) {}; "Delta-Lambda" = callPackage - ({ mkDerivation, base, bytestring, cereal, cpphs, filepath + ({ mkDerivation, base, bytestring, Cabal, cereal, cpphs, filepath , haskeline, megaparsec, mtl, options, parallel, text, wl-pprint }: mkDerivation { pname = "Delta-Lambda"; - version = "0.2.0.0"; - sha256 = "257636843d457a08119e1e410b46fa5ea51e25f1b84cfed0b27355fb96afb232"; + version = "0.3.0.0"; + sha256 = "18f7a1c899fd7a4f1b5055d02050a98f024f7afcdb6092b550b30514942265fc"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - base bytestring cereal cpphs filepath haskeline megaparsec mtl - options parallel text wl-pprint + base bytestring Cabal cereal cpphs filepath haskeline megaparsec + mtl options parallel text wl-pprint + ]; + testHaskellDepends = [ + base bytestring Cabal cereal cpphs filepath haskeline megaparsec + mtl options parallel text wl-pprint ]; homepage = "https://github.com/listofoptions/delta-lambda"; description = "A demonstration interpreter for type system delta-lambda (of N.G. De-bruijn)"; @@ -5028,6 +5033,7 @@ self: { librarySystemDepends = [ ftgl ]; description = "Portable TrueType font rendering for OpenGL using the Freetype2 library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) ftgl;}; "FTGL-bytestring" = callPackage @@ -5880,8 +5886,8 @@ self: { }: mkDerivation { pname = "GLUT"; - version = "2.7.0.11"; - sha256 = "da270ef3027f48fd62115e6f1e90a44334e3da5524e4619dbab6d186f5511b5d"; + version = "2.7.0.12"; + sha256 = "66f516bd9f836e5252fe0186e447b68a61b594d9247466c502b74994d3e9f1b5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -5933,8 +5939,8 @@ self: { }: mkDerivation { pname = "GPipe"; - version = "2.1.8"; - sha256 = "236735a9ed98628d70c66f153378ff8a8b6e84c6e3d9ede1c1d0c2cc66e1fbca"; + version = "2.2.1"; + sha256 = "8f8c2391b49dab16ae4b241ff7e4728f1c61c275ff422d42fc326c779508a7bc"; libraryHaskellDepends = [ base Boolean containers exception-transformers gl hashtables linear transformers @@ -5942,6 +5948,7 @@ self: { homepage = "https://github.com/tobbebex/GPipe-Core#readme"; description = "Typesafe functional GPU graphics programming"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "GPipe-Collada" = callPackage @@ -5978,19 +5985,12 @@ self: { }) {}; "GPipe-GLFW" = callPackage - ({ mkDerivation, base, exception-transformers, GLFW-b, GPipe - , transformers - }: + ({ mkDerivation, async, base, containers, GLFW-b, GPipe, stm }: mkDerivation { pname = "GPipe-GLFW"; - version = "1.3.0"; - sha256 = "f929bfa320a76ca8c9769bf38b9de6b8928b9ef63f9b09c31a9dfe209f8826b6"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base GLFW-b GPipe transformers ]; - executableHaskellDepends = [ - base exception-transformers GPipe transformers - ]; + version = "1.4.1"; + sha256 = "6b86172c72c254c203a6bbab0848375538a52d90dc888ca1c517199d51714647"; + libraryHaskellDepends = [ async base containers GLFW-b GPipe stm ]; homepage = "https://github.com/plredmond/GPipe-GLFW"; description = "GLFW OpenGL context creation for GPipe"; license = stdenv.lib.licenses.mit; @@ -6622,16 +6622,15 @@ self: { "Graphalyze" = callPackage ({ mkDerivation, array, base, bktrees, containers, directory, fgl - , filepath, graphviz, old-locale, pandoc, process, random, text - , time + , filepath, graphviz, pandoc, process, random, text, time }: mkDerivation { pname = "Graphalyze"; - version = "0.14.1.1"; - sha256 = "9792207d74f5aff52b3e5b83378db480702b8b5e1b13e65113e2f32e7687ce9f"; + version = "0.15.0.0"; + sha256 = "ac40fcb75d530932e14ff1dab09ab2d85c9679f27d75b88be3d4c76b5d1986c3"; libraryHaskellDepends = [ array base bktrees containers directory fgl filepath graphviz - old-locale pandoc process random text time + pandoc process random text time ]; description = "Graph-Theoretic Analysis library"; license = "unknown"; @@ -7131,6 +7130,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) mpfr;}; + "HFitUI" = callPackage + ({ mkDerivation, base, blaze-html, blaze-markup, MissingH, mtl + , process, random, shakespeare, template-haskell, text, uuid + }: + mkDerivation { + pname = "HFitUI"; + version = "0.1.0.0"; + sha256 = "9def238955e90842ffc334e1dfa6bfa8fc20cf64b75b5e3be89333c5ccd3713c"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base blaze-html blaze-markup MissingH mtl process random + shakespeare template-haskell text uuid + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/iqsf/HFitUI.git"; + description = "The library for generating a graphical interface on the web"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "HFrequencyQueue" = callPackage ({ mkDerivation, base, c-storable-deriving }: mkDerivation { @@ -7160,6 +7180,7 @@ self: { homepage = "https://github.com/m15k/hfuse"; description = "HFuse is a binding for the Linux FUSE library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) fuse;}; "HGE2D" = callPackage @@ -8215,6 +8236,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "HSet_0_0_1" = callPackage + ({ mkDerivation, base, containers, hashable, hashtables }: + mkDerivation { + pname = "HSet"; + version = "0.0.1"; + sha256 = "eba93be5a76581585ae33af6babe9c2718fae307d41989cd36a605d9b0e8d16a"; + libraryHaskellDepends = [ base containers hashable hashtables ]; + description = "Faux heterogeneous sets"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "HSlippyMap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -8624,8 +8657,8 @@ self: { }: mkDerivation { pname = "HaTeX"; - version = "3.17.1.0"; - sha256 = "c497c6b2853018b09016c4422f22d18956881fc774066626d7c43c8b8f0917c3"; + version = "3.17.2.0"; + sha256 = "8553ca581953e8d98fa0274b06fec72bbcf7f8a981ad7a1b8028b47e23ec6b91"; libraryHaskellDepends = [ base bytestring containers matrix parsec QuickCheck text transformers wl-pprint-extras @@ -8659,15 +8692,14 @@ self: { "HaTeX-qq" = callPackage ({ mkDerivation, antiquoter, base, haskell-src-meta, HaTeX - , template-haskell, text, uniplate + , template-haskell, text }: mkDerivation { pname = "HaTeX-qq"; - version = "0.0.1.2"; - sha256 = "60db927820811c1bbc17890e21188caeb9441f40c6a5fb5c5436101eca4a0c61"; + version = "0.1.0.1"; + sha256 = "a82d8e00acc08cbec76e2a5971404a0ac1a8063e8e8f183975ae2624c4964fa4"; libraryHaskellDepends = [ antiquoter base haskell-src-meta HaTeX template-haskell text - uniplate ]; description = "Quasiquoters for HaTeX"; license = stdenv.lib.licenses.bsd3; @@ -9085,6 +9117,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "Hastodon" = callPackage + ({ mkDerivation, aeson, base, bytestring, http-conduit, http-types + , MissingH, text + }: + mkDerivation { + pname = "Hastodon"; + version = "0.0.2"; + sha256 = "ee1e4d903a04a01095004775409a231fe304c391b3f9d805201f87b7709ca5f0"; + libraryHaskellDepends = [ + aeson base bytestring http-conduit http-types MissingH text + ]; + homepage = "https://github.com/syucream/hastodon"; + description = "mastodon client module for Haskell"; + license = stdenv.lib.licenses.mit; + }) {}; + "Hate" = callPackage ({ mkDerivation, base, bytestring, GLFW-b, GLUtil, hpp, JuicyPixels , JuicyPixels-util, lens, mtl, multimap, OpenGL, random, stm @@ -9633,32 +9681,14 @@ self: { }) {Judy = null;}; "HsOpenSSL" = callPackage - ({ mkDerivation, base, bytestring, integer-gmp, network, openssl - , time + ({ mkDerivation, base, bytestring, Cabal, integer-gmp, network + , openssl, time }: mkDerivation { pname = "HsOpenSSL"; - version = "0.11.4.6"; - sha256 = "1ad6cbb50fc1ecaa98baa6de3660a9b82a9d101f17396b0da9b6c598b1114c4c"; - libraryHaskellDepends = [ - base bytestring integer-gmp network time - ]; - librarySystemDepends = [ openssl ]; - testHaskellDepends = [ base bytestring ]; - homepage = "https://github.com/vshabanov/HsOpenSSL"; - description = "Partial OpenSSL binding for Haskell"; - license = stdenv.lib.licenses.publicDomain; - hydraPlatforms = stdenv.lib.platforms.none; - }) {inherit (pkgs) openssl;}; - - "HsOpenSSL_0_11_4_7" = callPackage - ({ mkDerivation, base, bytestring, integer-gmp, network, openssl - , time - }: - mkDerivation { - pname = "HsOpenSSL"; - version = "0.11.4.7"; - sha256 = "d37bc6ce6e9a36d725a91763bafdb492a61d18630968aab5ee7f2493e89d5f64"; + version = "0.11.4.8"; + sha256 = "cc4d050827788ed1e36c314af8951c589b602febd819df43f12c5b671548211f"; + setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ base bytestring integer-gmp network time ]; @@ -9999,6 +10029,7 @@ self: { homepage = "https://github.com/MichelBoucey/IPv6DB"; description = "A RESTful Web Service for IPv6-related data"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "IcoGrid" = callPackage @@ -10413,6 +10444,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "JuicyPixels-extra_0_2_0" = callPackage + ({ mkDerivation, base, criterion, hspec, JuicyPixels }: + mkDerivation { + pname = "JuicyPixels-extra"; + version = "0.2.0"; + sha256 = "f599ea9986ba7d38fd33214786c4d2a2f28b4039f21efa39115100930b64279d"; + libraryHaskellDepends = [ base JuicyPixels ]; + testHaskellDepends = [ base hspec JuicyPixels ]; + benchmarkHaskellDepends = [ base criterion JuicyPixels ]; + homepage = "https://github.com/mrkkrp/JuicyPixels-extra"; + description = "Efficiently scale, crop, flip images with JuicyPixels"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "JuicyPixels-repa" = callPackage ({ mkDerivation, base, bytestring, JuicyPixels, repa, vector }: mkDerivation { @@ -11875,10 +11921,10 @@ self: { ({ mkDerivation, base, glib, template-haskell }: mkDerivation { pname = "MissingK"; - version = "0.0.0.2"; - sha256 = "0360502acec1fbd91ca0ee5a7ed92d0a7f025b3a6e9a53647924f878cbfbd633"; + version = "0.0.1"; + sha256 = "dfc6a6e9dca10b2b67957381cec11cc5169e0f946237fe459299854dcc7c1ef5"; libraryHaskellDepends = [ base glib template-haskell ]; - homepage = "http://www.keera.es/blog/community/"; + homepage = "http://www.keera.co.uk/blog/"; description = "Useful types and definitions missing from other libraries"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -13257,8 +13303,8 @@ self: { }: mkDerivation { pname = "OpenGL"; - version = "3.0.1.0"; - sha256 = "f45c0c65aa31108391d5d86bb65b3e945e0c1102b7d09db4b356c060f3afa2da"; + version = "3.0.2.0"; + sha256 = "faa99459724d614d2cf2d2b83c7bda4898ee71752a253bf4699c096822450efb"; libraryHaskellDepends = [ base bytestring containers GLURaw ObjectName OpenGLRaw StateVar text transformers @@ -13885,8 +13931,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "Piso"; - version = "0.1"; - sha256 = "03455602293e88a9860129f0c2825db907257923dabf5fa9684de955b6e27088"; + version = "0.2"; + sha256 = "36dd199c6799d7f171928d5d57b3dbd621dadb019fc1fc7cf5d62cf2e1e43f1f"; libraryHaskellDepends = [ base template-haskell ]; homepage = "https://github.com/MedeaMelana/Piso"; description = "Partial isomorphisms"; @@ -14019,6 +14065,7 @@ self: { homepage = "http://github.com/ninegua/PortMidi"; description = "A binding for PortMedia/PortMidi"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) alsaLib;}; "PostgreSQL" = callPackage @@ -14781,6 +14828,7 @@ self: { homepage = "http://raincat.bysusanlin.com/"; description = "A puzzle game written in Haskell with a cat in lead role"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {}; "Random123" = callPackage @@ -15703,8 +15751,8 @@ self: { }: mkDerivation { pname = "SelectSequencesFromMSA"; - version = "1.0.2"; - sha256 = "e0bcbec57109cd8528e2fd511b4ca5ea17cbffad4bac4f7a71bad90e0ba2271c"; + version = "1.0.3"; + sha256 = "4cbff4e5e788381c57ecbc1164b762ae0489c8b165fae8fc8be17d0636ff5644"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -16235,8 +16283,8 @@ self: { ({ mkDerivation, array, base, HGL, random, Yampa }: mkDerivation { pname = "SpaceInvaders"; - version = "0.4.2"; - sha256 = "03993ad20fb5142605b7b94208825ee7b847934435efcd720acc8c517d49bec5"; + version = "0.4.4"; + sha256 = "e9639e3a5e8376dc6a404cb238b83fc2550fadd62808450cbfe6651696812a4a"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ array base HGL random Yampa ]; @@ -16565,8 +16613,8 @@ self: { }: mkDerivation { pname = "StockholmAlignment"; - version = "1.0.2"; - sha256 = "4267e5eeb5bf0f962c557ac84cf7dfec748e442d091fd12e687d033993213abb"; + version = "1.1.0"; + sha256 = "6cfae60f6acbcbab470480bf6b3ee0af7c2442e4c8d010d9972f91bc99a29b79"; libraryHaskellDepends = [ base colour diagrams-cairo diagrams-lib directory either-unwrap filepath parsec ParsecTools SVGFonts text vector @@ -17855,6 +17903,28 @@ self: { license = "GPL"; }) {}; + "Villefort" = callPackage + ({ mkDerivation, base, FindBin, HDBC, HDBC-sqlite3, mtl, scotty + , split, text, time + }: + mkDerivation { + pname = "Villefort"; + version = "0.1.0.6"; + sha256 = "1d3f0293e020c48206f6ca6cdabbca4042edbc1a9ae1c14484f5c00087d247f8"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base FindBin HDBC HDBC-sqlite3 mtl split time + ]; + executableHaskellDepends = [ + base HDBC HDBC-sqlite3 scotty split text time + ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/Chrisr850/Villefort#readme"; + description = "Villefort is a task manager and time tracker written in haskell"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "Vulkan" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -18816,8 +18886,22 @@ self: { ({ mkDerivation, base, deepseq, random }: mkDerivation { pname = "Yampa"; - version = "0.10.5"; - sha256 = "ebb5fb1091f913b246fb2e9dd8278d642dbb88bfd248e34fff1ac796299cf6d7"; + version = "0.10.5.1"; + sha256 = "cb9d8fe10b49489a04f1dd5117351e7ba82da6702fd103390cf21ae4f3ed40e3"; + libraryHaskellDepends = [ base deepseq random ]; + testHaskellDepends = [ base ]; + homepage = "http://www.haskell.org/haskellwiki/Yampa"; + description = "Library for programming hybrid systems"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "Yampa_0_10_6" = callPackage + ({ mkDerivation, base, deepseq, random }: + mkDerivation { + pname = "Yampa"; + version = "0.10.6"; + sha256 = "565334aa1cfd775f51a53b98f2bfdffd84e2edb6d590966e72d36a34367d0a18"; libraryHaskellDepends = [ base deepseq random ]; testHaskellDepends = [ base ]; homepage = "http://www.haskell.org/haskellwiki/Yampa"; @@ -19331,13 +19415,13 @@ self: { "accelerate-cublas" = callPackage ({ mkDerivation, accelerate, accelerate-arithmetic, accelerate-cuda - , accelerate-io, accelerate-utility, base, cublas, cuda, random - , utility-ht, vector + , accelerate-io, accelerate-utility, base, cublas, cuda, hmatrix + , pooled-io, random, timeit, utility-ht, vector }: mkDerivation { pname = "accelerate-cublas"; - version = "0.0"; - sha256 = "4c27f8f6dca4c6e822cc731fe89ab90712f29acb341ad856791aa97db15199b5"; + version = "0.1"; + sha256 = "c6a7a167ccafb7feae7f54d7a0f3cca5df1b404d19fde74abae090d54a67701a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -19346,9 +19430,13 @@ self: { ]; executableHaskellDepends = [ accelerate accelerate-arithmetic accelerate-cuda accelerate-utility - base cublas random + base random ]; - homepage = "http://code.haskell.org/~thielema/accelerate-cublas/"; + benchmarkHaskellDepends = [ + accelerate accelerate-arithmetic accelerate-cuda accelerate-utility + base cuda hmatrix pooled-io random timeit utility-ht + ]; + homepage = "http://hub.darcs.net/thielema/accelerate-cublas/"; description = "Basic Linear Algebra using native CUBLAS library"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -19385,8 +19473,8 @@ self: { }: mkDerivation { pname = "accelerate-cufft"; - version = "0.0.0.1"; - sha256 = "d78fd117e67ad141910f1a95ec5c82beb351bfe9a144c8cdb36fe94950055c8d"; + version = "0.0.1"; + sha256 = "82edc068a682202ac50f07a3414d084cf3e5e50171144c14137f2966452bf270"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -19514,15 +19602,15 @@ self: { }: mkDerivation { pname = "accelerate-fourier-benchmark"; - version = "0.0"; - sha256 = "ea65bce4c026c4ac47a34ed80d5901f2b14d06c94dbe7693acce58a992d5e998"; + version = "0.0.0.1"; + sha256 = "37ac3787e7b759a2df2e0c9d1a6a6938402a7fc25ff99266d00aba62c304f67d"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ accelerate accelerate-cuda accelerate-cufft accelerate-fftw accelerate-fourier base criterion ]; - homepage = "http://code.haskell.org/~thielema/accelerate-fourier-benchmark/"; + homepage = "http://hub.darcs.net/thielema/accelerate-fourier-benchmark/"; description = "Compare different implementations of the Fast Fourier Transform"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -19564,6 +19652,7 @@ self: { ]; description = "Accelerate backend generating LLVM"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "accelerate-llvm-native" = callPackage @@ -19583,6 +19672,7 @@ self: { ]; description = "Accelerate backend generating LLVM"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "accelerate-llvm-ptx" = callPackage @@ -19830,8 +19920,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "acme-cofunctor"; - version = "0.1.0.0"; - sha256 = "d5ecbe477dd579fec0c6f6ad5d8f05d884de65af6570d519703896ecfe08311a"; + version = "0.1.1.0"; + sha256 = "9d3c87320b56a20b5d22c77f8ee7add4c725a44ea517352253b0d0b5c0b5b479"; libraryHaskellDepends = [ base ]; homepage = "https://github.com/jaspervdj/acme-cofunctor"; description = "A Cofunctor is a structure from category theory dual to Functor"; @@ -20333,6 +20423,8 @@ self: { pname = "active"; version = "0.2.0.12"; sha256 = "55281f8fad2b2776969d04d1769fb99498477b58570e02f7a5c69022e3a8b91e"; + revision = "2"; + editedCabalFile = "58b6749d9d67ccbe610228fa9a3e1d511205c60895def6249d560b09778ea19f"; libraryHaskellDepends = [ base lens linear semigroupoids semigroups vector ]; @@ -20410,14 +20502,15 @@ self: { }) {}; "ad" = callPackage - ({ mkDerivation, array, base, comonad, containers, criterion - , data-reify, directory, doctest, erf, filepath, free, nats - , reflection, transformers + ({ mkDerivation, array, base, Cabal, cabal-doctest, comonad + , containers, criterion, data-reify, directory, doctest, erf + , filepath, free, nats, reflection, transformers }: mkDerivation { pname = "ad"; - version = "4.3.2.1"; - sha256 = "84de5524f60a088f4a326956434c74f32b9c4961be616fb3f1fbea620413e39d"; + version = "4.3.3"; + sha256 = "72b88c1703d57cbe41636d379f4e0ced50c65dd1e540a4b25c95eaf60767db2a"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ array base comonad containers data-reify erf free nats reflection transformers @@ -20674,35 +20767,6 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "aeson_0_11_3_0" = callPackage - ({ mkDerivation, attoparsec, base, base-orphans, bytestring - , containers, deepseq, dlist, fail, ghc-prim, hashable, HUnit, mtl - , QuickCheck, quickcheck-instances, scientific, syb, tagged - , template-haskell, test-framework, test-framework-hunit - , test-framework-quickcheck2, text, time, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "aeson"; - version = "0.11.3.0"; - sha256 = "f326fac57881c228d91f610a2c92f083a60e3830d9c7d35dfb0a16925c95ece9"; - libraryHaskellDepends = [ - attoparsec base bytestring containers deepseq dlist fail ghc-prim - hashable mtl scientific syb tagged template-haskell text time - transformers unordered-containers vector - ]; - testHaskellDepends = [ - attoparsec base base-orphans bytestring containers ghc-prim - hashable HUnit QuickCheck quickcheck-instances tagged - template-haskell test-framework test-framework-hunit - test-framework-quickcheck2 text time unordered-containers vector - ]; - homepage = "https://github.com/bos/aeson"; - description = "Fast JSON parsing and encoding"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - "aeson" = callPackage ({ mkDerivation, attoparsec, base, base-compat, base-orphans , base16-bytestring, bytestring, containers, deepseq, dlist @@ -21015,6 +21079,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "aeson-injector_1_0_8_0" = callPackage + ({ mkDerivation, aeson, base, bifunctors, deepseq, HUnit, lens + , QuickCheck, quickcheck-text, scientific, servant-docs, swagger2 + , tasty, tasty-hunit, tasty-quickcheck, text, unordered-containers + , vector + }: + mkDerivation { + pname = "aeson-injector"; + version = "1.0.8.0"; + sha256 = "51f9e703b9f3dcdacc8477e6c4d7f0fdb7d3ebacd27907e52503d95bb582accc"; + libraryHaskellDepends = [ + aeson base bifunctors deepseq lens servant-docs swagger2 text + unordered-containers + ]; + testHaskellDepends = [ + aeson base HUnit lens QuickCheck quickcheck-text scientific + swagger2 tasty tasty-hunit tasty-quickcheck text vector + ]; + description = "Injecting fields into aeson values"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "aeson-iproute" = callPackage ({ mkDerivation, aeson, base, iproute, text }: mkDerivation { @@ -21317,8 +21404,8 @@ self: { pname = "aeson-utils"; version = "0.3.0.2"; sha256 = "71814b1be8849f945395eb81217a2ad464f2943134c50c09afd8a3126add4b1f"; - revision = "4"; - editedCabalFile = "48548049168c1e48d31414994dcea638dec56dba620c1752b41d4fa975b7020e"; + revision = "5"; + editedCabalFile = "ae9f74efc346334bcfc1124785765d9e2c4749da7d247500a3c168b46c4ad76c"; libraryHaskellDepends = [ aeson attoparsec base bytestring scientific text ]; @@ -21555,12 +21642,17 @@ self: { }) {}; "aig" = callPackage - ({ mkDerivation, base, base-compat, mtl, QuickCheck, vector }: + ({ mkDerivation, base, base-compat, mtl, QuickCheck, tasty + , tasty-ant-xml, tasty-quickcheck, vector + }: mkDerivation { pname = "aig"; - version = "0.2.4"; - sha256 = "ac0e06a707b7488de7e1f9d7b123703e2df14763f9e6448d67c4dd20ffdc88eb"; + version = "0.2.5"; + sha256 = "392f047901f63ed229b6987f2ceccb5d8980d86e33ddea9369dbf2ea23b8b984"; libraryHaskellDepends = [ base base-compat mtl QuickCheck vector ]; + testHaskellDepends = [ + base QuickCheck tasty tasty-ant-xml tasty-quickcheck + ]; description = "And-inverter graphs in Haskell"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -21931,15 +22023,18 @@ self: { }) {}; "alex" = callPackage - ({ mkDerivation, array, base, containers, directory, happy, process - , QuickCheck + ({ mkDerivation, array, base, Cabal, containers, directory + , filepath, happy, process, QuickCheck }: mkDerivation { pname = "alex"; version = "3.2.1"; sha256 = "a4e7f7ec729f4fae5a5c778bc48421a90acf65c7278f6970cf123fb3b6230e6c"; + revision = "1"; + editedCabalFile = "3a68e66a9cca5d3c2574bbb6e1a137178200d4444874977a8a28aad9002d80da"; isLibrary = false; isExecutable = true; + setupHaskellDepends = [ base Cabal directory filepath ]; executableHaskellDepends = [ array base containers directory QuickCheck ]; @@ -22423,6 +22518,7 @@ self: { homepage = "https://github.com/ttuegel/alsa-mixer"; description = "Bindings to the ALSA simple mixer API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) alsaLib;}; "alsa-pcm" = callPackage @@ -22443,6 +22539,7 @@ self: { homepage = "http://www.haskell.org/haskellwiki/ALSA"; description = "Binding to the ALSA Library API (PCM audio)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) alsaLib;}; "alsa-pcm-tests" = callPackage @@ -22478,6 +22575,7 @@ self: { homepage = "http://www.haskell.org/haskellwiki/ALSA"; description = "Binding to the ALSA Library API (MIDI sequencer)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) alsaLib;}; "alsa-seq-tests" = callPackage @@ -24710,6 +24808,19 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "animate" = callPackage + ({ mkDerivation, base, hspec, vector }: + mkDerivation { + pname = "animate"; + version = "0.0.0"; + sha256 = "693de5c29775d6b80dc04b9e7c0af9520efbd87632774bacb3217b85ab9ba821"; + libraryHaskellDepends = [ base vector ]; + testHaskellDepends = [ base hspec vector ]; + homepage = "https://github.com/jxv/animate#readme"; + description = "Animation for sprites"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "anki-tools" = callPackage ({ mkDerivation, aeson, base, bytestring, data-default, directory , exceptions, filepath, mtl, scientific, sqlite-simple, text, time @@ -25164,8 +25275,8 @@ self: { }: mkDerivation { pname = "api-field-json-th"; - version = "0.1.0.1"; - sha256 = "88befb216037f0460950cd91960db2ba7789231b6ab829b04b2b9dd60a007626"; + version = "0.1.0.2"; + sha256 = "b8d49c3869bc8104539c43d5544ed2271d1e68a963440d781ee71d2252b0f724"; libraryHaskellDepends = [ aeson base lens split template-haskell text ]; @@ -25930,36 +26041,6 @@ self: { }: mkDerivation { pname = "arbtt"; - version = "0.9.0.12"; - sha256 = "3bdd4171a6d68ff3604eb752d04fdc6e819ab90f021e65ff12f5f6c7e62e87cf"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - aeson array base binary bytestring bytestring-progress containers - deepseq directory filepath parsec pcre-light strict - terminal-progress-bar time transformers unix utf8-string X11 - ]; - executableSystemDepends = [ libXScrnSaver ]; - testHaskellDepends = [ - base binary bytestring containers deepseq directory parsec - pcre-light process-extras tasty tasty-golden tasty-hunit time - transformers unix utf8-string - ]; - homepage = "http://arbtt.nomeata.de/"; - description = "Automatic Rule-Based Time Tracker"; - license = "GPL"; - hydraPlatforms = stdenv.lib.platforms.none; - }) {inherit (pkgs.xorg) libXScrnSaver;}; - - "arbtt_0_9_0_13" = callPackage - ({ mkDerivation, aeson, array, base, binary, bytestring - , bytestring-progress, containers, deepseq, directory, filepath - , libXScrnSaver, parsec, pcre-light, process-extras, strict, tasty - , tasty-golden, tasty-hunit, terminal-progress-bar, time - , transformers, unix, utf8-string, X11 - }: - mkDerivation { - pname = "arbtt"; version = "0.9.0.13"; sha256 = "89be821c7233ce7a3b9ba6df4ba7f82547f3326b3cfc7aa3197c207d0896403d"; isLibrary = false; @@ -26614,22 +26695,22 @@ self: { "arx" = callPackage ({ mkDerivation, attoparsec, base, blaze-builder, bytestring - , bytestring-nums, containers, file-embed, parsec, process - , shell-escape, template-haskell + , bytestring-nums, containers, file-embed, hashable, parsec + , process, shell-escape, template-haskell }: mkDerivation { pname = "arx"; - version = "0.2.2"; - sha256 = "a294fdbeb0e5da2762e855620c75289fbac09872efa76c14e1a47dd2d2ef8011"; + version = "0.2.3"; + sha256 = "0a829da8c71fc55da968483764a97838fdf5fe043f6d9302ab606aa7cd609db6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ attoparsec base blaze-builder bytestring bytestring-nums containers - file-embed parsec process shell-escape template-haskell + file-embed hashable parsec process shell-escape template-haskell ]; executableHaskellDepends = [ attoparsec base blaze-builder bytestring bytestring-nums containers - file-embed parsec process shell-escape template-haskell + file-embed hashable parsec process shell-escape template-haskell ]; homepage = "http://github.com/solidsnack/arx/"; description = "Archive execution tool"; @@ -27003,6 +27084,32 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) assimp;}; + "ast-monad" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "ast-monad"; + version = "0.1.0.0"; + sha256 = "11c05f4b95c92c67bc4cb210d987a66a734ab0118b65d162da9a5108e9da0c0d"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/mkdag/ast-monad#readme"; + description = "A library for constructing AST by using do-notation"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "ast-monad-json" = callPackage + ({ mkDerivation, ast-monad, base, hspec, text }: + mkDerivation { + pname = "ast-monad-json"; + version = "0.1.0.1"; + sha256 = "e6bb46a3104a0c5e7e1eacd020397d423c6bbc09f3393a4dcf999ca22afb1728"; + libraryHaskellDepends = [ ast-monad base text ]; + testHaskellDepends = [ ast-monad base hspec text ]; + homepage = "https://github.com/mkdag/ast-monad-json#readme"; + description = "A library for writing JSON"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "astar" = callPackage ({ mkDerivation, base, hashable, psqueues, unordered-containers }: mkDerivation { @@ -27298,8 +27405,8 @@ self: { }: mkDerivation { pname = "atlassian-connect-core"; - version = "0.7.0.2"; - sha256 = "6872f0ca4a70c50942b239828621fda3923a3763921130150be20c568c40ff50"; + version = "0.7.2.0"; + sha256 = "25cc9902cc87845a569f48ec7b379d5ceb83b7fcf9751f2908e69b00aec3db39"; libraryHaskellDepends = [ aeson atlassian-connect-descriptor base base64-bytestring bytestring case-insensitive cipher-aes configurator containers @@ -27321,8 +27428,8 @@ self: { }: mkDerivation { pname = "atlassian-connect-descriptor"; - version = "0.4.4.2"; - sha256 = "9352e134c720358694b7e839c5056ce62334303d0db9cb94e151c086da123598"; + version = "0.4.5.0"; + sha256 = "a05e750e20af9f0cf32ddd154215550a6fda5b44b8f9b120c3fd71158ee7fa37"; libraryHaskellDepends = [ aeson base cases network network-uri text time-units unordered-containers @@ -27762,8 +27869,8 @@ self: { }: mkDerivation { pname = "attoparsec-data"; - version = "0.1.1.2"; - sha256 = "65ff7d4a796ea2c1991aeda1e288f0ff931e5fb1831d6571faa3cf68a9367b58"; + version = "1.0.2"; + sha256 = "4b0931f86f331589344a1bb1f358683f168c2b565d4fd31cc238dfba01a27262"; libraryHaskellDepends = [ attoparsec attoparsec-time base base-prelude bytestring scientific text time @@ -27870,13 +27977,15 @@ self: { "attoparsec-time" = callPackage ({ mkDerivation, attoparsec, base, base-prelude, directory, doctest - , filepath, text, time + , filepath, scientific, text, time }: mkDerivation { pname = "attoparsec-time"; - version = "0.1.1.1"; - sha256 = "8d1ae65e5798e451ca692b0492dd58cde17b33c1a1239bb635215728de7419bb"; - libraryHaskellDepends = [ attoparsec base-prelude text time ]; + version = "0.1.3.2"; + sha256 = "e02e05c58fe7d8d44c5fde8a11ab3a5aabd0f97a1e1d81d27d04e8982cfef45c"; + libraryHaskellDepends = [ + attoparsec base base-prelude scientific text time + ]; testHaskellDepends = [ base base-prelude directory doctest filepath ]; @@ -28355,8 +28464,8 @@ self: { pname = "avers"; version = "0.0.17.1"; sha256 = "1b45d8aa036b3c2ec7ea180327ff3cdce28dc1e1ef319c062be79f0ffa7626f5"; - revision = "9"; - editedCabalFile = "3037f35d45d512a965f96b9f3d707c6ebed6b8096c579b055b62e62de9ed801c"; + revision = "10"; + editedCabalFile = "92f2a3994aad55e07b6627314f2ab13f7fcdab47ac76df45a1f4fcc64480ec3a"; libraryHaskellDepends = [ aeson attoparsec base bytestring clock containers cryptonite filepath inflections memory MonadRandom mtl network network-uri @@ -28702,8 +28811,8 @@ self: { }: mkDerivation { pname = "aws-ec2"; - version = "0.3.5"; - sha256 = "17df4a182a25d1de78cddf933e9a9ae342d989e55487cbbc6b307ced4e2aef3b"; + version = "0.3.6"; + sha256 = "a4ba2b8fd6d00b69813330fd0ea3caccbca53c350f0f1a4601ab827ad99d6592"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -29439,6 +29548,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ballast" = callPackage + ({ mkDerivation, aeson, base, bytestring, either-unwrap, hspec + , hspec-expectations, http-client, http-client-tls, http-types + , text, time, transformers, unordered-containers, utf8-string + , vector + }: + mkDerivation { + pname = "ballast"; + version = "0.1.0.0"; + sha256 = "0e9fd358b4f39fb0f0379fd22b934b6e11a5fde515d306d87d3248428b747fea"; + libraryHaskellDepends = [ + aeson base bytestring either-unwrap hspec hspec-expectations + http-client http-client-tls http-types text time transformers + unordered-containers utf8-string vector + ]; + testHaskellDepends = [ + base bytestring either-unwrap hspec hspec-expectations text time + ]; + homepage = "https://github.com/bitemyapp/ballast#readme"; + description = "Shipwire API client"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "bamboo" = callPackage ({ mkDerivation, base, bytestring, containers, data-default , directory, filepath, gravatar, hack, hack-contrib, haskell98, mps @@ -29772,6 +29904,20 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "base-feature-macros" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "base-feature-macros"; + version = "0.1"; + sha256 = "be1ba0e207be3558f5b061785dd363fd63613034e00488b022be7655561d39ab"; + revision = "1"; + editedCabalFile = "d92172580179ae9338cb58504d1b05c058ce0d593ef4f67a88dbef842f693ae6"; + libraryHaskellDepends = [ base ]; + doHaddock = false; + description = "Semantic CPP feature macros for base"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "base-generics" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -30103,8 +30249,8 @@ self: { ({ mkDerivation, base, deepseq, generics-sop, QuickCheck, text }: mkDerivation { pname = "basic-sop"; - version = "0.2.0.0"; - sha256 = "8bec41c8501e9db661eea4d789ba167b6d0492c8fa69233826644c388656a891"; + version = "0.2.0.2"; + sha256 = "c743fed1ec725786b1238d3c23fa4e1634abee9d837c56264b290f3e36fda531"; libraryHaskellDepends = [ base deepseq generics-sop QuickCheck text ]; @@ -30840,29 +30986,6 @@ self: { }: mkDerivation { pname = "bifunctors"; - version = "5.4.1"; - sha256 = "3746f971f69ce31ced23d12e4785d96985f5c620ac7a26d5f4efead970c43b87"; - revision = "1"; - editedCabalFile = "64c592384987528035860a9b2b5d77995f16e9c7d138cf7310e1facd42e36505"; - libraryHaskellDepends = [ - base base-orphans comonad containers semigroups tagged - template-haskell transformers transformers-compat - ]; - testHaskellDepends = [ - base hspec QuickCheck transformers transformers-compat - ]; - homepage = "http://github.com/ekmett/bifunctors/"; - description = "Bifunctors"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "bifunctors_5_4_2" = callPackage - ({ mkDerivation, base, base-orphans, comonad, containers, hspec - , QuickCheck, semigroups, tagged, template-haskell, transformers - , transformers-compat - }: - mkDerivation { - pname = "bifunctors"; version = "5.4.2"; sha256 = "38620267824abbf834f708f1b7cf10307c1d2719b1a0f8ae49330a1002dfdc8d"; libraryHaskellDepends = [ @@ -30876,7 +30999,6 @@ self: { homepage = "http://github.com/ekmett/bifunctors/"; description = "Bifunctors"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "bighugethesaurus" = callPackage @@ -31018,8 +31140,8 @@ self: { }: mkDerivation { pname = "bimap"; - version = "0.3.2"; - sha256 = "148fc2d9784aa79faf49a979881a2304102a70d13e32fa8ce9f18ab466dc3db8"; + version = "0.3.3"; + sha256 = "73829355c7bcbd3eedba22a382a04a3ab641702b00828790ec082ec2db3a8ad1"; libraryHaskellDepends = [ base containers exceptions ]; testHaskellDepends = [ base containers exceptions QuickCheck template-haskell @@ -31534,8 +31656,8 @@ self: { pname = "binary-tagged"; version = "0.1.4.2"; sha256 = "311fab8c2bac00cb6785cb144e25ed58b2efce85e5dc64e30e2b5a2a16cdc784"; - revision = "4"; - editedCabalFile = "76530b6075b691eed9d1986d7487a03470a30abc3b92c7bb32abdcbe1a60b963"; + revision = "5"; + editedCabalFile = "39affff3f143ba26ab239ac04876f0a96f98a42fc4e19d55077532e20c9b34ab"; libraryHaskellDepends = [ aeson array base base16-bytestring binary bytestring containers generics-sop hashable nats scientific semigroups SHA tagged text @@ -31860,6 +31982,7 @@ self: { libraryPkgconfigDepends = [ directfb ]; description = "Low level bindings to DirectFB"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) directfb;}; "bindings-eskit" = callPackage @@ -33024,15 +33147,16 @@ self: { }) {}; "bits" = callPackage - ({ mkDerivation, base, bytes, directory, doctest, filepath, mtl + ({ mkDerivation, base, bytes, Cabal, cabal-doctest, doctest, mtl , transformers }: mkDerivation { pname = "bits"; - version = "0.5"; - sha256 = "5834fbf0c5b4c5d0259f9aae9631c906e184a50606786132896307f15e406f1a"; + version = "0.5.1"; + sha256 = "657e557bb913b53fb3b3fc7eda820cf3c85a5b89692d242275d3e8e8d9479c93"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base bytes mtl transformers ]; - testHaskellDepends = [ base directory doctest filepath ]; + testHaskellDepends = [ base doctest ]; homepage = "http://github.com/ekmett/bits"; description = "Various bit twiddling and bitwise serialization primitives"; license = stdenv.lib.licenses.bsd3; @@ -33463,8 +33587,8 @@ self: { pname = "blank-canvas"; version = "0.6"; sha256 = "2a0e5c4fc50b1ce43e56b1a11056186c21d565e225da36f90c58f8c0a70f48b3"; - revision = "10"; - editedCabalFile = "b3fca3e52b9662881d181fa39c63b5b5095f77f83f0fd223c2a4cfeffa05a486"; + revision = "11"; + editedCabalFile = "06e4ddd08f0655253a5e5129eeb8790e5667f679c8c806cd1133b3998870bad8"; libraryHaskellDepends = [ aeson base base-compat base64-bytestring bytestring colour containers data-default-class http-types kansas-comet mime-types @@ -33899,16 +34023,14 @@ self: { "ble" = callPackage ({ mkDerivation, base, bytestring, cereal, containers, d-bus - , data-default-class, hslogger, hspec, microlens, microlens-ghc - , microlens-th, mtl, QuickCheck, quickcheck-instances, random, stm - , text, transformers, uuid + , data-default-class, hslogger, hspec, markdown-unlit, microlens + , microlens-ghc, microlens-th, mtl, QuickCheck + , quickcheck-instances, random, stm, text, transformers, uuid }: mkDerivation { pname = "ble"; - version = "0.3.1.0"; - sha256 = "d3ef2722c649903a26ddbc4d78bf8b7121d5f0bac84fc71ebad4c02e8f9e798c"; - revision = "1"; - editedCabalFile = "7ff3ee0a435f1d611c4ae67323913260a53fc3e22947c1db00bdf721bba7d45b"; + version = "0.3.4.0"; + sha256 = "aff4728db140e90a29139939b862c69d279e1034c732d152bcadce846a148c98"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -33918,8 +34040,8 @@ self: { ]; executableHaskellDepends = [ base bytestring cereal containers d-bus data-default-class hslogger - microlens microlens-ghc microlens-th mtl random stm text - transformers uuid + markdown-unlit microlens microlens-ghc microlens-th mtl random stm + text transformers uuid ]; testHaskellDepends = [ base bytestring cereal containers d-bus data-default-class hslogger @@ -34241,6 +34363,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "bluemix-sdk" = callPackage + ({ mkDerivation, aeson, base, http-client, http-types, text, vector + }: + mkDerivation { + pname = "bluemix-sdk"; + version = "0.1.0.0"; + sha256 = "b2e941e5e7a64b95edda1851fb5c082b81ed4e2897e8c8a2d07b926f7835fd48"; + libraryHaskellDepends = [ + aeson base http-client http-types text vector + ]; + homepage = "https://github.com/agrafix/bluemix-sdk#readme"; + description = "Bindings to Bluemix APIs"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "bluetile" = callPackage ({ mkDerivation, base, ConfigFile, containers, directory, filepath , glade, gtk, gtk2, mtl, process, random, regex-compat, unix @@ -34852,22 +34989,23 @@ self: { }) {}; "bound" = callPackage - ({ mkDerivation, base, bifunctors, binary, bytes, cereal, comonad - , directory, doctest, filepath, hashable, hashable-extras - , prelude-extras, profunctors, template-haskell, transformers - , vector + ({ mkDerivation, base, bifunctors, binary, bytes, Cabal + , cabal-doctest, cereal, comonad, deepseq, deriving-compat, doctest + , functor-classes-compat, hashable, mmorph, profunctors + , template-haskell, transformers, transformers-compat, vector, void }: mkDerivation { pname = "bound"; - version = "1.0.7"; - sha256 = "ad0388ade83ca0b3cf02b182e663f553a83b3a8116ada8f39543318bf516340e"; + version = "2"; + sha256 = "5d08b02ae1f17764ced96d497510a60cb9937ecf2b1faf3fdf791039a799c37c"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ - base bifunctors binary bytes cereal comonad hashable - hashable-extras prelude-extras profunctors template-haskell - transformers + base bifunctors binary bytes cereal comonad deepseq hashable mmorph + profunctors template-haskell transformers transformers-compat ]; testHaskellDepends = [ - base directory doctest filepath prelude-extras transformers vector + base deriving-compat doctest functor-classes-compat transformers + transformers-compat vector void ]; homepage = "http://github.com/ekmett/bound/"; description = "Making de Bruijn Succ Less"; @@ -35058,19 +35196,20 @@ self: { }) {}; "brainheck" = callPackage - ({ mkDerivation, base, containers, lens, megaparsec, mtl + ({ mkDerivation, base, containers, criterion, lens, megaparsec, mtl , optparse-applicative, recursion-schemes, text, vector }: mkDerivation { pname = "brainheck"; - version = "0.1.0.1"; - sha256 = "50f9f8aa9b2b31ab7bb85151ed986d6de4aa1a334bd8eea6dafdbd56d7c30a40"; + version = "0.1.0.3"; + sha256 = "aa7652d200e9f5576670e051fa14264c70b29913240f6859c4a6e215e51a252c"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base containers lens megaparsec mtl recursion-schemes text vector ]; executableHaskellDepends = [ base optparse-applicative text ]; + benchmarkHaskellDepends = [ base criterion text ]; homepage = "https://github.com/vmchale/brainheck#readme"; description = "Brainh*ck interpreter in haskell"; license = stdenv.lib.licenses.bsd3; @@ -35223,6 +35362,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {broker = null;}; + "browscap" = callPackage + ({ mkDerivation, base, bytestring, deepseq, ini, lens, lrucache + , mtl, text, unordered-containers, wreq + }: + mkDerivation { + pname = "browscap"; + version = "0"; + sha256 = "90a4480af371b1cbb1e7ff4fdcbfa67c77c8febdc6f7bf40f53242b124ab2f16"; + libraryHaskellDepends = [ + base bytestring deepseq ini lens lrucache mtl text + unordered-containers wreq + ]; + homepage = "https://oss.xkcd.com"; + description = "A reader and interface for the Browser Capabilities Project data files"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "bsd-sysctl" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -35875,19 +36031,22 @@ self: { }) {}; "bytes" = callPackage - ({ mkDerivation, base, binary, bytestring, cereal, containers - , hashable, mtl, scientific, text, time, transformers - , transformers-compat, unordered-containers, void + ({ mkDerivation, base, binary, bytestring, Cabal, cabal-doctest + , cereal, containers, directory, doctest, filepath, hashable, mtl + , scientific, text, time, transformers, transformers-compat + , unordered-containers, void }: mkDerivation { pname = "bytes"; - version = "0.15.2"; - sha256 = "0bfaaf70154d3622be1ee620dd75e9c93cf4d4a21544d83f281d01439f261f34"; + version = "0.15.3"; + sha256 = "d8dcd6b66492db37e48b95535cf3bf91b1b0f356fedba403eb73f81158e0cd4d"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base binary bytestring cereal containers hashable mtl scientific text time transformers transformers-compat unordered-containers void ]; + testHaskellDepends = [ base directory doctest filepath ]; homepage = "https://github.com/ekmett/bytes"; description = "Sharing code for serialization between binary and cereal"; license = stdenv.lib.licenses.bsd3; @@ -36566,8 +36725,8 @@ self: { }: mkDerivation { pname = "cab"; - version = "0.2.16"; - sha256 = "f9f9f9c178ad486ff29186b519d6993a8429c3fa34a43d8ed42525c20df5585f"; + version = "0.2.17"; + sha256 = "07657d004cc43f420904881d83d35ee796116a5ef4966ebaef32a5044245cd52"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -36794,6 +36953,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "cabal-doctest_1_0_1" = callPackage + ({ mkDerivation, base, Cabal, directory, filepath }: + mkDerivation { + pname = "cabal-doctest"; + version = "1.0.1"; + sha256 = "549af049e10373ffdcea29688216881b63e69fa3a982cdb0d0f14c18b3aa48ba"; + libraryHaskellDepends = [ base Cabal directory filepath ]; + homepage = "https://github.com/phadej/cabal-doctest"; + description = "A Setup.hs helper for doctests running"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "cabal-file-th" = callPackage ({ mkDerivation, base, Cabal, directory, pretty, template-haskell }: @@ -36900,8 +37072,8 @@ self: { }: mkDerivation { pname = "cabal-info"; - version = "0.1.0.0"; - sha256 = "d7623ce69cdf180f3266cc14fcf4e53f4d5b2c4d9cb359f145a730878096fc6d"; + version = "0.2.1"; + sha256 = "9484ab621cf0b502edea1430966919005cf323b30ad83c8aac8912930072c4bd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -37441,8 +37613,8 @@ self: { }: mkDerivation { pname = "cabal2nix"; - version = "2.1.1"; - sha256 = "1f628410eb6a1a8cba4a80c6ba0d9aa75f495594360fed83cd2223be548854bd"; + version = "2.2.1"; + sha256 = "a7bb4ac56256944edb5232ff32d83627fd96c3d2bdb3c0475582bd30dbe883c3"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -37543,6 +37715,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "cabalish" = callPackage + ({ mkDerivation, base, Cabal, classy-prelude, directory, filepath + , optparse-applicative, text + }: + mkDerivation { + pname = "cabalish"; + version = "0.1.0.2"; + sha256 = "f1eec66796d8a909c7ae613fe5d40ea82087961b9bb05c24652479f82438a179"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base Cabal classy-prelude directory filepath optparse-applicative + text + ]; + homepage = "https://github.com/RobertFischer/cabalish#readme"; + description = "Provides access to the cabal file data for shell scripts"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "cabalmdvrpm" = callPackage ({ mkDerivation, base, Cabal, cabalrpmdeps, haskell98 }: mkDerivation { @@ -38632,8 +38823,8 @@ self: { }: mkDerivation { pname = "case-insensitive"; - version = "1.2.0.8"; - sha256 = "27aa610a7e0128c346d4a5cddb5d395a85b0889e4a9912acbb3b9ccbc4e99f68"; + version = "1.2.0.9"; + sha256 = "a7de8c4708ff47cd5d4138b74b5fae40cc271eed2635e2fe4da72066fb93d2b8"; libraryHaskellDepends = [ base bytestring deepseq hashable text ]; testHaskellDepends = [ base bytestring HUnit test-framework test-framework-hunit text @@ -38728,22 +38919,15 @@ self: { }) {}; "casr-logbook" = callPackage - ({ mkDerivation, base, casr-logbook-html, casr-logbook-meta - , casr-logbook-meta-html, casr-logbook-reports - , casr-logbook-reports-html, casr-logbook-reports-meta - , casr-logbook-reports-meta-html, casr-logbook-types, digit - , directory, doctest, filepath, lucid, QuickCheck, template-haskell - , time + ({ mkDerivation, base, containers, digit, directory, doctest + , filepath, lens, lucid, QuickCheck, template-haskell, text, time }: mkDerivation { pname = "casr-logbook"; - version = "0.2.2"; - sha256 = "2eeb37db62ead7f718d4ef252e6492f4d2ff827fc24cc58f8da6f3205fe37fb6"; + version = "0.3.0"; + sha256 = "d0fe58cded95a230025580bc36bc2bfee68438bb22a6a839b639b3922fdf79c1"; libraryHaskellDepends = [ - base casr-logbook-html casr-logbook-meta casr-logbook-meta-html - casr-logbook-reports casr-logbook-reports-html - casr-logbook-reports-meta casr-logbook-reports-meta-html - casr-logbook-types digit lucid time + base containers digit lens lucid text time ]; testHaskellDepends = [ base directory doctest filepath QuickCheck template-haskell @@ -39266,27 +39450,6 @@ self: { }: mkDerivation { pname = "cayley-client"; - version = "0.4.0"; - sha256 = "bdd21a245b6db5102d11096746edd85545d150ee835c0324e554d8b812ee6571"; - libraryHaskellDepends = [ - aeson attoparsec base binary bytestring exceptions http-client - http-conduit lens lens-aeson mtl text transformers - unordered-containers vector - ]; - testHaskellDepends = [ aeson base hspec unordered-containers ]; - homepage = "https://github.com/MichelBoucey/cayley-client"; - description = "A Haskell client for the Cayley graph database"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "cayley-client_0_4_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, binary, bytestring - , exceptions, hspec, http-client, http-conduit, lens, lens-aeson - , mtl, text, transformers, unordered-containers, vector - }: - mkDerivation { - pname = "cayley-client"; version = "0.4.1"; sha256 = "98de26b33e95d45298afb182c961079dd9219bdebbb4a98c8bfb69c296140987"; libraryHaskellDepends = [ @@ -39433,6 +39596,7 @@ self: { libraryPkgconfigDepends = [ gtk2 ]; description = "Raw CEF3 bindings"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {cef = null; gtk2 = pkgs.gnome2.gtk;}; "cef3-simple" = callPackage @@ -39444,6 +39608,7 @@ self: { libraryHaskellDepends = [ base cef3-raw ]; description = "Simple wrapper around cef3-raw"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ceilometer-common" = callPackage @@ -39881,8 +40046,8 @@ self: { }: mkDerivation { pname = "cgrep"; - version = "6.6.16"; - sha256 = "7161e331f409ee95abfab14f720ad300ce4c9bd37a9fae74de6643c0f30b134b"; + version = "6.6.17"; + sha256 = "029103cbdd3e312a5bc80f9e25b8fa8f0b9910f9948ed272f2f3bbf9ea4351a3"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -41092,6 +41257,28 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "cj-token" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, containers, either + , hspec, jwt, QuickCheck, text, text-conversions, time + }: + mkDerivation { + pname = "cj-token"; + version = "0.0.1"; + sha256 = "75b768ec0bb6d167f9a0fd6314025e29784d465f615225ba5c29582788c0c568"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64-bytestring containers either jwt text + text-conversions time + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base hspec jwt QuickCheck text text-conversions time + ]; + description = "A new Haskeleton package"; + license = stdenv.lib.licenses.isc; + }) {}; + "cjk" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers, text , text-icu @@ -41304,10 +41491,8 @@ self: { }: mkDerivation { pname = "clash-ghc"; - version = "0.7.1"; - sha256 = "b942391622ccc093daf78de34d81fff0f29e097f769c7cb403a802f79ae39b25"; - revision = "1"; - editedCabalFile = "567b69e3b3872430406fa5b1db7f86051fe42b6fc5f23c57a01a74fa62d54d8f"; + version = "0.7.2"; + sha256 = "d08f8673cc720c74d5337f8d72851134b2ed5d4c54a7683e6a88d503e4ae51ba"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -41371,8 +41556,8 @@ self: { }: mkDerivation { pname = "clash-prelude"; - version = "0.11.1"; - sha256 = "afb318ea893448638372745cb3387f57569eb4d715c2d9462876d8e3570086b1"; + version = "0.11.2"; + sha256 = "947134269d198bf4b4e35a4a893d61504740bed071deeda4f3b3608627668bb1"; libraryHaskellDepends = [ array base constraints data-binary-ieee754 data-default deepseq ghc-prim ghc-typelits-extra ghc-typelits-knownnat @@ -41407,8 +41592,8 @@ self: { }: mkDerivation { pname = "clash-systemverilog"; - version = "0.7.1"; - sha256 = "65a920a186465159a7c01a8dc3853470b3c93d22d7f663795da11dea62402b3b"; + version = "0.7.2"; + sha256 = "3eaad8b635695e90faa468ee33c6a8a2daaa769dd3a63ee70fc10fccad47d514"; libraryHaskellDepends = [ base clash-lib clash-prelude fgl hashable lens mtl text unordered-containers wl-pprint-text @@ -41425,8 +41610,8 @@ self: { }: mkDerivation { pname = "clash-verilog"; - version = "0.7.1"; - sha256 = "364a45e0643fdaafda32e485bf3c79990b2862a65665fb8a4952d91d4fe87ded"; + version = "0.7.2"; + sha256 = "5344184f2ad3b4474e8aecf57dee0fb2fbebd1b828e4ad3506d5d01a21cc6e25"; libraryHaskellDepends = [ base clash-lib clash-prelude fgl hashable lens mtl text unordered-containers wl-pprint-text @@ -41443,8 +41628,8 @@ self: { }: mkDerivation { pname = "clash-vhdl"; - version = "0.7.1"; - sha256 = "462600defd6bf6ec5ae44c9e084546d7778f1d1fe8ae09885bedd1e712a47dbf"; + version = "0.7.2"; + sha256 = "7a6bb775c4a72463d44861b5ab952428af208a24bbea8cc60653b9c89ea8c3b0"; libraryHaskellDepends = [ base clash-lib clash-prelude fgl hashable lens mtl text unordered-containers wl-pprint-text @@ -42295,6 +42480,7 @@ self: { homepage = "https://github.com/CloudI/cloudi_api_haskell"; description = "Haskell CloudI API"; license = stdenv.lib.licenses.bsdOriginal; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "cloudyfs" = callPackage @@ -42318,6 +42504,108 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "clr-bindings" = callPackage + ({ mkDerivation, base, clr-host, clr-marshal, clr-typed, pipes + , template-haskell, text + }: + mkDerivation { + pname = "clr-bindings"; + version = "0.1.0.0"; + sha256 = "41553a590a7ffeb50303dbdae9ab18b79376ffb3d17ae3b418df41fc574012e7"; + libraryHaskellDepends = [ + base clr-host clr-marshal clr-typed pipes template-haskell text + ]; + testHaskellDepends = [ base ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell/tree/master/libs/clr-bindings"; + description = "Glue between clr-host and clr-typed"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "clr-host" = callPackage + ({ mkDerivation, base, bytestring, Cabal, directory, file-embed + , filepath, glib, mono, transformers + }: + mkDerivation { + pname = "clr-host"; + version = "0.1.0.0"; + sha256 = "5c7d3e30658ad0d9decde2d5b96c382221e915f2fceeb2e23ae7eb3dd40f91dd"; + revision = "1"; + editedCabalFile = "093131d340d6560ccf3b0c951c2f7201e5eb5e15a3937b3d80918fc6b3b4e715"; + setupHaskellDepends = [ + base Cabal directory filepath transformers + ]; + libraryHaskellDepends = [ base bytestring file-embed ]; + librarySystemDepends = [ glib mono ]; + testHaskellDepends = [ base ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell/tree/master/libs/clr-host"; + description = "Hosting the Common Language Runtime"; + license = stdenv.lib.licenses.bsd3; + }) {inherit (pkgs) glib; inherit (pkgs) mono;}; + + "clr-inline" = callPackage + ({ mkDerivation, base, bytestring, Cabal, clr-host, clr-marshal + , containers, criterion, directory, extra, filepath, here, hspec + , lens, process, template-haskell, temporary, text, transformers + }: + mkDerivation { + pname = "clr-inline"; + version = "0.1.0.0"; + sha256 = "b44491ae737d74306ee8e329dbb2112543c462be4400696f0d918a0398d53339"; + libraryHaskellDepends = [ + base bytestring Cabal clr-host clr-marshal containers directory + extra filepath here lens process template-haskell temporary text + transformers + ]; + testHaskellDepends = [ base hspec text ]; + benchmarkHaskellDepends = [ base criterion text ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell"; + description = "Quasiquoters for inline C# and F#"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "clr-marshal" = callPackage + ({ mkDerivation, base, clr-host, text }: + mkDerivation { + pname = "clr-marshal"; + version = "0.1.0.0"; + sha256 = "530ec72001a71e2de21ec4c00a27d19dabeb5dc63f01d2624ca2928fbb82979d"; + libraryHaskellDepends = [ base clr-host text ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell/tree/master/libs/clr-marshal"; + description = "Marshaling for the clr"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "clr-typed" = callPackage + ({ mkDerivation, base, clr-marshal, ghc-prim, text, tuple }: + mkDerivation { + pname = "clr-typed"; + version = "0.1.0.0"; + sha256 = "29d9fa9201383e8a74c992df344450d65c8949ffe52204e0a5092248cf43111f"; + revision = "1"; + editedCabalFile = "4bd80a1d9a2303e5756db026098cb1238c42c6bbafa595acc51ee4089382da09"; + libraryHaskellDepends = [ base clr-marshal ghc-prim text tuple ]; + testHaskellDepends = [ base ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell/tree/master/libs/clr-typed"; + description = "A strongly typed Haskell interface to the CLR type system"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "clr-win-linker" = callPackage + ({ mkDerivation, base, directory, pipes, pipes-safe, process }: + mkDerivation { + pname = "clr-win-linker"; + version = "0.1.0.0"; + sha256 = "db90e14d25371eb6865c188fb22859f24000bc99bec22af76547fa43b170e482"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base directory pipes pipes-safe process + ]; + homepage = "https://gitlab.com/tim-m89/clr-haskell/tree/master/utils/clr-win-linker"; + description = "A GHC linker wrapper tool to workaround a GHC >8.2 bug"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "cltw" = callPackage ({ mkDerivation, base, curl, mtl, random, tagsoup }: mkDerivation { @@ -42505,8 +42793,8 @@ self: { }: mkDerivation { pname = "cmark-sections"; - version = "0.1.0.3"; - sha256 = "08cf3bb1bf87e7e9685fb24f3204df7023b0c5f0bfd6d16c950cba3507651441"; + version = "0.2.0.0"; + sha256 = "8e687cc28d593138c2de00c0d8afa951c969fb2603cafba3985cb34577d03a77"; libraryHaskellDepends = [ base base-prelude cmark containers microlens split text ]; @@ -42762,23 +43050,24 @@ self: { "codec" = callPackage ({ mkDerivation, aeson, base, binary, binary-bits, bytestring - , data-default-class, mtl, template-haskell, text, transformers - , unordered-containers + , generic-arbitrary, mtl, profunctors, tasty, tasty-quickcheck + , template-haskell, text, transformers, unordered-containers + , vector }: mkDerivation { pname = "codec"; - version = "0.1.1"; - sha256 = "3351aa3747ae92db463706c527d1723c22c34dc280ccd14e530f1ca1555b6c3a"; + version = "0.2.1"; + sha256 = "ffc261b58108c3d90c0b0b68461857d1148208d1a9645916e63241aaa3c25b28"; libraryHaskellDepends = [ - aeson base binary binary-bits bytestring data-default-class mtl - template-haskell text transformers unordered-containers + aeson base binary binary-bits bytestring mtl profunctors + template-haskell text transformers unordered-containers vector ]; testHaskellDepends = [ - aeson base binary binary-bits bytestring data-default-class mtl - template-haskell text transformers unordered-containers + aeson base binary bytestring generic-arbitrary tasty + tasty-quickcheck ]; homepage = "https://github.com/chpatrick/codec"; - description = "First-class record construction and bidirectional serialization"; + description = "Simple bidirectional serialization"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -42877,12 +43166,17 @@ self: { }) {}; "codeworld-api" = callPackage - ({ mkDerivation, base, blank-canvas, mtl, random, text, time }: + ({ mkDerivation, base, blank-canvas, cereal, cereal-text + , containers, hashable, mtl, random, text, time + }: mkDerivation { pname = "codeworld-api"; - version = "0.2.0.0"; - sha256 = "b6a5d936bdc8aa1f18d949102646990eeaaa26647f81e2c58bf92cb18e2ecdb9"; - libraryHaskellDepends = [ base blank-canvas mtl random text time ]; + version = "0.2.1.0"; + sha256 = "91d8cb2faab4f93e3c498a5eb6c3ba229649d6e4bc4a45fc7452b3720faf9b52"; + libraryHaskellDepends = [ + base blank-canvas cereal cereal-text containers hashable mtl random + text time + ]; description = "Graphics library for CodeWorld"; license = stdenv.lib.licenses.asl20; hydraPlatforms = stdenv.lib.platforms.none; @@ -43350,6 +43644,7 @@ self: { homepage = "https://github.com/tmcdonell/colour-accelerate"; description = "Working with colours in Accelerate"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "colour-space" = callPackage @@ -43538,6 +43833,7 @@ self: { homepage = "https://oss.xkcd.com/"; description = "A format for describing comics"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "comma" = callPackage @@ -43676,25 +43972,6 @@ self: { }) {}; "comonad" = callPackage - ({ mkDerivation, base, containers, contravariant, directory - , distributive, doctest, filepath, semigroups, tagged, transformers - , transformers-compat - }: - mkDerivation { - pname = "comonad"; - version = "5"; - sha256 = "78e5b19da5b701d14ceb2ca19191cc6205b2024ff2f71b754f5e949faa19cb2a"; - libraryHaskellDepends = [ - base containers contravariant distributive semigroups tagged - transformers transformers-compat - ]; - testHaskellDepends = [ base directory doctest filepath ]; - homepage = "http://github.com/ekmett/comonad/"; - description = "Comonads"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "comonad_5_0_1" = callPackage ({ mkDerivation, base, Cabal, cabal-doctest, containers , contravariant, distributive, doctest, semigroups, tagged , transformers, transformers-compat @@ -43712,7 +43989,6 @@ self: { homepage = "http://github.com/ekmett/comonad/"; description = "Comonads"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "comonad-extras" = callPackage @@ -43888,10 +44164,8 @@ self: { }: mkDerivation { pname = "compdata"; - version = "0.10.1"; - sha256 = "61572f134ec555695905c28db76c8f1f50df531337e56d5c74a16a52c58840cb"; - revision = "1"; - editedCabalFile = "beac5f52bb9a37fdfe168d354a51b915d01b8837c51394358347d35483f530eb"; + version = "0.11"; + sha256 = "c4caf2e063fb1b4edce5e9959b64bcc899f39b46d82a624974efa98f008a19c1"; libraryHaskellDepends = [ base containers deepseq derive mtl QuickCheck template-haskell th-expand-syns transformers tree-view @@ -43915,10 +44189,8 @@ self: { }: mkDerivation { pname = "compdata-automata"; - version = "0.9"; - sha256 = "6eba64e2cbb12d2494c9d10bdbe7ccd3d552dec2ced1fcaf41d952ee89329bc2"; - revision = "1"; - editedCabalFile = "f8bda15b8d1d1e56f64c37f39ac8ba1c7bf860c291adad3698041eee68146130"; + version = "0.9.1"; + sha256 = "9e112e485662bf16dc9fa85c6e820366d6c21efbe3cfacfab4539ec9b43698b4"; libraryHaskellDepends = [ base compdata containers projection ]; benchmarkHaskellDepends = [ base compdata containers criterion projection @@ -44114,8 +44386,8 @@ self: { }: mkDerivation { pname = "composite-aeson"; - version = "0.3.0.0"; - sha256 = "c2f48c0e6e4b975b65c64988abcd72890bb1ec428a7e6f3212a58cf379cfd820"; + version = "0.4.1.0"; + sha256 = "631b6fbdfff6026748a5b35b3f5ed8af92c3e70744ebd4d2c8b72c1738077d69"; libraryHaskellDepends = [ aeson aeson-better-errors base composite-base containers contravariant generic-deriving hashable lens profunctors scientific @@ -44132,21 +44404,34 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "composite-aeson-refined" = callPackage + ({ mkDerivation, base, composite-aeson, refined }: + mkDerivation { + pname = "composite-aeson-refined"; + version = "0.4.1.0"; + sha256 = "9310f3a61d962688cf96f1bb659c8775cc7f22c785c4baecc174aace1e9499b4"; + libraryHaskellDepends = [ base composite-aeson refined ]; + homepage = "https://github.com/ConferHealth/composite#readme"; + description = "composite-aeson support for Refined from the refined package"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "composite-base" = callPackage - ({ mkDerivation, base, hspec, lens, monad-control, mtl, QuickCheck - , template-haskell, text, transformers, transformers-base, vinyl + ({ mkDerivation, base, exceptions, hspec, lens, monad-control, mtl + , profunctors, QuickCheck, template-haskell, text, transformers + , transformers-base, vinyl }: mkDerivation { pname = "composite-base"; - version = "0.3.0.0"; - sha256 = "48ec59eb4b27cd57be950f32b59ecfca118a597fcc84da0e466a009cfe411372"; + version = "0.4.1.0"; + sha256 = "89fbb843f616d9247132e79960988e1b3c870299c2ecc36d1b4fd5726260dd9b"; libraryHaskellDepends = [ - base lens monad-control mtl template-haskell text transformers - transformers-base vinyl + base exceptions lens monad-control mtl profunctors template-haskell + text transformers transformers-base vinyl ]; testHaskellDepends = [ - base hspec lens monad-control mtl QuickCheck template-haskell text - transformers transformers-base vinyl + base exceptions hspec lens monad-control mtl profunctors QuickCheck + template-haskell text transformers transformers-base vinyl ]; homepage = "https://github.com/ConferHealth/composite#readme"; description = "Shared utilities for composite-* packages"; @@ -44159,8 +44444,8 @@ self: { }: mkDerivation { pname = "composite-ekg"; - version = "0.3.0.0"; - sha256 = "548f3bd735ca1aad856f3088d37a6d631e264afa3cbd19a9b2918550f1044fda"; + version = "0.4.1.0"; + sha256 = "38b6d15dae3c23ec2766dfbfda3bab28927a3e32749cca1324f0ee6588bf71f5"; libraryHaskellDepends = [ base composite-base ekg ekg-core lens text vinyl ]; @@ -44176,8 +44461,8 @@ self: { }: mkDerivation { pname = "composite-opaleye"; - version = "0.3.0.0"; - sha256 = "cfd8e41e5824044de462aa890051cc3fb283c6417ff35208cec2f5f4618ab251"; + version = "0.4.1.0"; + sha256 = "b3127fcaf7b4a6b7b0f38906957ccff5ca1b658d8e2dfb9b24de872eb37a65c9"; libraryHaskellDepends = [ base bytestring composite-base lens opaleye postgresql-simple product-profunctors profunctors template-haskell text vinyl @@ -44670,6 +44955,23 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "concurrent-output_1_9_0" = callPackage + ({ mkDerivation, ansi-terminal, async, base, directory, exceptions + , process, stm, terminal-size, text, transformers, unix + }: + mkDerivation { + pname = "concurrent-output"; + version = "1.9.0"; + sha256 = "2341d06e2bc51963a4f8d035c7cd7c7e9cf02f3d92001aa5ee586e3f00a64b72"; + libraryHaskellDepends = [ + ansi-terminal async base directory exceptions process stm + terminal-size text transformers unix + ]; + description = "Ungarble output from several threads or commands"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "concurrent-rpc" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -44862,33 +45164,6 @@ self: { "conduit" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, exceptions , hspec, kan-extensions, lifted-base, mmorph, monad-control, mtl - , mwc-random, QuickCheck, resourcet, safe, split, transformers - , transformers-base, vector - }: - mkDerivation { - pname = "conduit"; - version = "1.2.9.1"; - sha256 = "05a4ea49a56ca27cc47b9138ed840b7aaa0176b0d917e06c1626fb940797dffe"; - libraryHaskellDepends = [ - base exceptions lifted-base mmorph monad-control mtl resourcet - transformers transformers-base - ]; - testHaskellDepends = [ - base containers exceptions hspec mtl QuickCheck resourcet safe - split transformers - ]; - benchmarkHaskellDepends = [ - base containers criterion deepseq hspec kan-extensions mwc-random - transformers vector - ]; - homepage = "http://github.com/snoyberg/conduit"; - description = "Streaming data processing library"; - license = stdenv.lib.licenses.mit; - }) {}; - - "conduit_1_2_10" = callPackage - ({ mkDerivation, base, containers, criterion, deepseq, exceptions - , hspec, kan-extensions, lifted-base, mmorph, monad-control, mtl , mwc-random, primitive, QuickCheck, resourcet, safe, split , transformers, transformers-base, vector }: @@ -44911,7 +45186,6 @@ self: { homepage = "http://github.com/snoyberg/conduit"; description = "Streaming data processing library"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "conduit-audio" = callPackage @@ -45314,6 +45588,24 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "config-schema" = callPackage + ({ mkDerivation, base, config-value, containers, free + , kan-extensions, pretty, semigroupoids, text, transformers + }: + mkDerivation { + pname = "config-schema"; + version = "0.3.0.0"; + sha256 = "a8542100682159fed8c8bfdd75c8f7a9c9783a20cb106fc387b803866ac3393c"; + libraryHaskellDepends = [ + base config-value containers free kan-extensions pretty + semigroupoids text transformers + ]; + testHaskellDepends = [ base config-value text ]; + homepage = "https://github.com/glguy/config-schema"; + description = "Schema definitions for the config-value package"; + license = stdenv.lib.licenses.isc; + }) {}; + "config-select" = callPackage ({ mkDerivation, base, directory, filepath, unix, vty-menu }: mkDerivation { @@ -45334,8 +45626,8 @@ self: { ({ mkDerivation, alex, array, base, happy, pretty, text }: mkDerivation { pname = "config-value"; - version = "0.5"; - sha256 = "2a2d825c1f23516c64d5ca6b587951b80be44006c09832177e61cfc0743692fa"; + version = "0.6"; + sha256 = "99b10d45d53bcfbe51060d4d7c74ccbf18475e746011471ec35930968a85a141"; libraryHaskellDepends = [ array base pretty text ]; libraryToolDepends = [ alex happy ]; homepage = "https://github.com/glguy/config-value"; @@ -45347,10 +45639,8 @@ self: { ({ mkDerivation, base, config-value, text }: mkDerivation { pname = "config-value-getopt"; - version = "0.1.0.0"; - sha256 = "00b65bcf60b26f7004665f183d7114dfb6380230c2f50e093403ca8a74bfaccb"; - revision = "1"; - editedCabalFile = "bcabc9ce380b21989fc45664b654c2cf1474bd3dc4caa1a7961f8d1181fbd49b"; + version = "0.1.1.0"; + sha256 = "8c2c48abbb47c18f62248d91ebb4c7b50fb343504bdd17a6c60def132847ef7a"; libraryHaskellDepends = [ base config-value text ]; homepage = "https://github.com/GaloisInc/config-value-getopt"; description = "Interface between config-value and System.GetOpt"; @@ -47040,6 +47330,32 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "courier_0_1_1_5" = callPackage + ({ mkDerivation, async, base, bytestring, cereal, containers + , directory, hslogger, HUnit, network, stm, test-framework + , test-framework-hunit, text, uuid + }: + mkDerivation { + pname = "courier"; + version = "0.1.1.5"; + sha256 = "ac9e674ff33de347b173da2892859b3807a408b341d10d6101d2a7d07ac334d3"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + async base bytestring cereal containers hslogger network stm text + uuid + ]; + executableHaskellDepends = [ base cereal ]; + testHaskellDepends = [ + async base cereal containers directory hslogger HUnit network stm + test-framework test-framework-hunit + ]; + homepage = "http://github.com/hargettp/courier"; + description = "A message-passing library for simplifying network applications"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "court" = callPackage ({ mkDerivation, aeson, base, bytestring, directory, filepath , old-locale, optparse-applicative, process, stm, text, time, unix @@ -47701,6 +48017,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "crdt" = callPackage + ({ mkDerivation, base, derive, QuickCheck, tasty, tasty-quickcheck + , vector + }: + mkDerivation { + pname = "crdt"; + version = "0.1"; + sha256 = "86de73b5c2f2c597de3203c7724ae9a73bb2db6b6d67daac24137c3a05b19880"; + libraryHaskellDepends = [ base vector ]; + testHaskellDepends = [ + base derive QuickCheck tasty tasty-quickcheck vector + ]; + homepage = "https://github.com/cblp/crdt#readme"; + description = "Conflict-free replicated data types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "creatur" = callPackage ({ mkDerivation, array, base, binary, bytestring, cereal, cond , directory, exceptions, filepath, gray-extended, hdaemonize @@ -47757,8 +48090,8 @@ self: { }: mkDerivation { pname = "credentials"; - version = "0.0.1.1"; - sha256 = "e9febd40fa2e4c551423ad9d7e323b2d10b1dc0dd56e551612e210f1e16a1e15"; + version = "0.0.2"; + sha256 = "cd5701533100e99cd3e74e77d51d39b11de959db5d6a1a450ee891cadf3bc388"; libraryHaskellDepends = [ aeson amazonka amazonka-core amazonka-dynamodb amazonka-kms base bytestring conduit cryptonite exceptions lens memory retry @@ -47779,10 +48112,8 @@ self: { }: mkDerivation { pname = "credentials-cli"; - version = "0.0.1.1"; - sha256 = "9abcaf0cbbb5e523d4ceeadff677844c5af668a5374a78ee5a004101fea90d70"; - revision = "1"; - editedCabalFile = "b64b55d3e9904385ed1f18bcf5e60baa7d8e06aeec6f29c8b9b1a9fc62a2f219"; + version = "0.0.2"; + sha256 = "d194b8252baec919de4e0f66578db47b28a3cec82bc4ddb68006b5054e627980"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -48012,6 +48343,23 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) protobuf;}; + "crjdt-haskell" = callPackage + ({ mkDerivation, base, containers, free, hedgehog, hspec, mtl, text + }: + mkDerivation { + pname = "crjdt-haskell"; + version = "0.2.1"; + sha256 = "1e1381bd4d7e3dd5fd95fd9d9697538c4a11342a607346f65cd666bb9875b435"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base containers free mtl text ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base containers hedgehog hspec mtl ]; + homepage = "https://github.com/amarpotghan/crjdt-haskell#readme"; + description = "A Conflict-Free Replicated JSON Datatype for Haskell"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "crockford" = callPackage ({ mkDerivation, base, digits, QuickCheck, safe }: mkDerivation { @@ -48686,20 +49034,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "cryptonite_0_22" = callPackage - ({ mkDerivation, base, bytestring, deepseq, ghc-prim, integer-gmp - , memory, tasty, tasty-hunit, tasty-kat, tasty-quickcheck + "cryptonite_0_23" = callPackage + ({ mkDerivation, base, bytestring, criterion, deepseq, foundation + , ghc-prim, integer-gmp, memory, random, tasty, tasty-hunit + , tasty-kat, tasty-quickcheck }: mkDerivation { pname = "cryptonite"; - version = "0.22"; - sha256 = "4be312a42a12ccd2ca60272ef485664f242c7ed89fa1909ba36a54c5fb6ff5f0"; + version = "0.23"; + sha256 = "ee4a1c2cec13f3697a2a35255022fe802b2e29cd836b280702f2495b5f6f0099"; libraryHaskellDepends = [ - base bytestring deepseq ghc-prim integer-gmp memory + base bytestring deepseq foundation ghc-prim integer-gmp memory ]; testHaskellDepends = [ base bytestring memory tasty tasty-hunit tasty-kat tasty-quickcheck ]; + benchmarkHaskellDepends = [ + base bytestring criterion memory random + ]; homepage = "https://github.com/haskell-crypto/cryptonite"; description = "Cryptography Primitives sink"; license = stdenv.lib.licenses.bsd3; @@ -48747,6 +49099,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) openssl;}; + "cryptonite-openssl_0_6" = callPackage + ({ mkDerivation, base, bytestring, cryptonite, memory, openssl + , tasty, tasty-hunit, tasty-kat, tasty-quickcheck + }: + mkDerivation { + pname = "cryptonite-openssl"; + version = "0.6"; + sha256 = "a8cb97c96bfb3e7b7ff8d59629317882dbf3cea12ba978d8475c96a6c28750a6"; + libraryHaskellDepends = [ base bytestring cryptonite memory ]; + librarySystemDepends = [ openssl ]; + testHaskellDepends = [ + base bytestring cryptonite tasty tasty-hunit tasty-kat + tasty-quickcheck + ]; + homepage = "https://github.com/haskell-crypto/cryptonite-openssl"; + description = "Crypto stuff using OpenSSL cryptographic library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) openssl;}; + "cryptsy-api" = callPackage ({ mkDerivation, aeson, base, bytestring, deepseq, either , http-client, http-client-tls, old-locale, pipes-attoparsec @@ -49207,17 +49579,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "cubicbezier_0_6_0_0" = callPackage + "cubicbezier_0_6_0_3" = callPackage ({ mkDerivation, base, containers, fast-math, integration, matrices , microlens, microlens-mtl, microlens-th, mtl, parsec, tasty , tasty-hunit, vector, vector-space }: mkDerivation { pname = "cubicbezier"; - version = "0.6.0.0"; - sha256 = "3265ad631316aaba8854f4fbb6cc7f680e4b6a91b58216f88b818d128bbb2b24"; - revision = "1"; - editedCabalFile = "4023405ed972ab01de3edd95f9cbf996d9b33be26f35efeb8a287c5fdb8503a7"; + version = "0.6.0.3"; + sha256 = "565ec57de9962efe8e357becd6d35e07389ef9c8565fb67925ccd5ba9c947315"; libraryHaskellDepends = [ base containers fast-math integration matrices microlens microlens-mtl microlens-th mtl vector vector-space @@ -49619,6 +49989,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "czipwith" = callPackage + ({ mkDerivation, base, template-haskell, transformers }: + mkDerivation { + pname = "czipwith"; + version = "1.0.0.0"; + sha256 = "45a2af0fd73f4cb7968c382465d8c5c6f4807d195d85e5b35bccef8f5e7c2ce1"; + libraryHaskellDepends = [ base template-haskell ]; + testHaskellDepends = [ base transformers ]; + homepage = "https://github.com/lspitzner/czipwith/"; + description = "CZipWith class and deriving via TH"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "d-bus" = callPackage ({ mkDerivation, async, attoparsec, base, binary, blaze-builder , bytestring, conduit, conduit-extra, containers @@ -50741,6 +51124,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "data-dword_0_3_1_1" = callPackage + ({ mkDerivation, base, data-bword, ghc-prim, hashable, tasty + , tasty-quickcheck, template-haskell + }: + mkDerivation { + pname = "data-dword"; + version = "0.3.1.1"; + sha256 = "f77cd3c4cad022a7d229f96511fbd88eb8b0f2c9a40b67dc8c971dbd3d18fa35"; + libraryHaskellDepends = [ + base data-bword ghc-prim hashable template-haskell + ]; + testHaskellDepends = [ base tasty tasty-quickcheck ]; + homepage = "https://github.com/mvv/data-dword"; + description = "Stick two binary words together to get a bigger one"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "data-easy" = callPackage ({ mkDerivation, base, containers, directory, errors , haskell-src-exts, hlint, hspec, HUnit, QuickCheck, safe, text @@ -50799,6 +51200,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "data-emoticons" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "data-emoticons"; + version = "0.1.0"; + sha256 = "016ea335c6ccf77bdf44ac25a23b77cd2f66db0976e48318b50f46783add2e2f"; + libraryHaskellDepends = [ base ]; + description = "Combinator emoticons: data-aviary in the flavor of emoticons"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "data-endian" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -50956,6 +51368,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "data-forest" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "data-forest"; + version = "0.1.0.3"; + sha256 = "d0dfc0b7684d48ef988ccaed3f27b735f71a7beae7fd3803ffb50317422faa44"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + homepage = "https://github.com/chris-martin/haskell-libraries"; + description = "A simple multi-way tree data structure"; + license = stdenv.lib.licenses.asl20; + }) {}; + "data-fresh" = callPackage ({ mkDerivation, base, free, transformers }: mkDerivation { @@ -51204,6 +51629,18 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "data-list-zigzag" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "data-list-zigzag"; + version = "0.1.1.0"; + sha256 = "3edc697f83a1a958e42cf19ee31e8d95c24086b36c47b3d80ec8412a79eddcdf"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/erisco/data-list-zigzag"; + description = "A list but with a balanced enumeration of Cartesian product"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "data-map-multikey" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -52841,6 +53278,34 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "debug-me" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, cereal, containers + , cryptonite, directory, filepath, graphviz, http-client + , http-client-tls, http-types, memory, mime-mail, network + , network-uri, optparse-applicative, posix-pty, process, protobuf + , sandi, stm, stm-chans, terminal-size, text, time + , unbounded-delays, unix, unordered-containers, utf8-string, uuid + , wai, wai-websockets, warp, websockets + }: + mkDerivation { + pname = "debug-me"; + version = "1.20170509"; + sha256 = "154db83b9720d78ad3a75136925e98f723c20498a6bc74af4fcad995467e2162"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + aeson async base bytestring cereal containers cryptonite directory + filepath graphviz http-client http-client-tls http-types memory + mime-mail network network-uri optparse-applicative posix-pty + process protobuf sandi stm stm-chans terminal-size text time + unbounded-delays unix unordered-containers utf8-string uuid wai + wai-websockets warp websockets + ]; + homepage = "https://debug-me.branchable.com/"; + description = "secure remote debugging"; + license = stdenv.lib.licenses.agpl3; + }) {}; + "debug-time" = callPackage ({ mkDerivation, base, clock, containers }: mkDerivation { @@ -53060,6 +53525,8 @@ self: { pname = "deepseq-generics"; version = "0.2.0.0"; sha256 = "b0b3ef5546c0768ef9194519a90c629f8f2ba0348487e620bb89d512187c7c9d"; + revision = "1"; + editedCabalFile = "023d1de7ad38dc0f72f0e77c7620a036fc632a6ac5c07e9f9229a8834948b514"; libraryHaskellDepends = [ base deepseq ghc-prim ]; testHaskellDepends = [ base deepseq ghc-prim HUnit test-framework test-framework-hunit @@ -53741,11 +54208,11 @@ self: { ({ mkDerivation, base, semigroups, template-haskell }: mkDerivation { pname = "derive-monoid"; - version = "0.0.0"; - sha256 = "d0da3cac1639996e2095ae3058ec32704ec85e2e95d61415d8896090f58255d3"; + version = "0.0.1"; + sha256 = "9974949a0513bc369582d69502f5c34e79b1b60155d3439bb896a2a963e951d1"; isLibrary = true; isExecutable = true; - libraryHaskellDepends = [ base semigroups template-haskell ]; + libraryHaskellDepends = [ base template-haskell ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ base semigroups ]; homepage = "https://github.com/sboosali/derive-monoid#readme"; @@ -54103,6 +54570,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "dhall-check" = callPackage + ({ mkDerivation, base, containers, dhall, directory, filepath + , fsnotify, text, trifecta + }: + mkDerivation { + pname = "dhall-check"; + version = "1.1.0.0"; + sha256 = "0a75aca9dff0eba0bf76bd64c7a6b29ecabe2c4b6260dc736da9b6abadef0a49"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base containers dhall directory filepath fsnotify text trifecta + ]; + homepage = "https://github.com/anfelor/dhall-check#readme"; + description = "Check all dhall files in a project"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "dhall-json" = callPackage ({ mkDerivation, aeson, base, bytestring, dhall, neat-interpolation , optparse-generic, text, trifecta, vector, yaml @@ -54143,6 +54628,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "di" = callPackage + ({ mkDerivation, base, stm, text, time, transformers }: + mkDerivation { + pname = "di"; + version = "0.1"; + sha256 = "883b9a41287b55785b28e207d3ad4af78f3033d2227a895bb497c0b249177e1b"; + revision = "1"; + editedCabalFile = "0c076158efd3cf328a637392d9a1fb4b99e012ab7671db40bb916fdd027bd521"; + libraryHaskellDepends = [ base stm text time transformers ]; + homepage = "https://github.com/k0001/di"; + description = "Easy and powerful typeful logging without monad towers"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "dia-base" = callPackage ({ mkDerivation, base, deepseq }: mkDerivation { @@ -54797,6 +55296,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "dictionaries_0_2_0_1" = callPackage + ({ mkDerivation, attoparsec, base, binary, bytestring, containers + , criterion, data-default, deepseq, directory, exceptions, filepath + , hspec, QuickCheck, random, random-shuffle, tagged, text, time + , transformers, zlib + }: + mkDerivation { + pname = "dictionaries"; + version = "0.2.0.1"; + sha256 = "0a74b9b26ae8f625fb66c81fa58187f8771d95a4721539198f0ef15745877e4b"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + attoparsec base binary bytestring containers data-default deepseq + directory exceptions filepath tagged text time transformers zlib + ]; + executableHaskellDepends = [ + base bytestring containers criterion deepseq directory exceptions + filepath random random-shuffle tagged text transformers + ]; + testHaskellDepends = [ + base bytestring containers directory filepath hspec QuickCheck + random tagged text time + ]; + description = "Tools to handle StarDict dictionaries"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "dictionary-sharing" = callPackage ({ mkDerivation, base, containers }: mkDerivation { @@ -55243,6 +55771,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "dihaa" = callPackage + ({ mkDerivation, base, FontyFruity, JuicyPixels, Rasterific, vector + }: + mkDerivation { + pname = "dihaa"; + version = "0.2.1.2"; + sha256 = "93d6dd6879ee589a6cfcf33c884012a92e8f1fc1d3c37c44a719699cab1c29c6"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base FontyFruity JuicyPixels Rasterific vector + ]; + homepage = "http://sha-bang.de"; + description = "ASCII based Diagram drawing in Haskell (Idea based on ditaa)"; + license = stdenv.lib.licenses.gpl2; + }) {}; + "dimensional" = callPackage ({ mkDerivation, base, criterion, deepseq, exact-pi, HUnit , numtype-dk, vector @@ -55775,8 +56320,8 @@ self: { ({ mkDerivation, base, hspec, primitive, ref-tf, vector }: mkDerivation { pname = "disjoint-set-stateful"; - version = "0.1.0.0"; - sha256 = "addb5ab47b17356cd79fd4232db23c2ef09292cfd4c1ef04f2595416df0132f1"; + version = "0.1.1.0"; + sha256 = "8511e49c5ebb0467c9da86badd0d1564e02e407a3b3dec8a8781e45b62f4833a"; libraryHaskellDepends = [ base primitive ref-tf vector ]; testHaskellDepends = [ base hspec primitive ref-tf vector ]; homepage = "https://github.com/clintonmead/disjoint-set-stateful"; @@ -57029,32 +57574,6 @@ self: { "doctest" = callPackage ({ mkDerivation, base, base-compat, code-page, deepseq, directory - , filepath, ghc, ghc-paths, hspec, HUnit, process, QuickCheck - , setenv, silently, stringbuilder, syb, transformers, with-location - }: - mkDerivation { - pname = "doctest"; - version = "0.11.1"; - sha256 = "5b6ab30f0bf4061707b7bb33445da4c8a00df3e8b3ed04cf7c86f18a6007ad2a"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base base-compat code-page deepseq directory filepath ghc ghc-paths - process syb transformers - ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base base-compat code-page deepseq directory filepath ghc ghc-paths - hspec HUnit process QuickCheck setenv silently stringbuilder syb - transformers with-location - ]; - homepage = "https://github.com/sol/doctest#readme"; - description = "Test interactive Haskell examples"; - license = stdenv.lib.licenses.mit; - }) {}; - - "doctest_0_11_2" = callPackage - ({ mkDerivation, base, base-compat, code-page, deepseq, directory , filepath, ghc, ghc-paths, hspec, HUnit, mockery, process , QuickCheck, setenv, silently, stringbuilder, syb, transformers , with-location @@ -57078,7 +57597,6 @@ self: { homepage = "https://github.com/sol/doctest#readme"; description = "Test interactive Haskell examples"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "doctest-discover" = callPackage @@ -57387,6 +57905,34 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "dotenv_0_3_3_0" = callPackage + ({ mkDerivation, base, base-compat, exceptions, hspec + , hspec-megaparsec, megaparsec, optparse-applicative, process, text + , transformers + }: + mkDerivation { + pname = "dotenv"; + version = "0.3.3.0"; + sha256 = "ef451c16c6d00dd8a51e4ff414a297d93dbe94596d2d0baaa1a5e5e118a3d3d8"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base base-compat exceptions megaparsec text transformers + ]; + executableHaskellDepends = [ + base base-compat megaparsec optparse-applicative process text + transformers + ]; + testHaskellDepends = [ + base base-compat exceptions hspec hspec-megaparsec megaparsec text + transformers + ]; + homepage = "https://github.com/stackbuilders/dotenv-hs"; + description = "Loads environment variables from dotenv files"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "dotfs" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , haskell-src, HFuse, HUnit, parsec, process, QuickCheck @@ -57470,8 +58016,8 @@ self: { }: mkDerivation { pname = "double-extra"; - version = "0.1.0.4"; - sha256 = "f7df3804982a8acb19b774080922b7625209abf14a328b2efaa39df4f6d7b6a0"; + version = "0.1.1"; + sha256 = "ac15190721ab4e005927e7641dafda0e6c2cb2261302bce84e5b7d38993c2523"; libraryHaskellDepends = [ aeson base bytestring cassava deepseq double-conversion rawstring-qm text @@ -58237,6 +58783,37 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "duckling" = callPackage + ({ mkDerivation, aeson, array, attoparsec, base, bytestring + , containers, deepseq, dependent-sum, directory, extra, filepath + , hashable, haskell-src-exts, regex-base, regex-pcre, snap-core + , snap-server, tasty, tasty-hunit, text, text-show, time + , timezone-olson, timezone-series, unordered-containers + }: + mkDerivation { + pname = "duckling"; + version = "0.1.0.0"; + sha256 = "785746f36d9ed14aa74a34a9f0747e1eb039638ca316cf6fb3dba894bc3d009a"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson array attoparsec base bytestring containers deepseq + dependent-sum extra hashable regex-base regex-pcre text text-show + time timezone-series unordered-containers + ]; + executableHaskellDepends = [ + aeson base bytestring directory extra filepath haskell-src-exts + snap-core snap-server text text-show time timezone-olson + timezone-series unordered-containers + ]; + testHaskellDepends = [ + aeson base tasty tasty-hunit text time unordered-containers + ]; + homepage = "https://github.com/facebookincubator/duckling#readme"; + description = "A Haskell library for parsing text into structured data"; + license = "unknown"; + }) {}; + "dump" = callPackage ({ mkDerivation, base, haskell-src-meta, hspec , interpolatedstring-perl6, QuickCheck, template-haskell, text @@ -58504,6 +59081,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {d3dx9 = null;}; + "dyckword" = callPackage + ({ mkDerivation, ansi-terminal, base, exact-combinatorics, hspec + , text + }: + mkDerivation { + pname = "dyckword"; + version = "0.1.0.4"; + sha256 = "79650055db94f8d4600f02d66db5d3fd88fc9976f3ee41d6d84b82e1806f04a4"; + libraryHaskellDepends = [ base exact-combinatorics text ]; + testHaskellDepends = [ ansi-terminal base hspec text ]; + homepage = "https://github.com/johanneshilden/dyckword#readme"; + description = "A library for working with binary Dyck words"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "dynamic-cabal" = callPackage ({ mkDerivation, base, containers, data-default, directory, doctest , filepath, ghc, ghc-paths, haskell-generate, haskell-src-exts @@ -59683,25 +60275,6 @@ self: { }: mkDerivation { pname = "ekg"; - version = "0.4.0.12"; - sha256 = "f30e8c1e76410c3c76ec8cf59f0e1a381a83d302c02b5a95049238aa50eb9844"; - libraryHaskellDepends = [ - aeson base bytestring ekg-core ekg-json filepath network snap-core - snap-server text time transformers unordered-containers - ]; - homepage = "https://github.com/tibbe/ekg"; - description = "Remote monitoring of processes"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "ekg_0_4_0_13" = callPackage - ({ mkDerivation, aeson, base, bytestring, ekg-core, ekg-json - , filepath, network, snap-core, snap-server, text, time - , transformers, unordered-containers - }: - mkDerivation { - pname = "ekg"; version = "0.4.0.13"; sha256 = "44b1d5987e8d8061aaf05fd96f9072399ba16b07999caf5186e856c7e47bb48f"; libraryHaskellDepends = [ @@ -59844,21 +60417,6 @@ self: { }: mkDerivation { pname = "ekg-json"; - version = "0.1.0.4"; - sha256 = "6afc7c146e4891824bb672af94ef3cade56ebf17cc51a3ca9ffdd2ce4345e479"; - libraryHaskellDepends = [ - aeson base ekg-core text unordered-containers - ]; - homepage = "https://github.com/tibbe/ekg-json"; - description = "JSON encoding of ekg metrics"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "ekg-json_0_1_0_5" = callPackage - ({ mkDerivation, aeson, base, ekg-core, text, unordered-containers - }: - mkDerivation { - pname = "ekg-json"; version = "0.1.0.5"; sha256 = "0cd5ecae57a156a5c779acff70d0fa3b02c52cb05283c0effb62a2902ebe8556"; libraryHaskellDepends = [ @@ -59867,7 +60425,6 @@ self: { homepage = "https://github.com/tibbe/ekg-json"; description = "JSON encoding of ekg metrics"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ekg-log" = callPackage @@ -59970,24 +60527,6 @@ self: { }: mkDerivation { pname = "ekg-wai"; - version = "0.1.0.0"; - sha256 = "48a7e64ac613caf2eea1db79a20785d66552ea0f6943941468b0b6e44dfa7798"; - libraryHaskellDepends = [ - aeson base bytestring ekg-core ekg-json filepath http-types network - text time transformers unordered-containers wai wai-app-static warp - ]; - homepage = "https://github.com/tvh/ekg-wai"; - description = "Remote monitoring of processes"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "ekg-wai_0_1_0_1" = callPackage - ({ mkDerivation, aeson, base, bytestring, ekg-core, ekg-json - , filepath, http-types, network, text, time, transformers - , unordered-containers, wai, wai-app-static, warp - }: - mkDerivation { - pname = "ekg-wai"; version = "0.1.0.1"; sha256 = "b814937bfaadf3d53172fb1f7e9b7f8a21799e1d7ce5247974e71e2ccf2c7493"; libraryHaskellDepends = [ @@ -59997,7 +60536,6 @@ self: { homepage = "https://github.com/tvh/ekg-wai"; description = "Remote monitoring of processes"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "electrum-mnemonic" = callPackage @@ -60438,8 +60976,8 @@ self: { }: mkDerivation { pname = "elocrypt"; - version = "0.6.0"; - sha256 = "5804d0012a1d4cc648b4b4881d1c7627ba6798765cb2ed9f04615519098dc36e"; + version = "1.0.0"; + sha256 = "ccec3b38d8b80bd7ff6450701c6a1ba199ae42bba7d7e6623e02d39c64fefc4e"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base MonadRandom random ]; @@ -60867,6 +61405,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "engine-io_1_2_16" = callPackage + ({ mkDerivation, aeson, async, attoparsec, base, base64-bytestring + , bytestring, either, free, monad-loops, mwc-random, stm, stm-delay + , text, transformers, unordered-containers, vector, websockets + }: + mkDerivation { + pname = "engine-io"; + version = "1.2.16"; + sha256 = "de705a46c37bbb0b21e19b70ecd0bc0d647ccdbb03514bc5e9f77cdce94f65c0"; + libraryHaskellDepends = [ + aeson async attoparsec base base64-bytestring bytestring either + free monad-loops mwc-random stm stm-delay text transformers + unordered-containers vector websockets + ]; + homepage = "http://github.com/ocharles/engine.io"; + description = "A Haskell implementation of Engine.IO"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "engine-io-growler" = callPackage ({ mkDerivation, base, bytestring, engine-io, growler, http-types , mtl, pipes, pipes-attoparsec, pipes-wai, socket-io, text @@ -60993,26 +61551,47 @@ self: { }) {}; "enumerate" = callPackage - ({ mkDerivation, array, base, containers, deepseq, doctest - , ghc-prim, template-haskell, vinyl + ({ mkDerivation, array, base, containers, deepseq, ghc-prim, spiros + , template-haskell, vinyl }: mkDerivation { pname = "enumerate"; - version = "0.2.1"; - sha256 = "94a61aa2c25ef3ad6f3ccb7edd9899bfac771b11f138428d15d9c27a52c04f10"; + version = "0.2.2"; + sha256 = "6118e432610acad38927bb3445bc962fd40c45c2825fda67b812dff18b92c588"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - array base containers deepseq ghc-prim template-haskell vinyl + array base containers deepseq ghc-prim spiros template-haskell + vinyl ]; executableHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest ]; homepage = "https://github.com/sboosali/enumerate"; description = "enumerate all the values in a finite type (automatically)"; license = stdenv.lib.licenses.mit; hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "enumerate-function" = callPackage + ({ mkDerivation, base, containers, criterion, deepseq, doctest + , enumerate, exceptions, hspec, MemoTrie, QuickCheck, semigroups + }: + mkDerivation { + pname = "enumerate-function"; + version = "0.0.1"; + sha256 = "fd26862703d317da7ed600369c8decee4e339feb4ff4fddb93b61ae1e436c032"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers deepseq enumerate exceptions MemoTrie semigroups + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest hspec QuickCheck ]; + benchmarkHaskellDepends = [ base criterion deepseq ]; + homepage = "http://github.com/sboosali/enumerate-function#readme"; + description = "simple package for inverting functions and testing totality, via brute enumeration of the domain"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "enumeration" = callPackage ({ mkDerivation, arith-encode, arithmoi, base, binary, Cabal , containers, heap, HUnit-Plus @@ -61185,21 +61764,6 @@ self: { }: mkDerivation { pname = "envelope"; - version = "0.2.1.0"; - sha256 = "af8a043b4a1890e927ecc23827c2018d816071cd2cc5344543287897457276fe"; - libraryHaskellDepends = [ aeson base http-api-data mtl text ]; - testHaskellDepends = [ base doctest Glob ]; - homepage = "https://github.com/cdepillabout/envelope#readme"; - description = "Defines generic 'Envelope' type to wrap reponses from a JSON API"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "envelope_0_2_2_0" = callPackage - ({ mkDerivation, aeson, base, doctest, Glob, http-api-data, mtl - , text - }: - mkDerivation { - pname = "envelope"; version = "0.2.2.0"; sha256 = "cf4d6fe3f906e859ec3c16684a8dafb349e77f0fa4f21b7090ca33e707867ef9"; libraryHaskellDepends = [ aeson base http-api-data mtl text ]; @@ -61207,7 +61771,6 @@ self: { homepage = "https://github.com/cdepillabout/envelope#readme"; description = "Defines generic 'Envelope' type to wrap reponses from a JSON API"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "envparse" = callPackage @@ -61770,6 +62333,33 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ersatz_0_4" = callPackage + ({ mkDerivation, array, attoparsec, base, bytestring, Cabal + , cabal-doctest, containers, data-default, directory, doctest + , filepath, lens, mtl, parsec, process, temporary, transformers + , unordered-containers + }: + mkDerivation { + pname = "ersatz"; + version = "0.4"; + sha256 = "8e9d11bb90e191eae3a4f4fc4a332ac5e0e4fb996889030c46a2ecb5db38739c"; + isLibrary = true; + isExecutable = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + array attoparsec base bytestring containers data-default lens mtl + process temporary transformers unordered-containers + ]; + executableHaskellDepends = [ + array base containers lens mtl parsec + ]; + testHaskellDepends = [ array base directory doctest filepath mtl ]; + homepage = "http://github.com/ekmett/ersatz"; + description = "A monad for expressing SAT or QSAT problems using observable sharing"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ersatz-toysat" = callPackage ({ mkDerivation, array, base, containers, ersatz, toysolver , transformers @@ -62034,8 +62624,8 @@ self: { }: mkDerivation { pname = "ether"; - version = "0.4.1.0"; - sha256 = "4790c6a8d2f81fcda1dd037bd89e4183d215417f0f3228b6f3dee5a2be139d30"; + version = "0.4.2.0"; + sha256 = "2e03b1f897780af4d012657e7209568a48941f1313d56700b2b1346ca006795e"; libraryHaskellDepends = [ base exceptions mmorph monad-control mtl template-haskell transformers transformers-base transformers-lift @@ -62048,6 +62638,36 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ether_0_5_0_0" = callPackage + ({ mkDerivation, base, criterion, deepseq, exceptions, ghc-prim + , lens, mmorph, monad-control, mtl, QuickCheck, reflection, tagged + , tasty, tasty-quickcheck, template-haskell, transformers + , transformers-base, transformers-lift, writer-cps-mtl + }: + mkDerivation { + pname = "ether"; + version = "0.5.0.0"; + sha256 = "cee27d3d697de46be906553022e748477bbc60412901ae190d0ab64ad788f27a"; + revision = "1"; + editedCabalFile = "a58e537c5e544c0054c4baf64ac4bb8ecac4d1e285d0a6738a764e4183d36b50"; + libraryHaskellDepends = [ + base exceptions mmorph monad-control mtl reflection tagged + template-haskell transformers transformers-base transformers-lift + writer-cps-mtl + ]; + testHaskellDepends = [ + base ghc-prim lens mtl QuickCheck tasty tasty-quickcheck + transformers + ]; + benchmarkHaskellDepends = [ + base criterion deepseq lens mtl transformers + ]; + homepage = "https://int-index.github.io/ether/"; + description = "Monad transformers and classes"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ethereum-analyzer" = callPackage ({ mkDerivation, base, bimap, bytestring, containers , ethereum-analyzer-deps, extra, fgl, graphviz, hexstring, hoopl @@ -62055,8 +62675,8 @@ self: { }: mkDerivation { pname = "ethereum-analyzer"; - version = "1.0.3"; - sha256 = "c4144ad2572957cbd33d3c03c6eb68707b31e2e029741cbeb3b530237a6da8a1"; + version = "1.3.0"; + sha256 = "a163f72dad9c13ca6309f04a29f0c2ecf2b59b5c5e3f2acbd720c0ce1a4f31a3"; libraryHaskellDepends = [ base bimap bytestring containers ethereum-analyzer-deps extra fgl graphviz hexstring hoopl text @@ -62067,50 +62687,52 @@ self: { homepage = "https://github.com/ethereumK/ethereum-analyzer"; description = "A Ethereum contract analyzer"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ethereum-analyzer-cli" = callPackage ({ mkDerivation, aeson, base, bytestring, conduit-combinators , directory, ethereum-analyzer, ethereum-analyzer-deps, exceptions , hexstring, hflags, http-conduit, json-rpc, monad-logger, mtl - , text, unordered-containers, vector + , protolude, text, tostring, unordered-containers, vector }: mkDerivation { pname = "ethereum-analyzer-cli"; - version = "1.0.3"; - sha256 = "8cd1c6e8e694147b97fcb1ed9f07442018c66dd91b736756b94ae1d5b4810b17"; + version = "1.3.0"; + sha256 = "cc00a9d155f683596e484f1f872923cceca2fd0236ad97a077ba113acddb782d"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base bytestring conduit-combinators ethereum-analyzer-deps - exceptions hexstring http-conduit json-rpc text + aeson base bytestring conduit-combinators directory + ethereum-analyzer ethereum-analyzer-deps exceptions hexstring + http-conduit json-rpc monad-logger mtl protolude text tostring unordered-containers vector ]; executableHaskellDepends = [ - base directory ethereum-analyzer ethereum-analyzer-deps hflags - monad-logger mtl text + base ethereum-analyzer-deps hflags monad-logger protolude ]; homepage = "https://github.com/ethereumK/ethereum-analyzer"; description = "A CLI frontend for ethereum-analyzer"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ethereum-analyzer-deps" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, base, base16-bytestring , binary, bytestring, containers, deepseq, fast-logger, global-lock - , monad-logger, nibblestring, split, text + , monad-logger, split, text }: mkDerivation { pname = "ethereum-analyzer-deps"; - version = "0.0.1"; - sha256 = "2b83d2f3e13d2d85d6662df3c9469e834b9f02d60b737e94a94802ab0c8c7b71"; + version = "1.3.0"; + sha256 = "3e86a81365a8b7fd1b02cf1074a3a9a0cadfdc451513df1932b5821294495180"; libraryHaskellDepends = [ aeson ansi-wl-pprint base base16-bytestring binary bytestring - containers deepseq fast-logger global-lock monad-logger - nibblestring split text + containers deepseq fast-logger global-lock monad-logger split text ]; description = "Stripped dependencies of ethereum-analyzer"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ethereum-analyzer-webui" = callPackage @@ -62123,8 +62745,8 @@ self: { }: mkDerivation { pname = "ethereum-analyzer-webui"; - version = "1.0.3"; - sha256 = "487dcbd54fbc52682c51e9f52aa98a49e1cb369dad50bb29b2b9a1a94f0f900a"; + version = "1.3.0"; + sha256 = "a12ad88e3fad8d7763f2cca074432c543991b0fb96c1acf25f1317e1c97ad739"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -62140,6 +62762,7 @@ self: { homepage = "https://github.com/ethereumK/ethereum-analyzer"; description = "A web frontend for ethereum-analyzer"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ethereum-client-haskell" = callPackage @@ -62421,14 +63044,160 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "eventful-core" = callPackage + ({ mkDerivation, aeson, base, containers, hlint, hspec + , http-api-data, HUnit, path-pieces, template-haskell, text + , transformers, uuid + }: + mkDerivation { + pname = "eventful-core"; + version = "0.1.1"; + sha256 = "ea7d123dd9510d72f651b4197cbc35d34dd4d737b4e567fc1f16571518c64583"; + libraryHaskellDepends = [ + aeson base containers http-api-data path-pieces template-haskell + text transformers uuid + ]; + testHaskellDepends = [ + aeson base containers hlint hspec http-api-data HUnit path-pieces + template-haskell text transformers uuid + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "Core module for eventful"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-dynamodb" = callPackage + ({ mkDerivation, aeson, amazonka, amazonka-dynamodb, base + , bytestring, conduit, eventful-core, eventful-test-helpers, hlint + , hspec, HUnit, lens, QuickCheck, quickcheck-instances, safe, text + , unordered-containers, vector + }: + mkDerivation { + pname = "eventful-dynamodb"; + version = "0.1.1"; + sha256 = "3431f60159b7c7dc6b3994c5fd3aa87e48d43cf54ea499d07b363cf79b39cc91"; + libraryHaskellDepends = [ + aeson amazonka amazonka-dynamodb base bytestring conduit + eventful-core lens safe text unordered-containers vector + ]; + testHaskellDepends = [ + aeson amazonka amazonka-dynamodb base bytestring conduit + eventful-core eventful-test-helpers hlint hspec HUnit lens + QuickCheck quickcheck-instances safe text unordered-containers + vector + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "Library for eventful DynamoDB event stores"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-memory" = callPackage + ({ mkDerivation, async, base, containers, eventful-core + , eventful-test-helpers, hlint, hspec, HUnit, mtl, safe, stm + }: + mkDerivation { + pname = "eventful-memory"; + version = "0.1.1"; + sha256 = "efd3b19092571ac0d669f511da8c2f5559277255f6f783de5473669c388442e6"; + libraryHaskellDepends = [ + async base containers eventful-core mtl safe stm + ]; + testHaskellDepends = [ + async base containers eventful-core eventful-test-helpers hlint + hspec HUnit mtl safe stm + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "In-memory implementations for eventful"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-postgresql" = callPackage + ({ mkDerivation, aeson, base, bytestring, eventful-core + , eventful-sql-common, eventful-test-helpers, hlint, hspec, HUnit + , mtl, persistent, persistent-postgresql, text + }: + mkDerivation { + pname = "eventful-postgresql"; + version = "0.1.1"; + sha256 = "9a2adf281dad1040204303dae81d3bfcf620626c54f6337209b24b1860da2c92"; + libraryHaskellDepends = [ + aeson base bytestring eventful-core eventful-sql-common mtl + persistent persistent-postgresql text + ]; + testHaskellDepends = [ + aeson base bytestring eventful-core eventful-sql-common + eventful-test-helpers hlint hspec HUnit mtl persistent + persistent-postgresql text + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "Postgres implementations for eventful"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-sql-common" = callPackage + ({ mkDerivation, aeson, base, bytestring, eventful-core, mtl + , persistent, persistent-template, split, text, uuid + }: + mkDerivation { + pname = "eventful-sql-common"; + version = "0.1.1"; + sha256 = "60a1bcc0643a088697856a4962ee0ab99e65fd69ef1e598f5ab981c6c98866f6"; + libraryHaskellDepends = [ + aeson base bytestring eventful-core mtl persistent + persistent-template split text uuid + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "Common library for SQL event stores"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-sqlite" = callPackage + ({ mkDerivation, aeson, base, bytestring, eventful-core + , eventful-sql-common, eventful-test-helpers, hlint, hspec, HUnit + , mtl, persistent, persistent-sqlite, text, uuid + }: + mkDerivation { + pname = "eventful-sqlite"; + version = "0.1.1"; + sha256 = "e4ebd1e761f60e1cadd033f44070fab21c96c43e923c2b22f292c96cd0dcdc2e"; + libraryHaskellDepends = [ + aeson base bytestring eventful-core eventful-sql-common mtl + persistent persistent-sqlite text uuid + ]; + testHaskellDepends = [ + aeson base bytestring eventful-core eventful-sql-common + eventful-test-helpers hlint hspec HUnit mtl persistent + persistent-sqlite text uuid + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "SQLite implementations for eventful"; + license = stdenv.lib.licenses.mit; + }) {}; + + "eventful-test-helpers" = callPackage + ({ mkDerivation, aeson, aeson-casing, base, eventful-core, extra + , hspec, monad-logger + }: + mkDerivation { + pname = "eventful-test-helpers"; + version = "0.1.1"; + sha256 = "2fe935a290a66f7ecc5a52c33df06b1aa75e90fdf4212c4aa68c584b6a654356"; + libraryHaskellDepends = [ + aeson aeson-casing base eventful-core extra hspec monad-logger + ]; + homepage = "https://github.com/jdreaver/eventful#readme"; + description = "Common module used for eventful tests"; + license = stdenv.lib.licenses.mit; + }) {}; + "eventloop" = callPackage ({ mkDerivation, aeson, base, bytestring, concurrent-utilities , deepseq, network, stm, suspend, text, timers, websockets }: mkDerivation { pname = "eventloop"; - version = "0.8.2.3"; - sha256 = "5867c9f778f0947301cddd83cd940f08daa2689b9a5bac3cc268806fde08cf2b"; + version = "0.8.2.4"; + sha256 = "42fe6785d6c9d2eec13d909d4b49614c9c3059b11dd7e8560dbeaf504edbff07"; libraryHaskellDepends = [ aeson base bytestring concurrent-utilities deepseq network stm suspend text timers websockets @@ -62445,8 +63214,8 @@ self: { }: mkDerivation { pname = "eventsource-api"; - version = "1.0.2"; - sha256 = "d97fc24411bb872084ad41b2113070c8b576b3a055ed918e7880993c5fd64107"; + version = "1.1.0"; + sha256 = "a9c79ab3819ecf883be88d2ac9a1465c564bdb580eebcecf18e92e2a3eba0d4e"; libraryHaskellDepends = [ aeson base containers mtl protolude unordered-containers uuid ]; @@ -62462,8 +63231,8 @@ self: { }: mkDerivation { pname = "eventsource-geteventstore-store"; - version = "1.0.0"; - sha256 = "d14e33e0f73d2c6344d251253cd9f29551dd08ed627fa9b68845ac8e236dbafb"; + version = "1.0.1"; + sha256 = "d0da118c13356cfb15b83a175fca6f703f382650ead2606209499425dade07a6"; libraryHaskellDepends = [ aeson base eventsource-api eventstore mtl protolude ]; @@ -62499,8 +63268,8 @@ self: { }: mkDerivation { pname = "eventsource-stub-store"; - version = "1.0.0"; - sha256 = "6c50fd40a886098fb95f129d4769b68ffe3ffdb9135234d4db921ff6f5d17fef"; + version = "1.0.1"; + sha256 = "f3a0e17be29259a7a38a6666f7e3cb51df005165ffd87a3bf1cee8fea6f7d54e"; libraryHaskellDepends = [ base containers eventsource-api mtl protolude stm ]; @@ -62542,8 +63311,8 @@ self: { }: mkDerivation { pname = "eventstore"; - version = "0.14.0.1"; - sha256 = "0daf1e7c51405053cbcb35ab53f8b1eaaa4e937b985c49762e9e6814f9b380d0"; + version = "0.14.0.2"; + sha256 = "6681fa07999b6c6ee7445b5244467caf6a1e476501dea8fb6674a3326ce776f3"; libraryHaskellDepends = [ aeson array base cereal classy-prelude connection containers dns dotnet-timespan http-client mtl protobuf random semigroups stm time @@ -62560,6 +63329,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "every" = callPackage + ({ mkDerivation, async, base, stm }: + mkDerivation { + pname = "every"; + version = "0.0.1"; + sha256 = "5d0ff0e4cefb094c44b55defa283146b16b925722a2eb244a5ef4364737980e5"; + libraryHaskellDepends = [ async base stm ]; + homepage = "https://github.com/athanclark/every#readme"; + description = "Run a process every so often"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "every-bit-counts" = callPackage ({ mkDerivation, base, haskell98 }: mkDerivation { @@ -62622,6 +63403,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "exact-cover" = callPackage + ({ mkDerivation, base, containers, tasty, tasty-hunit }: + mkDerivation { + pname = "exact-cover"; + version = "0.1.0.0"; + sha256 = "e4e7077a009391fe2156b16651d731561c6cab9c774717dff272941473c8d662"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base containers ]; + testHaskellDepends = [ base containers tasty tasty-hunit ]; + homepage = "https://github.com/arthurl/exact-cover"; + description = "Efficient exact cover solver"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "exact-pi" = callPackage ({ mkDerivation, base, numtype-dk }: mkDerivation { @@ -62703,8 +63499,8 @@ self: { }: mkDerivation { pname = "exception-monads-tf"; - version = "0.4"; - sha256 = "0fa6b5abb40ae3b1cb8664cd955ec37d7ff17e73ccddacdeebbc5bf2806a2a4d"; + version = "0.4.0.1"; + sha256 = "4443f16b64d34d21b6bd609e3ad605cccf89277b9990e6226283e7ccc952c1f1"; libraryHaskellDepends = [ base exception-transformers monads-tf transformers ]; @@ -62880,6 +63676,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "exhaustive_1_1_4" = callPackage + ({ mkDerivation, base, generics-sop, template-haskell, transformers + }: + mkDerivation { + pname = "exhaustive"; + version = "1.1.4"; + sha256 = "746a3ac9454e307063150d25136eabf6573d045c2e92bf627eaf7031132e870b"; + libraryHaskellDepends = [ + base generics-sop template-haskell transformers + ]; + homepage = "http://github.com/ocharles/exhaustive"; + description = "Compile time checks that a computation considers producing data through all possible constructors"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "exherbo-cabal" = callPackage ({ mkDerivation, ansi-wl-pprint, base, bytestring, Cabal , containers, data-default, deepseq, directory, doctest, filepath @@ -63455,6 +64267,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "extensible-sp" = callPackage + ({ mkDerivation, base, lens }: + mkDerivation { + pname = "extensible-sp"; + version = "0.1.0.0"; + sha256 = "268bb4397b00d44f13095a7632447fd47a5f0c38aebb71c2acbe05f2f4cea168"; + libraryHaskellDepends = [ base lens ]; + homepage = "https://github.com/githubuser/extensible-sp#readme"; + description = "light-weight, extensible sums and products over types and kinds"; + license = stdenv.lib.licenses.mit; + }) {}; + "external-sort" = callPackage ({ mkDerivation, base, binary, bytestring, EdisonAPI, EdisonCore }: mkDerivation { @@ -63508,6 +64332,18 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "extractable-singleton" = callPackage + ({ mkDerivation, base, transformers }: + mkDerivation { + pname = "extractable-singleton"; + version = "0.0.1"; + sha256 = "e8da1928d98c57ef3d1bab7deb1378f51fa496721495777233663dd0b1b2c0ad"; + libraryHaskellDepends = [ base transformers ]; + homepage = "https://github.com/athanclark/extractable-singleton#readme"; + description = "A functor, where the \"stored\" value is isomorphic to Identity"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "extractelf" = callPackage ({ mkDerivation, base, bytestring, bytestring-mmap, directory, elf , filepath, optparse-applicative @@ -64119,8 +64955,8 @@ self: { pname = "fay"; version = "0.23.1.16"; sha256 = "c46ef8cb7980bcf62ef7ccc9897e9c4246e6bec8cafc06d49ebe1d5bcd618a64"; - revision = "4"; - editedCabalFile = "efe4614bc8832765c649a86b4e4a8c26122af3a5a23cad77676e062e3a85f66c"; + revision = "6"; + editedCabalFile = "2190f49533cd4256613bea999deb0a56284447801f994dc50161bd3791285aff"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -64414,8 +65250,8 @@ self: { pname = "fclabels"; version = "2.0.3.2"; sha256 = "4d5d83ffc3c8bc610e9c42e19c2e07a1ca68666310261de15703c605047182b0"; - revision = "1"; - editedCabalFile = "9e2c00e02216a9ba54f4798c9c68e88b0b94440e9ebd583d126404e8f7fe8c90"; + revision = "2"; + editedCabalFile = "993d8010ec3fe451febfee64dc653588c0d6ed86d1c902d3af01acc290665d3a"; libraryHaskellDepends = [ base mtl template-haskell transformers ]; testHaskellDepends = [ base HUnit mtl template-haskell transformers @@ -65088,6 +65924,7 @@ self: { ]; description = "update statically hosted file in a push stule through socketed"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "fields" = callPackage @@ -65623,10 +66460,8 @@ self: { ({ mkDerivation, base, deepseq }: mkDerivation { pname = "finite-typelits"; - version = "0.1.1.0"; - sha256 = "40cbe752fa659fdebd5afeb7a15177746b08227cf6add085481b94f53f8c858b"; - revision = "1"; - editedCabalFile = "4c5ae66b960dcede29688c32b9fb0d839a4bfb53bcde8e13f6a62b7f4fd55b4f"; + version = "0.1.2.0"; + sha256 = "3c52230d439724357d0c2b817223bb43d3a417e241b99f3ef58ab9dd838b1527"; libraryHaskellDepends = [ base deepseq ]; homepage = "https://github.com/mniip/finite-typelits"; description = "A type inhabited by finitely many values, indexed by type-level naturals"; @@ -66397,6 +67232,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "flight-igc" = callPackage + ({ mkDerivation, base, cmdargs, directory, filemanip, filepath + , hlint, mtl, parsec, raw-strings-qq, system-filepath, transformers + }: + mkDerivation { + pname = "flight-igc"; + version = "0.1.0"; + sha256 = "b49fb55aad039256377fcc2280519553171ff5c141da8f5e06f1dfca612f22b3"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base parsec ]; + executableHaskellDepends = [ + base cmdargs directory filemanip filepath mtl raw-strings-qq + system-filepath transformers + ]; + testHaskellDepends = [ base hlint ]; + homepage = "https://github.com/BlockScope/haskell-flight-igc#readme"; + description = "A parser for IGC files"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "flippers" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -66869,8 +67725,8 @@ self: { }: mkDerivation { pname = "fmt"; - version = "0.1.0.0"; - sha256 = "94153a2e1aa613e8ab77eaa9fbc4723697b4cb4351f2383bc649290c2cbac495"; + version = "0.2.0.0"; + sha256 = "90dfc7b7fdc59d832d13b62a857ba27282b5a24af2affbb7f11be678d6e4e4f9"; libraryHaskellDepends = [ base base16-bytestring base64-bytestring bytestring containers microlens text text-format @@ -66996,6 +67852,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "foldl_1_2_5" = callPackage + ({ mkDerivation, base, bytestring, comonad, containers + , contravariant, criterion, hashable, mwc-random, primitive + , profunctors, text, transformers, unordered-containers, vector + }: + mkDerivation { + pname = "foldl"; + version = "1.2.5"; + sha256 = "aa2d5c3cfb8641163dcdd489e9e0fe481301e94c0e3940fc9e234f8e1b00ec4b"; + libraryHaskellDepends = [ + base bytestring comonad containers contravariant hashable + mwc-random primitive profunctors text transformers + unordered-containers vector + ]; + benchmarkHaskellDepends = [ base criterion ]; + description = "Composable, streaming, and efficient left folds"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "foldl-incremental" = callPackage ({ mkDerivation, base, bytestring, containers, criterion, deepseq , foldl, histogram-fill, mwc-random, pipes, QuickCheck, tasty @@ -67092,23 +67968,26 @@ self: { }) {}; "folds" = callPackage - ({ mkDerivation, adjunctions, base, bifunctors, comonad - , constraints, contravariant, data-reify, distributive, lens, mtl - , pointed, profunctors, reflection, semigroupoids, transformers - , unordered-containers, vector + ({ mkDerivation, adjunctions, base, bifunctors, bytestring, Cabal + , cabal-doctest, comonad, constraints, contravariant, data-reify + , deepseq, directory, distributive, doctest, filepath, lens, mtl + , pointed, profunctors, reflection, semigroupoids, semigroups + , transformers, unordered-containers, vector }: mkDerivation { pname = "folds"; - version = "0.7.1"; - sha256 = "e07adf0c9834b5f78180250d7fec6a56ba84c752cbe4c991d52efc6c60b7d25a"; - revision = "1"; - editedCabalFile = "1ef82fedd12e9e46055436c3bfa5992f595c08ca986012dc301fd76f0bcaf05f"; + version = "0.7.3"; + sha256 = "e7c5cba85f8d7df8aa45503e735a8e9c27e409f5841540b79f087508599c0a09"; configureFlags = [ "-f-test-hlint" ]; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ adjunctions base bifunctors comonad constraints contravariant data-reify distributive lens mtl pointed profunctors reflection semigroupoids transformers unordered-containers vector ]; + testHaskellDepends = [ + base bytestring deepseq directory doctest filepath mtl semigroups + ]; homepage = "http://github.com/ekmett/folds"; description = "Beautiful Folding"; license = stdenv.lib.licenses.bsd3; @@ -67361,8 +68240,8 @@ self: { }: mkDerivation { pname = "forest"; - version = "0.1"; - sha256 = "4de243b4eddddc534881617c6335e0658496ad67c2ebc65ba148b2965fe64460"; + version = "0.1.1.1"; + sha256 = "177b321ada64b8f396b643c1e9ada0e721ec7a02d408dda65d522a88e1fb243c"; libraryHaskellDepends = [ aeson base bifunctors deepseq hashable profunctors semigroupoids ]; @@ -67400,6 +68279,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "forma" = callPackage + ({ mkDerivation, aeson, base, containers, data-default-class, hspec + , mtl, text, unordered-containers + }: + mkDerivation { + pname = "forma"; + version = "0.1.0"; + sha256 = "4ae9efb4ca4bc806e8d700ad2532d17a3002b532e5fb05fab7d3582842de5881"; + revision = "2"; + editedCabalFile = "c25110d939fd9d46b4d647c2f4965ec4b2ceb676da97dd0f8b9d7055d018be03"; + libraryHaskellDepends = [ + aeson base containers data-default-class mtl text + unordered-containers + ]; + testHaskellDepends = [ aeson base hspec mtl text ]; + homepage = "https://github.com/mrkkrp/forma"; + description = "Parse and validate forms in JSON format"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "formal" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, containers , directory, file-embed, HTTP, indents, interpolatedstring-perl6 @@ -67704,8 +68603,10 @@ self: { }: mkDerivation { pname = "foundation"; - version = "0.0.6"; - sha256 = "9f0a2e9823146e7d13d1a11522446d43e110d80bde4937214107415f593c0222"; + version = "0.0.8"; + sha256 = "0898e294758ba835c3be4693bf7533b7af20a178a925e67009ae5d892abcc9bb"; + revision = "1"; + editedCabalFile = "f0b53e59bf5eb4f0c8d7896c8b98940ed5a15aba49b186bb2a5949932a3efd34"; libraryHaskellDepends = [ base ghc-prim ]; testHaskellDepends = [ base mtl QuickCheck tasty tasty-hunit tasty-quickcheck @@ -67717,16 +68618,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "foundation_0_0_7" = callPackage + "foundation_0_0_9" = callPackage ({ mkDerivation, base, criterion, ghc-prim, mtl, QuickCheck, tasty , tasty-hunit, tasty-quickcheck }: mkDerivation { pname = "foundation"; - version = "0.0.7"; - sha256 = "6b4e2ed9920a47ef7cbfe015f502695f707694f54e4febea6d296b6c08dda49b"; - revision = "1"; - editedCabalFile = "28e6ea019acf74e5800bebd14ba601086541f227f46682277e5ab469d767aa88"; + version = "0.0.9"; + sha256 = "db9672c17b79d3c5e620aaba6699c6707fa647cb54961d1ac147d980f2255196"; libraryHaskellDepends = [ base ghc-prim ]; testHaskellDepends = [ base mtl QuickCheck tasty tasty-hunit tasty-quickcheck @@ -67739,12 +68638,12 @@ self: { }) {}; "foundation-edge" = callPackage - ({ mkDerivation, base, bytestring, foundation }: + ({ mkDerivation, bytestring, foundation, text }: mkDerivation { pname = "foundation-edge"; - version = "0.0.1"; - sha256 = "8451eff606d689409ba70109a2fc6744ac849c56c0207a47275a4fadcf6ba257"; - libraryHaskellDepends = [ base bytestring foundation ]; + version = "0.0.2"; + sha256 = "e1e4295ebf93bbf2478fe9b1204f4ca15e1bcdd55e0bffae598cd68714e1acb5"; + libraryHaskellDepends = [ bytestring foundation text ]; homepage = "https://github.com/haskell-foundation/foundation-edge"; description = "foundation's edge with the conventional set of packages"; license = stdenv.lib.licenses.bsd3; @@ -68303,6 +69202,7 @@ self: { homepage = "https://github.com/chrisdone/freenect"; description = "Interface to the Kinect device"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) freenect; freenect_sync = null; libfreenect = null;}; @@ -68329,27 +69229,6 @@ self: { }) {}; "freer-effects" = callPackage - ({ mkDerivation, base, criterion, free, hlint, mtl, QuickCheck - , tasty, tasty-hunit, tasty-quickcheck - }: - mkDerivation { - pname = "freer-effects"; - version = "0.3.0.0"; - sha256 = "06b67cabe8141468a0bc55d6f39918fd0a037992e760411d116a36a22586d57f"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ base ]; - executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base hlint QuickCheck tasty tasty-hunit tasty-quickcheck - ]; - benchmarkHaskellDepends = [ base criterion free mtl ]; - homepage = "https://github.com/IxpertaSolutions/freer-effects"; - description = "Implementation of effect system for Haskell"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "freer-effects_0_3_0_1" = callPackage ({ mkDerivation, base, criterion, free, mtl, QuickCheck, tasty , tasty-hunit, tasty-quickcheck }: @@ -68368,7 +69247,6 @@ self: { homepage = "https://github.com/IxpertaSolutions/freer-effects"; description = "Implementation of effect system for Haskell"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "freesect" = callPackage @@ -68433,8 +69311,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "freetype2"; - version = "0.1.1"; - sha256 = "da18f9d3047277ba47e162dafa0b2a4777bfb6157b39ad91f9e808ba36f65e99"; + version = "0.1.2"; + sha256 = "517e80298890e903b03134d7840d3d1a517bfdad53127ed57c2fdd18cbfae302"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base ]; @@ -68685,6 +69563,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "frpnow-gtk3" = callPackage + ({ mkDerivation, base, containers, frpnow, glib, gtk3, mtl, text }: + mkDerivation { + pname = "frpnow-gtk3"; + version = "0.2.0"; + sha256 = "e065a5ef7227c2ebc74c63eade6004adaaa9f99bcc2f88e44b17485f0bcab786"; + libraryHaskellDepends = [ + base containers frpnow glib gtk3 mtl text + ]; + homepage = "https://github.com/george-steel/frpnow-gtk3"; + description = "Program GUIs with GTK3 and frpnow!"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "frquotes" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -68712,6 +69604,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "fsh-csv" = callPackage + ({ mkDerivation, base, hint }: + mkDerivation { + pname = "fsh-csv"; + version = "0.2.0.0"; + sha256 = "15b93aff8ad23fd78b471bea83df25d970ec0997310df83e1485e9872fc11bd2"; + libraryHaskellDepends = [ base hint ]; + description = "csv parser for fsh"; + license = stdenv.lib.licenses.mit; + }) {}; + "fsharp" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -68909,17 +69812,17 @@ self: { }) {}; "ftphs" = callPackage - ({ mkDerivation, base, hslogger, MissingH, mtl, network, parsec - , regex-compat + ({ mkDerivation, base, bytestring, hslogger, MissingH, mtl, network + , parsec, regex-compat }: mkDerivation { pname = "ftphs"; - version = "1.0.9.1"; - sha256 = "ce0b05b2fc7f93a6195184ed1a8edee69a7a9cf4aa3d15ebeb25421715571bf2"; + version = "1.0.9.2"; + sha256 = "f90fdbf1c8f633c15e5536167c282ba1c08eca5e44dd790890afee8929d357c6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base hslogger MissingH mtl network parsec regex-compat + base bytestring hslogger MissingH mtl network parsec regex-compat ]; homepage = "http://software.complete.org/ftphs"; description = "FTP Client and Server Library"; @@ -69210,6 +70113,8 @@ self: { pname = "functor-classes-compat"; version = "1"; sha256 = "ef11f94f44a74d6657ee61dcd2cfbc6d0889d233a2fb4caae6a29d9c59a1366f"; + revision = "1"; + editedCabalFile = "14c1e7fd585522284429b627efea55737f0e536edc9e0d9e7fa00810805f7411"; libraryHaskellDepends = [ base containers hashable unordered-containers vector ]; @@ -69238,8 +70143,8 @@ self: { ({ mkDerivation, base, template-haskell }: mkDerivation { pname = "functor-infix"; - version = "0.0.4"; - sha256 = "2dac64ec872867c2365dd6318388c27da561f34ab285852ffba89965d15525d7"; + version = "0.0.5"; + sha256 = "f62ea7341afe0f77794966d451bdd203e82efeef9e8aa9760847e05f6ea82e66"; libraryHaskellDepends = [ base template-haskell ]; homepage = "https://github.com/fmap/functor-infix"; description = "Infix operators for mapping over compositions of functors. Lots of them."; @@ -69542,6 +70447,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "fx" = callPackage + ({ mkDerivation, base, base-prelude, transformers }: + mkDerivation { + pname = "fx"; + version = "0.7"; + sha256 = "8c7a2dbffec34d5ef827f4c2dea951260728684f3d89f90c526dcbf4bdd49784"; + libraryHaskellDepends = [ base base-prelude transformers ]; + homepage = "https://github.com/nikita-volkov/fx"; + description = "Horizontally composable effects"; + license = stdenv.lib.licenses.mit; + }) {}; + "g-npm" = callPackage ({ mkDerivation, base, HTTP, json }: mkDerivation { @@ -69724,13 +70641,14 @@ self: { }) {}; "gc" = callPackage - ({ mkDerivation, base, directory, doctest, filepath, hlint - , parallel + ({ mkDerivation, base, Cabal, cabal-doctest, directory, doctest + , filepath, hlint, parallel }: mkDerivation { pname = "gc"; - version = "0"; - sha256 = "0a699181d365bcec3e0da537a595c62ccf6d3a9df8865cb2ac5279421d6e9bcb"; + version = "0.0.1"; + sha256 = "61f5a1c4da66d2aef183fd0c79b58b35a0aff7c5bb8b2eba93a15d69430a5f96"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base directory doctest filepath hlint parallel @@ -70159,10 +71077,8 @@ self: { }: mkDerivation { pname = "generic-aeson"; - version = "0.2.0.8"; - sha256 = "de29fa648b9eb6c9e678b0715a530efaf70aac8f1ad8becc22d7ef1411ded5cb"; - revision = "3"; - editedCabalFile = "ed9572e401789a0bff470b31f6cb127e77a43a831ba07b5eb5705a3b770d2263"; + version = "0.2.0.9"; + sha256 = "34c13f91ffa72a1f6d7f43b84fdd19b20db547045eb6164a4119f9a95dcd84cb"; libraryHaskellDepends = [ aeson attoparsec base generic-deriving mtl tagged text unordered-containers vector @@ -70460,23 +71376,25 @@ self: { }) {}; "generics-sop" = callPackage - ({ mkDerivation, base, ghc-prim, template-haskell }: + ({ mkDerivation, base, deepseq, ghc-prim, template-haskell }: mkDerivation { pname = "generics-sop"; - version = "0.2.4.0"; - sha256 = "481f73f122970efc24fe9dea71077e265d260834d975dd41395671d9a86a1863"; - libraryHaskellDepends = [ base ghc-prim template-haskell ]; + version = "0.2.5.0"; + sha256 = "f3977cfd6c3e21555393294b2be2b8fd23729f9224828418208d06da65d34ddc"; + libraryHaskellDepends = [ base deepseq ghc-prim template-haskell ]; testHaskellDepends = [ base ]; description = "Generic Programming using True Sums of Products"; license = stdenv.lib.licenses.bsd3; }) {}; - "generics-sop_0_2_5_0" = callPackage + "generics-sop_0_3_0_0" = callPackage ({ mkDerivation, base, deepseq, ghc-prim, template-haskell }: mkDerivation { pname = "generics-sop"; - version = "0.2.5.0"; - sha256 = "f3977cfd6c3e21555393294b2be2b8fd23729f9224828418208d06da65d34ddc"; + version = "0.3.0.0"; + sha256 = "03bcd0c46fdd126496f7b8eec25890a9ee888d09b65adb097501f7b93acf913a"; + revision = "1"; + editedCabalFile = "35a799ef954413d448a3e8451725b0b886240591cac1a456322f0253aa55d57e"; libraryHaskellDepends = [ base deepseq ghc-prim template-haskell ]; testHaskellDepends = [ base ]; description = "Generic Programming using True Sums of Products"; @@ -70490,6 +71408,8 @@ self: { pname = "generics-sop-lens"; version = "0.1.2.1"; sha256 = "4e49d4cc580d45e25e0abdeee12b1191ae75937af1c7ca03333979584a8a525c"; + revision = "1"; + editedCabalFile = "ee28830436813f3dd34669dd59d4dac3bb3d52241f6d12b562c2d76e49734d67"; libraryHaskellDepends = [ base generics-sop lens ]; homepage = "https://github.com/phadej/generics-sop-lens#readme"; description = "Lenses for types in generics-sop"; @@ -70508,6 +71428,54 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "genesis" = callPackage + ({ mkDerivation, base, directory, envparse, file-embed, filepath + , hspec, monad-control, monad-logger, monad-persist, persistent + , persistent-postgresql, persistent-sqlite, persistent-template + , resource-pool, template-haskell, text, text-conversions + }: + mkDerivation { + pname = "genesis"; + version = "0.0.1.0"; + sha256 = "4c93cb53fd0b7f8def666984500cbc063279ae501929377efc1dbb485c1e8296"; + libraryHaskellDepends = [ + base directory envparse file-embed filepath monad-control + monad-logger monad-persist persistent persistent-postgresql + persistent-template resource-pool template-haskell text + text-conversions + ]; + testHaskellDepends = [ + base hspec monad-control monad-logger monad-persist + persistent-sqlite persistent-template text + ]; + homepage = "https://github.com/cjdev/genesis#readme"; + description = "Opinionated bootstrapping for Haskell web services"; + license = stdenv.lib.licenses.isc; + }) {}; + + "genesis-test" = callPackage + ({ mkDerivation, base, envparse, genesis, hspec, hspec-expectations + , lifted-base, monad-control, monad-logger, monad-persist + , persistent-postgresql, persistent-template, text + , transformers-base + }: + mkDerivation { + pname = "genesis-test"; + version = "0.0.1.0"; + sha256 = "427e095a40747725116e08253aed44102e9d7807dfc3de2f2b868c00c0db408b"; + libraryHaskellDepends = [ + base genesis hspec hspec-expectations lifted-base monad-control + monad-logger monad-persist persistent-postgresql transformers-base + ]; + testHaskellDepends = [ + base envparse genesis hspec monad-logger monad-persist + persistent-template text + ]; + homepage = "https://github.com/cjdev/genesis#readme"; + description = "Opinionated bootstrapping for Haskell web services"; + license = stdenv.lib.licenses.isc; + }) {}; + "genetics" = callPackage ({ mkDerivation, base, random-fu }: mkDerivation { @@ -70618,8 +71586,8 @@ self: { ({ mkDerivation, base, mtl, template-haskell }: mkDerivation { pname = "geniplate-mirror"; - version = "0.7.4"; - sha256 = "1bbfc296d598d604e0cf4da0b4a23e36e73f019f83b7911e18621443f04e2c5f"; + version = "0.7.5"; + sha256 = "519b913dac8f56d5b0d93c15881cae63f759270540c634e6f845a31084be729f"; libraryHaskellDepends = [ base mtl template-haskell ]; homepage = "https://github.com/danr/geniplate"; description = "Use Template Haskell to generate Uniplate-like functions"; @@ -70826,6 +71794,7 @@ self: { homepage = "https://github.com/NorfairKing/validity"; description = "Standard spec's for Hashable instances"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "genvalidity-path" = callPackage @@ -71135,8 +72104,8 @@ self: { }: mkDerivation { pname = "getopt-generics"; - version = "0.13"; - sha256 = "d193384dca0c9fdd8492ee888b1b8954b247f83ead6e4f3f81ded94377aaa34a"; + version = "0.13.0.1"; + sha256 = "6902d7e366dea566f533be6b40ce219b010f1e9fcbc089285da3d4ecca524e83"; libraryHaskellDepends = [ base base-compat base-orphans generics-sop tagged ]; @@ -71439,6 +72408,30 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "ghc-exactprint_0_5_3_1" = callPackage + ({ mkDerivation, base, bytestring, containers, Diff, directory + , filemanip, filepath, free, ghc, ghc-boot, ghc-paths, HUnit, mtl + , silently, syb + }: + mkDerivation { + pname = "ghc-exactprint"; + version = "0.5.3.1"; + sha256 = "54f2b83a8643e25654e4dfaf236938021e37c82e22d589d45ffb43aef2483772"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers directory filepath free ghc ghc-boot + ghc-paths mtl syb + ]; + testHaskellDepends = [ + base bytestring containers Diff directory filemanip filepath ghc + ghc-boot ghc-paths HUnit mtl silently syb + ]; + description = "ExactPrint for GHC"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ghc-gc-tune" = callPackage ({ mkDerivation, base, directory, filepath, process }: mkDerivation { @@ -72217,14 +73210,19 @@ self: { }) {}; "ghcjs-dom-hello" = callPackage - ({ mkDerivation, base, ghcjs-dom, mtl }: + ({ mkDerivation, base, ghcjs-dom, jsaddle-warp, jsaddle-webkit2gtk + , mtl + }: mkDerivation { pname = "ghcjs-dom-hello"; - version = "4.0.0.0"; - sha256 = "c4ce7931a8121f7f3c78df896af8449eeca4fd11abdd90b4fa338fa207da6c6d"; - isLibrary = false; + version = "5.0.0.0"; + sha256 = "ea5e6392ec9a3e4450e2728cbd444f9b69e8bead6ae69a4b0ed8dcd4d56add6c"; + isLibrary = true; isExecutable = true; - executableHaskellDepends = [ base ghcjs-dom mtl ]; + libraryHaskellDepends = [ base ghcjs-dom mtl ]; + executableHaskellDepends = [ + base ghcjs-dom jsaddle-warp jsaddle-webkit2gtk mtl + ]; homepage = "https://github.com/ghcjs/ghcjs-dom-hello"; description = "GHCJS DOM Hello World, an example package"; license = stdenv.lib.licenses.mit; @@ -72452,8 +73450,8 @@ self: { }: mkDerivation { pname = "gi-atk"; - version = "2.0.11"; - sha256 = "32594ce32ab70fcf7b7e4d2fd212a4714c72d28776be7649f88a989b40632d9b"; + version = "2.0.12"; + sha256 = "1326ab0a7aa7ea89f0aeae0f1120692f04f056c891458b56d5cc909b1ef525b4"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject haskell-gi @@ -72472,8 +73470,8 @@ self: { }: mkDerivation { pname = "gi-cairo"; - version = "1.0.11"; - sha256 = "a70bbb9b120d10c95e1bc603511d542b38cecf1025bed870e6dbe2bd2d7e552f"; + version = "1.0.12"; + sha256 = "13253ec1aa2ae9a4b57617e43cd54df95d2e6e83d2f3942eee8ccc855d602be0"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers haskell-gi haskell-gi-base text @@ -72497,8 +73495,8 @@ self: { }: mkDerivation { pname = "gi-gdk"; - version = "3.0.11"; - sha256 = "b1947f5abad3e500ac748ccea44275050c8a7261d0f81e49aee21a4266cf34b1"; + version = "3.0.12"; + sha256 = "d8185f9e0c5dff01b40e9080ecebe21c3422ec7138c4e3b9721fe82217f02de6"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-cairo gi-gdkpixbuf gi-gio gi-glib @@ -72519,8 +73517,8 @@ self: { }: mkDerivation { pname = "gi-gdkpixbuf"; - version = "2.0.11"; - sha256 = "068c4e9df68a03180dc0f174414af010877ffc781d35d2776e01a63bd1a80149"; + version = "2.0.12"; + sha256 = "f925cc99ae9b12df1cdc6229526d31854128eacfa53f5dda1abfec9ec979b84f"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gio gi-glib gi-gobject haskell-gi @@ -72539,8 +73537,8 @@ self: { }: mkDerivation { pname = "gi-gio"; - version = "2.0.11"; - sha256 = "d63f1c32a935cb818f8f2c1d70dbf4f71cc65a23e200744a93dee66ade50f039"; + version = "2.0.12"; + sha256 = "e64bad35ed0340456bcd0aa41960ad3c695fedd13f4a2ed1f7387fdafd65568d"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject haskell-gi @@ -72560,8 +73558,8 @@ self: { }: mkDerivation { pname = "gi-girepository"; - version = "1.0.11"; - sha256 = "3779ee7c9e97a96b05f43607adbde81addf0451b0a1f21e94a9a4353cec1fde2"; + version = "1.0.12"; + sha256 = "a8064418b5e7742dea49a935066a617bfeb658788358061c312206768bc97eb9"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gobject haskell-gi haskell-gi-base @@ -72581,8 +73579,8 @@ self: { }: mkDerivation { pname = "gi-glib"; - version = "2.0.11"; - sha256 = "f707cc142c6c7a202b86a5804af38c53fd74c99ee2092946e3f39451220d94e9"; + version = "2.0.12"; + sha256 = "bd0e08bfaded3279470b510ab010142f490ccfce06cbbaba66e36df524ca6e5d"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers haskell-gi haskell-gi-base text @@ -72601,8 +73599,8 @@ self: { }: mkDerivation { pname = "gi-gobject"; - version = "2.0.11"; - sha256 = "fcfe35af13e118db109b9b0d969b89bb5c2a0162a1c3d1fc9413cafcd173058c"; + version = "2.0.12"; + sha256 = "82110b303cc3118866e1d9ae455393e36e323125e81df6a48bbfd1fbde53a9a5"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib haskell-gi haskell-gi-base text @@ -72622,8 +73620,8 @@ self: { }: mkDerivation { pname = "gi-gst"; - version = "1.0.11"; - sha256 = "36e63c2330cb274ac6ac8b1a5d4b06a590e10d91ed4209555a72a85dc0c2591a"; + version = "1.0.12"; + sha256 = "cb662cfe71ee8a88751cfd93fcd20b110eacc6f2f3897edf6d9cf9aa870b2320"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject haskell-gi @@ -72644,8 +73642,8 @@ self: { }: mkDerivation { pname = "gi-gstaudio"; - version = "1.0.11"; - sha256 = "faca30e17c95fc5fc00e72bbaef20bbb9edf2a4785f6bad6f6b4a742006d2f5d"; + version = "1.0.12"; + sha256 = "7f5cacdc91c935498c2dfb45ef1a671658022dd83ede1e608301c5c126b22daa"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject gi-gst gi-gstbase @@ -72666,8 +73664,8 @@ self: { }: mkDerivation { pname = "gi-gstbase"; - version = "1.0.11"; - sha256 = "ca1cf846609ee3a340161747df48885432304b4a4339d3328d3f8b5e683ff577"; + version = "1.0.12"; + sha256 = "5837b5dcca567251b5b3f5d36d2c5ad44f9983ef384b9296abfc09d304d2df25"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject gi-gst haskell-gi @@ -72688,8 +73686,8 @@ self: { }: mkDerivation { pname = "gi-gstvideo"; - version = "1.0.11"; - sha256 = "9f2b49fc2ee31fb4ee4f2bf82f509a8b9d4dc963eff0da62efa6b60e760f42e7"; + version = "1.0.12"; + sha256 = "ba6febe815fd28b16e9b0234fb58159aede65cf4b84e6f51e98036bc9661296e"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject gi-gst gi-gstbase @@ -72710,8 +73708,8 @@ self: { }: mkDerivation { pname = "gi-gtk"; - version = "3.0.13"; - sha256 = "a5c79de84124785e308b5fc253574bca3130e47b425fb1a7543f3f17505720a2"; + version = "3.0.14"; + sha256 = "40746753292322b681792191fda061a761c4e866a3f46a187b33e7164971be60"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-atk gi-cairo gi-gdk gi-gdkpixbuf @@ -72752,8 +73750,8 @@ self: { }: mkDerivation { pname = "gi-gtkosxapplication"; - version = "2.0.11"; - sha256 = "4d64ad35431052f221a37998b8ca7fa8850a9a98d2741133f64f978b2e3bcad7"; + version = "2.0.12"; + sha256 = "5d0a2b8fda1e7a3c4654b1de3fcde6f53559fa1b0cccc540456c1c6647c0f829"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gdkpixbuf gi-gobject gi-gtk @@ -72775,8 +73773,8 @@ self: { }: mkDerivation { pname = "gi-gtksource"; - version = "3.0.12"; - sha256 = "b7babfb18749b73f32dab35c464f641381b1ebc333cbdd6fe2167825db45476c"; + version = "3.0.13"; + sha256 = "df587a0702afb4c9c00d5bfa6c09f2f90e7047cd07aaaa997b83e4a0f3bfe639"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-atk gi-cairo gi-gdk gi-gdkpixbuf @@ -72797,8 +73795,8 @@ self: { }: mkDerivation { pname = "gi-javascriptcore"; - version = "3.0.11"; - sha256 = "88f288c8e70dace97422b7385f77a4d7f856e4a2f5940abc4d41947ec76bb250"; + version = "3.0.12"; + sha256 = "e67bb9873db3f34d5557a5e3f4bce7e084ee9d05999c3906f1cff28956a1ccf1"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers haskell-gi haskell-gi-base text @@ -72812,14 +73810,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) webkitgtk24x;}; - "gi-javascriptcore_4_0_11" = callPackage + "gi-javascriptcore_4_0_12" = callPackage ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi , haskell-gi-base, text, transformers, webkitgtk }: mkDerivation { pname = "gi-javascriptcore"; - version = "4.0.11"; - sha256 = "d67899269ffeba7fa266644fb6d540c74d36fa9e15ca1890fc2c6bb1fa19e066"; + version = "4.0.12"; + sha256 = "e3adab3a808651a1408d8a1411b8cef32b75a2d05ce511b2b4c1100eec5597f3"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers haskell-gi haskell-gi-base text @@ -72840,8 +73838,8 @@ self: { }: mkDerivation { pname = "gi-notify"; - version = "0.7.11"; - sha256 = "206eaf4d06e5837e21f665212517c27c201e48bb306ea0ea77e05ce9e8d059ce"; + version = "0.7.12"; + sha256 = "66dc0be0ca776069da0e373b7b61b820e02773ce127b79bbe6740df272768965"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gdkpixbuf gi-glib gi-gobject @@ -72862,8 +73860,8 @@ self: { }: mkDerivation { pname = "gi-ostree"; - version = "1.0.1"; - sha256 = "de10141aad3fe918b337743231d86f2dd70e876e6e49de8f4d36ef700d241299"; + version = "1.0.2"; + sha256 = "68e356d442415172191a3c60774219238b0b27a28921098e9f755d74b7623a75"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gio gi-glib gi-gobject haskell-gi @@ -72874,6 +73872,7 @@ self: { homepage = "https://github.com/haskell-gi/haskell-gi"; description = "OSTree bindings"; license = stdenv.lib.licenses.lgpl21; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) ostree;}; "gi-pango" = callPackage @@ -72883,8 +73882,8 @@ self: { }: mkDerivation { pname = "gi-pango"; - version = "1.0.12"; - sha256 = "8a2badc09262448996bc3b4b82d6fdc69b423d4a34d57cdc859c89f8ae74250d"; + version = "1.0.13"; + sha256 = "f42f189b30358e710bef8d25fdd7563ba0b8262d009506d52761bd320256335b"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-glib gi-gobject haskell-gi @@ -72909,8 +73908,8 @@ self: { }: mkDerivation { pname = "gi-pangocairo"; - version = "1.0.12"; - sha256 = "e24214f43c50ecb1077168298bf48e447ddcb80ee8c8452fc02ef04df971a787"; + version = "1.0.13"; + sha256 = "0f9194258b1b822d4bcd89615a4d54689b29a7b9b0a4d4189e352215da65493f"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-cairo gi-glib gi-gobject gi-pango @@ -72935,8 +73934,8 @@ self: { }: mkDerivation { pname = "gi-poppler"; - version = "0.18.11"; - sha256 = "76ec68a35a83c99d3c8fd3374b02b0fede275ced4c21d4c967d817411a8c581b"; + version = "0.18.12"; + sha256 = "f797b1955e2023a05073cc75f36f4faddb122320a14c884d2c762d046152bf11"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-cairo gi-gio gi-glib gi-gobject @@ -72957,8 +73956,8 @@ self: { }: mkDerivation { pname = "gi-secret"; - version = "0.0.1"; - sha256 = "877f0d508b6bcdd46b2e2ab285de6cd96e687f3085c9b2bb7b23600834b29f9a"; + version = "0.0.2"; + sha256 = "ec3fe6061e0dfe73bca0d67ffcfa0b982cea77fdab97587bac69ae74bab7c2a1"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gio gi-glib gi-gobject haskell-gi @@ -72978,8 +73977,8 @@ self: { }: mkDerivation { pname = "gi-soup"; - version = "2.4.11"; - sha256 = "5488104e98b7a295b44990d0063b162c951b8a1eec5df35a42bd4ba828dbd0ad"; + version = "2.4.12"; + sha256 = "275d66016f19bef997dcce9a1dd3bad6b8f7b650243dea8eb57e68a6167b5f12"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gio gi-glib gi-gobject haskell-gi @@ -72999,8 +73998,8 @@ self: { }: mkDerivation { pname = "gi-vte"; - version = "2.91.13"; - sha256 = "4dfce5aefb7e2e8daad8be77f3c64580bd5c1b90287513153f668497308c1b40"; + version = "2.91.14"; + sha256 = "5a20f82ec924a55f57aca1c05806824d88a791df028f39d7ca28a49470487bf7"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-atk gi-gdk gi-gio gi-glib gi-gobject @@ -73022,8 +74021,8 @@ self: { }: mkDerivation { pname = "gi-webkit"; - version = "3.0.11"; - sha256 = "d707c10a9f758d5bee1fe59639fb6773a1fcdb596bc86b46c7ce19639556ff3f"; + version = "3.0.12"; + sha256 = "01d47b73dc867c3b5dd969b9bef9c4a4e998d4899fec5f899ed38aee862e2964"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-atk gi-cairo gi-gdk gi-gdkpixbuf @@ -73046,8 +74045,8 @@ self: { }: mkDerivation { pname = "gi-webkit2"; - version = "4.0.11"; - sha256 = "bc43fb893695cd0395ffdd3381e857d5201e2a7209feb6f6024e0d832219070b"; + version = "4.0.12"; + sha256 = "7f8c3fd5e54ba80edee55b23fa6d200cfb9897353c9366f2ccbfa2f9c81369b0"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-atk gi-cairo gi-gdk gi-gio gi-glib @@ -73069,8 +74068,8 @@ self: { }: mkDerivation { pname = "gi-webkit2webextension"; - version = "4.0.11"; - sha256 = "b16b5b2f54bceaa777c64bb5ed19244815892dafcd8b4ce949c6a858ccf19033"; + version = "4.0.12"; + sha256 = "513fb09b9d9600551c61de1e458f9c508399b4e9c0b6e1fafd32ceb440edca77"; setupHaskellDepends = [ base Cabal haskell-gi ]; libraryHaskellDepends = [ base bytestring containers gi-gobject gi-gtk gi-javascriptcore @@ -73230,29 +74229,6 @@ self: { }: mkDerivation { pname = "gipeda"; - version = "0.3.3.1"; - sha256 = "be7aafd3390c5d498c39482ff862a302c3bf2d7cecdba4940141297728bbb143"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - aeson base bytestring cassava concurrent-output containers - directory extra file-embed filepath gitlib gitlib-libgit2 - scientific shake split tagged text transformers - unordered-containers vector yaml - ]; - homepage = "https://github.com/nomeata/gipeda"; - description = "Git Performance Dashboard"; - license = stdenv.lib.licenses.mit; - }) {}; - - "gipeda_0_3_3_2" = callPackage - ({ mkDerivation, aeson, base, bytestring, cassava - , concurrent-output, containers, directory, extra, file-embed - , filepath, gitlib, gitlib-libgit2, scientific, shake, split - , tagged, text, transformers, unordered-containers, vector, yaml - }: - mkDerivation { - pname = "gipeda"; version = "0.3.3.2"; sha256 = "39c0e0e3b892d37a66c34d741c563bfda9d171f481b4810dbf0697c312ce2d13"; isLibrary = false; @@ -73266,7 +74242,6 @@ self: { homepage = "https://github.com/nomeata/gipeda"; description = "Git Performance Dashboard"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "giphy-api" = callPackage @@ -73381,8 +74356,8 @@ self: { }: mkDerivation { pname = "git-annex"; - version = "6.20170321"; - sha256 = "f86351a99bbfff0285914c4639d2bc68ffcc172a6dacdef164254261cf1f0795"; + version = "6.20170510"; + sha256 = "f85f4e0fb737daeb38bdd420daabaff7862e16bdf4e237d93be28649b7d00512"; configureFlags = [ "-fassistant" "-fcryptonite" "-fdbus" "-fdesktopnotify" "-fdns" "-ffeed" "-finotify" "-fpairing" "-fproduction" "-fquvi" "-fs3" @@ -73416,9 +74391,13 @@ self: { bup curl git gnupg lsof openssh perl rsync wget which ]; preConfigure = "export HOME=$TEMPDIR; patchShebangs ."; - postBuild = "ln -sf dist/build/git-annex/git-annex git-annex"; installPhase = "make PREFIX=$out BUILDER=: install"; - checkPhase = "./git-annex test"; + checkPhase = '' + ln -sf dist/build/git-annex/git-annex git-annex + ln -sf git-annex git-annex-shell + export PATH+=":$PWD" + git-annex test + ''; enableSharedExecutables = false; homepage = "http://git-annex.branchable.com/"; description = "manage files with git, without checking their contents into git"; @@ -73858,28 +74837,6 @@ self: { }: mkDerivation { pname = "github-release"; - version = "1.0.1"; - sha256 = "a0e58b9e855cdf8617ba42436c974776800573951dcf680ec3072651fc10c5b5"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - aeson base bytestring http-client http-client-tls http-types - mime-types optparse-generic text unordered-containers uri-templater - ]; - executableHaskellDepends = [ base ]; - homepage = "https://github.com/tfausak/github-release#readme"; - description = "Upload files to GitHub releases"; - license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "github-release_1_0_2" = callPackage - ({ mkDerivation, aeson, base, bytestring, http-client - , http-client-tls, http-types, mime-types, optparse-generic, text - , unordered-containers, uri-templater - }: - mkDerivation { - pname = "github-release"; version = "1.0.2"; sha256 = "c3bc7318a9497f7b44fda6ed1ac993bd1de72b5f802fb00e2c9e6436a1e8854d"; isLibrary = true; @@ -74365,27 +75322,6 @@ self: { }: mkDerivation { pname = "glabrous"; - version = "0.3.1"; - sha256 = "419c5ec7c93c981ced838d6711e18565883abbb3b229d34a6fc904722e678ec8"; - libraryHaskellDepends = [ - aeson aeson-pretty attoparsec base bytestring cereal cereal-text - either text unordered-containers - ]; - testHaskellDepends = [ - base directory either hspec text unordered-containers - ]; - homepage = "https://github.com/MichelBoucey/glabrous"; - description = "A template DSL library"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "glabrous_0_3_2" = callPackage - ({ mkDerivation, aeson, aeson-pretty, attoparsec, base, bytestring - , cereal, cereal-text, directory, either, hspec, text - , unordered-containers - }: - mkDerivation { - pname = "glabrous"; version = "0.3.2"; sha256 = "39c84b225b4d85b0f662e22f762e3b7e9c8f67c1097f23d0af094be79f09db7f"; libraryHaskellDepends = [ @@ -74398,7 +75334,6 @@ self: { homepage = "https://github.com/MichelBoucey/glabrous"; description = "A template DSL library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "glade" = callPackage @@ -74694,8 +75629,8 @@ self: { }: mkDerivation { pname = "glicko"; - version = "0.1.1.0"; - sha256 = "740b5850982ea36f750c137930bf6e070b365618a547a520fcdab34fd4f913e9"; + version = "0.1.1.1"; + sha256 = "f10ea912c522e26ef5840534cd18a664e265232f8f34af6c9f8460ab30284ac3"; libraryHaskellDepends = [ base containers data-default deepseq lens parallel statistics ]; @@ -74734,24 +75669,25 @@ self: { "glirc" = callPackage ({ mkDerivation, async, attoparsec, base, base64-bytestring - , bytestring, Cabal, config-value, containers, directory, filepath - , gitrev, hashable, hookup, HsOpenSSL, HUnit, irc-core - , kan-extensions, lens, network, process, regex-tdfa, socks, split - , stm, text, time, transformers, unix, unordered-containers, vector - , vty + , bytestring, Cabal, config-schema, config-value, containers + , directory, filepath, gitrev, hashable, hookup, HsOpenSSL, HUnit + , irc-core, kan-extensions, lens, network, process, regex-tdfa + , semigroupoids, socks, split, stm, text, time, transformers, unix + , unordered-containers, vector, vty }: mkDerivation { pname = "glirc"; - version = "2.20.3"; - sha256 = "2c50f79c534a9d350cf956f559041d7d344f5c09586c648ec4284a6093a7aec1"; + version = "2.20.6"; + sha256 = "b119e13c00eab6b28da3fad4f66545d0804299795447f6fdccc41f328a434c20"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal filepath ]; libraryHaskellDepends = [ - async attoparsec base base64-bytestring bytestring config-value - containers directory filepath gitrev hashable hookup HsOpenSSL - irc-core kan-extensions lens network process regex-tdfa socks split - stm text time transformers unix unordered-containers vector vty + async attoparsec base base64-bytestring bytestring config-schema + config-value containers directory filepath gitrev hashable hookup + HsOpenSSL irc-core kan-extensions lens network process regex-tdfa + semigroupoids socks split stm text time transformers unix + unordered-containers vector vty ]; executableHaskellDepends = [ base lens text vty ]; testHaskellDepends = [ base HUnit ]; @@ -75359,8 +76295,8 @@ self: { }: mkDerivation { pname = "gnss-converters"; - version = "0.2.6"; - sha256 = "029d9ec796ae8cb7a1986676ea85552b3f48ddaa0c92dddb49e406cd3129b79f"; + version = "0.2.8"; + sha256 = "47d98848a3c2a13baeaab7ed12a93ced58b97c01c828e5342f73c73a6c181758"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -77802,6 +78738,7 @@ self: { homepage = "https://github.com/brendanhay/gogol"; description = "Google Sheets SDK"; license = "unknown"; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "gogol-sheets_0_2_0" = callPackage @@ -79492,6 +80429,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "graphted" = callPackage + ({ mkDerivation, base, indexed }: + mkDerivation { + pname = "graphted"; + version = "0.3.1.0"; + sha256 = "89190037cd56a3a083c7bd62186d02a282d0319e31c7d00f07ab33fcbcc65678"; + libraryHaskellDepends = [ base indexed ]; + homepage = "https://github.com/aaronfriel/graphted#readme"; + description = "Graph indexed monads"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "graphtype" = callPackage ({ mkDerivation, base, containers, dotgen, haskell-src-exts , haskell98, uniplate @@ -79536,6 +80485,32 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "graphviz_2999_19_0_0" = callPackage + ({ mkDerivation, base, bytestring, colour, containers, criterion + , deepseq, directory, dlist, fgl, fgl-arbitrary, filepath + , polyparse, process, QuickCheck, temporary, text, transformers + , wl-pprint-text + }: + mkDerivation { + pname = "graphviz"; + version = "2999.19.0.0"; + sha256 = "af0a7ff197c9de3f23e6653541446f755c824083ced04b629df6d19523fe04ea"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring colour containers directory dlist fgl filepath + polyparse process temporary text transformers wl-pprint-text + ]; + testHaskellDepends = [ + base containers fgl fgl-arbitrary filepath QuickCheck text + ]; + benchmarkHaskellDepends = [ base criterion deepseq text ]; + homepage = "http://projects.haskell.org/graphviz/"; + description = "Bindings to Graphviz for graph visualisation"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "graql" = callPackage ({ mkDerivation, aeson, base, containers, hspec, markdown-unlit , process, regex-posix, scientific, text @@ -79742,6 +80717,7 @@ self: { benchmarkHaskellDepends = [ base bytestring criterion hmatrix ]; description = "Practical Deep Learning in Haskell"; license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "greplicate" = callPackage @@ -79871,17 +80847,6 @@ self: { ({ mkDerivation, base, haskell-src-exts }: mkDerivation { pname = "groom"; - version = "0.1.2"; - sha256 = "0e820122cad388f31c3ef0815d7ff93b9e95a8fdec0d6c560c379fe0ecfdb010"; - libraryHaskellDepends = [ base haskell-src-exts ]; - description = "Pretty printing for well-behaved Show instances"; - license = stdenv.lib.licenses.publicDomain; - }) {}; - - "groom_0_1_2_1" = callPackage - ({ mkDerivation, base, haskell-src-exts }: - mkDerivation { - pname = "groom"; version = "0.1.2.1"; sha256 = "a6b4a4d3af1b26f63039f04bd4176493f8dd4f6a9ab281f0e33c0151c20de59d"; isLibrary = true; @@ -79890,7 +80855,6 @@ self: { executableHaskellDepends = [ base ]; description = "Pretty printing for well-behaved Show instances"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "gross" = callPackage @@ -79998,26 +80962,6 @@ self: { }: mkDerivation { pname = "groundhog-postgresql"; - version = "0.8"; - sha256 = "78a5acb35b9b1dae9a9076e41db2dde46198b8e8494baaac98c6fdfc64b77f8d"; - libraryHaskellDepends = [ - aeson attoparsec base blaze-builder bytestring containers groundhog - monad-control postgresql-libpq postgresql-simple resource-pool - resourcet text time transformers vector - ]; - description = "PostgreSQL backend for the groundhog library"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "groundhog-postgresql_0_8_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, blaze-builder, bytestring - , containers, groundhog, monad-control, postgresql-libpq - , postgresql-simple, resource-pool, resourcet, text, time - , transformers, vector - }: - mkDerivation { - pname = "groundhog-postgresql"; version = "0.8.0.1"; sha256 = "ad8ef33fb170dc63f97ef2add891d2e20f279f12495a2f56c7086d49c20b95e8"; libraryHaskellDepends = [ @@ -80292,8 +81236,8 @@ self: { }: mkDerivation { pname = "gssapi"; - version = "0.1.0.0"; - sha256 = "72b7c687414bb370ff6a857ddbcfe00a804d3f2e4ca563c0783a68f6f875b0fd"; + version = "0.2.0.0"; + sha256 = "9ecfeba4b0d7aa5d14a82026f2693bb5d6225322915c65ce659bf1510bf07ecf"; libraryHaskellDepends = [ base bytestring resourcet transformers ]; librarySystemDepends = [ gssapi_krb5 krb5 ]; homepage = "https://github.com/ondrap/gssapi"; @@ -80308,8 +81252,8 @@ self: { }: mkDerivation { pname = "gssapi-wai"; - version = "0.1.0.1"; - sha256 = "12ec5a79ae4da85c7117edefc2a6b37790c7d4cf65ae04e89541de7709ee7a8e"; + version = "0.1.2.1"; + sha256 = "9666151c6ca4fbd8d167230cd30c45ae0cc628114e85e4ec8d3a7f4171492259"; libraryHaskellDepends = [ base base64-bytestring bytestring case-insensitive gssapi http-types vault wai wai-extra @@ -80397,13 +81341,13 @@ self: { }: mkDerivation { pname = "gtk-helpers"; - version = "0.0.7"; - sha256 = "671bf6f447083c6a60fb862cd694f3944248167a5291ff58d4f39c9cce1fa433"; + version = "0.0.9.1"; + sha256 = "b1017f768a6db5cccadd7f22c778e55657104e6fefd98b20fac9824f43fd9419"; libraryHaskellDepends = [ array base gio glib gtk mtl process template-haskell ]; homepage = "http://keera.es/blog/community"; - description = "A collection of auxiliary operations and widgets related to Gtk"; + description = "A collection of auxiliary operations and widgets related to Gtk+"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -81034,6 +81978,22 @@ self: { }) {cudd = null; epd = null; inherit (pkgs) mtr; inherit (pkgs) st; util = null;}; + "hCM" = callPackage + ({ mkDerivation, base, hashable, haskell-src }: + mkDerivation { + pname = "hCM"; + version = "0.1.0.0"; + sha256 = "4c520f70cab14412476c1cd5130a747f628522e11dd3059d712cb52b58a1ab39"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base hashable haskell-src ]; + executableHaskellDepends = [ base hashable ]; + testHaskellDepends = [ base hashable ]; + homepage = "https://github.com/MarekSuchanek/hCM"; + description = "Conceptual modelling support for Haskell"; + license = stdenv.lib.licenses.mit; + }) {}; + "hCsound" = callPackage ({ mkDerivation, base, c2hs, csound64, libsndfile, monads-tf , transformers, vector @@ -82722,24 +83682,6 @@ self: { }: mkDerivation { pname = "hailgun"; - version = "0.4.1.2"; - sha256 = "f0b8e11e2a09d0d737620ed46e8029c5679cfe392c47df4be5ee3ba63a114ff1"; - libraryHaskellDepends = [ - aeson base bytestring email-validate exceptions filepath - http-client http-client-tls http-types tagsoup text time - transformers - ]; - description = "Mailgun REST api interface for Haskell"; - license = stdenv.lib.licenses.mit; - }) {}; - - "hailgun_0_4_1_3" = callPackage - ({ mkDerivation, aeson, base, bytestring, email-validate - , exceptions, filepath, http-client, http-client-tls, http-types - , tagsoup, text, time, transformers - }: - mkDerivation { - pname = "hailgun"; version = "0.4.1.3"; sha256 = "57bec1b8be9b2bcf8b87fc84ff6f91a9f75edde7081f79c942cf1b2f73977e74"; libraryHaskellDepends = [ @@ -82749,7 +83691,6 @@ self: { ]; description = "Mailgun REST api interface for Haskell"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hailgun-send" = callPackage @@ -83165,6 +84106,21 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hakyll-favicon" = callPackage + ({ mkDerivation, base, filepath, hakyll }: + mkDerivation { + pname = "hakyll-favicon"; + version = "0.1.0"; + sha256 = "f9844e4e2f8284d2bd3da45ab787d0616c4ac04925b9310b73771f8025ad420a"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base filepath hakyll ]; + executableHaskellDepends = [ base hakyll ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/elaye/hakyll-favicon#README.md"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "hakyll-filestore" = callPackage ({ mkDerivation, base, filestore, hakyll, time, time-locale-compat }: @@ -83389,6 +84345,7 @@ self: { homepage = "https://github.com/timjb/halma"; description = "GTK application for playing Halma"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "halma-telegram-bot" = callPackage @@ -84544,15 +85501,18 @@ self: { }) {}; "happy" = callPackage - ({ mkDerivation, array, base, containers, mtl, process }: + ({ mkDerivation, array, base, Cabal, containers, directory + , filepath, mtl, process + }: mkDerivation { pname = "happy"; version = "1.19.5"; sha256 = "62f03ac11d7b4b9913f212f5aa2eee1087f3b46dc07d799d41e1854ff02843da"; - revision = "1"; - editedCabalFile = "d6a01f50aab2c480799b7d19643c5bb01891e01ac97aa892ffec3e6029a1446c"; + revision = "2"; + editedCabalFile = "fc70418fedcdcf5e235e0eceeee7eeedf485d3833ab312d148cad74f49da70b7"; isLibrary = false; isExecutable = true; + setupHaskellDepends = [ base Cabal directory filepath ]; executableHaskellDepends = [ array base containers mtl ]; testHaskellDepends = [ base process ]; homepage = "http://www.haskell.org/happy/"; @@ -84670,8 +85630,8 @@ self: { }: mkDerivation { pname = "har"; - version = "0.3.0"; - sha256 = "268c183e842194e66a8483cc57c55ccb516d9396ce9d2c16be0495e9b0fbceea"; + version = "0.4.0"; + sha256 = "ff37aeb31502a4ca134beb7dfaa148f3b61bec5c0234f88e58c7b2be400e7abc"; libraryHaskellDepends = [ aeson base bytestring directory filepath text ]; @@ -85213,6 +86173,8 @@ self: { pname = "hashids"; version = "1.0.2.3"; sha256 = "ecd74235e8f729514214715b828bf479701aa4b777e4f104ea07534a30822534"; + revision = "1"; + editedCabalFile = "ccdb6eefcfb1a8c0f1e4751e4e469797224f88a59b8e9c725c111b90a6a6e27a"; libraryHaskellDepends = [ base bytestring containers split ]; testHaskellDepends = [ base bytestring containers split ]; homepage = "http://hashids.org/"; @@ -85433,8 +86395,8 @@ self: { }: mkDerivation { pname = "haskanoid"; - version = "0.1.5"; - sha256 = "2a2270b3e941ec942c7d12f641bcf651895f42341514759b1edb77390d205ecc"; + version = "0.1.5.2"; + sha256 = "ee866c34cae8021aab930a6f6b5817f7ec47d2089c68c45d4ce556cd39f584c3"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -85552,14 +86514,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskeline_0_7_3_1" = callPackage + "haskeline_0_7_4_0" = callPackage ({ mkDerivation, base, bytestring, containers, directory, filepath , process, terminfo, transformers, unix }: mkDerivation { pname = "haskeline"; - version = "0.7.3.1"; - sha256 = "7bec719c44d03cc78eb343f7927b1fc0482380384eed506ecb1644b86c62db22"; + version = "0.7.4.0"; + sha256 = "9ad5f556891733171086823ad63fc1e7b6cd9d758ff3f943eadbbdfaead53978"; configureFlags = [ "-fterminfo" ]; libraryHaskellDepends = [ base bytestring containers directory filepath process terminfo @@ -85585,12 +86547,12 @@ self: { }) {}; "haskeline-repl" = callPackage - ({ mkDerivation, base, haskeline, mtl }: + ({ mkDerivation, ansi-terminal, base, haskeline, mtl, safe }: mkDerivation { pname = "haskeline-repl"; - version = "0.1.0.0"; - sha256 = "1f1b05d615d6e35a98aec2bf705f848ff91f2b668e982f891537c83bbb5930e7"; - libraryHaskellDepends = [ base haskeline mtl ]; + version = "0.4.0.0"; + sha256 = "ee1fa50e447997eebc0a2218a1b6cb85e379054d22c016f6e248d7d6615e722d"; + libraryHaskellDepends = [ ansi-terminal base haskeline mtl safe ]; homepage = "https://github.com/githubuser/haskeline-repl#readme"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -85945,14 +86907,15 @@ self: { ({ mkDerivation, base, containers, gloss }: mkDerivation { pname = "haskell-go-checkers"; - version = "0.1.0.0"; - sha256 = "0bf488fcce071ecd545025f0804e9b7287fdde4c094ce8bb82afa46738c7ac49"; + version = "0.1.1.0"; + sha256 = "a2c11c448750cfd3b2490fae59211f43c85e716e8c7566ff7fdffece021fd2ac"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base containers gloss ]; homepage = "https://github.com/prateekkumarweb/haskell-go-checkers"; description = "Go and Checkers game in Haskell"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "haskell-google-trends" = callPackage @@ -86513,6 +87476,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "haskell-src-meta_0_8" = callPackage + ({ mkDerivation, base, haskell-src-exts, HUnit, pretty, syb + , template-haskell, test-framework, test-framework-hunit + , th-orphans + }: + mkDerivation { + pname = "haskell-src-meta"; + version = "0.8"; + sha256 = "9d08ad3d5e765b54f9e0d77638b0bef6e25f83274962c7502941e7e71eeb694f"; + libraryHaskellDepends = [ + base haskell-src-exts pretty syb template-haskell th-orphans + ]; + testHaskellDepends = [ + base haskell-src-exts HUnit pretty template-haskell test-framework + test-framework-hunit + ]; + description = "Parse source to template-haskell abstract syntax"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "haskell-src-meta-mwotton" = callPackage ({ mkDerivation, base, containers, ghc-prim, haskell-src-exts , pretty, syb, template-haskell @@ -86585,14 +87569,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-ast_0_6_0_0" = callPackage + "haskell-tools-ast_0_7_0_0" = callPackage ({ mkDerivation, base, ghc, mtl, references, template-haskell , uniplate }: mkDerivation { pname = "haskell-tools-ast"; - version = "0.6.0.0"; - sha256 = "bb3669b5fb70875551a29efd781e58408c26107eb26f1a4b41d8123a9f7dd6a6"; + version = "0.7.0.0"; + sha256 = "db3b51d417711960b454811cddf5fa18a52b5a0d26f43fb21e104effbb487918"; libraryHaskellDepends = [ base ghc mtl references template-haskell uniplate ]; @@ -86675,15 +87659,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-backend-ghc_0_6_0_0" = callPackage + "haskell-tools-backend-ghc_0_7_0_0" = callPackage ({ mkDerivation, base, bytestring, containers, ghc , haskell-tools-ast, mtl, references, safe, split, template-haskell , transformers, uniplate }: mkDerivation { pname = "haskell-tools-backend-ghc"; - version = "0.6.0.0"; - sha256 = "1bc88d278a314207ebe47cc8a85cebf6b6cd6d835f858e45be2d0cc663a40d96"; + version = "0.7.0.0"; + sha256 = "eff7ebe8b307f845103cbc0d543342f3730e9cf7187db6603ac950f73978c025"; libraryHaskellDepends = [ base bytestring containers ghc haskell-tools-ast mtl references safe split template-haskell transformers uniplate @@ -86724,7 +87708,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-cli_0_6_0_0" = callPackage + "haskell-tools-cli_0_7_0_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion , directory, filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-prettyprint, haskell-tools-refactor, knob, mtl @@ -86732,8 +87716,8 @@ self: { }: mkDerivation { pname = "haskell-tools-cli"; - version = "0.6.0.0"; - sha256 = "fe6da0d9a8cfd42ff74579bbfe7d727a64f4e3b8b99770920877a0ddcee6d786"; + version = "0.7.0.0"; + sha256 = "f69f047da3fe211b21ac3f493ac375b45d60ce7f3d0e425826d353ce9882cfd6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -86782,7 +87766,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-daemon_0_6_0_0" = callPackage + "haskell-tools-daemon_0_7_0_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, Diff , directory, filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-prettyprint, haskell-tools-refactor, HUnit, mtl @@ -86790,8 +87774,8 @@ self: { }: mkDerivation { pname = "haskell-tools-daemon"; - version = "0.6.0.0"; - sha256 = "25500cc2877eb692cb70905b8f52fc4934ead7030d1acad4165a663dc59e7545"; + version = "0.7.0.0"; + sha256 = "fc67b08913e0be54f0cf199e5be5b1306b1586d7e9f8c531810d7fd66a664c27"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -86832,15 +87816,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-debug_0_6_0_0" = callPackage + "haskell-tools-debug_0_7_0_0" = callPackage ({ mkDerivation, base, filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-backend-ghc, haskell-tools-prettyprint , haskell-tools-refactor, references, template-haskell }: mkDerivation { pname = "haskell-tools-debug"; - version = "0.6.0.0"; - sha256 = "e7c1d57bf0399e5421cff93a7873eb762fc428d0165a18512ef6a755b40f3a80"; + version = "0.7.0.0"; + sha256 = "b1248453f74385a5fa3719077b67d630479e20cecbc10969656f280fbfc914c7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -86886,7 +87870,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-demo_0_6_0_0" = callPackage + "haskell-tools-demo_0_7_0_1" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory , filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-backend-ghc, haskell-tools-prettyprint @@ -86896,8 +87880,8 @@ self: { }: mkDerivation { pname = "haskell-tools-demo"; - version = "0.6.0.0"; - sha256 = "d914bcd4e1e5eb9bee7dcb309847a075ee218c995bc1614bdf0f1ef7a10a1547"; + version = "0.7.0.1"; + sha256 = "e48b65a92440f65d8450864fa21683290e7c0ae7fcc9847f3b89f7bcd929c505"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -86934,14 +87918,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-prettyprint_0_6_0_0" = callPackage + "haskell-tools-prettyprint_0_7_0_0" = callPackage ({ mkDerivation, base, containers, ghc, haskell-tools-ast, mtl , references, split, text, uniplate }: mkDerivation { pname = "haskell-tools-prettyprint"; - version = "0.6.0.0"; - sha256 = "3940d50675b96c29a45a8682effb22a65bf49711dc44deaafcf46272d1c821f8"; + version = "0.7.0.0"; + sha256 = "4c570562e8947cec5668aa0423b3fe15799cdeef165c8083ced1f78947c9aa34"; libraryHaskellDepends = [ base containers ghc haskell-tools-ast mtl references split text uniplate @@ -86983,7 +87967,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-refactor_0_6_0_0" = callPackage + "haskell-tools-refactor_0_7_0_0" = callPackage ({ mkDerivation, base, Cabal, containers, directory, either , filepath, ghc, ghc-paths, haskell-tools-ast , haskell-tools-backend-ghc, haskell-tools-prettyprint @@ -86993,8 +87977,8 @@ self: { }: mkDerivation { pname = "haskell-tools-refactor"; - version = "0.6.0.0"; - sha256 = "1a339d0571d78a94099cd442bf0865cb30df3b7054e7c75d7a5a20effbf94087"; + version = "0.7.0.0"; + sha256 = "2681a53191f41ebd4e85831dfcbad5caa15ed7cdd8ff16bc187d72deec5c3b5a"; libraryHaskellDepends = [ base Cabal containers directory filepath ghc ghc-paths haskell-tools-ast haskell-tools-backend-ghc @@ -87037,15 +88021,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "haskell-tools-rewrite_0_6_0_0" = callPackage + "haskell-tools-rewrite_0_7_0_0" = callPackage ({ mkDerivation, base, containers, directory, filepath, ghc , haskell-tools-ast, haskell-tools-prettyprint, mtl, references , tasty, tasty-hunit }: mkDerivation { pname = "haskell-tools-rewrite"; - version = "0.6.0.0"; - sha256 = "3a328de2b8df98fdb7e10308daf31b3ca8be401ad8df3b26887f2035642705f7"; + version = "0.7.0.0"; + sha256 = "170907b0018d7102119716dd81f92f7c18c9388d27c4b15d660ef2108e23f401"; libraryHaskellDepends = [ base containers ghc haskell-tools-ast haskell-tools-prettyprint mtl references @@ -87808,7 +88792,7 @@ self: { }) {}; "haskoin-core" = callPackage - ({ mkDerivation, aeson, base, base16-bytestring, byteable + ({ mkDerivation, aeson, base, base16-bytestring, binary, byteable , bytestring, cereal, conduit, containers, cryptohash, deepseq , either, entropy, HUnit, largeword, mtl, murmur3, network, pbkdf , QuickCheck, safe, scientific, secp256k1, split @@ -87818,8 +88802,8 @@ self: { }: mkDerivation { pname = "haskoin-core"; - version = "0.4.0"; - sha256 = "151f82fd98b3527a873af081acecc8585a747f077e3513597d1c85921ee3eff1"; + version = "0.4.2"; + sha256 = "f35bce54c208c7445fa0588eb945c207a2eeff3cb1c5e1ae854afa876752d45b"; libraryHaskellDepends = [ aeson base base16-bytestring byteable bytestring cereal conduit containers cryptohash deepseq either entropy largeword mtl murmur3 @@ -87827,7 +88811,7 @@ self: { time vector ]; testHaskellDepends = [ - aeson base bytestring cereal containers HUnit largeword mtl + aeson base binary bytestring cereal containers HUnit largeword mtl QuickCheck safe scientific secp256k1 split string-conversions test-framework test-framework-hunit test-framework-quickcheck2 text unordered-containers vector @@ -87875,8 +88859,8 @@ self: { }: mkDerivation { pname = "haskoin-node"; - version = "0.4.0"; - sha256 = "e4e021ba7c2be81410866301eb0efe672fa258825675f882f032af0a50cbc96b"; + version = "0.4.2"; + sha256 = "3aa1a48e25660a03d08650e536606ae0fb5981275a2a3a4333e1508c4b6e0f4e"; libraryHaskellDepends = [ aeson async base bytestring cereal concurrent-extra conduit conduit-extra containers data-default deepseq either esqueleto @@ -87978,8 +88962,8 @@ self: { }: mkDerivation { pname = "haskoin-wallet"; - version = "0.4.0"; - sha256 = "9bc185a7e5571c3ae7e2c34acc4345cbe808d1a314208795ef7f89c6cf3a0b09"; + version = "0.4.2"; + sha256 = "a536ec4620ac54f603bf249a5f66557b2c2cc1a645346e1ff9b726e371f9727a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -87991,7 +88975,10 @@ self: { stm stm-chans stm-conduit string-conversions text time transformers-base unix unordered-containers yaml zeromq4-haskell ]; - executableHaskellDepends = [ base ]; + executableHaskellDepends = [ + aeson aeson-pretty base haskoin-node monad-logger persistent-sqlite + resourcet string-conversions unordered-containers zeromq4-haskell + ]; testHaskellDepends = [ aeson base bytestring containers directory haskoin-core haskoin-node HUnit monad-logger mtl persistent persistent-sqlite @@ -88594,8 +89581,8 @@ self: { pname = "hastache"; version = "0.6.1"; sha256 = "8c8f89669d6125201d7163385ea9055ab8027a69d1513259f8fbdd53c244b464"; - revision = "4"; - editedCabalFile = "10661eb3aea897aae7d81242de0dbba4eb412ee282d3a7343ed88ce626fd6bd8"; + revision = "5"; + editedCabalFile = "6e645296912c401a73a346c38a6ce2446d42591b3c602f7c657a626d9a0c8d3b"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -88877,6 +89864,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "haven" = callPackage + ({ mkDerivation, base, bytestring, containers, http-conduit + , http-types, mtl, SHA, xml + }: + mkDerivation { + pname = "haven"; + version = "0.1.0.0"; + sha256 = "0f1a0ae54594429d11fd11b6975aa2f115d0063f4687992a30048c8c75153598"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base bytestring containers http-conduit http-types mtl SHA xml + ]; + description = "Recursively retrieve maven dependencies"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "haverer" = callPackage ({ mkDerivation, base, basic-prelude, containers, errors, lens , MonadRandom, mtl, random-shuffle, tasty, tasty-hunit @@ -89254,18 +90258,16 @@ self: { }) {inherit (pkgs) SDL_mixer;}; "hblas" = callPackage - ({ mkDerivation, base, blas, HUnit, liblapack, primitive - , storable-complex, tasty, tasty-hunit, vector + ({ mkDerivation, base, blas, hspec, liblapack, primitive + , storable-complex, vector }: mkDerivation { pname = "hblas"; - version = "0.3.2.1"; - sha256 = "3e159cc8c98735861edad47cd4da11bd5862bb629601a9bc441960c921ae8215"; - revision = "2"; - editedCabalFile = "48b2f43d8ac30594dc0fbcadc4f4a7a478394da7f223bc909aa18bdcadb99d09"; + version = "0.4.0.0"; + sha256 = "8bbd167775fd0bd14cbd24fc637de1d6fa4ba98ecf7781391cdae98426366b0a"; libraryHaskellDepends = [ base primitive storable-complex vector ]; librarySystemDepends = [ blas liblapack ]; - testHaskellDepends = [ base HUnit tasty tasty-hunit vector ]; + testHaskellDepends = [ base hspec primitive vector ]; homepage = "http://github.com/wellposed/hblas/"; description = "Human friendly BLAS and Lapack bindings for Haskell"; license = stdenv.lib.licenses.bsd3; @@ -89557,13 +90559,14 @@ self: { ({ mkDerivation, base, bluetooth, cwiid, unix }: mkDerivation { pname = "hcwiid"; - version = "0.0.5"; - sha256 = "9d249bc8263cb0ad576c64a71bbdd42fb423d2bfb5a2e9cdf449b5d0e64cc136"; + version = "0.0.6.1"; + sha256 = "21adb829fed670dd7dcd3c1412b53af6ecd3c85cf23067d13ac77dc2167df4b0"; libraryHaskellDepends = [ base unix ]; librarySystemDepends = [ bluetooth cwiid ]; homepage = "https://github.com/ivanperez-keera/hcwiid"; description = "Library to interface with the wiimote"; license = stdenv.lib.licenses.gpl2; + hydraPlatforms = [ "x86_64-darwin" ]; }) {bluetooth = null; inherit (pkgs) cwiid;}; "hdaemonize" = callPackage @@ -89582,6 +90585,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hdaemonize_0_5_3" = callPackage + ({ mkDerivation, base, bytestring, extensible-exceptions, filepath + , hsyslog, mtl, unix + }: + mkDerivation { + pname = "hdaemonize"; + version = "0.5.3"; + sha256 = "a1884c7444ed11b86f4776dbfbabe42adff8a91de0a261747c30778ea50c6118"; + libraryHaskellDepends = [ + base bytestring extensible-exceptions filepath hsyslog mtl unix + ]; + homepage = "http://github.com/greydot/hdaemonize"; + description = "Library to handle the details of writing daemons for UNIX"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hdaemonize-buildfix" = callPackage ({ mkDerivation, base, extensible-exceptions, filepath, hsyslog , mtl, unix @@ -89882,8 +90902,8 @@ self: { }: mkDerivation { pname = "hdo"; - version = "0.4"; - sha256 = "b15832e660ec0072d50aea07fab0324a107b090d221446961dce20babffd69d0"; + version = "0.5"; + sha256 = "5a55fbb3a92c1d98656ac9cb62218a68ba760d699eeaf874c005d44b24b43d5a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -90026,11 +91046,14 @@ self: { }) {}; "heaps" = callPackage - ({ mkDerivation, base, directory, doctest, filepath }: + ({ mkDerivation, base, Cabal, cabal-doctest, directory, doctest + , filepath + }: mkDerivation { pname = "heaps"; - version = "0.3.3"; - sha256 = "04e358d3e6d8ca7786749b6d3945e18159506f8b21ca48b1913c771dcaae1537"; + version = "0.3.4.1"; + sha256 = "7c2567095b8459e8cee61df6a3ee3adb67b8f2f5a42422b444c3e3ce271c2ff9"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base directory doctest filepath ]; homepage = "http://github.com/ekmett/heaps/"; @@ -90126,19 +91149,19 @@ self: { "hedgehog" = callPackage ({ mkDerivation, ansi-terminal, async, base, bytestring , concurrent-output, containers, directory, exceptions, mmorph, mtl - , pretty-show, primitive, random, resourcet, template-haskell, text - , th-lift, time, transformers, transformers-base + , pretty-show, primitive, random, resourcet, stm, template-haskell + , text, th-lift, time, transformers, transformers-base, unix , wl-pprint-annotated }: mkDerivation { pname = "hedgehog"; - version = "0.1"; - sha256 = "4d098f3162f92fe26d15cb589f17ce83c627c4591d155475afcb97161938d8a5"; + version = "0.2.1"; + sha256 = "1d14d2ac5adf566dd7711bc2978723dd5dc4976dcd472d2d22ab3f6a23488b0d"; libraryHaskellDepends = [ ansi-terminal async base bytestring concurrent-output containers directory exceptions mmorph mtl pretty-show primitive random - resourcet template-haskell text th-lift time transformers - transformers-base wl-pprint-annotated + resourcet stm template-haskell text th-lift time transformers + transformers-base unix wl-pprint-annotated ]; testHaskellDepends = [ base containers pretty-show text transformers @@ -90146,6 +91169,7 @@ self: { homepage = "https://hedgehog.qa"; description = "Hedgehog will eat all your bugs"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hedis" = callPackage @@ -91291,8 +92315,8 @@ self: { }: mkDerivation { pname = "hexpat-lens"; - version = "0.1.4"; - sha256 = "35783e1bb8654ac74866b7910f7f58385a78d0005d05c26bc7efd36ca9827978"; + version = "0.1.5"; + sha256 = "cae65e389dbf69932e313cd45fec7fc2f7c45551c583773bc27059856a2f268d"; libraryHaskellDepends = [ base bytestring deepseq hexpat hexpat-tagsoup lens ]; @@ -91575,13 +92599,17 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "hformat_0_2_0_0" = callPackage - ({ mkDerivation, base, base-unicode-symbols, hspec, text }: + "hformat_0_3_0_0" = callPackage + ({ mkDerivation, ansi-terminal, base, base-unicode-symbols, hspec + , text + }: mkDerivation { pname = "hformat"; - version = "0.2.0.0"; - sha256 = "a949d752095cdc21a2e48ab4adf068ba67e5e53fa394e6fae9f29fe156dccefb"; - libraryHaskellDepends = [ base base-unicode-symbols text ]; + version = "0.3.0.0"; + sha256 = "daf8636c4b3ac94c7831856123d4a4f94c03d89fa8f9e7e0f56866f622938002"; + libraryHaskellDepends = [ + ansi-terminal base base-unicode-symbols text + ]; testHaskellDepends = [ base base-unicode-symbols hspec text ]; homepage = "http://github.com/mvoidex/hformat"; description = "Simple Haskell formatting"; @@ -92526,8 +93554,8 @@ self: { }: mkDerivation { pname = "hindent"; - version = "5.2.2"; - sha256 = "1fc9a92a501552b17219a13fd691e380cc2e2bbf4d768788f13b47639ff4237d"; + version = "5.2.3"; + sha256 = "931f097182c1633fddfb63896df7aeef9ba8447870b27616c0216f86df7c4cf2"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -92547,7 +93575,7 @@ self: { base bytestring criterion deepseq directory exceptions ghc-prim haskell-src-exts utf8-string ]; - homepage = "http://www.github.com/chrisdone/hindent"; + homepage = "https://github.com/commercialhaskell/hindent"; description = "Extensible Haskell pretty printer"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -92755,8 +93783,8 @@ self: { }: mkDerivation { pname = "hinterface"; - version = "0.5.0.1"; - sha256 = "0c25984c5713318e00990d0a787fb3d788fe0211273d1f7901a8d590b4d3a700"; + version = "0.5.0.2"; + sha256 = "4b2b3ebf5b864ac2770661059330c10d672142b010a2c50137cfa236afe568c5"; libraryHaskellDepends = [ array async base binary bytestring containers cryptonite exceptions lifted-async lifted-base memory monad-control monad-logger mtl @@ -92809,15 +93837,15 @@ self: { }: mkDerivation { pname = "hip"; - version = "1.5.2.0"; - sha256 = "4f5eecf455df1d5a0a577abfefd48e519be8f57f9c47ca2edf31dc0982b7dc46"; + version = "1.5.3.0"; + sha256 = "f9c7a34e9fbbb208adcf15d8ea76c44a8a13ec852261f0bb4913a3dfcac74f1e"; libraryHaskellDepends = [ base bytestring Chart Chart-diagrams colour deepseq directory filepath JuicyPixels netpbm primitive process repa temporary vector ]; testHaskellDepends = [ base bytestring hspec QuickCheck ]; benchmarkHaskellDepends = [ - base criterion deepseq repa repa-algorithms + base criterion deepseq repa repa-algorithms vector ]; homepage = "https://github.com/lehins/hip"; description = "Haskell Image Processing (HIP) Library"; @@ -93271,27 +94299,6 @@ self: { }: mkDerivation { pname = "hjsonpointer"; - version = "1.1.0.2"; - sha256 = "fe6826b2ede3ce7541e5c88bda78dd66cc76725f14b06533bb5ecadddcb2cc65"; - libraryHaskellDepends = [ - aeson base hashable QuickCheck semigroups text unordered-containers - vector - ]; - testHaskellDepends = [ - aeson base hspec http-types QuickCheck text unordered-containers - vector - ]; - homepage = "https://github.com/seagreen/hjsonpointer"; - description = "JSON Pointer library"; - license = stdenv.lib.licenses.mit; - }) {}; - - "hjsonpointer_1_1_1" = callPackage - ({ mkDerivation, aeson, base, hashable, hspec, http-types - , QuickCheck, semigroups, text, unordered-containers, vector - }: - mkDerivation { - pname = "hjsonpointer"; version = "1.1.1"; sha256 = "e3b10de420cf3d6751f69c6aabcdfccb3cae6c3ec7e6378b909aac6e46840d5f"; libraryHaskellDepends = [ @@ -93305,7 +94312,6 @@ self: { homepage = "https://github.com/seagreen/hjsonpointer"; description = "JSON Pointer library"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hjsonschema" = callPackage @@ -93564,7 +94570,7 @@ self: { homepage = "https://github.com/gebner/hledger-diff"; description = "Compares the transactions in two ledger files"; license = stdenv.lib.licenses.gpl3; - maintainers = with stdenv.lib.maintainers; [ gebner peti ]; + maintainers = with stdenv.lib.maintainers; [ gebner ]; }) {}; "hledger-iadd" = callPackage @@ -93577,6 +94583,8 @@ self: { pname = "hledger-iadd"; version = "1.2.1"; sha256 = "bc2636fbdce63f62b29ef9cba4e876469b4a040b0b10d2d4575927ef186a591e"; + revision = "1"; + editedCabalFile = "a67b31eaa0a5916a3a1b529628aeb736b8db08586f0b3a519c360ead13d78c84"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -93631,7 +94639,7 @@ self: { ]; description = "computes the internal rate of return of an investment"; license = stdenv.lib.licenses.bsd3; - maintainers = with stdenv.lib.maintainers; [ peti ]; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hledger-lib" = callPackage @@ -93825,6 +94833,7 @@ self: { homepage = "https://github.com/jakubfijalkowski/hlibsass"; description = "Low-level bindings to Libsass"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) libsass;}; "hlint" = callPackage @@ -93849,7 +94858,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "hlint_2_0_5" = callPackage + "hlint_2_0_6" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, cmdargs , containers, cpphs, directory, extra, filepath, haskell-src-exts , hscolour, process, refact, text, transformers, uniplate @@ -93857,8 +94866,8 @@ self: { }: mkDerivation { pname = "hlint"; - version = "2.0.5"; - sha256 = "fc3517275a2878a25a6463a6e8f8492b7b525adb5f3e6099ff388e9bc280a6b1"; + version = "2.0.6"; + sha256 = "def386e6e9a3866541316c20b158e9d652ac48c3fd8e4f60c1848286393da27a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -94112,6 +95121,7 @@ self: { homepage = "https://github.com/peddie/hmatrix-nlopt"; description = "Interface HMatrix with the NLOPT minimizer"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hmatrix-quadprogpp" = callPackage @@ -95283,8 +96293,8 @@ self: { }: mkDerivation { pname = "hoogle"; - version = "5.0.10"; - sha256 = "eb6eec27ceb6f4d70757353156a70cc6501e7424db581bf3aba100555ed48a84"; + version = "5.0.12"; + sha256 = "1d37f1e96b699fe71ea3661ac2a9424cfd178cba5cc26b0a7ee5505e6fb49308"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -95338,15 +96348,14 @@ self: { "hookup" = callPackage ({ mkDerivation, base, bytestring, HsOpenSSL, HsOpenSSL-x509-system - , network, openssl, socks, template-haskell + , network, openssl, socks }: mkDerivation { pname = "hookup"; - version = "0.1.0.0"; - sha256 = "0b321b470cb66f8b0d1611cbe26ec6d0c8904f984456bd2fbe292fb2efd8a580"; + version = "0.1.1.0"; + sha256 = "e5f0384d832304e4398b3fe7859962acbddbfbf5f2bd9d31ae5331cc459aeb85"; libraryHaskellDepends = [ base bytestring HsOpenSSL HsOpenSSL-x509-system network socks - template-haskell ]; librarySystemDepends = [ openssl ]; homepage = "https://github.com/glguy/irc-core"; @@ -96068,8 +97077,8 @@ self: { }: mkDerivation { pname = "hpack-convert"; - version = "0.14.6"; - sha256 = "80a439b06603e48f338ad4a08b0ffc54c0f0f97584a265f5fab5b31d8c03cb1c"; + version = "1.0.0"; + sha256 = "b551821123c5ce2d96d97f2ca7a763cb742ea6d8efc051ccf68501eb0cd32051"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -96259,8 +97268,8 @@ self: { }: mkDerivation { pname = "hpc-coveralls"; - version = "1.0.8"; - sha256 = "431db6ee058bf459c3e433c2d9ad89f1fcb344590745c3f62d0b744fc7d288b1"; + version = "1.0.9"; + sha256 = "43ab8bda2e874cfc5690bca938ab3c84688fa332d2a70b390a490ea47bb73e74"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -96279,15 +97288,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "hpc-coveralls_1_0_9" = callPackage + "hpc-coveralls_1_0_10" = callPackage ({ mkDerivation, aeson, async, base, bytestring, Cabal, cmdargs , containers, curl, directory, directory-tree, hpc, HUnit, process , pureMD5, regex-posix, retry, safe, split, transformers }: mkDerivation { pname = "hpc-coveralls"; - version = "1.0.9"; - sha256 = "43ab8bda2e874cfc5690bca938ab3c84688fa332d2a70b390a490ea47bb73e74"; + version = "1.0.10"; + sha256 = "e222c0d36a6d266205957d0c71e1baeb1581847e79b0b5b9d883a4ef7381d0d9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -96354,6 +97363,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hpg" = callPackage + ({ mkDerivation, base, random }: + mkDerivation { + pname = "hpg"; + version = "0.7"; + sha256 = "cab810f1851e5eff7386bb97689db0516c1f289d8fb29cd2ba78cdf213444a5c"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base random ]; + homepage = "https://darcs.alokat.org/hpg"; + description = "a simple password generator"; + license = stdenv.lib.licenses.isc; + }) {}; + "hpio" = callPackage ({ mkDerivation, async, base, base-compat, bytestring, containers , directory, doctest, exceptions, filepath, hlint, hspec, mtl @@ -97533,6 +98556,7 @@ self: { homepage = "https://github.com/jakubfijalkowski/hsass"; description = "Integrating Sass into Haskell applications"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hsay" = callPackage @@ -97668,8 +98692,8 @@ self: { ({ mkDerivation, base, containers, directory, filepath, process }: mkDerivation { pname = "hsc2hs"; - version = "0.68.1"; - sha256 = "507bf174c7ab14667d452efb6b539798a944f2a5fd4cd45120a1afb8551ebe75"; + version = "0.68.2"; + sha256 = "f609707c247c077013fe55e8b2e81ff531a2bc56ac3d962297ec8af2a2d13618"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -98161,18 +99185,21 @@ self: { }) {}; "hscuid" = callPackage - ({ mkDerivation, base, containers, formatting, hostname, random - , text, time, transformers, unix + ({ mkDerivation, base, containers, criterion, hostname, mwc-random + , random, text, time, transformers, unix }: mkDerivation { pname = "hscuid"; - version = "1.2.0.0"; - sha256 = "b4b03b2005cc3e6651b2e221ce5dcdf73026b8f6ab175d0f5a8fe6b427ebb505"; + version = "1.2.0.1"; + sha256 = "b2c23fb92ccf637e5de07a92168c6647024da821204f877a925ffed1679cc036"; + isLibrary = true; + isExecutable = true; libraryHaskellDepends = [ - base formatting hostname random text time transformers unix + base hostname mwc-random random text time transformers unix ]; - testHaskellDepends = [ base containers ]; - homepage = "https://github.com/eightyeight/hscuid"; + executableHaskellDepends = [ base criterion ]; + testHaskellDepends = [ base containers text ]; + homepage = "https://github.com/crabmusket/hscuid"; description = "Collision-resistant IDs"; license = stdenv.lib.licenses.bsd3; }) {}; @@ -98355,6 +99382,21 @@ self: { maintainers = with stdenv.lib.maintainers; [ peti ]; }) {}; + "hsemail_2" = callPackage + ({ mkDerivation, base, doctest, hspec, mtl, old-time, parsec }: + mkDerivation { + pname = "hsemail"; + version = "2"; + sha256 = "f5f08a879444abd1f9a8a3e620d7fc83bc632ae3ba9b545bebdf58d5f4bfa8d9"; + libraryHaskellDepends = [ base mtl old-time parsec ]; + testHaskellDepends = [ base doctest hspec mtl old-time parsec ]; + homepage = "https://github.com/peti/hsemail#readme"; + description = "Parsec parsers for the RFC2822 Internet Message format"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + maintainers = with stdenv.lib.maintainers; [ peti ]; + }) {}; + "hsemail-ns" = callPackage ({ mkDerivation, base, mtl, old-time, parsec }: mkDerivation { @@ -98835,28 +99877,6 @@ self: { }: mkDerivation { pname = "hslua-aeson"; - version = "0.1.0.3"; - sha256 = "f10c7fc9fdcc1c41964eb5ab170ce233be99343eb73ddaff5c175bea5bfcf1ea"; - libraryHaskellDepends = [ - aeson base hashable hslua scientific text unordered-containers - vector - ]; - testHaskellDepends = [ - aeson base hashable hslua hspec HUnit ieee754 QuickCheck - quickcheck-instances scientific text unordered-containers vector - ]; - homepage = "https://github.com/tarleb/hslua-aeson#readme"; - description = "Glue between aeson and hslua"; - license = stdenv.lib.licenses.mit; - }) {}; - - "hslua-aeson_0_1_0_4" = callPackage - ({ mkDerivation, aeson, base, hashable, hslua, hspec, HUnit - , ieee754, QuickCheck, quickcheck-instances, scientific, text - , unordered-containers, vector - }: - mkDerivation { - pname = "hslua-aeson"; version = "0.1.0.4"; sha256 = "a887c2defdb30e851d2bafd88e657db8c9982fbfbd0578e63af408643a7e2d9d"; libraryHaskellDepends = [ @@ -98870,7 +99890,6 @@ self: { homepage = "https://github.com/tarleb/hslua-aeson#readme"; description = "Glue between aeson and hslua"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hsmagick" = callPackage @@ -99447,6 +100466,7 @@ self: { homepage = "https://github.com/erikd/hspec-hedgehog/"; description = "Hedgehog support for the Hspec testing framework"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "hspec-jenkins" = callPackage @@ -100439,6 +101459,34 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hsudoku" = callPackage + ({ mkDerivation, base, bytestring, gi-gtk, HandsomeSoup + , haskell-gi-base, hspec, http-client, http-client-tls, hxt + , QuickCheck, text + }: + mkDerivation { + pname = "hsudoku"; + version = "0.1.0.1"; + sha256 = "867bbfeb6660321e5a2927091db581f160805315fac22d4a47a43da4e8aa49ac"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring gi-gtk HandsomeSoup haskell-gi-base http-client + http-client-tls hxt text + ]; + executableHaskellDepends = [ + base bytestring gi-gtk HandsomeSoup haskell-gi-base http-client + http-client-tls hxt text + ]; + testHaskellDepends = [ + base bytestring gi-gtk HandsomeSoup haskell-gi-base hspec + http-client http-client-tls hxt QuickCheck text + ]; + homepage = "https://github.com/marcelmoosbrugger/hsudoku"; + description = "Sudoku game with a GTK3 interface"; + license = stdenv.lib.licenses.mit; + }) {}; + "hsverilog" = callPackage ({ mkDerivation, base, containers, hspec, hspec-contrib , hspec-expectations-lifted, shakespeare, text, transformers @@ -100536,6 +101584,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hsx2hs_0_14_1" = callPackage + ({ mkDerivation, base, bytestring, haskell-src-exts + , haskell-src-meta, mtl, template-haskell, utf8-string + }: + mkDerivation { + pname = "hsx2hs"; + version = "0.14.1"; + sha256 = "e3b0031c84e32805a0f941beb1c2338e2e8497bb44847b81d077d268bbfe39a4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring haskell-src-exts haskell-src-meta mtl + template-haskell utf8-string + ]; + homepage = "https://github.com/seereason/hsx2hs"; + description = "HSX (Haskell Source with XML) allows literal XML syntax in Haskell source code"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hsyscall" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -100563,6 +101631,23 @@ self: { maintainers = with stdenv.lib.maintainers; [ peti ]; }) {}; + "hsyslog_5" = callPackage + ({ mkDerivation, base, doctest }: + mkDerivation { + pname = "hsyslog"; + version = "5"; + sha256 = "4d2fca67cec22c14379e35b3d03d5dd09ced4aefd253ef0c7489cb964e58f91a"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest ]; + homepage = "http://github.com/peti/hsyslog"; + description = "FFI interface to syslog(3) from POSIX.1-2001"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + maintainers = with stdenv.lib.maintainers; [ peti ]; + }) {}; + "hsyslog-udp" = callPackage ({ mkDerivation, base, bytestring, hspec, hsyslog, network, text , time, unix @@ -101069,30 +102154,6 @@ self: { }) {}; "http-api-data" = callPackage - ({ mkDerivation, base, bytestring, Cabal, containers, directory - , doctest, filepath, hashable, hspec, http-types, HUnit, QuickCheck - , quickcheck-instances, text, time, time-locale-compat - , unordered-containers, uri-bytestring, uuid, uuid-types - }: - mkDerivation { - pname = "http-api-data"; - version = "0.3.6"; - sha256 = "46315cdf457553ac3ecaaa3bd2109cbe5bbf41bd561a22a9282b3b460b147641"; - setupHaskellDepends = [ base Cabal directory filepath ]; - libraryHaskellDepends = [ - base bytestring containers hashable http-types text time - time-locale-compat unordered-containers uri-bytestring uuid-types - ]; - testHaskellDepends = [ - base bytestring directory doctest filepath hspec HUnit QuickCheck - quickcheck-instances text time unordered-containers uuid - ]; - homepage = "http://github.com/fizruk/http-api-data"; - description = "Converting to/from HTTP API data like URL pieces, headers and query parameters"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "http-api-data_0_3_7" = callPackage ({ mkDerivation, attoparsec, attoparsec-iso8601, base, bytestring , Cabal, containers, directory, doctest, filepath, hashable, hspec , http-types, HUnit, QuickCheck, quickcheck-instances, text, time @@ -101116,7 +102177,6 @@ self: { homepage = "http://github.com/fizruk/http-api-data"; description = "Converting to/from HTTP API data like URL pieces, headers and query parameters"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "http-attoparsec" = callPackage @@ -101132,37 +102192,6 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "http-client_0_4_31_2" = callPackage - ({ mkDerivation, array, async, base, base64-bytestring - , blaze-builder, bytestring, case-insensitive, containers, cookie - , data-default-class, deepseq, directory, exceptions, filepath - , ghc-prim, hspec, http-types, mime-types, monad-control, network - , network-uri, random, streaming-commons, text, time, transformers - , zlib - }: - mkDerivation { - pname = "http-client"; - version = "0.4.31.2"; - sha256 = "16410148a9705677cdd89510192caf1abd3460db2a17ce0c2fafd7bd0c15d88b"; - libraryHaskellDepends = [ - array base base64-bytestring blaze-builder bytestring - case-insensitive containers cookie data-default-class deepseq - exceptions filepath ghc-prim http-types mime-types network - network-uri random streaming-commons text time transformers - ]; - testHaskellDepends = [ - async base base64-bytestring blaze-builder bytestring - case-insensitive containers deepseq directory hspec http-types - monad-control network network-uri streaming-commons text time - transformers zlib - ]; - doCheck = false; - homepage = "https://github.com/snoyberg/http-client"; - description = "An HTTP client engine, intended as a base layer for more user-friendly packages"; - license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - "http-client" = callPackage ({ mkDerivation, array, async, base, base64-bytestring , blaze-builder, bytestring, case-insensitive, containers, cookie @@ -101324,29 +102353,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "http-client-tls_0_2_4_1" = callPackage - ({ mkDerivation, base, bytestring, connection, data-default-class - , hspec, http-client, http-types, network, tls + "http-client-tls" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, connection + , containers, criterion, cryptonite, data-default-class, exceptions + , hspec, http-client, http-types, memory, network, network-uri + , text, tls, transformers }: mkDerivation { pname = "http-client-tls"; - version = "0.2.4.1"; - sha256 = "8dc85884e15cd32f59a47e11861d78566c6ccb202e8d317403b784278f628ba3"; - revision = "1"; - editedCabalFile = "26f1b0cf1b449df4fce7c4531444ff06ccfacae528d20c5470461ecc4058f56c"; + version = "0.3.4.1"; + sha256 = "b08fed2f18a03eeac5e2db6caf15fd8922032cd9dd50412b67146948ac6b7cd5"; libraryHaskellDepends = [ - base bytestring connection data-default-class http-client network - tls + base bytestring case-insensitive connection containers cryptonite + data-default-class exceptions http-client http-types memory network + network-uri text tls transformers ]; testHaskellDepends = [ base hspec http-client http-types ]; + benchmarkHaskellDepends = [ base criterion http-client ]; doCheck = false; homepage = "https://github.com/snoyberg/http-client"; description = "http-client backend using the connection package and tls library"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "http-client-tls" = callPackage + "http-client-tls_0_3_4_2" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, connection , containers, criterion, cryptonite, data-default-class, exceptions , hspec, http-client, http-types, memory, network, network-uri @@ -101354,8 +102384,8 @@ self: { }: mkDerivation { pname = "http-client-tls"; - version = "0.3.4.1"; - sha256 = "b08fed2f18a03eeac5e2db6caf15fd8922032cd9dd50412b67146948ac6b7cd5"; + version = "0.3.4.2"; + sha256 = "e8bf82330a3c6bd802cc25ff142fb950a1f48eec3f7ad5b4a000445499fdfd4b"; libraryHaskellDepends = [ base bytestring case-insensitive connection containers cryptonite data-default-class exceptions http-client http-types memory network @@ -101367,6 +102397,7 @@ self: { homepage = "https://github.com/snoyberg/http-client"; description = "http-client backend using the connection package and tls library"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "http-common" = callPackage @@ -101834,33 +102865,6 @@ self: { }: mkDerivation { pname = "http-reverse-proxy"; - version = "0.4.3.3"; - sha256 = "eccfbd44f9f9f8a2a8d70dd4f9a347e4dbe39b38327271fcceeff25f0dd18b81"; - libraryHaskellDepends = [ - async base blaze-builder bytestring case-insensitive conduit - conduit-extra containers data-default-class http-client http-types - lifted-base monad-control network resourcet streaming-commons text - transformers wai wai-logger word8 - ]; - testHaskellDepends = [ - base blaze-builder bytestring conduit conduit-extra hspec - http-conduit http-types lifted-base network resourcet - streaming-commons transformers wai warp - ]; - homepage = "https://github.com/fpco/http-reverse-proxy"; - description = "Reverse proxy HTTP requests, either over raw sockets or with WAI"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "http-reverse-proxy_0_4_4" = callPackage - ({ mkDerivation, async, base, blaze-builder, bytestring - , case-insensitive, conduit, conduit-extra, containers - , data-default-class, hspec, http-client, http-conduit, http-types - , lifted-base, monad-control, network, resourcet, streaming-commons - , text, transformers, wai, wai-logger, warp, word8 - }: - mkDerivation { - pname = "http-reverse-proxy"; version = "0.4.4"; sha256 = "1caa943a7b9704a73ae9fa14606f96a6b9eec7312c424dd59574515a8c954978"; libraryHaskellDepends = [ @@ -101877,7 +102881,6 @@ self: { homepage = "https://github.com/fpco/http-reverse-proxy"; description = "Reverse proxy HTTP requests, either over raw sockets or with WAI"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "http-server" = callPackage @@ -101943,6 +102946,40 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "http-streams_0_8_5_3" = callPackage + ({ mkDerivation, aeson, aeson-pretty, attoparsec, base + , base64-bytestring, blaze-builder, bytestring, Cabal + , case-insensitive, directory, ghc-prim, HsOpenSSL, hspec + , hspec-expectations, http-common, HUnit, io-streams, lifted-base + , mtl, network, network-uri, openssl-streams, snap-core + , snap-server, system-fileio, system-filepath, text, transformers + , unordered-containers + }: + mkDerivation { + pname = "http-streams"; + version = "0.8.5.3"; + sha256 = "cadaf4f52af24bf14bc0b0991c1d040e315622301796db30000da5f67b2ee5e3"; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ + aeson attoparsec base base64-bytestring blaze-builder bytestring + case-insensitive directory HsOpenSSL http-common io-streams mtl + network network-uri openssl-streams text transformers + unordered-containers + ]; + testHaskellDepends = [ + aeson aeson-pretty attoparsec base base64-bytestring blaze-builder + bytestring case-insensitive directory ghc-prim HsOpenSSL hspec + hspec-expectations http-common HUnit io-streams lifted-base mtl + network network-uri openssl-streams snap-core snap-server + system-fileio system-filepath text transformers + unordered-containers + ]; + homepage = "http://github.com/afcowie/http-streams/"; + description = "An HTTP client using io-streams"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "http-test" = callPackage ({ mkDerivation, aeson, base, bytestring, http-client, lens , lens-aeson, mtl, tasty, tasty-hunit, text, time, wreq @@ -103086,6 +104123,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "hw-prim_0_4_0_3" = callPackage + ({ mkDerivation, base, bytestring, hspec, QuickCheck, vector }: + mkDerivation { + pname = "hw-prim"; + version = "0.4.0.3"; + sha256 = "540976d93138dae0863a02ba4ab063ba3d1484677a66990c7bd2c3fc3d8d4500"; + libraryHaskellDepends = [ base bytestring vector ]; + testHaskellDepends = [ base bytestring hspec QuickCheck vector ]; + homepage = "http://github.com/haskell-works/hw-prim#readme"; + description = "Primitive functions and data types"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hw-rankselect" = callPackage ({ mkDerivation, base, hspec, hw-balancedparens, hw-bits, hw-prim , hw-rankselect-base, QuickCheck, vector @@ -104107,8 +105158,8 @@ self: { ({ mkDerivation, base, blaze-html, deepseq, text }: mkDerivation { pname = "hyper"; - version = "0.1.0.0"; - sha256 = "04c76c0c88f658e9878f8090cc2e1351977128861ce4c03ce52d11c42e44b3da"; + version = "0.1.0.1"; + sha256 = "44ab0512d4bf64482a715dea87224bf2a33f81470add489c3fd25bcc878cee4b"; libraryHaskellDepends = [ base blaze-html deepseq text ]; description = "Display class for the HyperHaskell graphical Haskell interpreter"; license = stdenv.lib.licenses.bsd3; @@ -104120,8 +105171,8 @@ self: { }: mkDerivation { pname = "hyper-extra"; - version = "0.1.0.0"; - sha256 = "1c36de58e0f51cfc3f47c83185c9d08539491d208c3b956f7de1119cd94858c8"; + version = "0.1.0.1"; + sha256 = "6cb7b9708597584838ab4fff307d9ddfd96ece44b50e0ffdd0ded18bf1b8cbb9"; libraryHaskellDepends = [ base diagrams-lib diagrams-svg hyper svg-builder text ]; @@ -104136,8 +105187,8 @@ self: { }: mkDerivation { pname = "hyper-haskell-server"; - version = "0.1.0.0"; - sha256 = "dcbd3d4e9b4026d6531fb54041e5ce595cec4094098a902d9e24c8f7b69516b8"; + version = "0.1.0.1"; + sha256 = "43b0d770896ca0c38aee876bb23ee03b20009ce7afab4d6b5ca07a99f6e7f290"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -104277,6 +105328,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "hyphenation_0_7" = callPackage + ({ mkDerivation, base, bytestring, Cabal, cabal-doctest, containers + , doctest, unordered-containers, zlib + }: + mkDerivation { + pname = "hyphenation"; + version = "0.7"; + sha256 = "3a61abc2aab369f092141b9d9bd68ded16b3614ac333fb6f486abd399bdb3e50"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base bytestring containers unordered-containers zlib + ]; + testHaskellDepends = [ + base containers doctest unordered-containers + ]; + homepage = "http://github.com/ekmett/hyphenation"; + description = "Configurable Knuth-Liang hyphenation"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "hypher" = callPackage ({ mkDerivation, aeson, base, bytestring, Cabal, containers , data-default, hashable, HTTP, http-conduit, http-types, HUnit @@ -104747,8 +105819,10 @@ self: { }: mkDerivation { pname = "identifiers"; - version = "0.4.1.0"; - sha256 = "8ba63f3a52712f2296d8dc1737593560c38055a54f2745d3a9c465269d25b38c"; + version = "0.4.2.0"; + sha256 = "332e02870c89fbde48f9548212d35f56634c36cef86fecd6520918a3104e1331"; + revision = "1"; + editedCabalFile = "85462e8b234f7ed99ea678133f60e0d31d512403f1b9ea614b716687652d2d08"; libraryHaskellDepends = [ base binary cereal containers deepseq hashable ListLike text unordered-containers @@ -105351,6 +106425,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "ihs" = callPackage + ({ mkDerivation, base, process }: + mkDerivation { + pname = "ihs"; + version = "0.1.0.0"; + sha256 = "8ad33d91faae09309cf0286a26dfb0efbd8e1489e33de9fa44a529b5dfd3179d"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ base process ]; + homepage = "https://github.com/minad/ihs"; + description = "Interpolated Haskell"; + license = stdenv.lib.licenses.publicDomain; + }) {}; + "ihttp" = callPackage ({ mkDerivation, attoparsec, base, bytestring, containers , contstuff, enumerator, netlines, network @@ -105528,8 +106616,8 @@ self: { }: mkDerivation { pname = "imap"; - version = "0.3.0.0"; - sha256 = "df9d551e51416efea48bc31f3d31096c9dfb94ad3dc0231f74b5ae5b65d26d28"; + version = "0.3.0.2"; + sha256 = "0af38b918875eecd1062c1deab83819200f9096681a33f955a5a451ef1af8ed5"; libraryHaskellDepends = [ attoparsec base bytestring connection containers derive either exceptions hslogger list-t network pipes random rolling-queue stm @@ -106448,8 +107536,8 @@ self: { }: mkDerivation { pname = "influxdb"; - version = "1.1.2"; - sha256 = "d5beba48d2dd15c0228e2152b5960dae8f4356d7f2ca848d5460dcd55949ae29"; + version = "1.1.2.1"; + sha256 = "fcf8d5922db7ba89bb65860958a39645126d8b76c4e87876a2b906219f0909c6"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -106744,8 +107832,8 @@ self: { pname = "insert-ordered-containers"; version = "0.2.1.0"; sha256 = "d71d126bf455898492e1d2ba18b2ad04453f8b0e4daff3926a67f0560a712298"; - revision = "1"; - editedCabalFile = "642acfbcacd418f194e6fd7bf6d64cbb8efaf625bb0efaaed00504f3ba54c877"; + revision = "2"; + editedCabalFile = "972f14c0cf96728583b054eb2b26c2555438094685b562357ef12e1dc4cfc3eb"; libraryHaskellDepends = [ aeson base base-compat hashable lens semigroupoids semigroups text transformers unordered-containers @@ -107139,8 +108227,8 @@ self: { }: mkDerivation { pname = "interlude-l"; - version = "0.2.0.0"; - sha256 = "39707b2d0ad546aa6ff34ad072ab0a231e23dc3c009708c63b0331c3c7f14270"; + version = "0.2.0.1"; + sha256 = "686aa99c4385df61c5e4d4617c6abb5d3648266c831c6a262214832ae0ed354b"; libraryHaskellDepends = [ aeson base exceptions lens monad-control MonadRandom mtl protolude string-conv text transformers witherable @@ -107372,6 +108460,26 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "intervals_0_8" = callPackage + ({ mkDerivation, array, base, Cabal, cabal-doctest, directory + , distributive, doctest, filepath, ghc-prim, QuickCheck + , template-haskell + }: + mkDerivation { + pname = "intervals"; + version = "0.8"; + sha256 = "6423945feae2c1e0f4113900cac23efb95051bc5e18a8c93966db24fef81e8c4"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ array base distributive ghc-prim ]; + testHaskellDepends = [ + base directory doctest filepath QuickCheck template-haskell + ]; + homepage = "http://github.com/ekmett/intervals"; + description = "Interval Arithmetic"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "intricacy" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers , crypto-api, crypto-pubkey-types, cryptohash, directory, filepath @@ -107526,29 +108634,8 @@ self: { }: mkDerivation { pname = "invariant"; - version = "0.4"; - sha256 = "dccf2790eb545d167623c0133aa0838d714004bfd158e3c9dfaca38497aef316"; - libraryHaskellDepends = [ - array base bifunctors comonad containers contravariant ghc-prim - profunctors semigroups StateVar stm tagged template-haskell - transformers transformers-compat unordered-containers - ]; - testHaskellDepends = [ base hspec QuickCheck ]; - homepage = "https://github.com/nfrisby/invariant-functors"; - description = "Haskell 98 invariant functors"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "invariant_0_4_1" = callPackage - ({ mkDerivation, array, base, bifunctors, comonad, containers - , contravariant, ghc-prim, hspec, profunctors, QuickCheck - , semigroups, StateVar, stm, tagged, template-haskell, transformers - , transformers-compat, unordered-containers - }: - mkDerivation { - pname = "invariant"; - version = "0.4.1"; - sha256 = "b0a9a54dbc3b850feb8c7dadf1ccfef4ef2fff87165e1a28e52ad297577446a1"; + version = "0.4.2"; + sha256 = "5aa744ff09f118b642bcc4910261ed57f109af42eab5d218062f6bc28f54b1d4"; libraryHaskellDepends = [ array base bifunctors comonad containers contravariant ghc-prim profunctors semigroups StateVar stm tagged template-haskell @@ -107557,8 +108644,7 @@ self: { testHaskellDepends = [ base hspec QuickCheck template-haskell ]; homepage = "https://github.com/nfrisby/invariant-functors"; description = "Haskell98 invariant functors"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; + license = stdenv.lib.licenses.bsd2; }) {}; "invertible" = callPackage @@ -107570,6 +108656,8 @@ self: { pname = "invertible"; version = "0.2.0.2"; sha256 = "eee1b66f20190b5cc87122e22c664422df4188b38f81e896e8381bf2f58385a8"; + revision = "1"; + editedCabalFile = "0f8afa1cb2be457a47ce089313cc7eb29079e41029a8e9c348421a63590573c9"; libraryHaskellDepends = [ base haskell-src-meta invariant lens partial-isomorphisms semigroupoids template-haskell transformers TypeCompose @@ -107762,6 +108850,33 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "io-streams_1_4_0_0" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, bytestring-builder + , deepseq, directory, filepath, HUnit, mtl, network, primitive + , process, QuickCheck, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, time, transformers, vector + , zlib, zlib-bindings + }: + mkDerivation { + pname = "io-streams"; + version = "1.4.0.0"; + sha256 = "6d393da60cbbbb31ca3cfe6e25beea6a1fd426ed1348723b357c6358f538930e"; + configureFlags = [ "-fnointeractivetests" ]; + libraryHaskellDepends = [ + attoparsec base bytestring bytestring-builder network primitive + process text time transformers vector zlib-bindings + ]; + testHaskellDepends = [ + attoparsec base bytestring bytestring-builder deepseq directory + filepath HUnit mtl network primitive process QuickCheck + test-framework test-framework-hunit test-framework-quickcheck2 text + time transformers vector zlib zlib-bindings + ]; + description = "Simple, composable, and easy-to-use stream I/O"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "io-streams-haproxy" = callPackage ({ mkDerivation, attoparsec, base, bytestring, HUnit, io-streams , network, test-framework, test-framework-hunit, transformers @@ -107770,6 +108885,8 @@ self: { pname = "io-streams-haproxy"; version = "1.0.0.1"; sha256 = "c4c0c512443e4da45f1a0023acc4ccee820e25c1088c06346abfb31b9e6e927f"; + revision = "1"; + editedCabalFile = "88fc85c60d1ac594181bcf6016e7c1ec06c668207618f1a9a5c3304a4113db4b"; libraryHaskellDepends = [ attoparsec base bytestring io-streams network transformers ]; @@ -108216,10 +109333,8 @@ self: { }: mkDerivation { pname = "irc-core"; - version = "2.2.0.1"; - sha256 = "6c160d1073ee40b12d294f1e4dbb4691aedb73150eebf027475db05ce1efa20a"; - revision = "1"; - editedCabalFile = "fd862f303735a1a3c2f7913d5f6834a2711c20aacdabb98515504b8a4de986a6"; + version = "2.2.1"; + sha256 = "ec6275f2076203b7060eb3dfed9b852849efbdf9aa791d1e59b341b5044b52e0"; libraryHaskellDepends = [ attoparsec base base64-bytestring bytestring hashable primitive text time vector @@ -108253,6 +109368,8 @@ self: { pname = "irc-dcc"; version = "2.0.1"; sha256 = "6408a28733743d3463664677c5e3ad72e46c168799dad458988067039f25d2df"; + revision = "1"; + editedCabalFile = "b21158a61f284d320425abc4d727b3374e23f5580fc23e994866ce4669851145"; libraryHaskellDepends = [ attoparsec base binary bytestring io-streams iproute irc-ctcp mtl network path safe-exceptions transformers utf8-string @@ -108662,6 +109779,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "isotope_0_5_0_1" = callPackage + ({ mkDerivation, base, containers, hspec, megaparsec, QuickCheck + , template-haskell, th-lift + }: + mkDerivation { + pname = "isotope"; + version = "0.5.0.1"; + sha256 = "eaa619c278872931b6d2db21faa22684f98ffc62e172e4f352f59e8d4df6eb56"; + libraryHaskellDepends = [ + base containers megaparsec template-haskell th-lift + ]; + testHaskellDepends = [ + base containers hspec megaparsec QuickCheck + ]; + homepage = "https://github.com/Michaelt293/Element-isotopes/blob/master/README.md"; + description = "Isotopic masses and relative abundances"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "ispositive" = callPackage ({ mkDerivation, base, hspec }: mkDerivation { @@ -108922,10 +110059,8 @@ self: { }: mkDerivation { pname = "ivory"; - version = "0.1.0.5"; - sha256 = "437d5bc2fa69037e6fa5beb7d0a7b27f4d7e92404531b698be5a84946294a158"; - revision = "1"; - editedCabalFile = "0fa37aeb8c009a31030e0fe7fbb278907c41909c0f06d74b9942adbf58fc446f"; + version = "0.1.0.6"; + sha256 = "8afde83a2fb9277143e56f6b33edfeedc6a69e98662fd7f16c11eb242eb3538d"; libraryHaskellDepends = [ array base base-compat containers dlist filepath monadLib pretty template-haskell text th-lift @@ -109442,6 +110577,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "jarify" = callPackage + ({ mkDerivation, base, bytestring, directory, filepath, process + , regex-tdfa, temporary, text, zip-archive + }: + mkDerivation { + pname = "jarify"; + version = "1.0"; + sha256 = "c74a5fb188916ed823cfe574e61cb36514c75aa413895674cde9fec8f6019376"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base ]; + executableHaskellDepends = [ + base bytestring directory filepath process regex-tdfa temporary + text zip-archive + ]; + doHaddock = false; + description = "Jarification of Haskell sources"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "jason" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, text , unordered-containers, vector @@ -109671,18 +110827,21 @@ self: { "jenga" = callPackage ({ mkDerivation, aeson, base, bytestring, Cabal, containers - , http-conduit, http-types, text + , http-conduit, http-types, optparse-applicative, text, yaml }: mkDerivation { pname = "jenga"; - version = "0.1.0.0"; - sha256 = "4468d8a1c55009b146b8294ab9ed677b5c7a5e3d0fbae1825a5aebcd509412d0"; + version = "0.1.1.0"; + sha256 = "1339d5148f1715f9437ec839ffc3714e653005bd707db6a03e044f99f1971629"; + revision = "1"; + editedCabalFile = "641105037f2a906a5caa2779b29761381cbfffd522f92988a0743583d425e604"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base bytestring Cabal containers http-conduit http-types text + yaml ]; - executableHaskellDepends = [ base text ]; + executableHaskellDepends = [ base optparse-applicative text ]; homepage = "https://github.com/erikd/jenga"; description = "Generate a cabal freeze file from a stack.yaml"; license = stdenv.lib.licenses.bsd2; @@ -109816,14 +110975,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) jdk;}; - "jni_0_3_0" = callPackage + "jni_0_3_1" = callPackage ({ mkDerivation, base, bytestring, choice, containers, cpphs , inline-c, jdk, singletons, thread-local-storage }: mkDerivation { pname = "jni"; - version = "0.3.0"; - sha256 = "1d92d232180f5ebcb4e6017febc5f7b5320ccc49bcbc3787c62eb94195a60e08"; + version = "0.3.1"; + sha256 = "ed4613bea558554a49e43f94f253eaffe883e217934cb6700fc689ef45dc4c01"; libraryHaskellDepends = [ base bytestring choice containers inline-c singletons thread-local-storage @@ -109876,6 +111035,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "join-api" = callPackage + ({ mkDerivation, aeson, base, bytestring, lens, text, url, wreq }: + mkDerivation { + pname = "join-api"; + version = "0.0.0.0"; + sha256 = "104fed01d6482cfa9659fec3298c5fc6a77e04aaa4fb20ae6a1025e05763569e"; + libraryHaskellDepends = [ + aeson base bytestring lens text url wreq + ]; + homepage = "https://github.com/cotrone/join-api#readme"; + description = "Bindings for Join push notifications"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "joinlist" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -109929,8 +111102,8 @@ self: { }: mkDerivation { pname = "jose"; - version = "0.5.0.2"; - sha256 = "25958a11561f56363bb7dcdcd1ebbc97bf231ee68ed393b117c90fff0cf07abc"; + version = "0.5.0.3"; + sha256 = "d1216c4d6736a802d1c28ca8c2c6fbf18e1a237f971a6d1518fc28f440212a58"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -109952,7 +111125,7 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; - "jose_0_6_0_0" = callPackage + "jose_0_6_0_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, base64-bytestring , bytestring, concise, containers, cryptonite, hspec, lens, memory , monad-time, mtl, network-uri, QuickCheck, quickcheck-instances @@ -109961,8 +111134,8 @@ self: { }: mkDerivation { pname = "jose"; - version = "0.6.0.0"; - sha256 = "91766bdc72d524e43d77cf008176ec2eb38fbdf09e1a457dae1faf78e1e7fe97"; + version = "0.6.0.1"; + sha256 = "a0e6a3c3683df0eb22a552a5a799e3b2ff3e443ca3bdd423c40251b477d72c1a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -109992,30 +111165,6 @@ self: { }: mkDerivation { pname = "jose-jwt"; - version = "0.7.5"; - sha256 = "53e3e9441b7d6d987920749edd61ab15e6e526856822e7d6c27cab302eedcdea"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring cereal containers cryptonite - either memory mtl text time unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring cryptonite doctest either hspec HUnit memory - mtl QuickCheck text unordered-containers vector - ]; - benchmarkHaskellDepends = [ base bytestring criterion cryptonite ]; - homepage = "http://github.com/tekul/jose-jwt"; - description = "JSON Object Signing and Encryption Library"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; - }) {}; - - "jose-jwt_0_7_6" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, cereal - , containers, criterion, cryptonite, doctest, either, hspec, HUnit - , memory, mtl, QuickCheck, text, time, unordered-containers, vector - }: - mkDerivation { - pname = "jose-jwt"; version = "0.7.6"; sha256 = "4aa0a8b3f7ede90e3d490361bd5bfbc918f1323d6c07ace4e53d9e1d68dac94d"; libraryHaskellDepends = [ @@ -110030,7 +111179,7 @@ self: { homepage = "http://github.com/tekul/jose-jwt"; description = "JSON Object Signing and Encryption Library"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; + hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; "jpeg" = callPackage @@ -110107,8 +111256,8 @@ self: { }: mkDerivation { pname = "jsaddle"; - version = "0.8.3.0"; - sha256 = "e1d9838c5481f1dad2a12eecca2d1af0933e02f8f786df6bd1968b865b24f640"; + version = "0.8.3.2"; + sha256 = "a49e1a020ccb35c999001aaa6a64e18b80e5bee374b70e33a287f42f2bc7af75"; libraryHaskellDepends = [ aeson attoparsec base base64-bytestring bytestring containers deepseq filepath ghc-prim http-types lens primitive process ref-tf @@ -110158,8 +111307,8 @@ self: { }: mkDerivation { pname = "jsaddle-warp"; - version = "0.8.3.0"; - sha256 = "1749c9ddc02d140378bcac307bcd6ef198551b274f0087ac982509a0e7d2e693"; + version = "0.8.3.1"; + sha256 = "21dbf42537c5e385c1391e3189fe650ebfc8199ebd5faf8768d8c6eea2c797fa"; libraryHaskellDepends = [ aeson base containers http-types jsaddle stm text time transformers wai wai-websockets warp websockets @@ -110182,8 +111331,8 @@ self: { }: mkDerivation { pname = "jsaddle-webkit2gtk"; - version = "0.8.2.2"; - sha256 = "d9444c5ec1ef4abe74410beddf8a892f97d98d836501dd05169c962a3e108353"; + version = "0.8.3.1"; + sha256 = "83cb2c648661f98a1cc39c06ab35d1994999b028bd4fb9aeb0bb15196a32b94d"; libraryHaskellDepends = [ aeson base bytestring directory gi-gio gi-glib gi-gtk gi-javascriptcore gi-webkit2 haskell-gi-base jsaddle text unix @@ -110201,8 +111350,8 @@ self: { }: mkDerivation { pname = "jsaddle-webkitgtk"; - version = "0.8.3.0"; - sha256 = "dbd6405844157342707a8a82dd03bf150eb017112b684de8ad9f45537b6e10ba"; + version = "0.8.3.1"; + sha256 = "0d7865a538ab29b3986b0d3b268f765f3120be9218ae4077f890fef956238ba8"; libraryHaskellDepends = [ aeson base bytestring directory gi-glib gi-gtk gi-javascriptcore gi-webkit haskell-gi-base jsaddle text unix @@ -110217,8 +111366,8 @@ self: { ({ mkDerivation, aeson, base, bytestring, jsaddle }: mkDerivation { pname = "jsaddle-wkwebview"; - version = "0.8.3.0"; - sha256 = "007886eaa4cfa3a2c04828398448602eb1bcc697dfba3a890f5f577753ea13f5"; + version = "0.8.3.2"; + sha256 = "33952c34b28eb677b2deed60a9ea374e2f20cac45f18df4a63b6c8bd75e1c528"; libraryHaskellDepends = [ aeson base bytestring jsaddle ]; description = "Interface for JavaScript that works with GHCJS and GHC"; license = stdenv.lib.licenses.mit; @@ -110758,8 +111907,8 @@ self: { pname = "json-schema"; version = "0.7.4.1"; sha256 = "560d6a17d6eab734f43d329e51967e3ed62f8df2a6fea4a92d06359fe77d7c96"; - revision = "7"; - editedCabalFile = "c3b107899b4297971b6b2cb913b3ace26f6d847844c6a7a6b6fe9f8dc2a9a6f7"; + revision = "8"; + editedCabalFile = "2c6fdb7778fcf1f734463094c6a0a500ce885229b1eba3c1fc0f828e99745714"; libraryHaskellDepends = [ aeson base containers generic-aeson generic-deriving mtl scientific text time unordered-containers vector @@ -110778,8 +111927,8 @@ self: { }: mkDerivation { pname = "json-sop"; - version = "0.2.0.1"; - sha256 = "ca02139ca3a5041225f684080067c5ec8c5e0ce3421a5eea9d273db377d005c9"; + version = "0.2.0.3"; + sha256 = "3065f11df636f9b72d988247bcc1273de9155255d8b31ed9105929e2ab67c22b"; libraryHaskellDepends = [ aeson base generics-sop lens-sop tagged text time transformers unordered-containers vector @@ -111252,17 +112401,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "jvm_0_2_1" = callPackage + "jvm_0_2_2" = callPackage ({ mkDerivation, base, bytestring, choice, criterion - , distributed-closure, hspec, jni, singletons, text, vector + , distributed-closure, hspec, jni, singletons, template-haskell + , text, vector }: mkDerivation { pname = "jvm"; - version = "0.2.1"; - sha256 = "73e7c287e7c31bbc62a61e43de3f2e47a76a161594ed71cd1ba190823bf66faf"; + version = "0.2.2"; + sha256 = "53b15e0cc64bf0f8e462ed4083dc0438d1cb545f234a59c312e853c4f130d1f5"; libraryHaskellDepends = [ - base bytestring choice distributed-closure jni singletons text - vector + base bytestring choice distributed-closure jni singletons + template-haskell text vector ]; testHaskellDepends = [ base bytestring hspec text ]; benchmarkHaskellDepends = [ base criterion jni ]; @@ -111578,6 +112728,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "kan-extensions_5_0_2" = callPackage + ({ mkDerivation, adjunctions, array, base, comonad, containers + , contravariant, distributive, fail, free, mtl, semigroupoids + , tagged, transformers + }: + mkDerivation { + pname = "kan-extensions"; + version = "5.0.2"; + sha256 = "1c9ede8595424209944e59fd46c1d2edb654758be9a45c1c48a4d3cedf42482e"; + libraryHaskellDepends = [ + adjunctions array base comonad containers contravariant + distributive fail free mtl semigroupoids tagged transformers + ]; + homepage = "http://github.com/ekmett/kan-extensions/"; + description = "Kan extensions, Kan lifts, various forms of the Yoneda lemma, and (co)density (co)monads"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "kangaroo" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -111741,6 +112910,7 @@ self: { homepage = "https://github.com/krapsh/kraps-haskell"; description = "Haskell bindings for Spark Dataframes and Datasets"; license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "karver" = callPackage @@ -111885,8 +113055,8 @@ self: { }: mkDerivation { pname = "kawhi"; - version = "0.2.1"; - sha256 = "ad98cce9b302fae9fca60ba25f9256b5c4db7e3b8340225a8e3041f45af0f677"; + version = "0.2.3"; + sha256 = "c2262bc98e8bab4379a4c1b18846c844f6da9a5136bb08fa7f7306aa61fac046"; libraryHaskellDepends = [ aeson base bytestring exceptions http-client http-conduit http-types mtl safe scientific text @@ -111896,20 +113066,20 @@ self: { scientific smallcheck tasty tasty-hunit tasty-quickcheck tasty-smallcheck text ]; - homepage = "https://github.com/hamsterdam/kawhi"; + homepage = "https://github.com/thunky-monk/kawhi"; description = "stats.NBA.com library"; license = stdenv.lib.licenses.mit; }) {}; - "kawhi_0_2_2" = callPackage + "kawhi_0_3_0" = callPackage ({ mkDerivation, aeson, base, bytestring, exceptions, http-client , http-conduit, http-types, mtl, safe, scientific, smallcheck , tasty, tasty-hunit, tasty-quickcheck, tasty-smallcheck, text }: mkDerivation { pname = "kawhi"; - version = "0.2.2"; - sha256 = "4e97700861c2113992c656272c6b95a30968352e40199732f6122cb25dadefff"; + version = "0.3.0"; + sha256 = "2321387a3ddaa17c09db3a8e7a41a39f8e211467bd80bccd73791de8fca2a44f"; libraryHaskellDepends = [ aeson base bytestring exceptions http-client http-conduit http-types mtl safe scientific text @@ -112337,8 +113507,8 @@ self: { }: mkDerivation { pname = "keera-hails-reactivevalues"; - version = "0.2.2.1"; - sha256 = "27785b27fafb6249a538d400dd47405fa66fc5267de1f17b7ff7a4a4fe738566"; + version = "0.2.2.2"; + sha256 = "10c550e5c6569089d0b4f2306c1403b81863d745059888c1bf4956561f209d47"; libraryHaskellDepends = [ base contravariant ]; testHaskellDepends = [ base directory filepath hlint HUnit mtl process QuickCheck @@ -112359,12 +113529,12 @@ self: { , keera-hails-mvc-solutions-config, keera-hails-mvc-solutions-gtk , keera-hails-mvc-view-gtk, keera-hails-reactive-gtk , keera-hails-reactivevalues, MissingK, mtl, network, process, SDL - , SDL-mixer, SDL_mixer, setlocale, time, utf8-string + , SDL-mixer, setlocale, time, utf8-string }: mkDerivation { pname = "keera-posture"; - version = "0.2.3"; - sha256 = "ab35dd2ebf2cd49602cc47e40a35d79f3a2f113214689ad2306ac09d0aee6952"; + version = "0.2.4.1"; + sha256 = "7d23ba5b4558a0c770e8c84f7d28e7a1a2914eae81160cfec34ac1cd3a248cbd"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -112378,12 +113548,11 @@ self: { keera-hails-reactivevalues MissingK mtl network process SDL SDL-mixer setlocale time utf8-string ]; - executableSystemDepends = [ SDL_mixer ]; homepage = "http://keera.co.uk/projects/keera-posture"; description = "Get notifications when your sitting posture is inappropriate"; license = "unknown"; hydraPlatforms = stdenv.lib.platforms.none; - }) {inherit (pkgs) SDL_mixer;}; + }) {}; "keiretsu" = callPackage ({ mkDerivation, aeson, ansi-terminal, async, base, bytestring @@ -112828,8 +113997,8 @@ self: { }: mkDerivation { pname = "knead"; - version = "0.2.1"; - sha256 = "0aa766ebd9b72370dd18b1f7e3bef2d67c6575b36d9f47467ab54997bfe88f0d"; + version = "0.2.2"; + sha256 = "6ff6641873365a20a4b1e6a20b89f250f1fb822244978af63a14b3527bb57e6e"; libraryHaskellDepends = [ base llvm-extra llvm-tf storable-record storable-tuple transformers utility-ht @@ -114274,6 +115443,32 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "language-c-quote_0_12" = callPackage + ({ mkDerivation, alex, array, base, bytestring, containers + , exception-mtl, exception-transformers, filepath, happy + , haskell-src-meta, HUnit, mainland-pretty, mtl, srcloc, syb + , symbol, template-haskell, test-framework, test-framework-hunit + }: + mkDerivation { + pname = "language-c-quote"; + version = "0.12"; + sha256 = "120a480a7a141fc544e54c654a3a8662966941d1110c8207a37fd49f745c9d93"; + libraryHaskellDepends = [ + array base bytestring containers exception-mtl + exception-transformers filepath haskell-src-meta mainland-pretty + mtl srcloc syb symbol template-haskell + ]; + libraryToolDepends = [ alex happy ]; + testHaskellDepends = [ + base bytestring HUnit mainland-pretty srcloc symbol test-framework + test-framework-hunit + ]; + homepage = "https://github.com/mainland/language-c-quote"; + description = "C/CUDA/OpenCL/Objective-C quasiquoting library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "language-cil" = callPackage ({ mkDerivation, base, bool-extras }: mkDerivation { @@ -114362,6 +115557,36 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; + "language-dockerfile_0_3_6_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, directory, filepath, free + , Glob, hspec, HUnit, mtl, parsec, pretty, process, QuickCheck + , ShellCheck, split, template-haskell, test-framework + , test-framework-hunit, text, th-lift, th-lift-instances + , transformers, unordered-containers, yaml + }: + mkDerivation { + pname = "language-dockerfile"; + version = "0.3.6.0"; + sha256 = "f68edd01fdc2d779d7defd6c33663b7c7358c489988eae075b4a2d1cd0b71bb7"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring directory filepath free Glob mtl parsec + pretty ShellCheck split template-haskell text th-lift + th-lift-instances transformers unordered-containers yaml + ]; + testHaskellDepends = [ + aeson base bytestring directory filepath free Glob hspec HUnit mtl + parsec pretty process QuickCheck ShellCheck split template-haskell + test-framework test-framework-hunit text th-lift th-lift-instances + transformers unordered-containers yaml + ]; + homepage = "https://github.com/beijaflor-io/language-dockerfile#readme"; + description = "Dockerfile linter, parser, pretty-printer and embedded DSL"; + license = stdenv.lib.licenses.gpl3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "language-dot" = callPackage ({ mkDerivation, base, mtl, parsec, pretty }: mkDerivation { @@ -115817,8 +117042,8 @@ self: { }: mkDerivation { pname = "legion-discovery"; - version = "1.0.0.0"; - sha256 = "7be93501fda9e9f37fbd90db3692ea1bf36069b1bb80f34f6663e339f3104854"; + version = "1.0.0.1"; + sha256 = "ebe9fb048c330db465871731ec541c1f8fe9485f24f49fd1b93224c48aa907e9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -115862,8 +117087,10 @@ self: { }: mkDerivation { pname = "legion-extra"; - version = "0.1.2.1"; - sha256 = "696c33bc6dd19dbc6320a637359675bfc3090b9ad05d92fd356b4242f8832519"; + version = "0.1.2.2"; + sha256 = "2fd6fc409ebad2e2cea15b99da2d8f196ad2d1f773144c0587b199e8def3dcdc"; + revision = "1"; + editedCabalFile = "1b18202d64c6f32b490c30b4d845d3e87e0fd3b14617e94a2cdbda2c6ca8f8df"; libraryHaskellDepends = [ aeson attoparsec base binary bytestring canteven-log conduit containers data-default-class data-dword directory legion network @@ -115956,6 +117183,7 @@ self: { homepage = "http://leksah.org"; description = "Metadata collection for leksah"; license = "GPL"; + hydraPlatforms = stdenv.lib.platforms.none; broken = true; }) {bin-package-db = null;}; @@ -116017,6 +117245,46 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "lens_4_15_2" = callPackage + ({ mkDerivation, array, base, base-orphans, bifunctors, bytestring + , Cabal, cabal-doctest, comonad, containers, contravariant + , criterion, deepseq, directory, distributive, doctest, exceptions + , filepath, free, generic-deriving, ghc-prim, hashable, hlint + , HUnit, kan-extensions, mtl, nats, parallel, profunctors + , QuickCheck, reflection, semigroupoids, semigroups, simple-reflect + , tagged, template-haskell, test-framework, test-framework-hunit + , test-framework-quickcheck2, test-framework-th, text, transformers + , transformers-compat, unordered-containers, vector, void + }: + mkDerivation { + pname = "lens"; + version = "4.15.2"; + sha256 = "5b1556650572ce05cacb7bc32f5f309e0fc468f27c6a9f553e606a841f8cd72a"; + setupHaskellDepends = [ base Cabal cabal-doctest filepath ]; + libraryHaskellDepends = [ + array base base-orphans bifunctors bytestring comonad containers + contravariant distributive exceptions filepath free ghc-prim + hashable kan-extensions mtl parallel profunctors reflection + semigroupoids semigroups tagged template-haskell text transformers + transformers-compat unordered-containers vector void + ]; + testHaskellDepends = [ + base bytestring containers deepseq directory doctest filepath + generic-deriving hlint HUnit mtl nats parallel QuickCheck + semigroups simple-reflect test-framework test-framework-hunit + test-framework-quickcheck2 test-framework-th text transformers + unordered-containers vector + ]; + benchmarkHaskellDepends = [ + base bytestring comonad containers criterion deepseq + generic-deriving transformers unordered-containers vector + ]; + homepage = "http://github.com/ekmett/lens/"; + description = "Lenses, Folds and Traversals"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "lens-accelerate" = callPackage ({ mkDerivation, accelerate, base, lens }: mkDerivation { @@ -116030,16 +117298,15 @@ self: { }) {}; "lens-action" = callPackage - ({ mkDerivation, base, comonad, contravariant, directory, doctest - , filepath, lens, mtl, profunctors, semigroupoids, semigroups - , transformers + ({ mkDerivation, base, Cabal, cabal-doctest, comonad, contravariant + , directory, doctest, filepath, lens, mtl, profunctors + , semigroupoids, semigroups, transformers }: mkDerivation { pname = "lens-action"; - version = "0.2.0.2"; - sha256 = "e26c70b2de68a7cfbce97bcdabdcdfb45b2c50708207a14f8dd24c3e29c6d371"; - revision = "2"; - editedCabalFile = "f2f18c678cce0e700a1cb84a093a4643df46298adc5eb2ab6210f6fdcd7e0bfc"; + version = "0.2.1"; + sha256 = "7329f50d9d61911cbcd2d4b9501ec946efddc94c7374c0eee430af53135c651d"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base comonad contravariant lens mtl profunctors semigroupoids semigroups transformers @@ -116051,23 +117318,21 @@ self: { }) {}; "lens-aeson" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, directory - , doctest, filepath, generic-deriving, lens, scientific, semigroups - , simple-reflect, text, unordered-containers, vector + ({ mkDerivation, aeson, attoparsec, base, bytestring, Cabal + , cabal-doctest, doctest, generic-deriving, lens, scientific + , semigroups, simple-reflect, text, unordered-containers, vector }: mkDerivation { pname = "lens-aeson"; - version = "1.0.0.5"; - sha256 = "65faad5b75852209b4c6df43ae1f7460c2b94bf3bbc10b5cd529f43c743a5d9f"; - revision = "5"; - editedCabalFile = "6444dd1026845cecf8a5ab70d783392ac2be7e9fd45419df2c4e9fa5cb17edb7"; + version = "1.0.1"; + sha256 = "5dd2aaa608770b13313e5240cf7a03b3b32b40e8a63a65ca0ed13c488f320dbd"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ aeson attoparsec base bytestring lens scientific text unordered-containers vector ]; testHaskellDepends = [ - base directory doctest filepath generic-deriving semigroups - simple-reflect + base doctest generic-deriving semigroups simple-reflect ]; homepage = "http://github.com/lens/lens-aeson/"; description = "Law-abiding lenses for aeson"; @@ -116208,8 +117473,8 @@ self: { ({ mkDerivation, base, fclabels, generics-sop, transformers }: mkDerivation { pname = "lens-sop"; - version = "0.2.0.1"; - sha256 = "13a335a49acfef59ab8d39845a5bb174826c342c1705a96caa0c7d1fba6d7966"; + version = "0.2.0.2"; + sha256 = "7f6800088634aeb6788c1bc65dcdaeb7f0c8cdaee288a24bf9f946cc59496d99"; libraryHaskellDepends = [ base fclabels generics-sop transformers ]; @@ -116404,6 +117669,32 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) leveldb;}; + "leveldb-haskell_0_6_5" = callPackage + ({ mkDerivation, base, bytestring, data-default, directory + , exceptions, filepath, leveldb, mtl, QuickCheck, resourcet, tasty + , tasty-quickcheck, temporary, transformers + }: + mkDerivation { + pname = "leveldb-haskell"; + version = "0.6.5"; + sha256 = "a417b088068deba73a77936c1345302bac7ce06019fb10254857cafad1d76c28"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring data-default exceptions filepath resourcet + transformers + ]; + librarySystemDepends = [ leveldb ]; + testHaskellDepends = [ + base bytestring data-default directory exceptions mtl QuickCheck + tasty tasty-quickcheck temporary transformers + ]; + homepage = "http://github.com/kim/leveldb-haskell"; + description = "Haskell bindings to LevelDB"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) leveldb;}; + "leveldb-haskell-fork" = callPackage ({ mkDerivation, base, bytestring, data-default, filepath, hspec , hspec-expectations, leveldb, mtl, process, QuickCheck, resourcet @@ -116874,32 +118165,33 @@ self: { "liblawless" = callPackage ({ mkDerivation, aeson, base, base-unicode-symbols, binary , boomerang, bytestring, concurrent-machines, containers - , containers-unicode-symbols, contravariant, data-default - , data-textual, dns, exceptions, filepath, hjsonschema, lens - , machines, managed, monad-control, mtl, network, network-ip - , parsers, pathtype, protolude, QuickCheck, random, semigroups, stm - , stm-containers, temporary, test-framework - , test-framework-quickcheck2, test-framework-th, text, text-icu - , text-icu-normalized, text-printer, time, transformers, zippers + , containers-unicode-symbols, contravariant, data-textual, dns + , exceptions, filepath, hjsonschema, lens, machines, managed + , monad-control, mtl, network, network-ip, parsers, pathtype + , protolude, QuickCheck, random, semigroups, stm, stm-containers + , temporary, test-framework, test-framework-quickcheck2 + , test-framework-th, text, text-icu, text-icu-normalized + , text-printer, time, transformers, zippers }: mkDerivation { pname = "liblawless"; - version = "0.20.1"; - sha256 = "df2ce59748a56fb7886109c7c7dd0bdb47eeba41fa3d0aeb0b7d8e7239528924"; + version = "0.21.3"; + sha256 = "a72db320e907affe6105d3a6a8403ed57675a94979637de717f7a2c968995010"; libraryHaskellDepends = [ aeson base base-unicode-symbols binary boomerang bytestring concurrent-machines containers containers-unicode-symbols - contravariant data-default data-textual dns exceptions hjsonschema - lens machines managed monad-control mtl network network-ip parsers - pathtype protolude QuickCheck random semigroups stm stm-containers - temporary text text-icu text-icu-normalized text-printer time - transformers zippers + contravariant data-textual dns exceptions hjsonschema lens machines + managed monad-control mtl network network-ip parsers pathtype + protolude QuickCheck random semigroups stm stm-containers temporary + text text-icu text-icu-normalized text-printer time transformers + zippers ]; testHaskellDepends = [ - aeson base binary bytestring exceptions filepath network QuickCheck - semigroups stm temporary test-framework test-framework-quickcheck2 + aeson base binary bytestring exceptions filepath QuickCheck + temporary test-framework test-framework-quickcheck2 test-framework-th text time transformers ]; + homepage = "https://gitlab.com/theunixman/liblawless"; description = "Prelude based on protolude for GHC 8 and beyond"; license = stdenv.lib.licenses.gpl3; hydraPlatforms = stdenv.lib.platforms.none; @@ -116924,8 +118216,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "libltdl"; - version = "0.1.1"; - sha256 = "9327d7108607fecc30803217eb329465a569a1c26c564b49800ceb08e362f828"; + version = "0.1.1.1"; + sha256 = "810c7ca2a543efd88778d366f3fcf4e61c201409aa2b7e5ab459bb4608790c3f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base ]; @@ -117663,6 +118955,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "linden" = callPackage + ({ mkDerivation, aeson, base, bifunctors, bytestring, containers + , deepseq, delay, exceptions, filepath, hashable, hedis, http-types + , lens, monad-supply, mtl, random-fu, rosezipper, SHA, text, time + , unordered-containers, uuid, wai, wai-app-static, wai-cors + , wai-extra, warp, zlib + }: + mkDerivation { + pname = "linden"; + version = "0"; + sha256 = "6a1a6c0f3b7d8c20ffd0c9bdc8bfe9bd51a8823995209c8d98344732ebeaa917"; + revision = "1"; + editedCabalFile = "4e5ef43e4f445109a8bde7e5dd87588bf87ccc03bf672fda44e7f95c05f46c2f"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bifunctors bytestring containers deepseq delay + exceptions filepath hashable hedis http-types lens monad-supply mtl + random-fu rosezipper SHA text time unordered-containers uuid wai + wai-app-static wai-cors wai-extra zlib + ]; + executableHaskellDepends = [ + base containers hashable mtl random-fu rosezipper text uuid warp + ]; + homepage = "https://oss.xkcd.com/"; + description = "Zen gardening, based on l-systems"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "lindenmayer" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -117699,6 +119020,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "line_3_0_1" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, bytestring + , cryptohash-sha256, hspec, hspec-wai, http-conduit, http-types + , QuickCheck, quickcheck-instances, raw-strings-qq, scotty, text + , time, transformers, wai + }: + mkDerivation { + pname = "line"; + version = "3.0.1"; + sha256 = "011bab2a638f6409b4db7b2b17a3e7cc649354741fa0aa5bdda293c5ea788239"; + libraryHaskellDepends = [ + aeson base base64-bytestring bytestring cryptohash-sha256 + http-conduit http-types scotty text time transformers wai + ]; + testHaskellDepends = [ + aeson base base64-bytestring bytestring cryptohash-sha256 hspec + hspec-wai QuickCheck quickcheck-instances raw-strings-qq scotty + text time transformers + ]; + homepage = "https://github.com/noraesae/line"; + description = "Haskell SDK for the LINE API"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "line-break" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -117742,19 +119088,18 @@ self: { "linear" = callPackage ({ mkDerivation, adjunctions, base, base-orphans, binary, bytes - , bytestring, cereal, containers, deepseq, directory, distributive - , doctest, filepath, ghc-prim, hashable, HUnit, lens, reflection - , semigroupoids, semigroups, simple-reflect, tagged + , bytestring, Cabal, cabal-doctest, cereal, containers, deepseq + , distributive, doctest, ghc-prim, hashable, HUnit, lens + , reflection, semigroupoids, semigroups, simple-reflect, tagged , template-haskell, test-framework, test-framework-hunit , transformers, transformers-compat, unordered-containers, vector , void }: mkDerivation { pname = "linear"; - version = "1.20.5"; - sha256 = "61d8b7242f1e7c27925df7ffe1aa8b1fd732e61598f3af48b9999d8fb464cc0d"; - revision = "1"; - editedCabalFile = "59fb06c2c7326ffedc00c3b54a89fecf6bf664e9bea0845f5cd933249c0113d5"; + version = "1.20.6"; + sha256 = "151531e7961d2d7d198dadebb4b67121b6dcfbffda40fde906f3e46c9e1999f5"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ adjunctions base base-orphans binary bytes cereal containers deepseq distributive ghc-prim hashable lens reflection @@ -117762,8 +119107,8 @@ self: { transformers-compat unordered-containers vector void ]; testHaskellDepends = [ - base binary bytestring directory doctest filepath HUnit lens - simple-reflect test-framework test-framework-hunit + base binary bytestring deepseq doctest HUnit lens reflection + simple-reflect test-framework test-framework-hunit vector ]; homepage = "http://github.com/ekmett/linear/"; description = "Linear Algebra"; @@ -118081,18 +119426,24 @@ self: { "linklater" = callPackage ({ mkDerivation, aeson, base, base-prelude, bytestring, containers - , http-types, text, wai, wreq + , exceptions, http-types, lens, lens-aeson, mtl, safe-exceptions + , tasty, tasty-hunit, text, uri-bytestring, wai, wreq }: mkDerivation { pname = "linklater"; - version = "3.2.0.0"; - sha256 = "d9e5370d04d8849aa4c8df68d9a3bc7867c0a679f1a66f858be585e687b98695"; + version = "4.0.0.2"; + sha256 = "1f51757dc255643d62392aaeb9263610ca5a52c83c9fa001be0a7e26b478d34f"; libraryHaskellDepends = [ - aeson base base-prelude bytestring containers http-types text wai - wreq + aeson base base-prelude bytestring containers exceptions http-types + lens lens-aeson mtl safe-exceptions text uri-bytestring wai wreq + ]; + testHaskellDepends = [ + aeson base base-prelude bytestring containers exceptions http-types + lens lens-aeson mtl safe-exceptions tasty tasty-hunit text + uri-bytestring wai wreq ]; homepage = "https://github.com/hlian/linklater"; - description = "The fast and fun way to write Slack.com bots"; + description = "A Haskell library for the Slack API"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; }) {}; @@ -118359,6 +119710,7 @@ self: { ]; description = "Labeled File System interface for LIO"; license = "GPL"; + hydraPlatforms = [ "x86_64-darwin" ]; }) {}; "lio-simple" = callPackage @@ -118430,13 +119782,13 @@ self: { , cmdargs, containers, deepseq, directory, dotgen, fgl , fgl-visualize, filemanip, filepath, ghc-prim, hashable, intern , located-base, mtl, ocaml, parallel, parsec, pretty, process, syb - , tasty, tasty-hunit, tasty-rerun, text, text-format, transformers - , unordered-containers, z3 + , tasty, tasty-hunit, tasty-rerun, text, text-format, time + , transformers, unordered-containers, z3 }: mkDerivation { pname = "liquid-fixpoint"; - version = "0.5.0.1"; - sha256 = "7e14475ac33ed81983fb5b0fa2a1ad34ae0f449983f0a9cd432a7aa37875e53c"; + version = "0.6.0.1"; + sha256 = "14efb301b7e80f3a2fce43355aa0681935285ef933464b7ec31475ccd9d570fd"; configureFlags = [ "-fbuild-external" ]; isLibrary = true; isExecutable = true; @@ -118445,7 +119797,7 @@ self: { binary boxes bytestring cereal cmdargs containers deepseq directory dotgen fgl fgl-visualize filemanip filepath ghc-prim hashable intern located-base mtl parallel parsec pretty process syb text - text-format transformers unordered-containers + text-format time transformers unordered-containers ]; executableHaskellDepends = [ base ]; executableSystemDepends = [ ocaml ]; @@ -118460,41 +119812,41 @@ self: { }) {inherit (pkgs) ocaml; inherit (pkgs) z3;}; "liquidhaskell" = callPackage - ({ mkDerivation, aeson, array, base, bifunctors, bytestring, Cabal - , cereal, cmdargs, containers, cpphs, daemons, data-default - , deepseq, Diff, directory, filepath, fingertree, ghc, ghc-paths - , hashable, hpc, hscolour, liquid-fixpoint, located-base, mtl - , network, optparse-applicative, parsec, pretty, process, stm, syb - , tagged, tasty, tasty-ant-xml, tasty-hunit, tasty-rerun - , template-haskell, temporary, text, time, transformers, unix + ({ mkDerivation, aeson, array, base, bifunctors, binary, bytestring + , Cabal, cereal, cmdargs, containers, data-default, deepseq, Diff + , directory, exceptions, filepath, fingertree, ghc, ghc-boot + , ghc-paths, ghc-prim, hashable, hint, hpc, hscolour + , liquid-fixpoint, located-base, mtl, optparse-applicative, parsec + , pretty, process, QuickCheck, stm, syb, tagged, tasty + , tasty-ant-xml, tasty-hunit, tasty-rerun, template-haskell + , temporary, text, text-format, th-lift, time, transformers , unordered-containers, vector, z3 }: mkDerivation { pname = "liquidhaskell"; - version = "0.6.0.0"; - sha256 = "4b5d6fc321c7b92b80b84bda67fc34e3f37f44d23dd60828ba9d9e3d7d645696"; - revision = "1"; - editedCabalFile = "3de51855d7c0c9dd89e345a9a27ff151baec1140b9e464ae91604cb5a885f4c9"; + version = "0.8.0.0"; + sha256 = "2be2896ac98151fa58e0023da586387925163f48b33def001a949e96be2190cb"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson array base bifunctors bytestring Cabal cereal cmdargs - containers cpphs data-default deepseq Diff directory filepath - fingertree ghc ghc-paths hashable hpc hscolour liquid-fixpoint - located-base mtl parsec pretty process syb template-haskell - temporary text time unordered-containers vector + aeson array base bifunctors binary bytestring Cabal cereal cmdargs + containers data-default deepseq Diff directory exceptions filepath + fingertree ghc ghc-boot ghc-paths ghc-prim hashable hpc hscolour + liquid-fixpoint located-base mtl parsec pretty process QuickCheck + syb template-haskell temporary text text-format th-lift time + transformers unordered-containers vector ]; executableHaskellDepends = [ - base bytestring cereal cmdargs daemons data-default deepseq - directory ghc liquid-fixpoint located-base network pretty process - unix unordered-containers + base cmdargs deepseq ghc ghc-boot hint liquid-fixpoint located-base + pretty process time ]; testHaskellDepends = [ - base containers directory filepath mtl optparse-applicative process - stm tagged tasty tasty-ant-xml tasty-hunit tasty-rerun transformers + base containers directory filepath liquid-fixpoint mtl + optparse-applicative parsec process stm syb tagged tasty + tasty-ant-xml tasty-hunit tasty-rerun text transformers ]; testSystemDepends = [ z3 ]; - homepage = "http://goto.ucsd.edu/liquidhaskell"; + homepage = "https://github.com/ucsd-progsys/liquidhaskell"; description = "Liquid Types for Haskell"; license = stdenv.lib.licenses.bsd3; hydraPlatforms = stdenv.lib.platforms.none; @@ -119062,8 +120414,8 @@ self: { }: mkDerivation { pname = "llvm-extra"; - version = "0.7.1"; - sha256 = "02b54ca12c6dbcb24589bbc93819a4857f169b811e15a6d00d05b7e42f1f6505"; + version = "0.7.2"; + sha256 = "96dcf825e88f6aff17939c885e5892f42636dc4c5745fbafa8797726c3779fa7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -119463,6 +120815,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "loc" = callPackage + ({ mkDerivation, base, containers, doctest, hedgehog, loc-test }: + mkDerivation { + pname = "loc"; + version = "0.1.2.0"; + sha256 = "09de934a2cf447fc6677261ca9dd04ec7443a8c5f66af688200209107d48204f"; + libraryHaskellDepends = [ base containers ]; + testHaskellDepends = [ base containers doctest hedgehog loc-test ]; + homepage = "https://github.com/chris-martin/haskell-libraries"; + description = "Types representing line and column positions and ranges in text files"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "loc-test" = callPackage + ({ mkDerivation, base, containers, hedgehog, loc }: + mkDerivation { + pname = "loc-test"; + version = "0.1.2.0"; + sha256 = "5ef9fb070181d019fbe963916b9d894fcd90e1850b98df9dda15e7f9dee4c3ba"; + libraryHaskellDepends = [ base containers hedgehog loc ]; + homepage = "https://github.com/chris-martin/haskell-libraries"; + description = "Test-related utilities related to the /loc/ package"; + license = stdenv.lib.licenses.asl20; + }) {}; + "local-address" = callPackage ({ mkDerivation, base, network }: mkDerivation { @@ -119671,7 +121048,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "log_0_8" = callPackage + "log_0_9_0_0" = callPackage ({ mkDerivation, aeson, base, bloodhound, bytestring, exceptions , http-client, http-types, log-base, log-elasticsearch , log-postgres, process, random, tasty, tasty-hunit, text, time @@ -119679,10 +121056,8 @@ self: { }: mkDerivation { pname = "log"; - version = "0.8"; - sha256 = "3c48e377d8e25cb6874c1496d8635342dc3c57843d45f1347b4fdfb110d42a52"; - revision = "1"; - editedCabalFile = "110b0297ddce3744cffe2749373311677df01d27531bbec528a27744d7aed1ea"; + version = "0.9.0.0"; + sha256 = "21ac6c5e03d3407bb8d0fa58a0be23267496dcbdfc6d980ceca5e07cf5f3199a"; libraryHaskellDepends = [ base log-base log-elasticsearch log-postgres ]; @@ -119778,7 +121153,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "log-elasticsearch_0_8_1" = callPackage + "log-elasticsearch_0_9_0_0" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring , bloodhound, bytestring, deepseq, http-client, http-client-tls , log-base, semigroups, text, text-show, time, transformers @@ -119786,8 +121161,8 @@ self: { }: mkDerivation { pname = "log-elasticsearch"; - version = "0.8.1"; - sha256 = "b0a67b2335f2d1a075bf611b723572db81075c69a3f4a4a06ab35906341f8281"; + version = "0.9.0.0"; + sha256 = "0c25361a3f2af7ea01be3f2f2a617d691c64d334b7e2c0f91b9101ec670db900"; libraryHaskellDepends = [ aeson aeson-pretty base base64-bytestring bloodhound bytestring deepseq http-client http-client-tls log-base semigroups text @@ -119854,8 +121229,8 @@ self: { }: mkDerivation { pname = "log-warper"; - version = "1.1.1"; - sha256 = "6a9c42649e8ebaa3959bed7faccbc22c40d78f0d626ca8c41673284d3ce4ee7c"; + version = "1.1.2"; + sha256 = "b66a1eba34ca749932d8525750c911da4c6847ddf5420581037c13f538f52748"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -121115,6 +122490,7 @@ self: { homepage = "https://github.com/phaazon/luminance"; description = "Type-safe, type-level and stateless graphics framework"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "luminance-samples" = callPackage @@ -121202,6 +122578,8 @@ self: { pname = "lvmlib"; version = "1.1"; sha256 = "6f99e1ed437d45ecdbb019185d24bc920f7965f279f3b1cec268d51350c622d3"; + revision = "1"; + editedCabalFile = "93202794dad7345f097bd54b57352256cba8998251865d2909d9576d0bc20f2e"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -121311,6 +122689,8 @@ self: { pname = "lzma"; version = "0.0.0.3"; sha256 = "af8321c3511bde3e2745093fa3bd74c642e386db7d2e7c43b3a54814f1338144"; + revision = "1"; + editedCabalFile = "4d6412e760b11a7a48e7558ed8468a380a313a7bc7c0a37c8872737d375d0979"; libraryHaskellDepends = [ base bytestring ]; librarySystemDepends = [ lzma ]; testHaskellDepends = [ @@ -121389,8 +122769,8 @@ self: { pname = "lzma-streams"; version = "0.1.0.0"; sha256 = "b6c90e493f6c367f79c1cee6c3ed978c3515139bf2c7174ed083a1cf76071af1"; - revision = "1"; - editedCabalFile = "7f2c0b8a7b6134789e1e2117ba70d536a050f3cc5cc6a438ab69ffd28785046c"; + revision = "2"; + editedCabalFile = "6bad6ae0c18fb12ee70a5d3b430c6fda1eb1a99702196646dd7aa37c8a0f1319"; libraryHaskellDepends = [ base bytestring io-streams lzma ]; testHaskellDepends = [ base bytestring HUnit io-streams QuickCheck test-framework @@ -121509,22 +122889,22 @@ self: { }) {}; "machines" = callPackage - ({ mkDerivation, adjunctions, base, comonad, conduit - , conduit-combinators, containers, criterion, directory - , distributive, doctest, filepath, free, mtl, pipes, pointed - , profunctors, semigroupoids, semigroups, transformers - , transformers-compat, void + ({ mkDerivation, adjunctions, base, Cabal, cabal-doctest, comonad + , conduit, conduit-combinators, containers, criterion, distributive + , doctest, mtl, pipes, pointed, profunctors, semigroupoids + , semigroups, transformers, transformers-compat, void }: mkDerivation { pname = "machines"; - version = "0.6.1"; - sha256 = "a58b84d51a62d3944ac4706ba9163e5b34e27c4b241ab7caa4328b2ad189dc56"; + version = "0.6.2"; + sha256 = "1c5043b5bc289fc91d8cab90b48a3b807237c2b22719eba08faa62647233645c"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ - adjunctions base comonad containers distributive free mtl pointed + adjunctions base comonad containers distributive mtl pointed profunctors semigroupoids semigroups transformers transformers-compat void ]; - testHaskellDepends = [ base directory doctest filepath ]; + testHaskellDepends = [ base doctest ]; benchmarkHaskellDepends = [ base conduit conduit-combinators criterion mtl pipes ]; @@ -121712,20 +123092,20 @@ self: { "madlang" = callPackage ({ mkDerivation, ansi-wl-pprint, base, composition, containers - , criterion, directory, file-embed-poly, hspec, hspec-megaparsec + , criterion, directory, file-embed, hspec, hspec-megaparsec , megaparsec, microlens, MonadRandom, mtl, optparse-applicative , random-shuffle, template-haskell, text }: mkDerivation { pname = "madlang"; - version = "2.3.0.3"; - sha256 = "8382c746f0508e56656705245d593e3ab07f158c6e61a447d88d77753ff0cf28"; + version = "2.3.0.6"; + sha256 = "c65ec340a330ac3329173c8d07d494e000d2d1c7da6b7f485a32534bbba27790"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-wl-pprint base composition containers directory - file-embed-poly megaparsec microlens MonadRandom mtl - optparse-applicative random-shuffle template-haskell text + ansi-wl-pprint base composition containers directory file-embed + megaparsec microlens MonadRandom mtl optparse-applicative + random-shuffle template-haskell text ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -121969,13 +123349,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "mainland-pretty_0_5_0_0" = callPackage - ({ mkDerivation, base, containers, srcloc, text }: + "mainland-pretty_0_6" = callPackage + ({ mkDerivation, base, containers, srcloc, text, transformers }: mkDerivation { pname = "mainland-pretty"; - version = "0.5.0.0"; - sha256 = "0666eb8e8005d42c00b49177eeb07518f578d2cb0f891aa7be6c44bd88428d43"; - libraryHaskellDepends = [ base containers srcloc text ]; + version = "0.6"; + sha256 = "6f5c5e86109de07404ccfa71407f8997e4e8bfaef2c8076b62d0846bede07031"; + libraryHaskellDepends = [ + base containers srcloc text transformers + ]; homepage = "https://github.com/mainland/mainland-pretty"; description = "Pretty printing designed for printing source code"; license = stdenv.lib.licenses.bsd3; @@ -122092,13 +123474,13 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "makefile_1_0_0_1" = callPackage + "makefile_1_0_0_2" = callPackage ({ mkDerivation, attoparsec, base, doctest, Glob, QuickCheck, text }: mkDerivation { pname = "makefile"; - version = "1.0.0.1"; - sha256 = "bf30dcdb767e3aa501657dc7bc5338fd015e29573f46b7a24e51e0493a1e5ff1"; + version = "1.0.0.2"; + sha256 = "cdfddb98b81632ea1d01611a4237b0650989d9e63a87abb542c5d920125ceca4"; libraryHaskellDepends = [ attoparsec base text ]; testHaskellDepends = [ attoparsec base doctest Glob QuickCheck text @@ -122499,30 +123881,6 @@ self: { }: mkDerivation { pname = "mandrill"; - version = "0.5.3.1"; - sha256 = "a559a166232461520f4fbb0637db9f922a82fdff819e9e35ee7b0941a7c0c315"; - libraryHaskellDepends = [ - aeson base base64-bytestring blaze-html bytestring containers - email-validate http-client http-client-tls http-types lens mtl - old-locale QuickCheck text time unordered-containers - ]; - testHaskellDepends = [ - aeson base bytestring QuickCheck raw-strings-qq tasty tasty-hunit - tasty-quickcheck text - ]; - description = "Library for interfacing with the Mandrill JSON API"; - license = stdenv.lib.licenses.mit; - }) {}; - - "mandrill_0_5_3_2" = callPackage - ({ mkDerivation, aeson, base, base64-bytestring, blaze-html - , bytestring, containers, email-validate, http-client - , http-client-tls, http-types, lens, mtl, old-locale, QuickCheck - , raw-strings-qq, tasty, tasty-hunit, tasty-quickcheck, text, time - , unordered-containers - }: - mkDerivation { - pname = "mandrill"; version = "0.5.3.2"; sha256 = "270d7df72da9c7d1d17bb3c5b115dac449b05a2931a6be41e55336b24e74f4cb"; libraryHaskellDepends = [ @@ -122536,7 +123894,6 @@ self: { ]; description = "Library for interfacing with the Mandrill JSON API"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "mandulia" = callPackage @@ -123044,8 +124401,10 @@ self: { }: mkDerivation { pname = "marvin-interpolate"; - version = "1.1"; - sha256 = "4ab8a4739390bf13b1612f223a671b440d959e8f70c9b2913e35cf1cb9e75656"; + version = "1.1.1"; + sha256 = "40c87c6430f54d7f8f6f57f97367395f0a4e2cc44576c187dddfded280450dfb"; + revision = "1"; + editedCabalFile = "ae99074b6dc220badb4caebe644a6fefcf7416e5d875b70ec6edd9d52cf09f94"; libraryHaskellDepends = [ base haskell-src-meta mtl parsec template-haskell text ]; @@ -123055,14 +124414,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "marvin-interpolate_1_1_1" = callPackage + "marvin-interpolate_1_1_2" = callPackage ({ mkDerivation, base, haskell-src-meta, hspec, mtl, parsec , template-haskell, text }: mkDerivation { pname = "marvin-interpolate"; - version = "1.1.1"; - sha256 = "40c87c6430f54d7f8f6f57f97367395f0a4e2cc44576c187dddfded280450dfb"; + version = "1.1.2"; + sha256 = "d640c3bc2f70e17d1fb23c914a3d19b11f72568fda5d5c52e52c1de2e940eccf"; libraryHaskellDepends = [ base haskell-src-meta mtl parsec template-haskell text ]; @@ -123321,6 +124680,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "matplotlib_0_4_5" = callPackage + ({ mkDerivation, ad, aeson, base, bytestring, containers, filepath + , process, random, raw-strings-qq, split, tasty + , tasty-expected-failure, tasty-golden, tasty-hunit, temporary + }: + mkDerivation { + pname = "matplotlib"; + version = "0.4.5"; + sha256 = "e57fed398b57c6fd7f1071ff19f72a88af84f7b13558efcb6bdd9a7824540b39"; + libraryHaskellDepends = [ + aeson base bytestring containers filepath process split temporary + ]; + testHaskellDepends = [ + ad base bytestring process random raw-strings-qq split tasty + tasty-expected-failure tasty-golden tasty-hunit temporary + ]; + homepage = "https://github.com/abarbu/matplotlib-haskell"; + description = "Bindings to Matplotlib; a Python plotting library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "matrices" = callPackage ({ mkDerivation, base, criterion, deepseq, primitive, tasty , tasty-hunit, tasty-quickcheck, vector @@ -123457,27 +124838,51 @@ self: { }) {}; "maxent-learner-hw" = callPackage - ({ mkDerivation, array, base, containers, csv, deepseq, file-embed - , mtl, optparse-applicative, parallel, random, text, vector + ({ mkDerivation, array, base, bytestring, containers, deepseq + , file-embed, mtl, optparse-applicative, parallel, random + , random-shuffle, readcsv, text, vector }: mkDerivation { pname = "maxent-learner-hw"; - version = "0.1.2"; - sha256 = "582b87a3f644043455906a2e48cfacc83a384d08bc5c97de7b2feb971efcb434"; + version = "0.2.1"; + sha256 = "84cceef3f6c66ed3065fc7b82093790e46defb0d92e80d87faa321d7201d1101"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - array base containers csv deepseq mtl random text vector + array base containers deepseq mtl parallel random readcsv text + vector ]; executableHaskellDepends = [ - array base containers deepseq file-embed mtl optparse-applicative - parallel random text + array base bytestring containers deepseq file-embed mtl + optparse-applicative parallel random random-shuffle text ]; homepage = "https://github.com/george-steel/maxent-learner"; description = "Hayes and Wilson's maxent learning algorithm for phonotactic grammars"; license = "GPL"; }) {}; + "maxent-learner-hw-gui" = callPackage + ({ mkDerivation, array, async, base, bytestring, cairo, Chart + , Chart-cairo, containers, deepseq, file-embed, frpnow, frpnow-gtk3 + , glib, gtk3, maxent-learner-hw, mtl, parallel, random + , raw-strings-qq, text, transformers, tuple + }: + mkDerivation { + pname = "maxent-learner-hw-gui"; + version = "0.2.1"; + sha256 = "e88815835e1390970416e60e0f42a982a7abb891a992ba569c67f8db956fc448"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + array async base bytestring cairo Chart Chart-cairo containers + deepseq file-embed frpnow frpnow-gtk3 glib gtk3 maxent-learner-hw + mtl parallel random raw-strings-qq text transformers tuple + ]; + homepage = "https://github.com/george-steel/maxent-learner"; + description = "GUI for maxent-learner-hw"; + license = "GPL"; + }) {}; + "maximal-cliques" = callPackage ({ mkDerivation, base, containers, vector }: mkDerivation { @@ -123592,6 +124997,51 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "mbox-utility_0_0_1" = callPackage + ({ mkDerivation, base, bytestring, hsemail, non-empty, old-time + , parsec, spreadsheet, utility-ht + }: + mkDerivation { + pname = "mbox-utility"; + version = "0.0.1"; + sha256 = "e5e009f83c95b20d85c4b39d233b2f32ee15eae08d54edbaa7928848ae15e9f8"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base bytestring hsemail non-empty old-time parsec spreadsheet + utility-ht + ]; + description = "List contents of an mbox file containing e-mails"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "mcl" = callPackage + ({ mkDerivation, base, binary, bytestring, Cabal, criterion + , deepseq, ghc-prim, gmpxx, groups, integer-gmp, mcl, openssl + , primitive, QuickCheck, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "mcl"; + version = "1.0.1"; + sha256 = "53351bcdb0628d2a1081118f132624c9b3926b41f0de19dc1896db7607ebc957"; + setupHaskellDepends = [ base Cabal ]; + libraryHaskellDepends = [ + base binary bytestring deepseq ghc-prim groups integer-gmp + primitive + ]; + librarySystemDepends = [ gmpxx mcl openssl ]; + testHaskellDepends = [ + base binary groups QuickCheck test-framework + test-framework-quickcheck2 + ]; + benchmarkHaskellDepends = [ + base binary bytestring criterion deepseq groups + ]; + description = "Bindings to mcl, a generic and fast pairing-based cryptography library"; + license = stdenv.lib.licenses.bsd3; + }) {inherit (pkgs) gmpxx; mcl = null; inherit (pkgs) openssl;}; + "mcm" = callPackage ({ mkDerivation, base, blaze-html, bytestring, containers , directory, filepath, hostname, MissingH, polyparse, process, text @@ -123856,8 +125306,8 @@ self: { }: mkDerivation { pname = "mediabus"; - version = "0.3.2.1"; - sha256 = "ac1fc31e78c001a3cf58b7acec59c08b83e063414650f5995e1a590cc728045d"; + version = "0.3.3.0"; + sha256 = "c23eba51ac61fe3d8dfd2c03c0f8a6ddb2e68936f513d5d14913a241fe9238ec"; libraryHaskellDepends = [ array async base bytestring cereal conduit conduit-combinators conduit-extra containers data-default deepseq lens lifted-async @@ -123917,8 +125367,8 @@ self: { }: mkDerivation { pname = "mediabus-fdk-aac"; - version = "0.3.2.1"; - sha256 = "197213a3645fda298d0a7ff9b123445df3464e70b9f2396f093b44119cfeba15"; + version = "0.4.0.0"; + sha256 = "c92ccd43789558fdcc299fe1da64354906b064daf7113e46982636d4b09f3d52"; libraryHaskellDepends = [ base bytestring conduit conduit-combinators containers deepseq inline-c lens mediabus monad-logger random resourcet spool tagged @@ -123930,7 +125380,7 @@ self: { ]; benchmarkHaskellDepends = [ base conduit criterion deepseq ghc-prim lens mediabus monad-logger - vector + time vector ]; homepage = "https://github.com/lindenbaum/mediabus-fdk-aac"; description = "Mediabus plugin for the Frauenhofer ISO-14496-3 AAC FDK"; @@ -124156,6 +125606,30 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; + "megaparsec_5_3_0" = callPackage + ({ mkDerivation, base, bytestring, containers, criterion, deepseq + , exceptions, hspec, hspec-expectations, mtl, QuickCheck + , scientific, text, transformers, weigh + }: + mkDerivation { + pname = "megaparsec"; + version = "5.3.0"; + sha256 = "3a9bbaae592120f94148777e4e08e23cb279128f3d43b1200b2d7a4a841bee52"; + libraryHaskellDepends = [ + base bytestring containers deepseq exceptions mtl QuickCheck + scientific text transformers + ]; + testHaskellDepends = [ + base bytestring containers exceptions hspec hspec-expectations mtl + QuickCheck scientific text transformers + ]; + benchmarkHaskellDepends = [ base criterion deepseq weigh ]; + homepage = "https://github.com/mrkkrp/megaparsec"; + description = "Monadic parser combinators"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "meldable-heap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -124174,8 +125648,8 @@ self: { }: mkDerivation { pname = "mellon-core"; - version = "0.7.0.3"; - sha256 = "02164fc2941eed7866e81b2d06b57b1ecb18151896e0bef795ad023b21773604"; + version = "0.7.1.0"; + sha256 = "4331b7b931538d84ee4e0b8cc41f3a59b7b9806feccb856fac87bd4a217d425a"; libraryHaskellDepends = [ async base mtl time transformers ]; testHaskellDepends = [ async base doctest hlint hspec mtl QuickCheck quickcheck-instances @@ -124191,8 +125665,8 @@ self: { ({ mkDerivation, base, hlint, hpio, mellon-core }: mkDerivation { pname = "mellon-gpio"; - version = "0.7.0.3"; - sha256 = "da0a2a616eb2834fe98fd4e456317d569b88de27b573d11f1e82b15294ea3222"; + version = "0.7.1.0"; + sha256 = "2aa1e83720b3a93ab48a6654c0f455bb5a28af2211b5a5867cc2f54341ac6d94"; libraryHaskellDepends = [ base hpio mellon-core ]; testHaskellDepends = [ base hlint ]; homepage = "https://github.com/dhess/mellon/"; @@ -124202,22 +125676,26 @@ self: { }) {}; "mellon-web" = callPackage - ({ mkDerivation, aeson, base, bytestring, exceptions, hlint, hpio - , hspec, hspec-wai, http-client, http-client-tls, http-types, lucid - , mellon-core, mellon-gpio, mtl, network, optparse-applicative - , servant, servant-client, servant-docs, servant-lucid - , servant-server, text, time, transformers, wai, wai-extra, warp + ({ mkDerivation, aeson, aeson-pretty, base, bytestring, doctest + , exceptions, hlint, hpio, hspec, hspec-wai, http-client + , http-client-tls, http-types, lens, lucid, mellon-core + , mellon-gpio, mtl, network, optparse-applicative, QuickCheck + , quickcheck-instances, servant, servant-client, servant-docs + , servant-lucid, servant-server, servant-swagger + , servant-swagger-ui, swagger2, text, time, transformers, wai + , wai-extra, warp }: mkDerivation { pname = "mellon-web"; - version = "0.7.0.3"; - sha256 = "77396dd6091f3c940bf1b15e1415698f432bb70d53557ea2988580fc54ae256b"; + version = "0.7.1.0"; + sha256 = "b06a69f34bfda3c5857d13b75fcc7d901523d387e893e803c3a53a5d243f8f84"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base bytestring http-client http-types lucid mellon-core - servant servant-client servant-docs servant-lucid servant-server - text time transformers wai warp + aeson aeson-pretty base bytestring http-client http-types lens + lucid mellon-core servant servant-client servant-docs servant-lucid + servant-server servant-swagger servant-swagger-ui swagger2 text + time transformers wai warp ]; executableHaskellDepends = [ base bytestring exceptions hpio http-client http-client-tls @@ -124225,10 +125703,11 @@ self: { servant-client time transformers warp ]; testHaskellDepends = [ - aeson base bytestring hlint hspec hspec-wai http-client http-types - lucid mellon-core network servant servant-client servant-docs - servant-lucid servant-server text time transformers wai wai-extra - warp + aeson aeson-pretty base bytestring doctest hlint hspec hspec-wai + http-client http-types lens lucid mellon-core network QuickCheck + quickcheck-instances servant servant-client servant-docs + servant-lucid servant-server servant-swagger servant-swagger-ui + swagger2 text time transformers wai wai-extra warp ]; homepage = "https://github.com/dhess/mellon/"; description = "A REST web service for Mellon controllers"; @@ -124497,8 +125976,8 @@ self: { }: mkDerivation { pname = "memory"; - version = "0.14.3"; - sha256 = "e729f2693c100e92000dece9643ab8daf28648e7bb587b3120ba3ef0df4eb879"; + version = "0.14.5"; + sha256 = "402012b2b8f6783537f7a24d27244b70a68defffa5dad3fcad89c379d15ba105"; libraryHaskellDepends = [ base bytestring deepseq foundation ghc-prim ]; @@ -124919,6 +126398,44 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "microformats2-parser_1_0_1_7" = callPackage + ({ mkDerivation, aeson, aeson-pretty, aeson-qq, attoparsec, base + , base-compat, blaze-html, blaze-markup, bytestring, containers + , data-default, either, errors, hspec + , hspec-expectations-pretty-diff, html-conduit, lens-aeson, mtl + , network, network-uri, options, pcre-heavy, raw-strings-qq, safe + , scotty, tagsoup, template-haskell, text, time, transformers + , unordered-containers, vector, wai-cli, wai-extra, xml-lens + , xss-sanitize + }: + mkDerivation { + pname = "microformats2-parser"; + version = "1.0.1.7"; + sha256 = "def0a462fcfaa344629ee05ced7a93593bad2749148873b4f4c63e3f0c6758f1"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson aeson-qq attoparsec base base-compat blaze-markup bytestring + containers data-default either errors html-conduit lens-aeson + network-uri pcre-heavy safe tagsoup text time transformers + unordered-containers vector xml-lens xss-sanitize + ]; + executableHaskellDepends = [ + aeson aeson-pretty base base-compat blaze-html blaze-markup + data-default network network-uri options scotty text wai-cli + wai-extra + ]; + testHaskellDepends = [ + aeson-qq base base-compat bytestring data-default hspec + hspec-expectations-pretty-diff html-conduit mtl network-uri + raw-strings-qq template-haskell text time xml-lens + ]; + homepage = "https://github.com/myfreeweb/microformats2-parser"; + description = "A Microformats 2 parser"; + license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "microformats2-types" = callPackage ({ mkDerivation, aeson, base, data-default-class, pandoc-types , setters, text, time @@ -124955,29 +126472,6 @@ self: { }: mkDerivation { pname = "microlens-aeson"; - version = "2.2.0"; - sha256 = "c25b8fefcd321f348c5948a0f65d30ecad4070e3f1f7720bacb022b57c6386d4"; - libraryHaskellDepends = [ - aeson attoparsec base bytestring microlens scientific text - unordered-containers vector - ]; - testHaskellDepends = [ - aeson base bytestring microlens tasty tasty-hunit text - unordered-containers vector - ]; - homepage = "http://github.com/fosskers/microlens-aeson/"; - description = "Law-abiding lenses for Aeson, using microlens"; - license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "microlens-aeson_2_2_0_1" = callPackage - ({ mkDerivation, aeson, attoparsec, base, bytestring, microlens - , scientific, tasty, tasty-hunit, text, unordered-containers - , vector - }: - mkDerivation { - pname = "microlens-aeson"; version = "2.2.0.1"; sha256 = "d0b1d08f91736a63daac283abf4c2a862f612fc4bd9dfaddc4017b104830f142"; libraryHaskellDepends = [ @@ -125202,6 +126696,7 @@ self: { homepage = "http://www.haskell.org/haskellwiki/MIDI"; description = "Convert between datatypes of the midi and the alsa packages"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {}; "midi-music-box" = callPackage @@ -125500,6 +126995,8 @@ self: { pname = "mime-mail"; version = "0.4.13.1"; sha256 = "9481671092739dab1d963c9db0dce56a0187390fb24c9badeeded6afb5895917"; + revision = "2"; + editedCabalFile = "3d56025f95b673cde3925c40f25fde19031ea445f434fba6555cdb0284a7dc9c"; libraryHaskellDepends = [ base base64-bytestring blaze-builder bytestring filepath process random text @@ -125681,8 +127178,8 @@ self: { }: mkDerivation { pname = "minimorph"; - version = "0.1.6.0"; - sha256 = "7faeea373e316aefc8bb8fcf7e3265263be94d8f985a7bb07ef67c7fe502ba9d"; + version = "0.1.6.1"; + sha256 = "94677b454b86a47d1b04ef1462873708976546bbb7a3bcc4f3ffe222d98bb844"; libraryHaskellDepends = [ base text ]; testHaskellDepends = [ base HUnit test-framework test-framework-hunit text @@ -125864,8 +127361,8 @@ self: { }: mkDerivation { pname = "miniutter"; - version = "0.4.4.2"; - sha256 = "3a08fc860e92aa22e83b07a0aa136530f60e675d24ef8e75009c676c2a4320db"; + version = "0.4.6.0"; + sha256 = "bde66af62bb1f9d4649bc9ddaf6b82f70ba5078591d6cd7462effb650c876a24"; libraryHaskellDepends = [ base binary containers ghc-prim minimorph text ]; @@ -126601,6 +128098,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "monad-batcher" = callPackage + ({ mkDerivation, base, exceptions }: + mkDerivation { + pname = "monad-batcher"; + version = "0.0.0.0"; + sha256 = "997c3a4221d27a70862837b9090161cbd9f59771e386016d28f9177655f25e7e"; + libraryHaskellDepends = [ base exceptions ]; + homepage = "https://github.com/basvandijk/monad-batcher"; + description = "An applicative monad that batches commands for later more efficient execution"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "monad-bool" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -126700,6 +128209,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "monad-control-aligned" = callPackage + ({ mkDerivation, base, stm, transformers, transformers-base + , transformers-compat + }: + mkDerivation { + pname = "monad-control-aligned"; + version = "0.0.1"; + sha256 = "ddb75107f0896931a83066d2ad85745c0bf4e0396046a3d5c17f35809a114287"; + libraryHaskellDepends = [ + base stm transformers transformers-base transformers-compat + ]; + homepage = "https://github.com/athanclark/monad-control#readme"; + description = "Just like monad-control, except less efficient, and the monadic state terms are all * -> *"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "monad-coroutine" = callPackage ({ mkDerivation, base, monad-parallel, transformers , transformers-compat @@ -126919,8 +128444,30 @@ self: { }: mkDerivation { pname = "monad-logger"; - version = "0.3.22"; - sha256 = "997152368c9200cff7547cc2037ed4f2b34e6e56de97d1aaac6b5a888a9b01e6"; + version = "0.3.23"; + sha256 = "02c761293c3f764d94e3ea8a193c28dc1f5da73cd79857a7a510fc8188508962"; + libraryHaskellDepends = [ + base blaze-builder bytestring conduit conduit-extra exceptions + fast-logger lifted-base monad-control monad-loops mtl resourcet stm + stm-chans template-haskell text transformers transformers-base + transformers-compat + ]; + homepage = "https://github.com/kazu-yamamoto/logger"; + description = "A class of monads which can log messages"; + license = stdenv.lib.licenses.mit; + }) {}; + + "monad-logger_0_3_24" = callPackage + ({ mkDerivation, base, blaze-builder, bytestring, conduit + , conduit-extra, exceptions, fast-logger, lifted-base + , monad-control, monad-loops, mtl, resourcet, stm, stm-chans + , template-haskell, text, transformers, transformers-base + , transformers-compat + }: + mkDerivation { + pname = "monad-logger"; + version = "0.3.24"; + sha256 = "05e579193068769d641cbf6bf6475682497897e64640b3936f6eda66cb36e8e4"; libraryHaskellDepends = [ base blaze-builder bytestring conduit conduit-extra exceptions fast-logger lifted-base monad-control monad-loops mtl resourcet stm @@ -126930,6 +128477,7 @@ self: { homepage = "https://github.com/kazu-yamamoto/logger"; description = "A class of monads which can log messages"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "monad-logger-json" = callPackage @@ -126983,6 +128531,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "monad-logger-syslog_0_1_4_0" = callPackage + ({ mkDerivation, base, bytestring, fast-logger, hsyslog + , monad-logger, text, transformers + }: + mkDerivation { + pname = "monad-logger-syslog"; + version = "0.1.4.0"; + sha256 = "052c3e13e235e7fb31caecc117e3ab4629e85bbfd3b35ec03f74d732acbc9ccb"; + libraryHaskellDepends = [ + base bytestring fast-logger hsyslog monad-logger text transformers + ]; + homepage = "https://github.com/fpco/monad-logger-syslog"; + description = "syslog output for monad-logger"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "monad-loops" = callPackage ({ mkDerivation, base, tasty, tasty-hunit }: mkDerivation { @@ -127214,16 +128779,16 @@ self: { }) {}; "monad-persist" = callPackage - ({ mkDerivation, base, hspec, monad-control, monad-logger, mtl - , persistent, persistent-sqlite, persistent-template, text - , transformers-base + ({ mkDerivation, base, exceptions, hspec, monad-control + , monad-logger, mtl, persistent, persistent-sqlite + , persistent-template, text, transformers-base }: mkDerivation { pname = "monad-persist"; - version = "0.0.1.0"; - sha256 = "389c06f837678593b4cd14348bb0a8774bd6da87be0639ebadc3aca6b830f8c9"; + version = "0.0.1.2"; + sha256 = "8dadf91d7ad94b22b36faf946215bb1a691bd24c5f2aa69fee1288a08475dbcc"; libraryHaskellDepends = [ - base monad-control monad-logger mtl persistent text + base exceptions monad-control monad-logger mtl persistent text transformers-base ]; testHaskellDepends = [ @@ -128069,6 +129634,8 @@ self: { pname = "monoid-extras"; version = "0.4.2"; sha256 = "13ff4e055c9656a3e599567cbc4a46ef8617c05534de46909a4239696e34281f"; + revision = "1"; + editedCabalFile = "3eb78f74ef1e80bca459e1cf187ab824486002edd0f699016d193c3aa2d8b9da"; libraryHaskellDepends = [ base groups semigroupoids semigroups ]; benchmarkHaskellDepends = [ base criterion ]; description = "Various extra monoid-related definitions and utilities"; @@ -128490,6 +130057,19 @@ self: { license = "LGPL"; }) {}; + "moving-averages" = callPackage + ({ mkDerivation, base, hspec }: + mkDerivation { + pname = "moving-averages"; + version = "0.2.0.0"; + sha256 = "368915f86b19a3328ebd14adb2a0822670b5e3aa3dd4a6c07543dd602ae7798b"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base hspec ]; + homepage = "https://github.com/joshuaclayton/moving-averages#readme"; + description = "This is a library for calculating moving averages on lists of numbers"; + license = stdenv.lib.licenses.mit; + }) {}; + "mp" = callPackage ({ mkDerivation, base, binary, bytestring, ConfigFile, daemons , directory, filepath, glib, gstreamer, hgettext, MissingH, mtl @@ -128549,6 +130129,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "mpg123-bindings" = callPackage + ({ mkDerivation, base, mpg123 }: + mkDerivation { + pname = "mpg123-bindings"; + version = "0.1.0.0"; + sha256 = "17558cb14a5beb08fa05288607bac7572b1d9fedb100f9de15288f2d01fad2d1"; + libraryHaskellDepends = [ base ]; + librarySystemDepends = [ mpg123 ]; + homepage = "https://github.com/pakanek/mpg123-haskell-binding"; + description = "Mpg132 bindings"; + license = stdenv.lib.licenses.bsd3; + }) {inherit (pkgs) mpg123;}; + "mpppc" = callPackage ({ mkDerivation, ansi-terminal, base, bytestring, split, text }: mkDerivation { @@ -130080,6 +131673,37 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "mustache_2_1_4" = callPackage + ({ mkDerivation, aeson, base, base-unicode-symbols, bytestring + , cmdargs, containers, directory, either, filepath, hspec, lens + , mtl, parsec, process, scientific, tar, template-haskell + , temporary, text, th-lift, unordered-containers, vector, wreq + , yaml, zlib + }: + mkDerivation { + pname = "mustache"; + version = "2.1.4"; + sha256 = "1c574cb80701a0acf91d65d8921f26cdc3228b747b7fb351a16da74d10f05cdb"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring containers directory either filepath mtl + parsec scientific template-haskell text th-lift + unordered-containers vector + ]; + executableHaskellDepends = [ + aeson base bytestring cmdargs filepath text yaml + ]; + testHaskellDepends = [ + aeson base base-unicode-symbols bytestring directory filepath hspec + lens process tar temporary text unordered-containers wreq yaml zlib + ]; + homepage = "https://github.com/JustusAdam/mustache"; + description = "A mustache template parser library"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "mustache-haskell" = callPackage ({ mkDerivation, aeson, base, bytestring, directory , optparse-applicative, parsec, pretty-show, scientific, text @@ -130256,12 +131880,14 @@ self: { }) {}; "mwc-random" = callPackage - ({ mkDerivation, base, primitive, time, vector }: + ({ mkDerivation, base, math-functions, primitive, time, vector }: mkDerivation { pname = "mwc-random"; - version = "0.13.5.0"; - sha256 = "28dd2d95d088438ab15e9dee45ddc500b6c4700a87539c70a48b1b7b4c8d1ca9"; - libraryHaskellDepends = [ base primitive time vector ]; + version = "0.13.6.0"; + sha256 = "065f334fc13c057eb03ef0b6aa3665ff193609d9bfcad8068bdd260801f44716"; + libraryHaskellDepends = [ + base math-functions primitive time vector + ]; doCheck = false; homepage = "https://github.com/bos/mwc-random"; description = "Fast, high quality pseudo random number generation"; @@ -131003,6 +132629,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "naqsha" = callPackage + ({ mkDerivation, base, data-default, groups, hspec, HUnit + , QuickCheck, vector + }: + mkDerivation { + pname = "naqsha"; + version = "0.1.0.0"; + sha256 = "ae6ed25bf7a8d19defdd9f15c0e4d2ff16665518e7d2bd7620b2f367efdac886"; + libraryHaskellDepends = [ base data-default groups vector ]; + testHaskellDepends = [ base groups hspec HUnit QuickCheck ]; + homepage = "http://github.com/naqsha/naqsha.git"; + description = "A library for working with geospatial data types"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "narc" = callPackage ({ mkDerivation, base, HDBC, HUnit, mtl, QuickCheck, random }: mkDerivation { @@ -131028,13 +132669,13 @@ self: { }) {}; "nat-sized-numbers" = callPackage - ({ mkDerivation, base, doctest, QuickCheck, smallcheck }: + ({ mkDerivation, base, deepseq, doctest, hedgehog, QuickCheck }: mkDerivation { pname = "nat-sized-numbers"; - version = "0.2.0.0"; - sha256 = "b3c907665ff1107da9c0acb9404766f6ded98e3cfd51c2348ff7434eaa32e23c"; - libraryHaskellDepends = [ base ]; - testHaskellDepends = [ base doctest QuickCheck smallcheck ]; + version = "0.3.0.0"; + sha256 = "b4e6e798f2fa61d4a7836f6d2f7056de1336af2aff72daac21782fed207a6fc2"; + libraryHaskellDepends = [ base deepseq ]; + testHaskellDepends = [ base doctest hedgehog QuickCheck ]; homepage = "https://github.com/oisdk/nat-sized-numbers#readme"; description = "Variable-sized numbers from type-level nats"; license = stdenv.lib.licenses.mit; @@ -131768,8 +133409,8 @@ self: { pname = "netrc"; version = "0.2.0.0"; sha256 = "9a5e07efa44f4b715b110aa4f9687e2b75458fb7537a2f4f1a3582c9e2e82a86"; - revision = "2"; - editedCabalFile = "81e838434e1cae11b94edbcfb61fee89f847a32e5a745fe59de69e6af9207ac9"; + revision = "3"; + editedCabalFile = "92ec853dbc1ef103ad44b6b39c61a905cc9b60cf0514cdd44751c70f533e1ac8"; libraryHaskellDepends = [ base bytestring deepseq parsec ]; testHaskellDepends = [ base bytestring tasty tasty-golden tasty-quickcheck @@ -133477,6 +135118,7 @@ self: { homepage = "https://github.com/peddie/nlopt-haskell"; description = "Low-level bindings to the NLOPT optimization library"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) nlopt;}; "nlp-scores" = callPackage @@ -134098,8 +135740,8 @@ self: { }: mkDerivation { pname = "notzero"; - version = "0.0.10"; - sha256 = "17fdfc0152869243d6523f003316427be9c8e64fc4a6294e506d54e3ca22943c"; + version = "0.0.11"; + sha256 = "e7f8f6b4583914c0d0e95951290f7805f60fa7c85ea5bee03bd0db1fa673186b"; libraryHaskellDepends = [ base bifunctors lens mtl semigroupoids semigroups transformers ]; @@ -134554,8 +136196,8 @@ self: { }: mkDerivation { pname = "numhask"; - version = "0.0.3"; - sha256 = "edca61ca143227ce701d53d6b848c7340b66af4338cbbcfa33c201402e421871"; + version = "0.0.4"; + sha256 = "ae9d9b52c84fec8f8604595030eb9dc1be80479523384c3cf354e9953dead247"; libraryHaskellDepends = [ adjunctions base distributive protolude QuickCheck singletons vector @@ -134566,6 +136208,7 @@ self: { homepage = "https://github.com/tonyday567/numhask"; description = "A numeric prelude"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "numhask-range" = callPackage @@ -134588,6 +136231,7 @@ self: { homepage = "https://github.com/tonyday567/numhask-range"; description = "see readme.md"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "nums" = callPackage @@ -134661,24 +136305,24 @@ self: { "nvim-hs" = callPackage ({ mkDerivation, ansi-wl-pprint, base, bytestring, cereal , cereal-conduit, conduit, conduit-extra, containers, data-default - , directory, dyre, exceptions, filepath, foreign-store, hslogger - , hspec, hspec-discover, HUnit, lifted-base, messagepack - , monad-control, mtl, network, optparse-applicative, parsec + , deepseq, directory, dyre, exceptions, filepath, foreign-store + , hslogger, hspec, hspec-discover, HUnit, lifted-base, megaparsec + , messagepack, monad-control, mtl, network, optparse-applicative , process, QuickCheck, resourcet, setenv, stm, streaming-commons , template-haskell, text, time, time-locale-compat, transformers , transformers-base, utf8-string }: mkDerivation { pname = "nvim-hs"; - version = "0.1.0"; - sha256 = "69d20c6ea113d9a88e68256f7c4017886e88005fca32a3c0c2cba3749ea09bd0"; + version = "0.2.2"; + sha256 = "167db8781b3f9c51aec8bc3c69dff62bdb0abe4fdcc7ee1be31ec3ee2dfae8ea"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ ansi-wl-pprint base bytestring cereal cereal-conduit conduit - conduit-extra containers data-default directory dyre exceptions - filepath foreign-store hslogger lifted-base messagepack - monad-control mtl network optparse-applicative parsec process + conduit-extra containers data-default deepseq directory dyre + exceptions filepath foreign-store hslogger lifted-base megaparsec + messagepack monad-control mtl network optparse-applicative process resourcet setenv stm streaming-commons template-haskell text time time-locale-compat transformers transformers-base utf8-string ]; @@ -134687,7 +136331,7 @@ self: { ansi-wl-pprint base bytestring cereal cereal-conduit conduit conduit-extra containers data-default directory dyre exceptions filepath foreign-store hslogger hspec hspec-discover HUnit - lifted-base messagepack mtl network optparse-applicative parsec + lifted-base megaparsec messagepack mtl network optparse-applicative process QuickCheck resourcet setenv stm streaming-commons template-haskell text time time-locale-compat transformers transformers-base utf8-string @@ -135018,8 +136662,8 @@ self: { }: mkDerivation { pname = "octane"; - version = "0.18.2"; - sha256 = "4fcd5e5f2b01eee2e382bdf701617129500cce1d4302fa265d52c15edcfa34a0"; + version = "0.18.3"; + sha256 = "2555a69101e39813d2f9b4f2bcbbb0a70f40592be1ef6c4414f3a7bc4297f415"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -135035,15 +136679,15 @@ self: { hydraPlatforms = [ "x86_64-darwin" "x86_64-linux" ]; }) {}; - "octane_0_18_3" = callPackage + "octane_0_19_0" = callPackage ({ mkDerivation, aeson, base, bimap, binary, bytestring, containers , data-default-class, file-embed, http-client, http-client-tls , overloaded-records, rattletrap, text }: mkDerivation { pname = "octane"; - version = "0.18.3"; - sha256 = "2555a69101e39813d2f9b4f2bcbbb0a70f40592be1ef6c4414f3a7bc4297f415"; + version = "0.19.0"; + sha256 = "a1f89f7e62662fa88db6dea71b30b7819cec04c7beb1180cf64632258f47bfe1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -135382,6 +137026,8 @@ self: { pname = "ombra"; version = "0.3.0.0"; sha256 = "99516f07fdc85967a562668f136a2899fda28ea6fe3be27e09bc06a2aca654ad"; + revision = "1"; + editedCabalFile = "4587fcff5f34debd811b2a45df47a1dd6fda7410c153aeb4ac074574df353703"; libraryHaskellDepends = [ base Boolean gl hashable hashtables transformers unordered-containers vector-space @@ -135544,6 +137190,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "one-liner_0_9" = callPackage + ({ mkDerivation, base, bifunctors, contravariant, ghc-prim, HUnit + , profunctors, tagged, transformers + }: + mkDerivation { + pname = "one-liner"; + version = "0.9"; + sha256 = "06739f18d5adebcf88843ebdeda91eba8c8f5146563097f5a5a3a2cf892c49b7"; + libraryHaskellDepends = [ + base bifunctors contravariant ghc-prim profunctors tagged + transformers + ]; + testHaskellDepends = [ base contravariant HUnit ]; + homepage = "https://github.com/sjoerdvisscher/one-liner"; + description = "Constraint-based generics"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "one-time-password" = callPackage ({ mkDerivation, base, bytestring, cereal, cryptonite, memory , tasty, tasty-hunit, time @@ -136204,6 +137869,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "openssl-streams_1_2_1_1" = callPackage + ({ mkDerivation, base, bytestring, HsOpenSSL, HUnit, io-streams + , network, test-framework, test-framework-hunit + }: + mkDerivation { + pname = "openssl-streams"; + version = "1.2.1.1"; + sha256 = "df4fc4d6700d4c63f8829ceab8226a9894a8e04d83932e0c8540ce6a0173d6aa"; + libraryHaskellDepends = [ + base bytestring HsOpenSSL io-streams network + ]; + testHaskellDepends = [ + base bytestring HsOpenSSL HUnit io-streams network test-framework + test-framework-hunit + ]; + description = "OpenSSL network support for io-streams"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "opentheory" = callPackage ({ mkDerivation, base, opentheory-primitive, QuickCheck }: mkDerivation { @@ -136724,24 +138409,6 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "optparse-applicative_0_13_1_0" = callPackage - ({ mkDerivation, ansi-wl-pprint, base, process, QuickCheck - , transformers, transformers-compat - }: - mkDerivation { - pname = "optparse-applicative"; - version = "0.13.1.0"; - sha256 = "f1fcf9d7e78ddf14083a07d8fe1aa65d75c5102e0d44df981585bce54c5c2a2b"; - libraryHaskellDepends = [ - ansi-wl-pprint base process transformers transformers-compat - ]; - testHaskellDepends = [ base QuickCheck ]; - homepage = "https://github.com/pcapriotti/optparse-applicative"; - description = "Utilities and combinators for parsing command line options"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - "optparse-applicative" = callPackage ({ mkDerivation, ansi-wl-pprint, base, process, QuickCheck , transformers, transformers-compat @@ -136805,6 +138472,23 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "optparse-generic_1_2_0" = callPackage + ({ mkDerivation, base, bytestring, optparse-applicative, semigroups + , system-filepath, text, time, transformers, void + }: + mkDerivation { + pname = "optparse-generic"; + version = "1.2.0"; + sha256 = "879295b1aa56f63079b7a776c132e4047d088d21a0120f5dd1d4429619cf1bfe"; + libraryHaskellDepends = [ + base bytestring optparse-applicative semigroups system-filepath + text time transformers void + ]; + description = "Auto-generate a command-line parser for your datatype"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "optparse-helper" = callPackage ({ mkDerivation, base, optparse-applicative }: mkDerivation { @@ -137558,19 +139242,17 @@ self: { "packunused" = callPackage ({ mkDerivation, base, Cabal, directory, filepath, haskell-src-exts - , optparse-applicative, split + , optparse-applicative, process, split }: mkDerivation { pname = "packunused"; - version = "0.1.1.4"; - sha256 = "c86ff007f3f1504c20f0fc86c8d277a1e424a16768debb19ffce767f30470baa"; - revision = "1"; - editedCabalFile = "5ddb122ff2a1ac4e79226f31b4d8f7dab67bb5501d0e715d84dbfe36c845b772"; + version = "0.1.2"; + sha256 = "d3d9ff568bf6e50185bb716cca8a06eae79ecc6bbd2a964982992ca96bbb5446"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ base Cabal directory filepath haskell-src-exts optparse-applicative - split + process split ]; homepage = "https://github.com/hvr/packunused"; description = "Tool for detecting redundant Cabal package dependencies"; @@ -137753,6 +139435,7 @@ self: { libraryToolDepends = [ c2hs ]; description = "Haskell binding for C PAM API"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) pam;}; "panda" = callPackage @@ -137793,8 +139476,8 @@ self: { pname = "pandoc"; version = "1.19.2.1"; sha256 = "08692f3d77bf95bb9ba3407f7af26de7c23134e7efcdafad0bdaf9050e2c7801"; - revision = "2"; - editedCabalFile = "5dc6d0e5637a60e185b91d0540ba0c729ff9413bb852abd94fe9ac19fa3f1227"; + revision = "3"; + editedCabalFile = "0a776d292fd0ab23b9835416f8985a475550319b1d65e6bbe99265b914cefa52"; configureFlags = [ "-fhttps" "-f-trypandoc" ]; isLibrary = true; isExecutable = true; @@ -137838,6 +139521,8 @@ self: { pname = "pandoc-citeproc"; version = "0.10.4.1"; sha256 = "6e6b0a89a831f9bfaa33dc0f3dff1792ee1626a5e66e1bd34da9447cd3c7de51"; + revision = "1"; + editedCabalFile = "12e0b66b4e3b9e74142163326b50254ed66adbeaae550d08e20cd1cb63db9b01"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -137910,8 +139595,8 @@ self: { ({ mkDerivation, base, csv, pandoc, pandoc-types, text }: mkDerivation { pname = "pandoc-csv2table"; - version = "1.0.4"; - sha256 = "c1f14975239d5b26faba78f3db6c84573d4db99ab021560c184755259ca61b82"; + version = "1.0.5"; + sha256 = "814e8fa7cf083995aedce38c04cbeabac479adea3eadd011f897dc4b0313c988"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base csv pandoc pandoc-types text ]; @@ -138083,8 +139768,8 @@ self: { pname = "pandoc-types"; version = "1.17.0.5"; sha256 = "c8825588b587ff5ed0c105156a11a43f3b752279997231cfc13102809bbc51b3"; - revision = "2"; - editedCabalFile = "7a12dacfadc507c1e7992acdceeba8a1a12ca682724dd1cc4faefaf985b8c2ea"; + revision = "3"; + editedCabalFile = "deb49394bcb5219196ae12342ca2baeeacf50d034767e1dcd25bbd00dc55e643"; libraryHaskellDepends = [ aeson base bytestring containers deepseq ghc-prim QuickCheck syb ]; @@ -139357,6 +141042,21 @@ self: { pname = "partial-isomorphisms"; version = "0.2.2"; sha256 = "f6ee216db7be14d497c428562c83423a5d2579c86b70b822996bde28c196569c"; + revision = "1"; + editedCabalFile = "dc27254b2fb36077e39a78632a392c4dc5beca2b9dcc536fea0ee2532a453263"; + libraryHaskellDepends = [ base template-haskell ]; + homepage = "http://www.informatik.uni-marburg.de/~rendel/unparse"; + description = "Partial isomorphisms"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "partial-isomorphisms_0_2_2_1" = callPackage + ({ mkDerivation, base, template-haskell }: + mkDerivation { + pname = "partial-isomorphisms"; + version = "0.2.2.1"; + sha256 = "4c551fa69119e87de1ba0ec7b854f6ed13fb2fe2768db4afff2f8468f0f4a164"; libraryHaskellDepends = [ base template-haskell ]; homepage = "http://www.informatik.uni-marburg.de/~rendel/unparse"; description = "Partial isomorphisms"; @@ -139517,8 +141217,8 @@ self: { }: mkDerivation { pname = "patat"; - version = "0.5.0.0"; - sha256 = "74fe32c9b9dec0b57895f92037027093f6928b482bd147534f87fcb4c24cec3c"; + version = "0.5.1.2"; + sha256 = "79240ce4514b8b947e596b0ad2db31c3a1b3656185505c43914b0940277aa57b"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -139545,21 +141245,25 @@ self: { "patch-image" = callPackage ({ mkDerivation, accelerate, accelerate-arithmetic, accelerate-cuda , accelerate-cufft, accelerate-fourier, accelerate-io - , accelerate-utility, array, base, Cabal, carray, containers - , enumset, fft, filepath, gnuplot, hmatrix, JuicyPixels, knead - , llvm-extra, llvm-tf, pqueue, tfp, utility-ht, vector + , accelerate-utility, array, base, bytestring, Cabal, carray + , cassava, containers, enumset, explicit-exception, fft, filepath + , gnuplot, hmatrix, JuicyPixels, knead, llvm-extra, llvm-tf + , non-empty, pqueue, storable-tuple, tfp, unordered-containers + , utility-ht, vector }: mkDerivation { pname = "patch-image"; - version = "0.2"; - sha256 = "23517289417a46873182c45091da803df80942758b38dca89303c0d066546450"; + version = "0.3.1"; + sha256 = "27c817b68d0d949b6ca8904e6193315ba263e961cf5794a1abbc909007daf1d0"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ accelerate accelerate-arithmetic accelerate-cuda accelerate-cufft accelerate-fourier accelerate-io accelerate-utility array base - Cabal carray containers enumset fft filepath gnuplot hmatrix - JuicyPixels knead llvm-extra llvm-tf pqueue tfp utility-ht vector + bytestring Cabal carray cassava containers enumset + explicit-exception fft filepath gnuplot hmatrix JuicyPixels knead + llvm-extra llvm-tf non-empty pqueue storable-tuple tfp + unordered-containers utility-ht vector ]; homepage = "http://hub.darcs.net/thielema/patch-image/"; description = "Compose a big image from overlapping parts"; @@ -139622,6 +141326,8 @@ self: { pname = "path-io"; version = "1.2.2"; sha256 = "72255f9d014285c87dd4c537f445a5448b2b64e81c4ee4759464b4b0e401fe46"; + revision = "1"; + editedCabalFile = "d570fb571051195c6783f148431f7bfddb496c4bf71968f9a0580ccd2f65e3e4"; libraryHaskellDepends = [ base containers directory exceptions filepath path temporary time transformers unix-compat @@ -140002,6 +141708,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pcgen" = callPackage + ({ mkDerivation, base, criterion, deepseq, hspec, QuickCheck + , random + }: + mkDerivation { + pname = "pcgen"; + version = "1.0.0"; + sha256 = "ead380c5661588363e7aa6a01f8f348c174cccb375ef2fb34c14b47edc2a00da"; + libraryHaskellDepends = [ base random ]; + testHaskellDepends = [ base hspec QuickCheck random ]; + benchmarkHaskellDepends = [ base criterion deepseq random ]; + homepage = "https://github.com/Lokathor/pcgen-hs"; + description = "A fast, pseudorandom number generator"; + license = stdenv.lib.licenses.asl20; + }) {}; + "pcre-heavy" = callPackage ({ mkDerivation, base, base-compat, bytestring, doctest, Glob , pcre-light, semigroups, string-conversions, template-haskell @@ -140551,20 +142273,21 @@ self: { }) {}; "peregrin" = callPackage - ({ mkDerivation, base, hspec, pg-harness-client, postgresql-simple - , resource-pool, text, transformers + ({ mkDerivation, base, bytestring, hspec, pg-harness-client + , postgresql-simple, resource-pool, text, transformers }: mkDerivation { pname = "peregrin"; - version = "0.1.0"; - sha256 = "9cd335665b1d4e453d88c3dbe3ffb238ebca89890ac7998bc80f6968be2e1ac1"; - libraryHaskellDepends = [ base postgresql-simple text ]; + version = "0.2.0"; + sha256 = "635af1f11b6518980e1aa6beff32cf98e9a14ff035f8bc47b716e95b994d6998"; + libraryHaskellDepends = [ base bytestring postgresql-simple text ]; testHaskellDepends = [ base hspec pg-harness-client postgresql-simple resource-pool text transformers ]; description = "Database migration support for use in other libraries"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "perfecthash" = callPackage @@ -141092,8 +142815,8 @@ self: { ({ mkDerivation, base, time, yesod }: mkDerivation { pname = "persistent-ratelimit"; - version = "0.2.0.0"; - sha256 = "e3b14ed8c78999ebe797e84cac75bc66ed7bd264b9ccef92279193be31ed114e"; + version = "0.3.0.0"; + sha256 = "5544ff263f7d6398bbf2c05d175a2464fc1661a3f4430c0a8b52528138e50716"; libraryHaskellDepends = [ base time yesod ]; homepage = "https://github.com/jprider63/persistent-ratelimit"; description = "A library for rate limiting activities with a persistent backend"; @@ -141658,8 +143381,8 @@ self: { }: mkDerivation { pname = "phoityne-vscode"; - version = "0.0.13.0"; - sha256 = "72d782287fccefaab02a524a8fc64affbee3692b56889dd07ed64427a1c453f7"; + version = "0.0.14.0"; + sha256 = "e5b902f9317ac8477ee942bbc77204c02b8c0b6b4698a53618424d1f12045fb3"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -141867,17 +143590,17 @@ self: { }) {}; "pi-lcd" = callPackage - ({ mkDerivation, base, bytestring, clock, text, unix + ({ mkDerivation, base, bytestring, clock, deepseq, text, unix , unordered-containers }: mkDerivation { pname = "pi-lcd"; - version = "0.1.0.0"; - sha256 = "afd0dc56b2c3254420b7b3590bca606be9a7d6881cacfab04e5fb2dbe31303d9"; + version = "0.1.1.0"; + sha256 = "760360a9548437eae87d6c537fcbb03b4fee3129776bf32ce21c25a3fefc4004"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base bytestring clock text unix unordered-containers + base bytestring clock deepseq text unix unordered-containers ]; executableHaskellDepends = [ base text ]; homepage = "https://github.com/ppelleti/pi-lcd"; @@ -142133,6 +143856,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "pinch_0_3_1_0" = callPackage + ({ mkDerivation, array, base, bytestring, containers, deepseq + , ghc-prim, hashable, hspec, hspec-discover, QuickCheck, text + , unordered-containers, vector + }: + mkDerivation { + pname = "pinch"; + version = "0.3.1.0"; + sha256 = "6f8baa41a26fbe46b66a9b8b24886db7e7883e9cf175eb5690cdd043135d85bf"; + libraryHaskellDepends = [ + array base bytestring containers deepseq ghc-prim hashable text + unordered-containers vector + ]; + testHaskellDepends = [ + base bytestring containers hspec hspec-discover QuickCheck text + unordered-containers vector + ]; + homepage = "https://github.com/abhinav/pinch#readme"; + description = "An alternative implementation of Thrift for Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "pinchot" = callPackage ({ mkDerivation, base, containers, Earley, lens, pretty-show , semigroups, template-haskell, transformers @@ -142180,41 +143926,17 @@ self: { license = stdenv.lib.licenses.bsd2; }) {}; - "pipes_4_2_0" = callPackage - ({ mkDerivation, base, criterion, mmorph, mtl, optparse-applicative - , QuickCheck, test-framework, test-framework-quickcheck2 - , transformers - }: - mkDerivation { - pname = "pipes"; - version = "4.2.0"; - sha256 = "1e407197e94c3c8642fd2c7b4f8e5a3e537844dff2780c396464a47ae0ec0124"; - revision = "1"; - editedCabalFile = "1ce0aac0a280be337215bcf2a8b73b081a948bfb93e24045a7e3a3c3e6adfad0"; - libraryHaskellDepends = [ base mmorph mtl transformers ]; - testHaskellDepends = [ - base mtl QuickCheck test-framework test-framework-quickcheck2 - transformers - ]; - benchmarkHaskellDepends = [ - base criterion mtl optparse-applicative transformers - ]; - description = "Compositional pipelines"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - "pipes" = callPackage ({ mkDerivation, base, criterion, exceptions, mmorph, mtl , optparse-applicative, QuickCheck, test-framework - , test-framework-quickcheck2, transformers + , test-framework-quickcheck2, transformers, void }: mkDerivation { pname = "pipes"; - version = "4.3.2"; - sha256 = "7957bb290db7f1dfad0581f363ab97fcd58f7c0b916e1114464cb9a398b8334a"; + version = "4.3.3"; + sha256 = "748d728bba3b00fb908c8e4f338877a33559738f791b94eae6ac1a10b9a2f669"; libraryHaskellDepends = [ - base exceptions mmorph mtl transformers + base exceptions mmorph mtl transformers void ]; testHaskellDepends = [ base mtl QuickCheck test-framework test-framework-quickcheck2 @@ -142836,8 +144558,8 @@ self: { }: mkDerivation { pname = "pipes-lzma"; - version = "0.1.1.0"; - sha256 = "8d5af5806d20ac9b8e0b416a0c36cb6b8039ac55c0cb2831252a8f6c75da01f2"; + version = "0.1.1.1"; + sha256 = "24a78698af0437d6b7061141d50cd9ac83b98a81c1d42b5f32a214e87297cd26"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base bytestring lzma pipes ]; @@ -143658,6 +145380,7 @@ self: { executableHaskellDepends = [ base optparse-applicative socketed ]; description = "plot data from stdin through socketed"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "plot" = callPackage @@ -144480,6 +146203,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "polyvariadic" = callPackage + ({ mkDerivation, base, containers }: + mkDerivation { + pname = "polyvariadic"; + version = "0.3.0.0"; + sha256 = "bf10823ad155ba1c7deaa2076a507cab4c37a78474d544a57bc6ce670ad6068f"; + libraryHaskellDepends = [ base containers ]; + homepage = "https://github.com/fgaz/polyvariadic"; + description = "Creation and application of polyvariadic functions"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "pomodoro" = callPackage ({ mkDerivation, base, bytestring, cereal, directory, filepath , heredoc, libnotify, network, process, time, unix, wx, wxcore @@ -144538,14 +146273,15 @@ self: { "pong-server" = callPackage ({ mkDerivation, base, bytestring, classy-prelude, exceptions - , hspec, http-types, network, QuickCheck + , hspec, http-types, monad-control, network, QuickCheck }: mkDerivation { pname = "pong-server"; - version = "0.0.3.0"; - sha256 = "dd84310b20b09d2667dcc1af7b6ecab2a47f19986395049eeebb7ddc86b8c326"; + version = "0.0.4.4"; + sha256 = "a47fd49e487ac994489ac27322a0d03e028d605bd2f23b56314ba15809c1cde2"; libraryHaskellDepends = [ - base bytestring classy-prelude exceptions http-types network + base bytestring classy-prelude exceptions http-types monad-control + network ]; testHaskellDepends = [ base hspec network QuickCheck ]; homepage = "http://github.com/RobertFischer/pong-server#readme"; @@ -144945,6 +146681,7 @@ self: { homepage = "https://bitbucket.org/merijnv/posix-pty"; description = "Pseudo terminal interaction with subprocesses"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {util = null;}; "posix-realtime" = callPackage @@ -145213,8 +146950,8 @@ self: { }: mkDerivation { pname = "postgresql-query"; - version = "3.1.0"; - sha256 = "32fbc4c4dc73c6338bfb58c61a2f823b6b6b0113b87735748a53a3e38ca7ba87"; + version = "3.2.0"; + sha256 = "7f5f41e889414dc6e4f5f403ab86381ff6c345c9bc01686901365ab2423cea09"; libraryHaskellDepends = [ aeson attoparsec base blaze-builder bytestring containers data-default either exceptions file-embed haskell-src-meta hreader @@ -145288,8 +147025,8 @@ self: { }: mkDerivation { pname = "postgresql-simple-bind"; - version = "0.4.0"; - sha256 = "a313032f8a8a0c6b97094d396afcd81a04a2d017699a08b5e2cbc2b8309cf284"; + version = "0.4.1"; + sha256 = "8a076f24bc73989df7b0388457d2195c6456cf7ed1a38c3ce774c746208afce9"; libraryHaskellDepends = [ attoparsec base bytestring data-default exceptions heredoc postgresql-simple template-haskell text time @@ -145466,35 +147203,38 @@ self: { homepage = "https://gitlab.com/theunixman/postgresql-typed-lifted"; description = "postgresql-typed operations lifted to any instance of MonadBase or MonadBaseControl"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "postgrest" = callPackage ({ mkDerivation, aeson, aeson-qq, ansi-wl-pprint, async , auto-update, base, base64-bytestring, bytestring , case-insensitive, cassava, configurator, containers - , contravariant, either, hasql, hasql-pool, hasql-transaction - , heredoc, hjsonpointer, hjsonschema, hspec, hspec-wai - , hspec-wai-json, HTTP, http-types, insert-ordered-containers - , interpolatedstring-perl6, jwt, lens, lens-aeson, monad-control - , network-uri, optparse-applicative, parsec, process, protolude - , Ranged-sets, regex-tdfa, safe, scientific, swagger2, text, time - , transformers-base, unix, unordered-containers, vector, wai - , wai-cors, wai-extra, wai-middleware-static, warp + , contravariant, cookie, either, hasql, hasql-pool + , hasql-transaction, heredoc, hjsonpointer, hjsonschema, hspec + , hspec-wai, hspec-wai-json, HTTP, http-types + , insert-ordered-containers, interpolatedstring-perl6, jwt, lens + , lens-aeson, monad-control, network-uri, optparse-applicative + , parsec, process, protolude, Ranged-sets, regex-tdfa, safe + , scientific, swagger2, text, time, transformers-base, unix + , unordered-containers, vector, wai, wai-cors, wai-extra + , wai-middleware-static, warp }: mkDerivation { pname = "postgrest"; - version = "0.4.0.0"; - sha256 = "781c074cb47aa26d8d5de520113b23bad9be729057f87375f11a8abc2bb3489b"; + version = "0.4.1.0"; + sha256 = "1449a1632fbbf97f24b791b975acf4598c7936c890a599393016bd97562764bc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson ansi-wl-pprint base bytestring case-insensitive cassava - configurator containers contravariant either hasql hasql-pool - hasql-transaction heredoc HTTP http-types insert-ordered-containers - interpolatedstring-perl6 jwt lens lens-aeson network-uri - optparse-applicative parsec protolude Ranged-sets regex-tdfa safe - scientific swagger2 text time unordered-containers vector wai - wai-cors wai-extra wai-middleware-static + configurator containers contravariant cookie either hasql + hasql-pool hasql-transaction heredoc HTTP http-types + insert-ordered-containers interpolatedstring-perl6 jwt lens + lens-aeson network-uri optparse-applicative parsec protolude + Ranged-sets regex-tdfa safe scientific swagger2 text time + unordered-containers vector wai wai-cors wai-extra + wai-middleware-static ]; executableHaskellDepends = [ auto-update base base64-bytestring bytestring hasql hasql-pool @@ -145510,35 +147250,41 @@ self: { homepage = "https://github.com/begriffs/postgrest"; description = "REST API for any Postgres database"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "postgrest-ws" = callPackage - ({ mkDerivation, aeson, base, bytestring, hasql, hasql-pool - , http-types, jwt, postgresql-libpq, postgrest, string-conversions - , text, time, transformers, unix, unordered-containers, wai - , wai-websockets, warp, websockets + ({ mkDerivation, aeson, ansi-wl-pprint, auto-update, base + , base64-bytestring, bytestring, configurator, containers, either + , hasql, hasql-pool, heredoc, hspec, hspec-wai, hspec-wai-json + , http-types, jwt, lens, lens-aeson, optparse-applicative + , postgresql-libpq, protolude, stm, stm-containers, text, time + , transformers, unix, unordered-containers, wai, wai-app-static + , wai-extra, wai-websockets, warp, websockets }: mkDerivation { pname = "postgrest-ws"; - version = "0.1.0.1"; - sha256 = "50ce5a13c8b7fe1719e61630ae019b9eb3ca4a923a036585c98635f0df1e3dfb"; + version = "0.3.1.0"; + sha256 = "8216b0f87486335192bc7811dde9564527f03f8c24893af57e916f3b91c07881"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - aeson base bytestring hasql-pool http-types postgresql-libpq - postgrest string-conversions text time unordered-containers wai - wai-websockets websockets + aeson base bytestring either hasql hasql-pool http-types jwt lens + lens-aeson postgresql-libpq protolude stm stm-containers text time + unordered-containers wai wai-websockets websockets ]; executableHaskellDepends = [ - base hasql hasql-pool jwt postgresql-libpq postgrest - string-conversions transformers unix warp + ansi-wl-pprint auto-update base base64-bytestring bytestring + configurator hasql hasql-pool heredoc http-types jwt + optparse-applicative postgresql-libpq protolude text time + transformers unix wai wai-app-static wai-extra warp + ]; + testHaskellDepends = [ + aeson base containers hasql hasql-pool hspec hspec-wai + hspec-wai-json http-types protolude stm wai-extra ]; - testHaskellDepends = [ base ]; homepage = "https://github.com/diogob/postgrest-ws#readme"; description = "PostgREST extension to map LISTEN/NOTIFY messages to Websockets"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "postie" = callPackage @@ -145892,8 +147638,8 @@ self: { }: mkDerivation { pname = "preamble"; - version = "0.0.32"; - sha256 = "428d5bd2ad1e3b1564675bf18feea19d82a5b28a2c0623de5f00e49c3eeec04d"; + version = "0.0.35"; + sha256 = "2a1419c657ae92b9ed2120dbdbde519ef5ef944c6a1cc6a805b152e9b1731e9f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -146498,8 +148244,8 @@ self: { ({ mkDerivation, base, generics-sop, pretty-show }: mkDerivation { pname = "pretty-sop"; - version = "0.2.0.0"; - sha256 = "931e60782ff551f864b2548fcb39c2e05e502a4b2ef76108a6f66b672c88590f"; + version = "0.2.0.2"; + sha256 = "d64ff28d14360f782dc3ffaec16497015ef9ffc91b2c1cf234274cde9f2d3274"; libraryHaskellDepends = [ base generics-sop pretty-show ]; description = "A generic pretty-printer using generics-sop"; license = stdenv.lib.licenses.bsd3; @@ -146828,17 +148574,17 @@ self: { }) {}; "prizm" = callPackage - ({ mkDerivation, base, convertible, HUnit, mono-traversable - , QuickCheck, test-framework, test-framework-hunit - , test-framework-quickcheck2, text + ({ mkDerivation, base, convertible, HUnit, QuickCheck + , test-framework, test-framework-hunit, test-framework-quickcheck2 + , text }: mkDerivation { pname = "prizm"; - version = "2.0.1"; - sha256 = "2f35547b8041c51890cadfd072838140f8ed808491272e77e51b2e90097106ef"; - libraryHaskellDepends = [ base convertible mono-traversable text ]; + version = "3.0.0"; + sha256 = "9bbc4c8781cbc7df4822d7031eb9570e8caf0956979a061b84d89f3884d05283"; + libraryHaskellDepends = [ base convertible text ]; testHaskellDepends = [ - base convertible HUnit mono-traversable QuickCheck test-framework + base convertible HUnit QuickCheck test-framework test-framework-hunit test-framework-quickcheck2 ]; homepage = "https://github.com/ixmatus/prizm"; @@ -147561,8 +149307,8 @@ self: { }: mkDerivation { pname = "prometheus-client"; - version = "0.1.0.1"; - sha256 = "bdc0b7a6df25037dbc10d16960922ce8f3582d7eb79c5d60360e61da3220772f"; + version = "0.1.1"; + sha256 = "9f8c6e12feb1d4fc5ff37cc7d07ec7bee8a1d24a118be993b070528732324a4b"; libraryHaskellDepends = [ atomic-primops base bytestring containers mtl stm time transformers utf8-string @@ -147583,8 +149329,8 @@ self: { ({ mkDerivation, base, doctest, prometheus-client, utf8-string }: mkDerivation { pname = "prometheus-metrics-ghc"; - version = "0.1.0.1"; - sha256 = "17842db364e459d59e5f298345828843622b4e095b37b8ad7c556a2722854795"; + version = "0.1.1"; + sha256 = "9c30cf26956eb171ca7d2b353aacc8bf2c4bcc5dc069f200547436f290687ef2"; libraryHaskellDepends = [ base prometheus-client utf8-string ]; testHaskellDepends = [ base doctest prometheus-client ]; homepage = "https://github.com/fimad/prometheus-haskell"; @@ -148328,14 +150074,14 @@ self: { license = stdenv.lib.licenses.mit; }) {}; - "publicsuffix_0_20170416" = callPackage + "publicsuffix_0_20170508" = callPackage ({ mkDerivation, base, criterion, filepath, hspec, random , template-haskell }: mkDerivation { pname = "publicsuffix"; - version = "0.20170416"; - sha256 = "f05995b722e195dd33d996074cc05f51dd07165e8519c4e27215a59598411712"; + version = "0.20170508"; + sha256 = "646fa2a0e148e733bfe8285517155962f59dc2ce463c216ca6a042feebf46959"; libraryHaskellDepends = [ base filepath template-haskell ]; testHaskellDepends = [ base hspec ]; benchmarkHaskellDepends = [ base criterion random ]; @@ -148828,6 +150574,7 @@ self: { homepage = "http://www.purescript.org/"; description = "PureScript Programming Language Compiler"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "purescript-bridge" = callPackage @@ -148996,8 +150743,8 @@ self: { }: mkDerivation { pname = "pushbullet-types"; - version = "0.1.0.0"; - sha256 = "0b9ecf81378eb74d27102c2253b4ecef75032b25f40242fcb99c7fbbe99df4b4"; + version = "0.2.0.0"; + sha256 = "5aa2d58cd43122c10c45b93bf0b76251665a1b8aa9cf4c0b522abbdf11a1a7e4"; libraryHaskellDepends = [ aeson base http-api-data microlens microlens-th scientific text time unordered-containers @@ -150837,19 +152584,20 @@ self: { "rails-session" = callPackage ({ mkDerivation, base, base-compat, base64-bytestring, bytestring - , cryptonite, http-types, pbkdf, ruby-marshal, string-conv, tasty - , tasty-hspec, vector + , cryptonite, filepath, http-types, pbkdf, ruby-marshal + , string-conv, tasty, tasty-hspec, transformers, vector }: mkDerivation { pname = "rails-session"; - version = "0.1.0.0"; - sha256 = "e897b191410818f2cb2b85985e547b87b250727cf23dc2a7d9effd5c28fdc2da"; + version = "0.1.1.0"; + sha256 = "1d9bc6f466f41936d8611273194c62c5bffa43547730a92d019d9b309e1088f8"; libraryHaskellDepends = [ base base-compat base64-bytestring bytestring cryptonite http-types pbkdf ruby-marshal string-conv vector ]; testHaskellDepends = [ - base bytestring ruby-marshal tasty tasty-hspec vector + base bytestring filepath ruby-marshal tasty tasty-hspec + transformers vector ]; homepage = "http://github.com/iconnect/rails-session#readme"; description = "Decrypt Ruby on Rails sessions in Haskell"; @@ -150978,8 +152726,8 @@ self: { ({ mkDerivation, base, criterion, deepseq, hspec }: mkDerivation { pname = "ralist"; - version = "0.2.0.0"; - sha256 = "ab379b5d61661796a23448b7aaa7e5d6dc64aae4cb11835caa80d80d8f2df5b7"; + version = "0.2.1.0"; + sha256 = "83b0ade1ac024160e0698d06c452f0817442e028e46d4f68db02cc57d497d6a5"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec ]; benchmarkHaskellDepends = [ base criterion deepseq ]; @@ -151756,25 +153504,6 @@ self: { }: mkDerivation { pname = "ratel"; - version = "0.3.2"; - sha256 = "99b838c7d85208cd49fdf733d99ca29baafbb924f9db8a0d45ae88c15fc6ba73"; - libraryHaskellDepends = [ - aeson base bytestring case-insensitive containers http-client - http-client-tls http-types text uuid - ]; - testHaskellDepends = [ base tasty tasty-hspec ]; - homepage = "https://github.com/tfausak/ratel#readme"; - description = "Notify Honeybadger about exceptions"; - license = stdenv.lib.licenses.mit; - }) {}; - - "ratel_0_3_3" = callPackage - ({ mkDerivation, aeson, base, bytestring, case-insensitive - , containers, http-client, http-client-tls, http-types, tasty - , tasty-hspec, text, uuid - }: - mkDerivation { - pname = "ratel"; version = "0.3.3"; sha256 = "c3210d5a1b43fa792d6e26a98497fd11f3fd16e1e6d4f58d0b4c61b3bc0adee2"; libraryHaskellDepends = [ @@ -151785,7 +153514,6 @@ self: { homepage = "https://github.com/tfausak/ratel#readme"; description = "Notify Honeybadger about exceptions"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "ratel-wai" = callPackage @@ -151854,16 +153582,15 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "rattletrap_2_2_1" = callPackage + "rattletrap_2_2_4" = callPackage ({ mkDerivation, aeson, aeson-casing, base, bimap, binary , binary-bits, bytestring, containers, data-binary-ieee754 - , filepath, tasty, tasty-hspec, template-haskell, temporary, text - , vector + , filepath, hspec, template-haskell, temporary, text, vector }: mkDerivation { pname = "rattletrap"; - version = "2.2.1"; - sha256 = "aa2e970e4fa7d4d5c542aa1b89f2f8e814742a2d9087edbd19e0d527f41f219e"; + version = "2.2.4"; + sha256 = "31fccbfed275110c6cd6e1800e04c1c84364608aa7ab7f662925103ddd28a3a7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -151871,9 +153598,7 @@ self: { containers data-binary-ieee754 template-haskell text vector ]; executableHaskellDepends = [ base ]; - testHaskellDepends = [ - base bytestring filepath tasty tasty-hspec temporary - ]; + testHaskellDepends = [ base bytestring filepath hspec temporary ]; homepage = "https://github.com/tfausak/rattletrap#readme"; description = "Parse and generate Rocket League replays"; license = stdenv.lib.licenses.mit; @@ -151972,6 +153697,20 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "rawfilepath_0_2_4" = callPackage + ({ mkDerivation, base, bytestring, unix }: + mkDerivation { + pname = "rawfilepath"; + version = "0.2.4"; + sha256 = "cbb01b49f7ff0271a8c6e4124f93515e6cdabf9581278594e19dd916b6bd5bd3"; + libraryHaskellDepends = [ base bytestring unix ]; + testHaskellDepends = [ base bytestring ]; + homepage = "https://github.com/xtendo-org/rawfilepath#readme"; + description = "Use RawFilePath instead of FilePath"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "rawr" = callPackage ({ mkDerivation, base, criterion, deepseq, doctest, ghc-datasize , ghc-prim, lens, tasty, tasty-hunit, template-haskell @@ -152095,21 +153834,26 @@ self: { }) {}; "rcu" = callPackage - ({ mkDerivation, atomic-primops, base, directory, doctest, filepath - , hlint, parallel, primitive, stm, transformers + ({ mkDerivation, atomic-primops, base, Cabal, cabal-doctest + , containers, criterion, deepseq, doctest, ghc-prim, hlint + , optparse-applicative, parallel, primitive, rdtsc, time + , transformers }: mkDerivation { pname = "rcu"; - version = "0.1"; - sha256 = "06d31a3da492590af81479119ba0f6c5d4ddbf15e8cd78af1cc80a56d34895ed"; + version = "0.2"; + sha256 = "e367e86af84e81be215a50036676d7203d9e5eefb6eee9f05ccee0f0fce10845"; isLibrary = true; isExecutable = true; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ - atomic-primops base parallel primitive transformers + atomic-primops base ghc-prim parallel primitive transformers ]; - executableHaskellDepends = [ base stm transformers ]; - testHaskellDepends = [ - base directory doctest filepath hlint parallel + executableHaskellDepends = [ base transformers ]; + testHaskellDepends = [ base doctest hlint parallel ]; + benchmarkHaskellDepends = [ + base containers criterion deepseq ghc-prim optparse-applicative + primitive rdtsc time transformers ]; homepage = "http://github.com/ekmett/rcu/"; description = "Read-Copy-Update for Haskell"; @@ -153001,6 +154745,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "records-sop" = callPackage + ({ mkDerivation, base, deepseq, generics-sop, ghc-prim, hspec + , should-not-typecheck + }: + mkDerivation { + pname = "records-sop"; + version = "0.1.0.0"; + sha256 = "4161e7e5331307382eb088b6820b3582092955742808a5f56a164e5a47d0fd46"; + libraryHaskellDepends = [ base deepseq generics-sop ghc-prim ]; + testHaskellDepends = [ + base deepseq generics-sop hspec should-not-typecheck + ]; + description = "Record subtyping and record utilities with generics-sop"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "records-th" = callPackage ({ mkDerivation, aeson, base, data-default, kinds, records , template-haskell, text, type-functions, unordered-containers @@ -154813,7 +156573,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "relational-query_0_9_0_1" = callPackage + "relational-query_0_9_1_0" = callPackage ({ mkDerivation, array, base, bytestring, containers, dlist , names-th, persistable-record, quickcheck-simple, sql-words , template-haskell, text, th-reify-compat, time, time-locale-compat @@ -154821,8 +156581,8 @@ self: { }: mkDerivation { pname = "relational-query"; - version = "0.9.0.1"; - sha256 = "2dedf32ee73538fc3608bbbc062dd3f2daf6572d4282972cd872c57a772257c3"; + version = "0.9.1.0"; + sha256 = "cc0c805a16d342d1d0511033571487a1872f541990f2083d577ddc6f059d62db"; libraryHaskellDepends = [ array base bytestring containers dlist names-th persistable-record sql-words template-haskell text th-reify-compat time @@ -154857,7 +156617,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "relational-query-HDBC_0_6_1_0" = callPackage + "relational-query-HDBC_0_6_2_0" = callPackage ({ mkDerivation, base, containers, convertible, dlist, HDBC , HDBC-session, names-th, persistable-record, relational-query , relational-schemas, template-haskell, th-data-compat @@ -154865,8 +156625,8 @@ self: { }: mkDerivation { pname = "relational-query-HDBC"; - version = "0.6.1.0"; - sha256 = "377ce34c521df92099a82915a16b776aa14e9dc0a5c1e644a91150a0d3e29d0c"; + version = "0.6.2.0"; + sha256 = "23f792a3249de1dc516be8fa45f0302b7a06139788a423745c2cb1168b983871"; libraryHaskellDepends = [ base containers convertible dlist HDBC HDBC-session names-th persistable-record relational-query relational-schemas @@ -154895,6 +156655,25 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "relational-record_0_1_8_0" = callPackage + ({ mkDerivation, base, persistable-record + , persistable-types-HDBC-pg, relational-query + , relational-query-HDBC + }: + mkDerivation { + pname = "relational-record"; + version = "0.1.8.0"; + sha256 = "0e98593a72d3acaa4c50433b1209c6fb975aebcbea56b5659ea225caf6a7ff7b"; + libraryHaskellDepends = [ + base persistable-record persistable-types-HDBC-pg relational-query + relational-query-HDBC + ]; + homepage = "http://khibino.github.io/haskell-relational-record/"; + description = "Meta package of Relational Record"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "relational-record-examples" = callPackage ({ mkDerivation, base, HDBC, HDBC-session, HDBC-sqlite3 , persistable-record, relational-query, relational-query-HDBC @@ -154902,8 +156681,8 @@ self: { }: mkDerivation { pname = "relational-record-examples"; - version = "0.3.1.4"; - sha256 = "e0bced76ceb888bd7c2e38afc0df18468f272af8ee68de15dddbcc9ea7809f67"; + version = "0.3.2.1"; + sha256 = "1b226c5e00d162161afe18406df33c7aae392cac9ed2a02e1707e7a7c5eb0bf8"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -154913,6 +156692,7 @@ self: { ]; description = "Examples of Haskell Relationa Record"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "relational-schemas" = callPackage @@ -154923,6 +156703,8 @@ self: { pname = "relational-schemas"; version = "0.1.3.1"; sha256 = "d13137773f21b73add30ef9659dc5abc0f5b51ab33c2061c9e9983e4d47151bd"; + revision = "2"; + editedCabalFile = "0f69bbc05aaa50ef00ca00de4a4cf8274e60dd71d48e4df337dcb456bda5a354"; libraryHaskellDepends = [ base bytestring containers persistable-record relational-query template-haskell time @@ -155763,8 +157545,8 @@ self: { pname = "req"; version = "0.2.0"; sha256 = "e64e56622f1ec06df83e2c8516effa49058b4d7196c28127ab98190cc320ebbc"; - revision = "2"; - editedCabalFile = "5895d467759fc89c2007336012c7ab38b6af831e925fce72fb98cd04be602417"; + revision = "3"; + editedCabalFile = "b77f15fa1001785ea46659f8ae987ea9cd4ef394fb9abf212300d77284ba1ad3"; libraryHaskellDepends = [ aeson authenticate-oauth base blaze-builder bytestring case-insensitive connection data-default-class http-api-data @@ -155899,6 +157681,18 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "resin" = callPackage + ({ mkDerivation, base, ghc-prim, semigroupoids }: + mkDerivation { + pname = "resin"; + version = "0.1.0.2"; + sha256 = "6fddc4a7f236c07f8fa8512ba35704257178322fa47f92e85d972891038a13ee"; + libraryHaskellDepends = [ base ghc-prim semigroupoids ]; + homepage = "http://github.com/cartazio/resin"; + description = "High performance variable binders"; + license = stdenv.lib.licenses.bsd2; + }) {}; + "resistor-cube" = callPackage ({ mkDerivation, base, hmatrix, transformers, utility-ht }: mkDerivation { @@ -156138,8 +157932,8 @@ self: { pname = "rest-core"; version = "0.39"; sha256 = "d760d0547fc1a99cd949dde08b7945fb93af24f4e55d45ecf410c352d5005404"; - revision = "6"; - editedCabalFile = "38c82ac051ac1cda463e93d4704be00680ee24fc044eb1cabcf48789306a8635"; + revision = "7"; + editedCabalFile = "d678b034006e93f3407bb96b4e56bddc53d1c784714f72c06d0655b4791fe939"; libraryHaskellDepends = [ aeson aeson-utils base base-compat bytestring case-insensitive errors fclabels hxt hxt-pickle-utils json-schema mtl mtl-compat @@ -156191,8 +157985,8 @@ self: { pname = "rest-gen"; version = "0.20.0.0"; sha256 = "81a9486136f91773371858f9d3e248b80458e7d55aab11f17cc158c3ce68d542"; - revision = "7"; - editedCabalFile = "8cd3ba2ec87976c3118b1de8d9172104e3a136f0afd9443e935130435fbc4c7d"; + revision = "8"; + editedCabalFile = "c2307e61b5976419cb52f3651131d07feebdfe092e2ff25e7a6c9653d4d628f4"; libraryHaskellDepends = [ aeson base base-compat blaze-html Cabal code-builder directory fclabels filepath hashable haskell-src-exts HStringTemplate hxt @@ -156251,8 +158045,8 @@ self: { pname = "rest-stringmap"; version = "0.2.0.6"; sha256 = "66e5a32f04cfcf9826296b3c053c22caa745fd890ccc6ea9199c34529507524a"; - revision = "5"; - editedCabalFile = "40fd386dc256a7a2b53e188b69b202f6623a5baa93c04ac2fe5c5389adb250f1"; + revision = "6"; + editedCabalFile = "213fd569be02903225151d3c78e5d9fc1b55e590bef90f0cb80dc36a92acd68b"; libraryHaskellDepends = [ aeson base containers hashable hxt json-schema tostring unordered-containers @@ -156401,6 +158195,31 @@ self: { license = stdenv.lib.licenses.asl20; }) {}; + "rethinkdb_2_2_0_10" = callPackage + ({ mkDerivation, aeson, async, base, base64-bytestring, binary + , bytestring, containers, criterion, data-default, doctest, mtl + , network, scientific, text, time, unordered-containers + , utf8-string, vector + }: + mkDerivation { + pname = "rethinkdb"; + version = "2.2.0.10"; + sha256 = "bbb3fcdec56e3e7916acf97267cccd6022e16bbda0cdb4fa626bc1c216137852"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64-bytestring binary bytestring containers + data-default mtl network scientific text time unordered-containers + utf8-string vector + ]; + testHaskellDepends = [ base doctest ]; + benchmarkHaskellDepends = [ aeson async base criterion text ]; + homepage = "http://github.com/atnnn/haskell-rethinkdb"; + description = "A driver for RethinkDB 2.2"; + license = stdenv.lib.licenses.asl20; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "rethinkdb-client-driver" = callPackage ({ mkDerivation, aeson, base, binary, bytestring, containers , criterion, hashable, hspec, hspec-smallcheck, mtl, network @@ -156649,6 +158468,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "rfc1413-server" = callPackage + ({ mkDerivation, base, network-simple, rfc1413-types }: + mkDerivation { + pname = "rfc1413-server"; + version = "0.0.0.0"; + sha256 = "68d42e62eb817c4922462fdcb89a53e329a8798bf9852675692436ac9f2bbd18"; + libraryHaskellDepends = [ base network-simple rfc1413-types ]; + homepage = "https://github.com/cotrone/rfc1413-server#readme"; + description = "rfc1413 server"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "rfc1413-types" = callPackage + ({ mkDerivation, base, bytestring }: + mkDerivation { + pname = "rfc1413-types"; + version = "0.0.0.0"; + sha256 = "4541701c58a0cebf9e37900de07f8c4c1144c2ae671afaf31d447e2f2f07ced3"; + libraryHaskellDepends = [ base bytestring ]; + homepage = "https://github.com/cotrone/rfc1413-types#readme"; + description = "An rfc1413 parser and response renderer"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "rfc3339" = callPackage ({ mkDerivation, base, timerep }: mkDerivation { @@ -158064,8 +159907,8 @@ self: { }: mkDerivation { pname = "rtcm"; - version = "0.1.9"; - sha256 = "f5187739a6c450ed71299c1bb2b077751c45df297d18be8af80e0c8941b6f850"; + version = "0.1.11"; + sha256 = "d058af9c226f2dc4c4cc4adc334327cee55708713298419ed6f70a2e56facf5a"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -158110,6 +159953,7 @@ self: { homepage = "https://github.com/adamwalker/hrtlsdr"; description = "Bindings to librtlsdr"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) rtl-sdr;}; "rtnetlink" = callPackage @@ -158130,6 +159974,7 @@ self: { homepage = "https://gitlab.com/formaltech/rtnetlink-hs"; description = "Manipulate network devices, addresses, and routes on Linux"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "rtorrent-rpc" = callPackage @@ -158209,6 +160054,7 @@ self: { homepage = "https://github.com/mtolly/rubberband"; description = "Binding to the C++ audio stretching library Rubber Band"; license = stdenv.lib.licenses.gpl3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) rubberband;}; "ruby-marshal" = callPackage @@ -158460,6 +160306,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "s-expression" = callPackage + ({ mkDerivation, base, derive-monoid, lens, semigroups }: + mkDerivation { + pname = "s-expression"; + version = "0.0.0"; + sha256 = "cc5c317892914608bf286cc04bad932e08939f2737a5ced6250481881b8c570f"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base derive-monoid lens semigroups ]; + executableHaskellDepends = [ base ]; + homepage = "https://github.com/sboosali/s-expression#readme"; + description = "simple general-purpose s-expressions"; + license = stdenv.lib.licenses.mit; + }) {}; + "s3-signer" = callPackage ({ mkDerivation, base, base64-bytestring, cryptohash, http-types , time, utf8-string @@ -158701,6 +160562,30 @@ self: { license = stdenv.lib.licenses.publicDomain; }) {}; + "safecopy_0_9_3_2" = callPackage + ({ mkDerivation, array, base, bytestring, cereal, containers, lens + , lens-action, old-time, QuickCheck, quickcheck-instances, tasty + , tasty-quickcheck, template-haskell, text, time, vector + }: + mkDerivation { + pname = "safecopy"; + version = "0.9.3.2"; + sha256 = "05f5508d8e6db1f71056096373e5123586fdd704f3765cc9857f1bffb2e46b37"; + libraryHaskellDepends = [ + array base bytestring cereal containers old-time template-haskell + text time vector + ]; + testHaskellDepends = [ + array base cereal containers lens lens-action QuickCheck + quickcheck-instances tasty tasty-quickcheck template-haskell time + vector + ]; + homepage = "https://github.com/acid-state/safecopy"; + description = "Binary serialization with version control"; + license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "safecopy-store" = callPackage ({ mkDerivation, array, base, bytestring, containers, lens , lens-action, old-time, QuickCheck, quickcheck-instances, store @@ -158709,8 +160594,8 @@ self: { }: mkDerivation { pname = "safecopy-store"; - version = "0.9.2"; - sha256 = "17e37e713a1dc86a50a16589ebc7e087e9896bdfe40918350b6f546a4992007b"; + version = "0.9.4"; + sha256 = "a4350a8d61d85e9f7f84c4cce63e1ec5e70e5c43c45029ce3ee8af08e4c810c4"; libraryHaskellDepends = [ array base bytestring containers old-time store store-core template-haskell text time vector @@ -159178,24 +161063,25 @@ self: { "sarsi" = callPackage ({ mkDerivation, async, attoparsec, base, binary, bytestring, Cabal - , containers, cryptonite, directory, filepath, fsnotify, machines - , machines-binary, machines-io, machines-process, msgpack, network - , process, stm, text, unordered-containers, vector + , containers, cryptonite, data-msgpack, directory, filepath + , fsnotify, machines, machines-binary, machines-io + , machines-process, network, process, stm, text + , unordered-containers, vector }: mkDerivation { pname = "sarsi"; - version = "0.0.3.0"; - sha256 = "5dce7ea1ce2288c62069f98f3757357b41a0385338edb4e741d9ef59f0243861"; + version = "0.0.4.0"; + sha256 = "c9c7327e22b6d42e780ff5c1cf2e4c871ce54ec6a374500ec124213721ad6753"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ async attoparsec base binary bytestring containers cryptonite - directory filepath fsnotify machines machines-binary machines-io - machines-process msgpack network process stm text vector + data-msgpack directory filepath fsnotify machines machines-binary + machines-io machines-process network process stm text vector ]; executableHaskellDepends = [ - base binary bytestring Cabal containers directory filepath fsnotify - machines machines-binary machines-io machines-process msgpack + base binary bytestring Cabal containers data-msgpack directory + filepath machines machines-binary machines-io machines-process network process text unordered-containers vector ]; homepage = "http://github.com/aloiscochard/sarsi"; @@ -159385,8 +161271,8 @@ self: { }: mkDerivation { pname = "sbp"; - version = "2.2.0"; - sha256 = "4964d3c77c2b9ddc0da60a2cbd26820628f796f463ca41d6fc243e3c93ad69bd"; + version = "2.2.1"; + sha256 = "1976f73f04b3115d765a475a10d1e92e936077cf484757210fc65ab0bffc49e1"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -159460,15 +161346,15 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "sbv_5_15" = callPackage + "sbv_6_0" = callPackage ({ mkDerivation, array, async, base, base-compat, containers , crackNum, data-binary-ieee754, deepseq, directory, filepath, ghc , HUnit, mtl, old-time, pretty, process, QuickCheck, random, syb }: mkDerivation { pname = "sbv"; - version = "5.15"; - sha256 = "2364c29cb4cd20c8489e76689aa885072bf51faf2f60b208ec58be3d5ae5d719"; + version = "6.0"; + sha256 = "88dc1abfbe118150a4ca114820fcaf278deb75ec2e38787a841ee24285601966"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -159588,8 +161474,8 @@ self: { }: mkDerivation { pname = "scalpel"; - version = "0.5.0"; - sha256 = "1635b45543cac398a5c0a54cb3bd6fffb7d11150ddbc55b3fbd92b7a6736632f"; + version = "0.5.1"; + sha256 = "20df66433570a2ca754f14058a47fb00519d9a75bb822fc3fd1769a83c608b0d"; libraryHaskellDepends = [ base bytestring curl data-default scalpel-core tagsoup text ]; @@ -159605,8 +161491,8 @@ self: { }: mkDerivation { pname = "scalpel-core"; - version = "0.5.0"; - sha256 = "b24a0dbfa4ebfba9e20b08e2b2f9f39c27bd575e1652d1bab944ae2784e00dda"; + version = "0.5.1"; + sha256 = "8c05b86853b737fbed4144dc9c7bbb7743525c305f9529f59776df97bfe229a9"; libraryHaskellDepends = [ base bytestring containers data-default fail regex-base regex-tdfa tagsoup text vector @@ -160754,6 +162640,7 @@ self: { executableHaskellDepends = [ base data-default-class sdl2 vector ]; description = "Bindings to SDL2_mixer"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) SDL2_mixer;}; "sdl2-ttf" = callPackage @@ -160772,6 +162659,7 @@ self: { executableHaskellDepends = [ base linear sdl2 ]; description = "Binding to libSDL2-ttf"; license = stdenv.lib.licenses.mit; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) SDL2; inherit (pkgs) SDL2_ttf;}; "sdnv" = callPackage @@ -160927,6 +162815,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "search-algorithms_0_2_0" = callPackage + ({ mkDerivation, base, containers, doctest, hspec }: + mkDerivation { + pname = "search-algorithms"; + version = "0.2.0"; + sha256 = "73839172aa5cd99e99e39edada80126fc131f05069e46d0d31c9f3a9441988cf"; + libraryHaskellDepends = [ base containers ]; + testHaskellDepends = [ base containers doctest hspec ]; + homepage = "https://github.com/devonhollowood/search-algorithms#readme"; + description = "Common graph search algorithms"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "sec" = callPackage ({ mkDerivation, base, template-haskell }: mkDerivation { @@ -161014,23 +162916,24 @@ self: { }) {}; "secp256k1" = callPackage - ({ mkDerivation, base, base16-bytestring, binary, bytestring - , cereal, cryptohash, entropy, HUnit, largeword, mtl, QuickCheck + ({ mkDerivation, base, base16-bytestring, binary, bytestring, Cabal + , cryptohash, entropy, HUnit, largeword, mtl, QuickCheck , string-conversions, test-framework, test-framework-hunit , test-framework-quickcheck2 }: mkDerivation { pname = "secp256k1"; - version = "0.4.6"; - sha256 = "50568cc5ebf50125b222c208c0e0dc580dd9b69266c39ec9e458600f5bff40c1"; + version = "0.4.8"; + sha256 = "13fb455af6874fb9a52adb85a52bfcfbcab5e80eb18b410fa088a92cabd3db4a"; + setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ - base base16-bytestring binary bytestring cereal entropy largeword - mtl QuickCheck string-conversions + base base16-bytestring binary bytestring entropy largeword mtl + QuickCheck string-conversions ]; testHaskellDepends = [ - base base16-bytestring bytestring cryptohash entropy HUnit mtl - QuickCheck string-conversions test-framework test-framework-hunit - test-framework-quickcheck2 + base base16-bytestring binary bytestring cryptohash entropy HUnit + mtl QuickCheck string-conversions test-framework + test-framework-hunit test-framework-quickcheck2 ]; homepage = "http://github.com/haskoin/secp256k1-haskell#readme"; description = "Bindings for secp256k1 library from Bitcoin Core"; @@ -161160,8 +163063,10 @@ self: { }: mkDerivation { pname = "selda"; - version = "0.1.2.0"; - sha256 = "8eedfc94f4e792756710bdd50ec89dd4655dce25956cf0015ea9f75fe4116385"; + version = "0.1.6.0"; + sha256 = "f9c615d3f37deb2eb2169d9a901198cb1216ceef576128f9f9b0e0363dd434bd"; + revision = "2"; + editedCabalFile = "1984c9def6f245d8c7e20f578bbe0dd4217059dcd65901a36b298251f70ecb3f"; libraryHaskellDepends = [ base exceptions hashable mtl psqueues text time unordered-containers @@ -161177,8 +163082,8 @@ self: { }: mkDerivation { pname = "selda-postgresql"; - version = "0.1.1.0"; - sha256 = "d7424f901d1c46ef50e55f2ad0e97d8304d2ef8c674df384732761f229fe8386"; + version = "0.1.3.0"; + sha256 = "da98e4a38498bb5e24c4c67377466ef0b1ed412d7e0e2e41c7451326461e9e1e"; libraryHaskellDepends = [ base bytestring exceptions postgresql-libpq selda text ]; @@ -161188,13 +163093,15 @@ self: { }) {}; "selda-sqlite" = callPackage - ({ mkDerivation, base, direct-sqlite, exceptions, selda, text }: + ({ mkDerivation, base, direct-sqlite, directory, exceptions, selda + , text + }: mkDerivation { pname = "selda-sqlite"; - version = "0.1.1.0"; - sha256 = "ed7d175665d65424b63412b47a55d6b660c4b8983e2251cff334f57d531f0b20"; + version = "0.1.3.0"; + sha256 = "213429400ee7381536c5ff72adf19149bca1ce71d39a46f376a965b3515b6156"; libraryHaskellDepends = [ - base direct-sqlite exceptions selda text + base direct-sqlite directory exceptions selda text ]; homepage = "https://github.com/valderman/selda"; description = "SQLite backend for the Selda database EDSL"; @@ -162110,6 +164017,8 @@ self: { pname = "servant"; version = "0.10"; sha256 = "e1daa9ba2b759615341345a17a95833729ae3200af12dacec07507a95a4b331e"; + revision = "1"; + editedCabalFile = "b2b19327461e3836e98d59d5652fb8ef1935e1e89dd687a621a9d9a98794a272"; setupHaskellDepends = [ base Cabal directory filepath ]; libraryHaskellDepends = [ aeson attoparsec base base-compat bytestring case-insensitive @@ -162181,8 +164090,8 @@ self: { ({ mkDerivation, base, doctest, Glob, hspec, QuickCheck, yaml }: mkDerivation { pname = "servant-auth"; - version = "0.2.6.1"; - sha256 = "25c5d31edca69294229bc0aaeb359e8c97f4ba2014cb95cd55265ec7cc7fad59"; + version = "0.2.7.0"; + sha256 = "aac33cf16baa40afa153fc027bf5ac17d84f763b7e1b955c5c4d6262a8721048"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base doctest Glob hspec QuickCheck yaml ]; homepage = "http://github.com/plow-technologies/servant-auth#readme"; @@ -162198,8 +164107,8 @@ self: { }: mkDerivation { pname = "servant-auth-client"; - version = "0.2.6.1"; - sha256 = "53855164942526c019c5b88c6b3c11ee9b80200b204b083b4313016e0960775f"; + version = "0.2.7.0"; + sha256 = "936edea6283026fac79516a72168633c95796c6ad789eca56c48f23aba5984b3"; libraryHaskellDepends = [ base bytestring servant servant-auth servant-client text ]; @@ -162243,7 +164152,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "servant-auth-cookie_0_5_0_1" = callPackage + "servant-auth-cookie_0_5_0_2" = callPackage ({ mkDerivation, base, base64-bytestring, blaze-builder, bytestring , cereal, cookie, criterion, cryptonite, data-default, deepseq , exceptions, hspec, http-api-data, http-types, memory, mtl @@ -162252,8 +164161,8 @@ self: { }: mkDerivation { pname = "servant-auth-cookie"; - version = "0.5.0.1"; - sha256 = "05933224b1eeb1c3e44e1c01c337fade7c9da864a0ed1727118fd3d9aa10c1ad"; + version = "0.5.0.2"; + sha256 = "ce3af5b4b71ae4a8b7c7f740a8dfc6569ca91d02e0ff3e174415d52585176399"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -162279,8 +164188,8 @@ self: { }: mkDerivation { pname = "servant-auth-docs"; - version = "0.2.6.1"; - sha256 = "76c6a4e9cf4979df461de017d43df6944c837aec90bc0543b17f66ee6d280d77"; + version = "0.2.7.0"; + sha256 = "a53f9fbe1308a7e8611a7fdbd69d7aa90b9ad5ed2f0b96fedeb6a5219733e4c6"; libraryHaskellDepends = [ base lens servant servant-auth servant-docs text ]; @@ -162340,8 +164249,8 @@ self: { }: mkDerivation { pname = "servant-auth-server"; - version = "0.2.6.1"; - sha256 = "5a850a6c011a72a5c3fea1285122fd8f295f31591a413b977385736d3fd8b877"; + version = "0.2.7.0"; + sha256 = "26a79eb1bdb54dc54b927a2aa01fa137a6d350b20a98311fd0522f08203dca38"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -162377,8 +164286,8 @@ self: { }: mkDerivation { pname = "servant-auth-swagger"; - version = "0.2.6.1"; - sha256 = "ef8001b5f9301522264ed06fdd3ef5772c23d7ae08abe8656047ba950e461a4d"; + version = "0.2.7.0"; + sha256 = "22d755a38ec318b37e5aa4cc92014c82666cee2b89349d792d8b9b0b4191e865"; libraryHaskellDepends = [ base lens servant servant-auth servant-swagger swagger2 text ]; @@ -162398,8 +164307,8 @@ self: { }: mkDerivation { pname = "servant-auth-token"; - version = "0.4.4.0"; - sha256 = "60cc885befaf7a53d2252617e982d8f6a89c43051438a6b1cf3c102786c03a38"; + version = "0.4.5.0"; + sha256 = "a714aeac91c01cf31c309d7e9d769153a7aeab82168dcda68accc6772c77e461"; libraryHaskellDepends = [ aeson-injector base bytestring containers mtl pwstore-fast servant-auth-token-api servant-server text time transformers uuid @@ -162439,8 +164348,8 @@ self: { }: mkDerivation { pname = "servant-auth-token-api"; - version = "0.4.2.0"; - sha256 = "2c9349c10789fccc0b11249305748b7868daa3e1f639b5be8c7c2b075246236c"; + version = "0.4.2.1"; + sha256 = "0eefacb5619f27ddcb744c6a18233f9a9d45777310533b1badf63375c20c561b"; libraryHaskellDepends = [ aeson aeson-injector base lens raw-strings-qq servant servant-docs servant-swagger swagger2 text @@ -162477,19 +164386,19 @@ self: { "servant-auth-token-persistent" = callPackage ({ mkDerivation, aeson-injector, base, bytestring, containers - , ghc-prim, monad-control, mtl, persistent, persistent-postgresql - , persistent-template, servant-auth-token, servant-auth-token-api - , servant-server, text, time, transformers, transformers-base, uuid + , ghc-prim, monad-control, mtl, persistent, persistent-template + , servant-auth-token, servant-auth-token-api, servant-server, text + , time, transformers, transformers-base, uuid }: mkDerivation { pname = "servant-auth-token-persistent"; - version = "0.4.0.0"; - sha256 = "8b2a6cbc45e3f52ac5d12cd05c052373ca758599672b6086b3148e0dd5f9a075"; + version = "0.5.0.0"; + sha256 = "20d2347537829258f34f543df5ecbb60b49362c0d97b0f240a1f9a563624d4e5"; libraryHaskellDepends = [ aeson-injector base bytestring containers ghc-prim monad-control - mtl persistent persistent-postgresql persistent-template - servant-auth-token servant-auth-token-api servant-server text time - transformers transformers-base uuid + mtl persistent persistent-template servant-auth-token + servant-auth-token-api servant-server text time transformers + transformers-base uuid ]; homepage = "https://github.com/ncrashed/servant-auth-token#readme"; description = "Persistent backend for servant-auth-token server"; @@ -162525,6 +164434,31 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "servant-checked-exceptions" = callPackage + ({ mkDerivation, aeson, base, bytestring, deepseq, doctest, Glob + , hspec-wai, http-media, lens, servant, servant-client + , servant-docs, servant-server, tasty, tasty-hspec, tasty-hunit + , text, wai + }: + mkDerivation { + pname = "servant-checked-exceptions"; + version = "0.3.0.2"; + sha256 = "d733366c36b9e9693b1dd5378f13b89bf9145d6f771d6a5deec01ca06a8fe96d"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring deepseq http-media lens servant + servant-client servant-docs servant-server text + ]; + testHaskellDepends = [ + base bytestring doctest Glob hspec-wai servant servant-server tasty + tasty-hspec tasty-hunit wai + ]; + homepage = "https://github.com/cdepillabout/servant-checked-exceptions"; + description = "Checked exceptions for Servant APIs"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "servant-client" = callPackage ({ mkDerivation, aeson, attoparsec, base, base-compat , base64-bytestring, bytestring, deepseq, exceptions, hspec @@ -162568,6 +164502,8 @@ self: { pname = "servant-client"; version = "0.10"; sha256 = "55e411ac7e38a5c1b77d8d3c2320369be36a7b7181e27bb5ac4fba308ef93eaa"; + revision = "2"; + editedCabalFile = "81423acd420339d6a421d46223f8f70d5772797b3b597d5a9d889c2fffd0bc48"; libraryHaskellDepends = [ aeson attoparsec base base-compat base64-bytestring bytestring exceptions generics-sop http-api-data http-client http-client-tls @@ -162926,8 +164862,8 @@ self: { pname = "servant-js"; version = "0.9.3"; sha256 = "086905a2c5d8903910b415b71f007c28cb6de9bccc4ab273e7ed944ceeca2cc2"; - revision = "1"; - editedCabalFile = "d1012bbe974704eef8d067abd6051846b8262290911c54f87fb1f10f1d9e6dcf"; + revision = "2"; + editedCabalFile = "fc952cd50824cfaa61027f1b3addae7659f6ad4a757f1a07cbbce68284d28d54"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -163170,7 +165106,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "servant-purescript_0_7_0_0" = callPackage + "servant-purescript_0_8_0_0" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, directory , filepath, http-types, lens, mainland-pretty, purescript-bridge , servant, servant-foreign, servant-server, servant-subscriber @@ -163178,8 +165114,8 @@ self: { }: mkDerivation { pname = "servant-purescript"; - version = "0.7.0.0"; - sha256 = "672cf63144b54f3f3de3662794a06270d806d5a7575d52156f3b487eb637d6f8"; + version = "0.8.0.0"; + sha256 = "9783f725d668009322e8d179114b6dd7773bb68ae7810b09a30ad3124b104a40"; libraryHaskellDepends = [ aeson base bytestring containers directory filepath http-types lens mainland-pretty purescript-bridge servant servant-foreign @@ -163203,8 +165139,8 @@ self: { }: mkDerivation { pname = "servant-pushbullet-client"; - version = "0.1.0.0"; - sha256 = "185b20038906ae4e74dc08eb6723502444c9a9aa272f0051aed8325c31be6a1f"; + version = "0.2.0.0"; + sha256 = "cfd1cf92205ef9f55b29f12527b40d9ac7d0b32531970435fde4c19432ab019c"; libraryHaskellDepends = [ aeson base http-api-data http-client http-client-tls microlens microlens-th pushbullet-types scientific servant servant-client @@ -163214,6 +165150,29 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "servant-py" = callPackage + ({ mkDerivation, aeson, base, base-compat, bytestring, charset + , hspec, hspec-expectations, lens, QuickCheck, servant + , servant-foreign, text + }: + mkDerivation { + pname = "servant-py"; + version = "0.1.0.4"; + sha256 = "a6fb12ea493ea42fb26bfec0c6fa6db6292a1eb38876ad20e311f8e02d678431"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring charset lens servant servant-foreign text + ]; + testHaskellDepends = [ + aeson base base-compat bytestring hspec hspec-expectations lens + QuickCheck servant servant-foreign text + ]; + homepage = "https://github.com/pellagic-puffbomb/servant-py#readme"; + description = "Automatically derive python functions to query servant webservices"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "servant-quickcheck" = callPackage ({ mkDerivation, aeson, base, base-compat, bytestring , case-insensitive, clock, data-default-class, hspec, hspec-core @@ -163361,6 +165320,8 @@ self: { pname = "servant-server"; version = "0.10"; sha256 = "99d14d23ea67832401b4bca7e5cb75b8c557e6dc7a8f38870c3b9d701179073d"; + revision = "1"; + editedCabalFile = "4332581ae3248c16017f88461abf6eef9fbad2ca86e86a2e8a013f9adc665973"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal directory filepath ]; @@ -163801,6 +165762,24 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "services" = callPackage + ({ mkDerivation, aeson, base, binary, bytestring, containers + , http-types, monad-logger, tasty, tasty-hunit, text, wai + }: + mkDerivation { + pname = "services"; + version = "0.2.0"; + sha256 = "010218ab69f6b76c05723fae4925789433a54d5503b66f84da1afc6c1043136b"; + libraryHaskellDepends = [ + aeson base binary bytestring containers http-types monad-logger + text wai + ]; + testHaskellDepends = [ base tasty tasty-hunit ]; + homepage = "https://github.com/seanhess/services#readme"; + description = "Tools for building services"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "servius" = callPackage ({ mkDerivation, base, blaze-builder, blaze-html, bytestring , http-types, markdown, shakespeare, text, wai, wai-app-static @@ -164561,8 +166540,8 @@ self: { ({ mkDerivation, base, basic-prelude, directory, shake }: mkDerivation { pname = "shakers"; - version = "0.0.17"; - sha256 = "b8705c18de95396e5b816f9f72967fbbc181579f382021cda6e2f7bd7b1cb5e3"; + version = "0.0.18"; + sha256 = "fb35d95017789d492b63e4a71e6ad7ce50d32968d1e17ddb34ef164749d787ce"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base basic-prelude directory shake ]; @@ -164581,32 +166560,6 @@ self: { }: mkDerivation { pname = "shakespeare"; - version = "2.0.12.1"; - sha256 = "057d7153a19a4f28a012f30b5d54b9e1296695ff94ccdfa23c28fa82bd3488ac"; - libraryHaskellDepends = [ - aeson base blaze-html blaze-markup bytestring containers directory - exceptions ghc-prim parsec process scientific template-haskell text - time transformers unordered-containers vector - ]; - testHaskellDepends = [ - aeson base blaze-html blaze-markup bytestring containers directory - exceptions ghc-prim hspec HUnit parsec process template-haskell - text time transformers - ]; - homepage = "http://www.yesodweb.com/book/shakespearean-templates"; - description = "A toolkit for making compile-time interpolated templates"; - license = stdenv.lib.licenses.mit; - maintainers = with stdenv.lib.maintainers; [ psibi ]; - }) {}; - - "shakespeare_2_0_13" = callPackage - ({ mkDerivation, aeson, base, blaze-html, blaze-markup, bytestring - , containers, directory, exceptions, ghc-prim, hspec, HUnit, parsec - , process, scientific, template-haskell, text, time, transformers - , unordered-containers, vector - }: - mkDerivation { - pname = "shakespeare"; version = "2.0.13"; sha256 = "a67e7f3186a7f33b90f97377b5e68ed20f76daedc564fcf578cf17a7f7ac580e"; libraryHaskellDepends = [ @@ -164622,7 +166575,6 @@ self: { homepage = "http://www.yesodweb.com/book/shakespearean-templates"; description = "A toolkit for making compile-time interpolated templates"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; maintainers = with stdenv.lib.maintainers; [ psibi ]; }) {}; @@ -164696,6 +166648,7 @@ self: { homepage = "https://github.com/brcha/shakespeare-sass"; description = "SASS support for Shakespeare and Yesod"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "shakespeare-text" = callPackage @@ -164991,8 +166944,8 @@ self: { }: mkDerivation { pname = "shellmate"; - version = "0.3.4.1"; - sha256 = "a66fb8d53eac5736dd7d69c7835af60ca2afff389c65e0972ab199b0983a6430"; + version = "0.3.4.2"; + sha256 = "05e9de1c5111fc51a7fe01c49e1a819c16f5cce6cff9526b82ca1e296bd96d88"; libraryHaskellDepends = [ base bytestring directory filepath process temporary transformers unix @@ -165011,6 +166964,8 @@ self: { pname = "shellmate-extras"; version = "0.3.4.1"; sha256 = "f3dd62394e99af6cf92cb50c8ce1f3cd819448eda3009e8c11bb312e26f9b82e"; + revision = "1"; + editedCabalFile = "c68752dbdcaf7a0dd35cb579dce1f86b9caf89cf1f311d6b390351bc1555a887"; libraryHaskellDepends = [ base bytestring feed http-conduit http-types mime-types shellmate tagsoup text utf8-string xml @@ -165098,8 +167053,8 @@ self: { }: mkDerivation { pname = "shentong"; - version = "0.3.1"; - sha256 = "b751f79e565899e36b71c6b31a51adb46fd61899b3cdadbb05631d03514bb523"; + version = "0.3.2"; + sha256 = "83e80610da9f11bbc95eddc34c64c81c059db2dc1b03fe781edbbf9b16e32914"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -165110,6 +167065,27 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "shift" = callPackage + ({ mkDerivation, aeson, ansi-terminal, base, bytestring + , composition, data-default, lens, optparse-applicative + , system-fileio, system-filepath, text, turtle + }: + mkDerivation { + pname = "shift"; + version = "0.1.0.0"; + sha256 = "edfae8568d881734c3d1f6321912abe3854168a16f25168d8d91ecce8859ab82"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson ansi-terminal base bytestring composition data-default lens + optparse-applicative system-fileio system-filepath text turtle + ]; + executableHaskellDepends = [ base ]; + homepage = "https://github.com/vmchale/teleport#readme"; + description = "A tool to quickly switch between directories"; + license = stdenv.lib.licenses.mit; + }) {}; + "shikensu" = callPackage ({ mkDerivation, aeson, base, bytestring, directory, filepath, flow , Glob, tasty, tasty-hunit, text, unordered-containers @@ -165196,6 +167172,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "shopify" = callPackage + ({ mkDerivation, aeson, aeson-pretty, attoparsec, base + , base64-bytestring, bytestring, containers + , control-monad-exception, http-conduit, http-types, lifted-base + , mtl, resourcet, safe, text, time, unordered-containers, vector + }: + mkDerivation { + pname = "shopify"; + version = "0"; + sha256 = "b098a87f3773c957b20ecadd5b644d3613ed99ca3b6aa6ae1c2374edc7089a9f"; + libraryHaskellDepends = [ + aeson aeson-pretty attoparsec base base64-bytestring bytestring + containers control-monad-exception http-conduit http-types + lifted-base mtl resourcet safe text time unordered-containers + vector + ]; + homepage = "https://oss.xkcd.com/"; + description = "A haskell API binding for shopify.com"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "shortcircuit" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -165273,12 +167270,12 @@ self: { }) {}; "show-please" = callPackage - ({ mkDerivation, base, mtl, parsec, template-haskell }: + ({ mkDerivation, base, mtl, parsec, template-haskell, time }: mkDerivation { pname = "show-please"; - version = "0.3"; - sha256 = "1abd203bf8f0ac863f38f1be813594e0ab30ad5b79aa31730926586c40db642e"; - libraryHaskellDepends = [ base mtl parsec template-haskell ]; + version = "0.4.2"; + sha256 = "d4f2087d80e95ac5d56afa6952e54bc7482a5d073b964c8a1db7a481d786d999"; + libraryHaskellDepends = [ base mtl parsec template-haskell time ]; homepage = "https://github.com/ddssff/show-please"; description = "A wrapper type V with improved Show instances"; license = stdenv.lib.licenses.bsd3; @@ -165638,8 +167635,8 @@ self: { }: mkDerivation { pname = "simple"; - version = "0.11.1"; - sha256 = "74c3cfb9a92cbaebb47e8abbc7d918947a05340fd0d4fab1661ff8e777f5e815"; + version = "0.11.2"; + sha256 = "ef53672eded47626cd125dc0759628fcfead2f2e271a0cae1092d4ff244e0614"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -165819,8 +167816,8 @@ self: { }: mkDerivation { pname = "simple-effects"; - version = "0.7.0.2"; - sha256 = "367158bb1e97fea1bd5f61e9390bb0a50a0ad26ab11c97c16a0fdc495be17f4c"; + version = "0.8.0.2"; + sha256 = "5cea737cab099fed0c4c1a19a2defc922e0a9b439b0073b0c2294b5d1afb3a12"; libraryHaskellDepends = [ array base exceptions list-t monad-control MonadRandom mtl text transformers transformers-base @@ -165962,7 +167959,7 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "simple-log_0_8_5" = callPackage + "simple-log_0_9_1" = callPackage ({ mkDerivation, async, base, base-unicode-symbols, containers , data-default, deepseq, directory, exceptions, filepath, hformat , hspec, microlens, microlens-platform, mmorph, mtl, SafeSemaphore @@ -165970,8 +167967,8 @@ self: { }: mkDerivation { pname = "simple-log"; - version = "0.8.5"; - sha256 = "f435eafb411f38ab43c09c034bb3829acbbb51adcb96ebb6436d5409a967c9a5"; + version = "0.9.1"; + sha256 = "44ede88d2db8e0e9d5f58f9cba379ce42dbd2bd0a6fe2053c476953586f0de7e"; libraryHaskellDepends = [ async base base-unicode-symbols containers data-default deepseq directory exceptions filepath hformat microlens microlens-platform @@ -167003,7 +169000,7 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "skylighting_0_3_2" = callPackage + "skylighting_0_3_3" = callPackage ({ mkDerivation, aeson, attoparsec, base, binary, blaze-html , bytestring, case-insensitive, containers, criterion, Diff , directory, filepath, HUnit, hxt, mtl, pretty-show, random @@ -167012,8 +169009,8 @@ self: { }: mkDerivation { pname = "skylighting"; - version = "0.3.2"; - sha256 = "fe48ff596d3971cbb285a1ce677d1527285845feaed16d46fcb49b8ad50767bc"; + version = "0.3.3"; + sha256 = "098641785342d15eec56f17d4c782c15c5467c5bc86ba612109325ad50a7ec97"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -167583,25 +169580,12 @@ self: { ({ mkDerivation, aeson, base, linear, text, vector }: mkDerivation { pname = "smoothie"; - version = "0.4.2.6"; - sha256 = "9225877499dd0b4504d91e26403b23f6d8517c097073abf07982fc5041836174"; - libraryHaskellDepends = [ aeson base linear text vector ]; - homepage = "https://github.com/phaazon/smoothie"; - description = "Smooth curves via several interpolation modes"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "smoothie_0_4_2_7" = callPackage - ({ mkDerivation, aeson, base, linear, text, vector }: - mkDerivation { - pname = "smoothie"; version = "0.4.2.7"; sha256 = "84561c3463d870312fafb48680ef0122688814fcbb2eb605570c48cceb64deb2"; libraryHaskellDepends = [ aeson base linear text vector ]; homepage = "https://github.com/phaazon/smoothie"; description = "Smooth curves via several interpolation modes"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "smsaero" = callPackage @@ -167841,8 +169825,8 @@ self: { pname = "snap"; version = "1.0.0.1"; sha256 = "293f16c1404793121d3d85abb6287bbb32f5dc1d82b12146d4bb650052322db8"; - revision = "3"; - editedCabalFile = "97c68769fdd4f5693b365da446e17a0181e2fcc2e41dbc56f37804a3204646ef"; + revision = "4"; + editedCabalFile = "131aa86ec1be2b9a61f98d9df5d102c78f505a09c1d843c1d57a626e1ee18ead"; libraryHaskellDepends = [ aeson attoparsec base bytestring cereal clientsession configurator containers directory directory-tree dlist filepath hashable heist @@ -167968,6 +169952,43 @@ self: { pname = "snap-core"; version = "1.0.2.0"; sha256 = "e48eba4727169b9c599c6de1791deb881eeee12e25658a30590116b450e5b65c"; + revision = "1"; + editedCabalFile = "fd40a0961a8517e3566670b095595ac2ac20ee4ea2615b32479046ac498a6b05"; + libraryHaskellDepends = [ + attoparsec base bytestring bytestring-builder case-insensitive + containers directory filepath hashable HUnit io-streams lifted-base + monad-control mtl network network-uri old-locale random readable + regex-posix text time transformers transformers-base unix-compat + unordered-containers vector + ]; + testHaskellDepends = [ + attoparsec base bytestring bytestring-builder case-insensitive + containers deepseq directory filepath hashable HUnit io-streams + lifted-base monad-control mtl network network-uri old-locale + parallel QuickCheck random readable regex-posix test-framework + test-framework-hunit test-framework-quickcheck2 text time + transformers transformers-base unix-compat unordered-containers + vector zlib + ]; + homepage = "http://snapframework.com/"; + description = "Snap: A Haskell Web Framework (core interfaces and types)"; + license = stdenv.lib.licenses.bsd3; + }) {}; + + "snap-core_1_0_2_1" = callPackage + ({ mkDerivation, attoparsec, base, bytestring, bytestring-builder + , case-insensitive, containers, deepseq, directory, filepath + , hashable, HUnit, io-streams, lifted-base, monad-control, mtl + , network, network-uri, old-locale, parallel, QuickCheck, random + , readable, regex-posix, test-framework, test-framework-hunit + , test-framework-quickcheck2, text, time, transformers + , transformers-base, unix-compat, unordered-containers, vector + , zlib + }: + mkDerivation { + pname = "snap-core"; + version = "1.0.2.1"; + sha256 = "de903d5dc4640f49cfebb41b4442f4901057a8627694373639d3972ccdcca11d"; libraryHaskellDepends = [ attoparsec base bytestring bytestring-builder case-insensitive containers directory filepath hashable HUnit io-streams lifted-base @@ -167987,6 +170008,7 @@ self: { homepage = "http://snapframework.com/"; description = "Snap: A Haskell Web Framework (core interfaces and types)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "snap-cors" = callPackage @@ -168176,6 +170198,50 @@ self: { pname = "snap-server"; version = "1.0.2.0"; sha256 = "677f29595331aeee82b5bbbe3fdbe228093c387c6527d4b70c5492de0c5bd549"; + revision = "1"; + editedCabalFile = "bc24161a1b1eec7d7568f34dcc4b3d44a9b6df793c5e63aa5f03ca8681984553"; + configureFlags = [ "-fopenssl" ]; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + attoparsec base blaze-builder bytestring bytestring-builder + case-insensitive clock containers filepath HsOpenSSL io-streams + io-streams-haproxy lifted-base mtl network old-locale + openssl-streams snap-core text time unix unix-compat vector + ]; + testHaskellDepends = [ + attoparsec base base16-bytestring blaze-builder bytestring + bytestring-builder case-insensitive clock containers deepseq + directory filepath HsOpenSSL http-common http-streams HUnit + io-streams io-streams-haproxy lifted-base monad-control mtl network + old-locale openssl-streams parallel QuickCheck random snap-core + test-framework test-framework-hunit test-framework-quickcheck2 text + threads time transformers unix unix-compat vector + ]; + benchmarkHaskellDepends = [ + attoparsec base blaze-builder bytestring bytestring-builder + criterion io-streams io-streams-haproxy snap-core vector + ]; + homepage = "http://snapframework.com/"; + description = "A web server for the Snap Framework"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "snap-server_1_0_2_1" = callPackage + ({ mkDerivation, attoparsec, base, base16-bytestring, blaze-builder + , bytestring, bytestring-builder, case-insensitive, clock + , containers, criterion, deepseq, directory, filepath, HsOpenSSL + , http-common, http-streams, HUnit, io-streams, io-streams-haproxy + , lifted-base, monad-control, mtl, network, old-locale + , openssl-streams, parallel, QuickCheck, random, snap-core + , test-framework, test-framework-hunit, test-framework-quickcheck2 + , text, threads, time, transformers, unix, unix-compat, vector + }: + mkDerivation { + pname = "snap-server"; + version = "1.0.2.1"; + sha256 = "4ededc6cf9ee007fb3a7489384e222ae8cfb58970697e3e4de40c70763dc4899"; configureFlags = [ "-fopenssl" ]; isLibrary = true; isExecutable = true; @@ -168723,10 +170789,8 @@ self: { }: mkDerivation { pname = "snaplet-postgresql-simple"; - version = "1.0.1.0"; - sha256 = "c747f9a0145c22f36441bab504a45ab20fc68ad46a8383c5f4db6686cd0dee7d"; - revision = "1"; - editedCabalFile = "94e77c56c9493373c7d57f50b6dc62e178cf37d294aa046bd66f71f6102b3372"; + version = "1.0.2.0"; + sha256 = "67addba074108043671e93d03713e37be528a12daea3eb0b5c08e41a2c9dfea9"; libraryHaskellDepends = [ base bytestring clientsession configurator lens lifted-base monad-control mtl postgresql-simple resource-pool snap text @@ -169581,6 +171645,7 @@ self: { ]; description = "simpe tool to serve piped data over http and websocket"; license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "socketio" = callPackage @@ -169731,8 +171796,8 @@ self: { }: mkDerivation { pname = "solr"; - version = "0.4.1"; - sha256 = "b9499555ee76c3a185384570b8d207f707a9dfa7d3529f06413d76fb164f4016"; + version = "0.4.2"; + sha256 = "2a7ece8b981e40b21df2ec385e7f5a5ad49a53d5553684043c9e57482399c71f"; libraryHaskellDepends = [ attoparsec-data base base-prelude bytestring bytestring-tree-builder case-insensitive contravariant http-client @@ -169788,6 +171853,18 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "sort" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "sort"; + version = "0.0.0.1"; + sha256 = "ce4221e43b8b02615a0d0c50b7b9b40057505d0c7148fe00eed2be74bec4a242"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/cdornan/sort"; + description = "A Haskell sorting toolkit"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "sort-by-pinyin" = callPackage ({ mkDerivation, air, air-extra, air-th, base, bytestring , containers, text @@ -170597,6 +172674,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "spiros" = callPackage + ({ mkDerivation, base, bytestring, containers, data-default-class + , deepseq, directory, hashable, mtl, process, safe, semigroups + , split, stm, text, time, transformers, unordered-containers + , vector, vinyl, wl-pprint-text + }: + mkDerivation { + pname = "spiros"; + version = "0.0.0"; + sha256 = "ceb17a2005efe9151c8c0b40606e6d39063c2331cb941182bbcbb26f18e3491a"; + libraryHaskellDepends = [ + base bytestring containers data-default-class deepseq directory + hashable mtl process safe semigroups split stm text time + transformers unordered-containers vector vinyl wl-pprint-text + ]; + homepage = "http://github.com/sboosali/spiros#readme"; + description = "my custom prelude"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "splay" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -170705,6 +172802,8 @@ self: { pname = "split"; version = "0.2.3.1"; sha256 = "7615b60adee20c19ddafd9d74456e8fe8e4274e2c676a5e858511b664205c688"; + revision = "1"; + editedCabalFile = "6089e920a72947806dff273664af651f5f128339fab9fc1d823bfedb102a6ecd"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base QuickCheck ]; description = "Combinator library for splitting lists"; @@ -171143,6 +173242,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "sqlcipher" = callPackage + ({ mkDerivation, base, bytestring, directory, filepath, hspec + , openssl, pretty, temporary, time, utf8-string + }: + mkDerivation { + pname = "sqlcipher"; + version = "1.0.1.0"; + sha256 = "820806a880763a41dc6b97ac7fc4b5330b124e21fe91109d97567ca78bcc5d60"; + libraryHaskellDepends = [ + base bytestring directory pretty time utf8-string + ]; + librarySystemDepends = [ openssl ]; + testHaskellDepends = [ base filepath hspec temporary ]; + homepage = "http://github.com/figome/haskell-sqlcipher"; + description = "Haskell binding to sqlcipher"; + license = stdenv.lib.licenses.bsd3; + }) {inherit (pkgs) openssl;}; + "sqlite" = callPackage ({ mkDerivation, base, bytestring, directory, pretty, sqlite, time , utf8-string @@ -171322,6 +173439,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "srcloc_0_5_1_1" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "srcloc"; + version = "0.5.1.1"; + sha256 = "3148a6c6997b0cb92a0c698f4cb362deee6946ce61235c9dbd5cadf56ff61a17"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/mainland/srcloc"; + description = "Data types for managing source code locations"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "srec" = callPackage ({ mkDerivation, base, bytestring }: mkDerivation { @@ -171775,18 +173905,18 @@ self: { "stack-run" = callPackage ({ mkDerivation, ansi-terminal, async, base, bytestring, Cabal - , conduit, conduit-extra, directory, filepath, MissingH - , projectroot, stm, terminal-size, time, vty + , conduit, conduit-extra, directory, filepath, MissingH, stm + , terminal-size, time, vty }: mkDerivation { pname = "stack-run"; - version = "0.1.1.3"; - sha256 = "5e70f11916ca2fe00e86b78ba0aa0762b8fe98b34881247035d25273f41ecaf7"; + version = "0.1.1.4"; + sha256 = "7366bb6519949fd7e929a8a6ba04b2877b0fa7a5a1aa1e594ebf0ac59b06ac9b"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ ansi-terminal async base bytestring Cabal conduit conduit-extra - directory filepath MissingH projectroot stm terminal-size time vty + directory filepath MissingH stm terminal-size time vty ]; homepage = "https://github.com/yamadapc/stack-run"; description = "An equivalent to cabal run for stack"; @@ -172017,6 +174147,25 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "stackage-query" = callPackage + ({ mkDerivation, base, Cabal, containers, directory, filepath + , optparse-applicative, process, stackage-types, text, yaml + }: + mkDerivation { + pname = "stackage-query"; + version = "0.1.0"; + sha256 = "3280023d2858a244e7dccb2dd1e137972e1b5cfa7ea880613669bb3eca453b61"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base Cabal containers directory filepath optparse-applicative + process stackage-types text yaml + ]; + homepage = "https://github.com/juhp/stackage-query"; + description = "Stackage package query"; + license = stdenv.lib.licenses.mit; + }) {}; + "stackage-sandbox" = callPackage ({ mkDerivation, attoparsec, base, bytestring, conduit-combinators , conduit-extra, directory, filepath, optparse-applicative, process @@ -172270,19 +174419,6 @@ self: { ({ mkDerivation, base, checkers, mtl, QuickCheck }: mkDerivation { pname = "state-plus"; - version = "0.1.2"; - sha256 = "c6ed155137d40262bf8aa38155bd93ecdc4bdbcb4ac83f5b980eeb8545ee377d"; - libraryHaskellDepends = [ base mtl ]; - testHaskellDepends = [ base checkers mtl QuickCheck ]; - description = "MonadPlus for StateT"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "state-plus_0_1_3" = callPackage - ({ mkDerivation, base, checkers, mtl, QuickCheck }: - mkDerivation { - pname = "state-plus"; version = "0.1.3"; sha256 = "a990264ab1d26aee077b035c1959fb792e5b015e46010d08dd065dea2a4cb0bc"; libraryHaskellDepends = [ base mtl ]; @@ -172483,6 +174619,35 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "statistics_0_14_0_0" = callPackage + ({ mkDerivation, aeson, base, binary, deepseq, erf, HUnit, ieee754 + , math-functions, monad-par, mwc-random, primitive, QuickCheck + , test-framework, test-framework-hunit, test-framework-quickcheck2 + , vector, vector-algorithms, vector-binary-instances + , vector-th-unbox + }: + mkDerivation { + pname = "statistics"; + version = "0.14.0.0"; + sha256 = "d5857c2dfb4b860db567cc9444788f104c077caeac528deaf87a59309a65dfe2"; + revision = "1"; + editedCabalFile = "6432ecb4f7824f517b3ad2f8195b8554cb373621a26a72f4b511bdb5099a145c"; + libraryHaskellDepends = [ + aeson base binary deepseq erf math-functions monad-par mwc-random + primitive vector vector-algorithms vector-binary-instances + vector-th-unbox + ]; + testHaskellDepends = [ + aeson base binary erf HUnit ieee754 math-functions mwc-random + primitive QuickCheck test-framework test-framework-hunit + test-framework-quickcheck2 vector vector-algorithms + ]; + homepage = "https://github.com/bos/statistics"; + description = "A library of statistical types, data, and functions"; + license = stdenv.lib.licenses.bsd2; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "statistics-dirichlet" = callPackage ({ mkDerivation, base, deepseq, hmatrix-special , nonlinear-optimization, vector @@ -172631,8 +174796,8 @@ self: { }: mkDerivation { pname = "staversion"; - version = "0.1.4.0"; - sha256 = "f09fd5ad180ddac974201de99eaf74ff6d63cc172857f9d41379eb1707eda09a"; + version = "0.2.0.0"; + sha256 = "f95cbd5547606c56f31dec76f89a2e33de8c8663fe36cbd55bfb8aa085a9a56b"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -172772,6 +174937,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "stego-uuid" = callPackage + ({ mkDerivation, base, bytestring, cryptonite, memory, random, uuid + }: + mkDerivation { + pname = "stego-uuid"; + version = "1.0.0.0"; + sha256 = "db2f6c0ca28e9207824dfc3d5e2aced3da57022a4585fd968617a8aa9c75edb3"; + libraryHaskellDepends = [ base bytestring cryptonite memory uuid ]; + testHaskellDepends = [ base random uuid ]; + homepage = "https://github.com/dimitri-xyz/stego-uuid#readme"; + description = "Generator and verifier for steganographic numbers"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "stemmer" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -173495,6 +175674,59 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "store_0_4_3_1" = callPackage + ({ mkDerivation, array, async, base, base-orphans + , base64-bytestring, bytestring, cereal, cereal-vector, conduit + , containers, contravariant, criterion, cryptohash, deepseq + , directory, filepath, free, ghc-prim, hashable, hspec + , hspec-smallcheck, integer-gmp, lifted-base, monad-control + , mono-traversable, network, primitive, resourcet, safe, semigroups + , smallcheck, store-core, streaming-commons, syb, template-haskell + , text, th-lift, th-lift-instances, th-orphans, th-reify-many + , th-utilities, time, transformers, unordered-containers, vector + , vector-binary-instances, void, weigh + }: + mkDerivation { + pname = "store"; + version = "0.4.3.1"; + sha256 = "3781cbede555ac43365cd723ff4c4f6a06bf94659fcc811b5c21937b5b480b41"; + libraryHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring conduit + containers contravariant cryptohash deepseq directory filepath free + ghc-prim hashable hspec hspec-smallcheck integer-gmp lifted-base + monad-control mono-traversable network primitive resourcet safe + semigroups smallcheck store-core streaming-commons syb + template-haskell text th-lift th-lift-instances th-orphans + th-reify-many th-utilities time transformers unordered-containers + vector void + ]; + testHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring cereal + cereal-vector conduit containers contravariant criterion cryptohash + deepseq directory filepath free ghc-prim hashable hspec + hspec-smallcheck integer-gmp lifted-base monad-control + mono-traversable network primitive resourcet safe semigroups + smallcheck store-core streaming-commons syb template-haskell text + th-lift th-lift-instances th-orphans th-reify-many th-utilities + time transformers unordered-containers vector + vector-binary-instances void weigh + ]; + benchmarkHaskellDepends = [ + array async base base-orphans base64-bytestring bytestring conduit + containers contravariant criterion cryptohash deepseq directory + filepath free ghc-prim hashable hspec hspec-smallcheck integer-gmp + lifted-base monad-control mono-traversable network primitive + resourcet safe semigroups smallcheck store-core streaming-commons + syb template-haskell text th-lift th-lift-instances th-orphans + th-reify-many th-utilities time transformers unordered-containers + vector void + ]; + homepage = "https://github.com/fpco/store#readme"; + description = "Fast binary serialization"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "store-core_0_3" = callPackage ({ mkDerivation, base, bytestring, fail, ghc-prim, primitive, text , transformers @@ -173528,6 +175760,23 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "store-core_0_4_1" = callPackage + ({ mkDerivation, base, bytestring, fail, ghc-prim, primitive, text + , transformers + }: + mkDerivation { + pname = "store-core"; + version = "0.4.1"; + sha256 = "145285f9f26a64e9611e01749a0d569691a70fa898f5359bedcfca9dacb064b4"; + libraryHaskellDepends = [ + base bytestring fail ghc-prim primitive text transformers + ]; + homepage = "https://github.com/fpco/store#readme"; + description = "Fast and lightweight binary serialization"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "str" = callPackage ({ mkDerivation, base, base16-bytestring, bytestring, Crypto , hashable, MissingH, text, utf8-string @@ -173963,8 +176212,8 @@ self: { }: mkDerivation { pname = "strelka"; - version = "2"; - sha256 = "8273953fc6d54a7e1dc2c3f23c78c8ed6f4986c5e9a46222fc7e6831b2e24432"; + version = "2.0.1"; + sha256 = "24f70d15067c5f7ac097b2b0a9f65160b25f1a39f75ea605699ede97f5727589"; libraryHaskellDepends = [ attoparsec attoparsec-data base base-prelude base64-bytestring bifunctors bytestring bytestring-tree-builder hashable http-media @@ -174539,25 +176788,6 @@ self: { }: mkDerivation { pname = "strive"; - version = "3.0.2"; - sha256 = "94f1dcef7ded8a27365d448e2db70baa5fafc91fa047dbb35164f82fd84f0b0f"; - libraryHaskellDepends = [ - aeson base bytestring data-default gpolyline http-client - http-client-tls http-types template-haskell text time transformers - ]; - testHaskellDepends = [ base bytestring markdown-unlit time ]; - homepage = "https://github.com/tfausak/strive#readme"; - description = "A client for the Strava V3 API"; - license = stdenv.lib.licenses.mit; - }) {}; - - "strive_3_0_3" = callPackage - ({ mkDerivation, aeson, base, bytestring, data-default, gpolyline - , http-client, http-client-tls, http-types, markdown-unlit - , template-haskell, text, time, transformers - }: - mkDerivation { - pname = "strive"; version = "3.0.3"; sha256 = "95ac2cc6763cf9c6a409ec91dc438b53a1dd4993da42a901a7523a1598e6283d"; libraryHaskellDepends = [ @@ -174568,7 +176798,6 @@ self: { homepage = "https://github.com/tfausak/strive#readme"; description = "A client for the Strava V3 API"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "strptime" = callPackage @@ -174583,14 +176812,18 @@ self: { }) {}; "structs" = callPackage - ({ mkDerivation, base, deepseq, directory, doctest, filepath - , ghc-prim, hlint, parallel, primitive + ({ mkDerivation, base, Cabal, cabal-doctest, deepseq, directory + , doctest, filepath, ghc-prim, hlint, parallel, primitive + , template-haskell }: mkDerivation { pname = "structs"; - version = "0"; - sha256 = "4ba635175f9db39b13d7ba7ecb2158c1c4228f33d0831e9dd48e5e247cda3970"; - libraryHaskellDepends = [ base deepseq ghc-prim primitive ]; + version = "0.1"; + sha256 = "1f0a20e43bed6a0a0c1e05e442a2f2ce0bd67c277b5e380aac2e17332e834f41"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; + libraryHaskellDepends = [ + base deepseq ghc-prim primitive template-haskell + ]; testHaskellDepends = [ base directory doctest filepath hlint parallel ]; @@ -174823,6 +177056,36 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "stylish-haskell_0_8_0_0" = callPackage + ({ mkDerivation, aeson, base, bytestring, containers, directory + , filepath, haskell-src-exts, HUnit, mtl, optparse-applicative + , strict, syb, test-framework, test-framework-hunit, yaml + }: + mkDerivation { + pname = "stylish-haskell"; + version = "0.8.0.0"; + sha256 = "1cb416acfbd730735627a347a09aaec16875c8abf5e0b0220db62551106ef594"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring containers directory filepath + haskell-src-exts mtl syb yaml + ]; + executableHaskellDepends = [ + aeson base bytestring containers directory filepath + haskell-src-exts mtl optparse-applicative strict syb yaml + ]; + testHaskellDepends = [ + aeson base bytestring containers directory filepath + haskell-src-exts HUnit mtl syb test-framework test-framework-hunit + yaml + ]; + homepage = "https://github.com/jaspervdj/stylish-haskell"; + description = "Haskell code prettifier"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "stylized" = callPackage ({ mkDerivation, ansi-terminal, base }: mkDerivation { @@ -174842,8 +177105,8 @@ self: { }: mkDerivation { pname = "styx"; - version = "1.2"; - sha256 = "6b8d91a85a65e64758f3eb13c863253318b5477fc12644bb796533b8b0ed3131"; + version = "1.3"; + sha256 = "9705e1060f0ed22a16b6f32a5ff9435ae6bf3d50a2bc5691900236de7ac4172f"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -175215,6 +177478,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "superbubbles" = callPackage + ({ mkDerivation, base, containers, hspec, mtl }: + mkDerivation { + pname = "superbubbles"; + version = "0.1.0"; + sha256 = "a046e78292225a60e0b0774fcbefa763ff6895cc15c036aa9dc89529bf94a1d2"; + revision = "3"; + editedCabalFile = "5f7db1d87ff58b49df5b184650486e68aee1b29f9e481ccf6e2016b6f36b8084"; + libraryHaskellDepends = [ base containers mtl ]; + testHaskellDepends = [ base containers hspec ]; + homepage = "https://github.com/bartavelle/superbubbles#readme"; + description = "Find \"superbubbles\", as described in https://arxiv.org/abs/1307.7925"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "superbuffer" = callPackage ({ mkDerivation, async, base, buffer-builder, bytestring, criterion , HTF, QuickCheck @@ -175563,17 +177841,20 @@ self: { , containers, doctest, generics-sop, Glob, hashable, hspec , http-media, HUnit, insert-ordered-containers, lens, mtl, network , QuickCheck, scientific, template-haskell, text, time - , transformers, unordered-containers, uuid-types, vector + , transformers, transformers-compat, unordered-containers + , uuid-types, vector }: mkDerivation { pname = "swagger2"; - version = "2.1.3"; - sha256 = "4d14f30ab538fc48d6b621f3082da6cf225d812f534a641babae0afebcc644ef"; + version = "2.1.4"; + sha256 = "85ade8fabae537abf1c8d4d8b2a7226b29f33d4d97dce8cd02104da817647f44"; + revision = "1"; + editedCabalFile = "565cb7b9ce116c18c54619bcc16e4fe37f0d39e0e657f673766728c3d45ccae9"; libraryHaskellDepends = [ aeson base base-compat bytestring containers generics-sop hashable http-media insert-ordered-containers lens mtl network scientific - template-haskell text time transformers unordered-containers - uuid-types vector + template-haskell text time transformers transformers-compat + unordered-containers uuid-types vector ]; testHaskellDepends = [ aeson aeson-qq base base-compat bytestring containers doctest Glob @@ -175663,8 +177944,8 @@ self: { }: mkDerivation { pname = "swish"; - version = "0.9.1.7"; - sha256 = "f816c8e7e6b264043ac7d6d8572e74aedbf3c455907fc6ab6d077d2f47893b80"; + version = "0.9.1.8"; + sha256 = "498f8e8b27b070a77a89652e1622b7dbee8ac5f1a9c8cc39dd93a41c566634ca"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -176413,8 +178694,8 @@ self: { }: mkDerivation { pname = "sys-process"; - version = "0.1.6"; - sha256 = "7838161f0acc22acdfcce3282e68be586c8833ec7c96e424471d07c3e6aac611"; + version = "0.2.0"; + sha256 = "098821af8b894b89b0013f8af12121674cf9671fd7d545fb2f851783522b54b6"; libraryHaskellDepends = [ base bifunctors directory filepath lens mtl notzero process semigroupoids semigroups transformers @@ -176428,6 +178709,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "sysinfo" = callPackage + ({ mkDerivation, base, hspec, hspec-expectations }: + mkDerivation { + pname = "sysinfo"; + version = "0.1.1"; + sha256 = "46db40f2d186956547cca98f5583b28828a2b50255fbd404272c381db64dca29"; + libraryHaskellDepends = [ base ]; + testHaskellDepends = [ base hspec hspec-expectations ]; + homepage = "https://github.com/psibi/sysinfo#readme"; + description = "Haskell Interface for getting overall system statistics"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "system-argv0" = callPackage ({ mkDerivation, base, bytestring, system-filepath, text }: mkDerivation { @@ -176527,12 +178821,12 @@ self: { }) {}; "system-info" = callPackage - ({ mkDerivation, base }: + ({ mkDerivation, base, process, regex }: mkDerivation { pname = "system-info"; - version = "0.1.0.5"; - sha256 = "aa1e2fec0ceb10b8916422d2e4421e6a6167a283344c7fd2c0fba5fec86f2c45"; - libraryHaskellDepends = [ base ]; + version = "0.1.0.7"; + sha256 = "fd971c2d3ec3e1ac7d4c15bbd88c07104e554f1fe64d77bb957a7f2a2f48445a"; + libraryHaskellDepends = [ base process regex ]; testHaskellDepends = [ base ]; homepage = "https://github.com/ChaosGroup/system-info"; description = "Get information about CPUs, memory, etc"; @@ -177446,6 +179740,22 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "tai" = callPackage + ({ mkDerivation, base, clock, lens, mtl, parsers, time, trifecta + , wreq + }: + mkDerivation { + pname = "tai"; + version = "0"; + sha256 = "bcdf41df641b4e4c26dd728e5b27e1b42e687e7a93e4a8db722272056baae7ce"; + libraryHaskellDepends = [ + base clock lens mtl parsers time trifecta wreq + ]; + homepage = "https://oss.xkcd.com/"; + description = "Support library to enable TAI usage on systems with time kept in UTC"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "tai64" = callPackage ({ mkDerivation, attoparsec, base, base16-bytestring, binary , bytestring, doctest, QuickCheck, text, time, vector @@ -177861,6 +180171,8 @@ self: { pname = "tasty"; version = "0.11.2"; sha256 = "d26fbc4e5112af9ec3ca0a4a45d0f5edc5ae6675ffd72f922acb768062db675e"; + revision = "1"; + editedCabalFile = "ec66d3652e04b38f56f3f9c850258ef87d6fa31b4f909343105449c549325800"; libraryHaskellDepends = [ ansi-terminal async base clock containers deepseq mtl optparse-applicative regex-tdfa stm tagged unbounded-delays @@ -177870,6 +180182,25 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "tasty_0_11_2_1" = callPackage + ({ mkDerivation, ansi-terminal, async, base, clock, containers + , deepseq, mtl, optparse-applicative, regex-tdfa, stm, tagged + , unbounded-delays + }: + mkDerivation { + pname = "tasty"; + version = "0.11.2.1"; + sha256 = "6956dfc8acf2ab20ff9bbe75f43e65a9ebd7abf5c11c5259d7134ad3d35ce2b9"; + libraryHaskellDepends = [ + ansi-terminal async base clock containers deepseq mtl + optparse-applicative regex-tdfa stm tagged unbounded-delays + ]; + homepage = "http://documentup.com/feuerbach/tasty"; + description = "Modern and extensible testing framework"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "tasty-ant-xml" = callPackage ({ mkDerivation, base, containers, directory, filepath , generic-deriving, ghc-prim, mtl, stm, tagged, tasty, transformers @@ -178640,6 +180971,8 @@ self: { pname = "tdigest"; version = "0.1"; sha256 = "0036b3aebe6556ced3a108579846346c9123d65c9dcd09c1d44435a64e3dc54b"; + revision = "1"; + editedCabalFile = "175789781df0bf1f1ba9e5380fe5b61b6238e90efce173ccff0fef73b766e876"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base base-compat binary deepseq reducers semigroupoids semigroups @@ -178663,6 +180996,8 @@ self: { pname = "tdigest-Chart"; version = "0"; sha256 = "74a806695cba25ebc96d80944b832d3423be4175496e319a52b6efc7c5f470a7"; + revision = "1"; + editedCabalFile = "592a67f5fa3ca6733298f6a359be9b85b02a33ad2ea18d5a8e317e0ee743f8ee"; libraryHaskellDepends = [ base base-compat Chart colour lens semigroupoids semigroups tdigest ]; @@ -178742,8 +181077,8 @@ self: { }: mkDerivation { pname = "telegram-api"; - version = "0.6.1.0"; - sha256 = "8eef15f861aa178b8df0766ebf45ff6badf8cf4920af8e0d1ba31f9074cf67db"; + version = "0.6.1.1"; + sha256 = "04107168c8b79a4596fb7f24960516fba0b38a14ac99efb128780f115bcc7eb3"; libraryHaskellDepends = [ aeson base bytestring http-api-data http-client http-media http-types mime-types mtl servant servant-client string-conversions @@ -178825,6 +181160,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "tempered" = callPackage + ({ mkDerivation, base, containers, directory, filepath, mtl + , optparse-applicative, parsec, process, yaml + }: + mkDerivation { + pname = "tempered"; + version = "0.2.0"; + sha256 = "4262c2c8e2a237aa0c04555a77036861f0d6dc858fd38eba90f471a307e9fde4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers directory filepath mtl parsec process yaml + ]; + executableHaskellDepends = [ + base containers directory mtl optparse-applicative + ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/ChrisPenner/tempered#readme"; + description = "A dead-simple shell interpolation templating utility"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "template" = callPackage ({ mkDerivation, base, mtl, text }: mkDerivation { @@ -179189,6 +181546,192 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "tensorflow" = callPackage + ({ mkDerivation, async, attoparsec, base, bytestring, c2hs + , containers, data-default, exceptions, fgl, HUnit, lens-family + , mainland-pretty, mtl, proto-lens, proto-lens-protoc, semigroups + , split, temporary, tensorflow, tensorflow-proto, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + , transformers, vector + }: + mkDerivation { + pname = "tensorflow"; + version = "0.1.0.1"; + sha256 = "44f3e204bcd71212ff91089fc299340153c505fcf462f2dc325c38cd0dcea262"; + libraryHaskellDepends = [ + async attoparsec base bytestring containers data-default exceptions + fgl lens-family mainland-pretty mtl proto-lens proto-lens-protoc + semigroups split temporary tensorflow-proto text transformers + vector + ]; + librarySystemDepends = [ tensorflow ]; + libraryToolDepends = [ c2hs ]; + testHaskellDepends = [ + attoparsec base bytestring HUnit lens-family proto-lens + tensorflow-proto test-framework test-framework-hunit + test-framework-quickcheck2 + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "TensorFlow bindings"; + license = stdenv.lib.licenses.asl20; + }) {tensorflow = null;}; + + "tensorflow-core-ops" = callPackage + ({ mkDerivation, base, bytestring, Cabal, directory, filepath + , lens-family, mainland-pretty, proto-lens, tensorflow + , tensorflow-opgen, text + }: + mkDerivation { + pname = "tensorflow-core-ops"; + version = "0.1.0.0"; + sha256 = "2fb3ac8cf017d0859e511f1cbce67249c67aa5e5d1793a99f5771854e9a418d5"; + setupHaskellDepends = [ + base bytestring Cabal directory filepath mainland-pretty proto-lens + tensorflow tensorflow-opgen text + ]; + libraryHaskellDepends = [ + base bytestring lens-family proto-lens tensorflow text + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Haskell wrappers for Core Tensorflow Ops"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-logging" = callPackage + ({ mkDerivation, base, bytestring, conduit, data-default, directory + , exceptions, filepath, hostname, HUnit, lens-family, proto-lens + , resourcet, stm, stm-chans, stm-conduit, temporary, tensorflow + , tensorflow-core-ops, tensorflow-ops, tensorflow-proto + , tensorflow-records-conduit, test-framework, test-framework-hunit + , text, time, transformers + }: + mkDerivation { + pname = "tensorflow-logging"; + version = "0.1.0.0"; + sha256 = "b78b9a403c574808d952f25ffc017435045c67de040273fde97b84c759972d69"; + libraryHaskellDepends = [ + base bytestring conduit data-default directory exceptions filepath + hostname lens-family proto-lens resourcet stm stm-chans stm-conduit + tensorflow tensorflow-core-ops tensorflow-ops tensorflow-proto + tensorflow-records-conduit text time transformers + ]; + testHaskellDepends = [ + base bytestring conduit data-default directory filepath HUnit + lens-family proto-lens resourcet temporary tensorflow-proto + tensorflow-records-conduit test-framework test-framework-hunit text + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "TensorBoard related functionality"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-opgen" = callPackage + ({ mkDerivation, base, bytestring, containers, filepath + , lens-family, mainland-pretty, optparse-applicative, proto-lens + , semigroups, tensorflow-proto, text + }: + mkDerivation { + pname = "tensorflow-opgen"; + version = "0.1.0.0"; + sha256 = "47ae7f0ef8e28cdf1f09aad79c28ab421e80310339d4372b848a3204a8b7a49a"; + libraryHaskellDepends = [ + base bytestring containers filepath lens-family mainland-pretty + optparse-applicative proto-lens semigroups tensorflow-proto text + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Code generation for TensorFlow operations"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-ops" = callPackage + ({ mkDerivation, base, bytestring, containers, criterion + , data-default, deepseq, fgl, HUnit, lens-family, mtl, proto-lens + , QuickCheck, random, temporary, tensorflow, tensorflow-core-ops + , tensorflow-proto, tensorflow-test, test-framework + , test-framework-hunit, test-framework-quickcheck2, text + , transformers, vector + }: + mkDerivation { + pname = "tensorflow-ops"; + version = "0.1.0.0"; + sha256 = "f49904c4c70a3525dee3a43431dcea32d059c80bbabda31d8e10f77cd6fba91a"; + libraryHaskellDepends = [ + base bytestring containers data-default fgl lens-family mtl + proto-lens tensorflow tensorflow-core-ops tensorflow-proto text + ]; + testHaskellDepends = [ + base bytestring data-default HUnit lens-family proto-lens + QuickCheck random temporary tensorflow tensorflow-core-ops + tensorflow-proto tensorflow-test test-framework + test-framework-hunit test-framework-quickcheck2 transformers vector + ]; + benchmarkHaskellDepends = [ + base criterion deepseq tensorflow transformers vector + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Friendly layer around TensorFlow bindings"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-proto" = callPackage + ({ mkDerivation, base, Cabal, proto-lens, proto-lens-protoc }: + mkDerivation { + pname = "tensorflow-proto"; + version = "0.1.0.0"; + sha256 = "b696782fb0383c5aafd595afe04b52590b266f97af601cd6b217397d773b681a"; + setupHaskellDepends = [ base Cabal proto-lens-protoc ]; + libraryHaskellDepends = [ base proto-lens proto-lens-protoc ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "TensorFlow protocol buffers"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-records" = callPackage + ({ mkDerivation, base, bytestring, cereal, snappy-framing + , test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "tensorflow-records"; + version = "0.1.0.0"; + sha256 = "f234d3f722c6f50c14dcb31e654a37765ec87ed82cd2344b8c78a0a77c919027"; + libraryHaskellDepends = [ base bytestring cereal snappy-framing ]; + testHaskellDepends = [ + base bytestring cereal test-framework test-framework-quickcheck2 + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Encoder and decoder for the TensorFlow \"TFRecords\" format"; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-records-conduit" = callPackage + ({ mkDerivation, base, bytestring, cereal-conduit, conduit + , conduit-extra, exceptions, resourcet, tensorflow-records + }: + mkDerivation { + pname = "tensorflow-records-conduit"; + version = "0.1.0.0"; + sha256 = "6c034801dd6450c8436fa8ec59031633c5739620553f7a960695a45e96278dca"; + libraryHaskellDepends = [ + base bytestring cereal-conduit conduit conduit-extra exceptions + resourcet tensorflow-records + ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Conduit wrappers for TensorFlow.Records."; + license = stdenv.lib.licenses.asl20; + }) {}; + + "tensorflow-test" = callPackage + ({ mkDerivation, base, HUnit, vector }: + mkDerivation { + pname = "tensorflow-test"; + version = "0.1.0.0"; + sha256 = "378217dde895daf6599a8d3fb07ed59de5e2d8024958277558faca190bb44afc"; + libraryHaskellDepends = [ base HUnit vector ]; + homepage = "https://github.com/tensorflow/haskell#readme"; + description = "Some common functions for test suites"; + license = stdenv.lib.licenses.asl20; + }) {}; + "term-rewriting" = callPackage ({ mkDerivation, ansi-wl-pprint, array, base, containers, HUnit , mtl, multiset, parsec, QuickCheck, union-find-array @@ -179284,12 +181827,12 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "terminfo_0_4_0_2" = callPackage + "terminfo_0_4_1_0" = callPackage ({ mkDerivation, base, ncurses }: mkDerivation { pname = "terminfo"; - version = "0.4.0.2"; - sha256 = "fea88b28443f5efd316c7699685b3925c0a7613992305f11af03746139d8f856"; + version = "0.4.1.0"; + sha256 = "3f53d7b1ae046a3767e6254f07eb7f91ec958a5e1633682677e292e8d7e9ff5d"; libraryHaskellDepends = [ base ]; librarySystemDepends = [ ncurses ]; homepage = "https://github.com/judah/terminfo"; @@ -180002,8 +182545,8 @@ self: { ({ mkDerivation, base, text, text-format, text-show }: mkDerivation { pname = "text-all"; - version = "0.3.0.2"; - sha256 = "1874b6d56a4e31e3754be6d7dadcb3f64dbc86fe473063631a4794f27fa13f85"; + version = "0.3.1.0"; + sha256 = "dec7bfb61c30fd263df65caa200954ea8c1947b2c67bcb023d1b071a45336284"; libraryHaskellDepends = [ base text text-format text-show ]; homepage = "http://github.com/aelve/text-all"; description = "Everything Data.Text related in one package"; @@ -180011,6 +182554,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "text-all_0_4_0_0" = callPackage + ({ mkDerivation, base, text, text-format }: + mkDerivation { + pname = "text-all"; + version = "0.4.0.0"; + sha256 = "4b9a595a9045aaca5d8381dce3454fc946591d408c018d38908387d71016be46"; + libraryHaskellDepends = [ base text text-format ]; + homepage = "http://github.com/aelve/text-all"; + description = "Everything Data.Text related in one package"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "text-and-plots" = callPackage ({ mkDerivation, base, blaze-html, bytestring, containers, markdown , text, unordered-containers @@ -180162,8 +182718,8 @@ self: { }: mkDerivation { pname = "text-icu-normalized"; - version = "0.3.0"; - sha256 = "2a82c5bad47e6b75551a70535aeb574214834b0b4fb190f1f10af750a3245ef0"; + version = "0.4.1"; + sha256 = "04441bfbc66a9901f23cb7d531a422e78f7b2bef69cd41ff07be4eb73d52955b"; libraryHaskellDepends = [ base base-unicode-symbols bytestring lens text text-icu ]; @@ -180461,14 +183017,14 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; - "text-region_0_2_0_0" = callPackage + "text-region_0_3_0_0" = callPackage ({ mkDerivation, aeson, base, base-unicode-symbols, bytestring , groups, hspec, lens, text }: mkDerivation { pname = "text-region"; - version = "0.2.0.0"; - sha256 = "a8d29fdbd9c185f53daf6b4d02f15336f32e2be4e3e1019549844a4e2023bef0"; + version = "0.3.0.0"; + sha256 = "cae9417e0ee0368d0c6e47d8c1a3b00446ae43d997c1d31451b41961dba5c977"; libraryHaskellDepends = [ aeson base base-unicode-symbols bytestring groups lens text ]; @@ -180544,6 +183100,43 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "text-show_3_6" = callPackage + ({ mkDerivation, array, base, base-compat, base-orphans, bifunctors + , bytestring, bytestring-builder, containers, contravariant + , criterion, deepseq, deriving-compat, generic-deriving + , ghc-boot-th, ghc-prim, hspec, integer-gmp, nats, QuickCheck + , quickcheck-instances, semigroups, tagged, template-haskell, text + , th-lift, transformers, transformers-compat, void + }: + mkDerivation { + pname = "text-show"; + version = "3.6"; + sha256 = "64bde3e39a2a9b8da0b4de9d53c9cec56b5307786cb6bee12f47f3fdae0b6f3f"; + libraryHaskellDepends = [ + array base base-compat bifunctors bytestring bytestring-builder + containers contravariant generic-deriving ghc-boot-th ghc-prim + integer-gmp nats semigroups tagged template-haskell text th-lift + transformers transformers-compat void + ]; + testHaskellDepends = [ + array base base-compat base-orphans bifunctors bytestring + bytestring-builder containers contravariant deriving-compat + generic-deriving ghc-boot-th ghc-prim hspec integer-gmp nats + QuickCheck quickcheck-instances semigroups tagged template-haskell + text th-lift transformers transformers-compat void + ]; + benchmarkHaskellDepends = [ + array base base-compat bifunctors bytestring bytestring-builder + containers contravariant criterion deepseq generic-deriving + ghc-boot-th ghc-prim integer-gmp nats semigroups tagged + template-haskell text th-lift transformers transformers-compat void + ]; + homepage = "https://github.com/RyanGlScott/text-show"; + description = "Efficient conversion of values into Text"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "text-show-instances" = callPackage ({ mkDerivation, base, base-compat, bifunctors, binary, bytestring , containers, directory, generic-deriving, ghc-boot-th, ghc-prim @@ -180578,6 +183171,40 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "text-show-instances_3_6" = callPackage + ({ mkDerivation, base, base-compat, bifunctors, binary, bytestring + , containers, directory, generic-deriving, ghc-boot-th, ghc-prim + , haskeline, hoopl, hpc, hspec, old-locale, old-time, pretty + , process, QuickCheck, quickcheck-instances, random, semigroups + , tagged, template-haskell, terminfo, text, text-show, th-orphans + , time, transformers, transformers-compat, unix + , unordered-containers, vector, xhtml + }: + mkDerivation { + pname = "text-show-instances"; + version = "3.6"; + sha256 = "b1b6782c2dee88d2c21c587b247d8cc6394edc5d9c38b31b07f80e99b84e3a84"; + libraryHaskellDepends = [ + base base-compat bifunctors binary bytestring containers directory + ghc-boot-th haskeline hoopl hpc old-locale old-time pretty process + random semigroups tagged template-haskell terminfo text text-show + time transformers transformers-compat unix unordered-containers + vector xhtml + ]; + testHaskellDepends = [ + base base-compat bifunctors binary bytestring containers directory + generic-deriving ghc-boot-th ghc-prim haskeline hoopl hpc hspec + old-locale old-time pretty process QuickCheck quickcheck-instances + random semigroups tagged template-haskell terminfo text text-show + th-orphans time transformers transformers-compat unix + unordered-containers vector xhtml + ]; + homepage = "https://github.com/RyanGlScott/text-show-instances"; + description = "Additional instances for text-show"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "text-stream-decode" = callPackage ({ mkDerivation, base, bytestring, criterion, deepseq, hspec, text }: @@ -180882,6 +183509,20 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "th-abstraction" = callPackage + ({ mkDerivation, base, containers, ghc-prim, template-haskell }: + mkDerivation { + pname = "th-abstraction"; + version = "0.1.0.0"; + sha256 = "bd412b4243b135a559f8c9fd60bf08212d27f8cb71644d8651136770fb7c2648"; + libraryHaskellDepends = [ + base containers ghc-prim template-haskell + ]; + testHaskellDepends = [ base template-haskell ]; + description = "Nicer interface to reified information about data types"; + license = stdenv.lib.licenses.isc; + }) {}; + "th-alpha" = callPackage ({ mkDerivation, base, containers, derive, mmorph, mtl, tasty , tasty-hunit, tasty-quickcheck, template-haskell, th-desugar @@ -180991,19 +183632,6 @@ self: { ({ mkDerivation, base, containers, syb, template-haskell }: mkDerivation { pname = "th-expand-syns"; - version = "0.4.2.0"; - sha256 = "66fed79828e9a13375f0f801f5ecc3763186667228ad91e19919219ff1654db9"; - libraryHaskellDepends = [ base containers syb template-haskell ]; - testHaskellDepends = [ base template-haskell ]; - homepage = "https://github.com/DanielSchuessler/th-expand-syns"; - description = "Expands type synonyms in Template Haskell ASTs"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "th-expand-syns_0_4_3_0" = callPackage - ({ mkDerivation, base, containers, syb, template-haskell }: - mkDerivation { - pname = "th-expand-syns"; version = "0.4.3.0"; sha256 = "9fee68a387610574ed6445022fdcd0879a7415d910dcb6618f1de5d2001e679d"; libraryHaskellDepends = [ base containers syb template-haskell ]; @@ -181011,7 +183639,6 @@ self: { homepage = "https://github.com/DanielSchuessler/th-expand-syns"; description = "Expands type synonyms in Template Haskell ASTs"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "th-extras" = callPackage @@ -181129,19 +183756,6 @@ self: { ({ mkDerivation, base, ghc-prim, template-haskell }: mkDerivation { pname = "th-lift"; - version = "0.7.6"; - sha256 = "326a2c9dac32506d5b7e5d9f3234c0e7a33a612256e4745bfb8de5a32803ecd1"; - libraryHaskellDepends = [ base ghc-prim template-haskell ]; - testHaskellDepends = [ base ghc-prim template-haskell ]; - homepage = "http://github.com/mboes/th-lift"; - description = "Derive Template Haskell's Lift class for datatypes"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "th-lift_0_7_7" = callPackage - ({ mkDerivation, base, ghc-prim, template-haskell }: - mkDerivation { - pname = "th-lift"; version = "0.7.7"; sha256 = "16c6fa6fbe972fa0d850698c147cd9a30dc0e201554d9a4ee9ade62dc807cbb5"; libraryHaskellDepends = [ base ghc-prim template-haskell ]; @@ -181149,7 +183763,6 @@ self: { homepage = "http://github.com/mboes/th-lift"; description = "Derive Template Haskell's Lift class for datatypes"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "th-lift-instances" = callPackage @@ -181435,8 +184048,8 @@ self: { pname = "these"; version = "0.7.3"; sha256 = "14339c111ec2caffcb2a9f64164a5dc307a0afb716925ddcb1774d9d442a3d9b"; - revision = "3"; - editedCabalFile = "acf48c0c351a4d79fc468cb1293e7b4cbc403a53981518c1d578473ce813cc12"; + revision = "4"; + editedCabalFile = "dcb32a117a7bc27b64a3721ee35ab1ad82352f10dd5a2234d45d040eef8a70c2"; libraryHaskellDepends = [ aeson base bifunctors binary containers data-default-class deepseq hashable keys mtl profunctors QuickCheck semigroupoids transformers @@ -181669,6 +184282,24 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "threepenny-editors" = callPackage + ({ mkDerivation, base, data-default, generics-sop, profunctors + , threepenny-gui + }: + mkDerivation { + pname = "threepenny-editors"; + version = "0.2.0.5"; + sha256 = "905090859bd221d51aeba34b691ad84fb9193d52ddd98659093acba16fd5d970"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base data-default generics-sop profunctors threepenny-gui + ]; + homepage = "https://github.com/pepeiborra/threepenny-editors"; + description = "Composable algebraic editors"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "threepenny-gui" = callPackage ({ mkDerivation, aeson, async, base, bytestring, containers , data-default, deepseq, filepath, hashable, network-uri, safe @@ -181677,8 +184308,8 @@ self: { }: mkDerivation { pname = "threepenny-gui"; - version = "0.7.0.1"; - sha256 = "b5802dbb6c43304d613373f464d6fd16a4f219a5d289be003a28c2c46cae44c8"; + version = "0.7.0.2"; + sha256 = "40223fac07d288cc111ffde1674278989300e525d323c10976f5f83a56b28479"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -181693,6 +184324,31 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "threepenny-gui_0_8_0_0" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, containers + , data-default, deepseq, exceptions, filepath, hashable + , network-uri, safe, snap-core, snap-server, stm, template-haskell + , text, transformers, unordered-containers, vault, vector + , websockets, websockets-snap + }: + mkDerivation { + pname = "threepenny-gui"; + version = "0.8.0.0"; + sha256 = "a1dbab095010005f9b2af9ec6ce9bfc533906bdf3498f90573d21227c1ac93fe"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async base bytestring containers data-default deepseq + exceptions filepath hashable network-uri safe snap-core snap-server + stm template-haskell text transformers unordered-containers vault + vector websockets websockets-snap + ]; + homepage = "http://wiki.haskell.org/Threepenny-gui"; + description = "GUI framework that uses the web browser as a display"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "threepenny-gui-contextmenu" = callPackage ({ mkDerivation, base, threepenny-gui }: mkDerivation { @@ -181725,12 +184381,12 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "threepenny-gui-flexbox_0_4_1" = callPackage + "threepenny-gui-flexbox_0_4_2" = callPackage ({ mkDerivation, base, clay, text, threepenny-gui }: mkDerivation { pname = "threepenny-gui-flexbox"; - version = "0.4.1"; - sha256 = "bca8c8b56f419559d3ce2a991737c52e38f4194cb1bdfcc4744e4a4de7fc7467"; + version = "0.4.2"; + sha256 = "86862538c0e8448ee7fc9b0b8c47e912587f26db6d1178660d74bf44dca9f0f5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base clay text threepenny-gui ]; @@ -182008,19 +184664,20 @@ self: { license = stdenv.lib.licenses.gpl3; }) {}; - "tidal_0_9_2" = callPackage - ({ mkDerivation, applicative-numbers, base, colour, containers - , hashable, hosc, mersenne-random-pure64, mtl, parsec, safe, text - , time, websockets + "tidal_0_9_4" = callPackage + ({ mkDerivation, base, colour, containers, hashable, hosc + , mersenne-random-pure64, mtl, parsec, safe, tasty, tasty-hunit + , text, time, websockets }: mkDerivation { pname = "tidal"; - version = "0.9.2"; - sha256 = "518187f765f2ccb70b83a65f833e4a6fa1a02be36519f27c53a738ef8c9bdc40"; + version = "0.9.4"; + sha256 = "f68e0da8e7eab9693a7cb33b6cd838999f1f81d902b31bb882a76e1b490649c4"; libraryHaskellDepends = [ - applicative-numbers base colour containers hashable hosc - mersenne-random-pure64 mtl parsec safe text time websockets + base colour containers hashable hosc mersenne-random-pure64 mtl + parsec safe text time websockets ]; + testHaskellDepends = [ base tasty tasty-hunit ]; homepage = "http://tidalcycles.org/"; description = "Pattern language for improvised music"; license = stdenv.lib.licenses.gpl3; @@ -182033,8 +184690,8 @@ self: { }: mkDerivation { pname = "tidal-midi"; - version = "0.9.2"; - sha256 = "ac9555387d046e382532d8816d57b2e4999b9713fb88e0cfbfe00f8252a8de60"; + version = "0.9.4"; + sha256 = "1b06296b35a860ae38c4d0983647cc2818519ca0bcd4658878e5d4593338d726"; libraryHaskellDepends = [ base containers PortMidi tidal time transformers ]; @@ -182063,8 +184720,8 @@ self: { ({ mkDerivation, base, cairo, colour, tidal }: mkDerivation { pname = "tidal-vis"; - version = "0.1.8"; - sha256 = "3cb3fab058e0a2891d33d02adac326ada6558892c0f58467625c44b99f262ac9"; + version = "0.9.3"; + sha256 = "b771cdc39adae7f78c6bd036d023bcec07dec00999aa8914c0d9ddef3f3b41ea"; libraryHaskellDepends = [ base cairo colour tidal ]; homepage = "http://yaxu.org/tidal/"; description = "Visual rendering for Tidal patterns"; @@ -182193,14 +184850,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "time_1_8_0_1" = callPackage + "time_1_8_0_2" = callPackage ({ mkDerivation, base, deepseq, QuickCheck, random, tasty , tasty-hunit, tasty-quickcheck, unix }: mkDerivation { pname = "time"; - version = "1.8.0.1"; - sha256 = "2baa9fdc280604413ecaf9761f7fd3443fe69019eec6fdc3e0333501fe701701"; + version = "1.8.0.2"; + sha256 = "40642d965caca8c18950f0812e88ae061aa670fc2b3a8bf70e95b74927f11095"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ base deepseq QuickCheck random tasty tasty-hunit tasty-quickcheck @@ -182964,8 +185621,8 @@ self: { ({ mkDerivation, async, base, time }: mkDerivation { pname = "tiny-scheduler"; - version = "0.1.4.2"; - sha256 = "aea6a3b9773e92cccfced04626ae9da51307b33a0b9374797c9aa84c9dd52e1f"; + version = "0.1.4.3"; + sha256 = "5cf6ffa6ffd8e3ab32a100201b55d859adf637f3f7efafb27180e7e9a2f86c11"; libraryHaskellDepends = [ async base time ]; homepage = "https://github.com/functor-soup/tiny-scheduler#readme"; description = "tiny no-brainer job scheduler"; @@ -183200,8 +185857,8 @@ self: { }: mkDerivation { pname = "tldr"; - version = "0.2.0"; - sha256 = "2abf1633a568f61c786ec3cfefeec3fa372b3e9d3301b9916516f6fbf0e6f69d"; + version = "0.2.2"; + sha256 = "74b583efddbdaf5bca481538e473bcbb84f575eeb5035e4411e610f747436f79"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -183228,8 +185885,8 @@ self: { pname = "tls"; version = "1.3.10"; sha256 = "9f057d0f40dda5ce8d0f0e0f2a06087be8007c41462c6cab19774538c35e0171"; - revision = "1"; - editedCabalFile = "34c1efff5206b28c0e67bbde8ea7d3428aafb572a623b832b08928d5bb72f9be"; + revision = "2"; + editedCabalFile = "30f94541fc229715b10e6752cc25671fba874a7564de8ff64df0ce64f427e39c"; libraryHaskellDepends = [ asn1-encoding asn1-types async base bytestring cereal cryptonite data-default-class memory mtl network transformers x509 x509-store @@ -183289,6 +185946,22 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "tmapchan" = callPackage + ({ mkDerivation, base, containers, hashable, stm + , unordered-containers + }: + mkDerivation { + pname = "tmapchan"; + version = "0.0.3"; + sha256 = "e86db4c2e6cdd373b0cbe91e01d2a223c95d5d36930f5a6c484c1586ae5011e0"; + libraryHaskellDepends = [ + base containers hashable stm unordered-containers + ]; + homepage = "https://github.com/athanclark/tmapchan#readme"; + description = "An insert-ordered multimap (indexed FIFO) which consumes values as you lookup"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "tmpl" = callPackage ({ mkDerivation, base, bytestring, directory, template, text }: mkDerivation { @@ -183400,6 +186073,17 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "todo" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "todo"; + version = "0.2.0.1"; + sha256 = "6f30aa83c4552714b609d765cb5f618b4c27d1d272d222f4ebfc8d68d7f45d5d"; + libraryHaskellDepends = [ base ]; + description = "A todo bottom"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "todos" = callPackage ({ mkDerivation, ansi-terminal, base, base-unicode-symbols , containers, data-hash, dates, directory, dyre, filepath, Glob @@ -183551,6 +186235,7 @@ self: { homepage = "http://www.polarmobile.com/"; description = "FFI bindings to libtokyotyrant"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) tokyocabinet; inherit (pkgs) tokyotyrant;}; "tomato-rubato-openal" = callPackage @@ -183582,6 +186267,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "toml-parser" = callPackage + ({ mkDerivation, alex, array, base, happy, text, time }: + mkDerivation { + pname = "toml-parser"; + version = "0.1.0.0"; + sha256 = "da81ecf51a9f814aef58d24f3ab95e46a57076a8eb3d2989c58ce204c0a0365c"; + libraryHaskellDepends = [ array base text time ]; + libraryToolDepends = [ alex happy ]; + homepage = "https://github.com/glguy/toml-parser"; + description = "Parser for the TOML configuration language"; + license = stdenv.lib.licenses.isc; + }) {}; + "toolshed" = callPackage ({ mkDerivation, array, base, containers, data-default, deepseq , directory, filepath, HUnit, QuickCheck, random @@ -184268,6 +186966,20 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "transformers-lift_0_2_0_1" = callPackage + ({ mkDerivation, base, transformers, writer-cps-transformers }: + mkDerivation { + pname = "transformers-lift"; + version = "0.2.0.1"; + sha256 = "0bd8bf23fb29874daf9ff990bf25035e21208cfa292f9f18e8cfdb0b4b1ee09d"; + libraryHaskellDepends = [ + base transformers writer-cps-transformers + ]; + description = "Ad-hoc type classes for lifting"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "transformers-runnable" = callPackage ({ mkDerivation, base, transformers }: mkDerivation { @@ -184443,6 +187155,21 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "traverse-with-class_1_0_0_0" = callPackage + ({ mkDerivation, base, tasty, tasty-hunit, template-haskell + , transformers + }: + mkDerivation { + pname = "traverse-with-class"; + version = "1.0.0.0"; + sha256 = "65a220f1652b68269dfe8cc283a6e9292941eb12bdbd79344e073ba766191fbb"; + libraryHaskellDepends = [ base template-haskell transformers ]; + testHaskellDepends = [ base tasty tasty-hunit ]; + description = "Generic applicative traversals"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "travis" = callPackage ({ mkDerivation, aeson, base, bytestring, http-conduit , transformers @@ -184774,6 +187501,26 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "triplesec" = callPackage + ({ mkDerivation, base, bytestring, cryptonite, doctest, memory, mtl + , QuickCheck, tasty, tasty-hunit, tasty-quickcheck, transformers + }: + mkDerivation { + pname = "triplesec"; + version = "0.1.2.0"; + sha256 = "86b8749e708fd288a874d23ebeb9ff5e3a584ada13bc22c3a9b596418bd57063"; + libraryHaskellDepends = [ + base cryptonite memory mtl transformers + ]; + testHaskellDepends = [ + base bytestring doctest memory QuickCheck tasty tasty-hunit + tasty-quickcheck + ]; + homepage = "https://github.com/SamProtas/hs-triplesec"; + description = "TripleSec is a simple, triple-paranoid, symmetric encryption library"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "trivia" = callPackage ({ mkDerivation, base, comonad, distributive }: mkDerivation { @@ -185110,30 +187857,6 @@ self: { }: mkDerivation { pname = "tttool"; - version = "1.7.0.1"; - sha256 = "b41fc9b2899a625a0a364dd8fc4ef8f7c070ec7cbcbf5ef2acfc256cfb434fe6"; - isLibrary = false; - isExecutable = true; - executableHaskellDepends = [ - aeson base binary bytestring containers directory executable-path - filepath hashable haskeline HPDF JuicyPixels mtl natural-sort - optparse-applicative parsec process random split spool - template-haskell time vector yaml zlib - ]; - homepage = "https://github.com/entropia/tip-toi-reveng"; - description = "Working with files for the Tiptoi® pen"; - license = stdenv.lib.licenses.mit; - }) {}; - - "tttool_1_7_0_2" = callPackage - ({ mkDerivation, aeson, base, binary, bytestring, containers - , directory, executable-path, filepath, hashable, haskeline, HPDF - , JuicyPixels, mtl, natural-sort, optparse-applicative, parsec - , process, random, split, spool, template-haskell, time, vector - , yaml, zlib - }: - mkDerivation { - pname = "tttool"; version = "1.7.0.2"; sha256 = "37100655b5a42ced12a9d144d07462f9a5fce440faac556a4c9fe64665d00322"; isLibrary = false; @@ -185147,7 +187870,6 @@ self: { homepage = "https://github.com/entropia/tip-toi-reveng"; description = "Working with files for the Tiptoi® pen"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "tubes" = callPackage @@ -185405,17 +188127,17 @@ self: { "turtle" = callPackage ({ mkDerivation, ansi-wl-pprint, async, base, bytestring, clock , criterion, directory, doctest, foldl, hostname, managed - , optional-args, optparse-applicative, process, stm, system-fileio - , system-filepath, temporary, text, time, transformers, unix - , unix-compat + , optional-args, optparse-applicative, process, semigroups, stm + , system-fileio, system-filepath, temporary, text, time + , transformers, unix, unix-compat }: mkDerivation { pname = "turtle"; - version = "1.3.2"; - sha256 = "f8163bcc08be06883964907391b88c2da0480f4764668629f4ada908319e7b5d"; + version = "1.3.3"; + sha256 = "82a16fd13f9ce3e80f031e5bf6881ef3230939c38f0e9ac57845850a96304d1e"; libraryHaskellDepends = [ ansi-wl-pprint async base bytestring clock directory foldl hostname - managed optional-args optparse-applicative process stm + managed optional-args optparse-applicative process semigroups stm system-fileio system-filepath temporary text time transformers unix unix-compat ]; @@ -185494,21 +188216,21 @@ self: { "tweet-hs" = callPackage ({ mkDerivation, aeson, ansi-wl-pprint, authenticate-oauth, base - , bytestring, composition, criterion, data-default, directory - , extra, hspec, hspec-megaparsec, http-client, http-client-tls - , http-types, lens, megaparsec, MissingH, optparse-applicative - , split, text + , bytestring, composition, containers, criterion, data-default + , directory, extra, hspec, hspec-megaparsec, http-client + , http-client-tls, http-types, lens, megaparsec + , optparse-applicative, split, text }: mkDerivation { pname = "tweet-hs"; - version = "0.5.3.6"; - sha256 = "f3f882d1431241e5c0368d4994f675c38e13a4caae95f044e660d472d3633395"; + version = "0.5.3.11"; + sha256 = "469c03bc6b8c7396c6c9d461d429ffafb15725e417819b5113b54124c760c893"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson ansi-wl-pprint authenticate-oauth base bytestring composition - data-default directory extra http-client http-client-tls http-types - lens megaparsec MissingH optparse-applicative split text + containers data-default directory extra http-client http-client-tls + http-types lens megaparsec optparse-applicative split text ]; executableHaskellDepends = [ base ]; testHaskellDepends = [ @@ -186293,6 +189015,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "type-indexed-queues" = callPackage + ({ mkDerivation, base, containers, criterion, deepseq, doctest + , ghc-typelits-natnormalise, pqueue, QuickCheck, random, tasty + , tasty-quickcheck + }: + mkDerivation { + pname = "type-indexed-queues"; + version = "0.2.0.0"; + sha256 = "e0c12c3453f4851ba10c10bd977aef850a520c707e2f14dbe018d9680fec65d5"; + libraryHaskellDepends = [ + base containers deepseq ghc-typelits-natnormalise + ]; + testHaskellDepends = [ + base containers doctest QuickCheck tasty tasty-quickcheck + ]; + benchmarkHaskellDepends = [ + base containers criterion pqueue random + ]; + homepage = "https://github.com/oisdk/type-indexed-queues"; + description = "Queues with verified and unverified versions"; + license = stdenv.lib.licenses.mit; + }) {}; + "type-int" = callPackage ({ mkDerivation, base, template-haskell }: mkDerivation { @@ -186921,20 +189666,22 @@ self: { }) {}; "typesafe-precure" = callPackage - ({ mkDerivation, base, dlist, hspec, monad-skeleton - , template-haskell + ({ mkDerivation, autoexporter, base, dlist, hspec, monad-skeleton + , template-haskell, th-data-compat }: mkDerivation { pname = "typesafe-precure"; - version = "0.2.0.0"; - sha256 = "f024a0c5a135b2ffbaf4ae97d9614d6f0d09652327061ba134f1c4b38e4b130e"; + version = "0.3.0.0"; + sha256 = "4292ba9a6e1c01602e2ebda1a239121d8cab3433205ca965e92c7f5ffd1281b2"; libraryHaskellDepends = [ - base dlist monad-skeleton template-haskell + autoexporter base dlist monad-skeleton template-haskell + th-data-compat ]; testHaskellDepends = [ base hspec ]; homepage = "https://github.com/igrep/typesafe-precure#readme"; description = "Type-safe transformations and purifications of PreCures (Japanese Battle Heroine)"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "typescript-docs" = callPackage @@ -187440,8 +190187,8 @@ self: { ({ mkDerivation, base, io-streams, unagi-chan }: mkDerivation { pname = "unagi-streams"; - version = "0.2.0"; - sha256 = "2a9fe32a18f9ab2211e03916956b34f341fa417e879dfd18a01f7eb907133c56"; + version = "0.2.2"; + sha256 = "8a94c07be7c005eee201e76d92e112d105fa3ca0f6978e3bbf8ac3460f0068ec"; libraryHaskellDepends = [ base io-streams unagi-chan ]; homepage = "https://github.com/LukeHoersten/unagi-streams"; description = "Unagi Chan IO-Streams"; @@ -187535,6 +190282,19 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "unbounded-delays_0_1_1_0" = callPackage + ({ mkDerivation, base }: + mkDerivation { + pname = "unbounded-delays"; + version = "0.1.1.0"; + sha256 = "8aa7f7d10a8d0073518804db76c3ef4c313359994ef175122341b0bce07329c7"; + libraryHaskellDepends = [ base ]; + homepage = "https://github.com/basvandijk/unbounded-delays"; + description = "Unbounded thread delays and timeouts"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "unbounded-delays-units" = callPackage ({ mkDerivation, base, unbounded-delays, units, units-defs }: mkDerivation { @@ -187561,6 +190321,18 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "unboxed-ref" = callPackage + ({ mkDerivation, base, ghc-prim, primitive }: + mkDerivation { + pname = "unboxed-ref"; + version = "0.3.0.0"; + sha256 = "f42553dafe4b24aa16ef88cb71fdf665c9eede522148473f05db2bea7c4dfc7f"; + libraryHaskellDepends = [ base ghc-prim primitive ]; + homepage = "https://github.com/winterland1989/unboxed-ref"; + description = "Fast unboxed references for ST and IO monad"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "unbreak" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring , bytestring, cereal, cmdargs, cryptonite, memory, process, text @@ -188580,8 +191352,8 @@ self: { }: mkDerivation { pname = "unjson"; - version = "0.14.1.2"; - sha256 = "8f06d68b66269385a34d59ee6b68de932e0f4ee9bfb76219d9a278260e0a9d4b"; + version = "0.14.1.3"; + sha256 = "43e2329f20d321abcd094e597a4ebb112491c5903051e53d12e448ec25a64ca1"; libraryHaskellDepends = [ aeson attoparsec base bytestring containers free hashable invariant pretty primitive scientific text time unordered-containers vector @@ -188840,8 +191612,8 @@ self: { }: mkDerivation { pname = "unused"; - version = "0.7.0.0"; - sha256 = "4eee152fd54f52f1c1ff7b12ff8fa78b0d2c84def118f7be2fa51a0c3d70c68b"; + version = "0.8.0.0"; + sha256 = "36ac9a0f84df09bc1ecef9af227bf865651bdaaab981d33dcbcdb701623c48af"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -189623,8 +192395,8 @@ self: { pname = "utf8-string"; version = "1.0.1.1"; sha256 = "fb0b9e3acbe0605bcd1c63e51f290a7bbbe6628dfa3294ff453e4235fbaef140"; - revision = "1"; - editedCabalFile = "a351111265dd7d3a76113c938d4d3b0b2ba5b17e071f77e5a29fc86e91ee8396"; + revision = "2"; + editedCabalFile = "19d60820611ed14041c63bd240958a652276b68d4ca3cf6042864a166fd227ad"; libraryHaskellDepends = [ base bytestring ]; homepage = "http://github.com/glguy/utf8-string/"; description = "Support for reading and writing UTF8 Strings"; @@ -190185,6 +192957,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "validated-types" = callPackage + ({ mkDerivation, base, refined, text }: + mkDerivation { + pname = "validated-types"; + version = "0.1.1"; + sha256 = "38ed6688064cd318be8bf942be6f1d6fee61fb9727cd58a5fe92454362583d17"; + libraryHaskellDepends = [ base refined text ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/seanhess/validated-types#readme"; + description = "Type-level constraints on strings and other input"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "validation" = callPackage ({ mkDerivation, base, bifunctors, directory, doctest, filepath , lens, mtl, QuickCheck, semigroupoids, semigroups @@ -190429,21 +193214,6 @@ self: { }: mkDerivation { pname = "vault"; - version = "0.3.0.6"; - sha256 = "0b433de60fa3d20e93dce6013293e18089fb3233c34211ffa3f860408866ef48"; - libraryHaskellDepends = [ - base containers hashable unordered-containers - ]; - homepage = "https://github.com/HeinrichApfelmus/vault"; - description = "a persistent store for values of arbitrary types"; - license = stdenv.lib.licenses.bsd3; - }) {}; - - "vault_0_3_0_7" = callPackage - ({ mkDerivation, base, containers, hashable, unordered-containers - }: - mkDerivation { - pname = "vault"; version = "0.3.0.7"; sha256 = "9e9189da0821d68fc8f85aab958bbec141635858a7aeb8178e1eec5872a366f0"; libraryHaskellDepends = [ @@ -190452,7 +193222,6 @@ self: { homepage = "https://github.com/HeinrichApfelmus/vault"; description = "a persistent store for values of arbitrary types"; license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "vault-tool" = callPackage @@ -191242,6 +194011,28 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "verify" = callPackage + ({ mkDerivation, aeson, base, base64-bytestring, containers, either + , hspec, jwt, QuickCheck, text, text-conversions, time + }: + mkDerivation { + pname = "verify"; + version = "0.0.0"; + sha256 = "ee7755061154b794fbf8ab60995bb3741313ef1137526e091a8ab357b33327e2"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base base64-bytestring containers either jwt text + text-conversions time + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ + base hspec jwt QuickCheck text text-conversions time + ]; + description = "A new Haskeleton package"; + license = stdenv.lib.licenses.isc; + }) {}; + "verilog" = callPackage ({ mkDerivation, alex, array, base, happy }: mkDerivation { @@ -193007,8 +195798,8 @@ self: { }: mkDerivation { pname = "wai-middleware-prometheus"; - version = "0.1.0.1"; - sha256 = "6da4cb9dd96912332050dd2abf6f489ef94aa856c409bd6205f706257bbe3037"; + version = "0.1.1"; + sha256 = "b292fb98dd159c6a50ad8f925f5f6fbf25faf91a31f3de26f174d9552d18a735"; libraryHaskellDepends = [ base bytestring data-default http-types prometheus-client text time wai @@ -193134,6 +195925,25 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "wai-middleware-static-embedded" = callPackage + ({ mkDerivation, base, bytestring, cryptonite, http-types, memory + , mime-types, text, wai, wai-extra + }: + mkDerivation { + pname = "wai-middleware-static-embedded"; + version = "0.1.0.0"; + sha256 = "de2c6a0a5174cec2f385080a734f0826aa6d1c4cd761f0c5df789eeb492816ad"; + revision = "1"; + editedCabalFile = "036b7823a5e69452d1fe1e270ef3d4988063caa5bb00b6dfc356e1c21b7433e3"; + libraryHaskellDepends = [ + base bytestring cryptonite http-types memory mime-types text wai + wai-extra + ]; + homepage = "https://github.com/adamse/wai-middleware-static-embedded#readme"; + description = "Serve embedded static files as a Wai middleware"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "wai-middleware-throttle" = callPackage ({ mkDerivation, base, bytestring, containers, hashable, hspec , http-types, HUnit, network, stm, token-bucket, transformers, wai @@ -193453,6 +196263,19 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "wai-slack-middleware" = callPackage + ({ mkDerivation, aeson, base, http-client, http-types, wai }: + mkDerivation { + pname = "wai-slack-middleware"; + version = "0.2.0"; + sha256 = "d14482f43147e16f05c7282f5b478e76a803dc7398d73dbf6cd2d9be83695750"; + libraryHaskellDepends = [ aeson base http-client http-types wai ]; + testHaskellDepends = [ base ]; + homepage = "https://github.com/psibi/wai-slack-middleware#readme"; + description = "A Slack middleware for WAI"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "wai-static-cache" = callPackage ({ mkDerivation, base, bytestring, cityhash, conduit , conduit-combinators, containers, http-types, resourcet @@ -193642,6 +196465,37 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "waldo" = callPackage + ({ mkDerivation, aeson, aeson-pretty, attoparsec, base + , blaze-builder, browscap, bytestring, case-insensitive, conduit + , conduit-extra, deepseq, directory, filepath, Geodetic, Glob + , hs-GeoIP, http-types, imagesize-conduit, lrucache, mtl, network + , network-uri, regex-tdfa, resourcet, safe, SHA, text + , unordered-containers, wai, wai-app-static, wai-extra, warp + , zlib-conduit + }: + mkDerivation { + pname = "waldo"; + version = "0"; + sha256 = "5847d052475f0c093322cbf4145c72b2e722b3f2bc9b0d5cbf7e68bc87c71464"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson aeson-pretty attoparsec base blaze-builder browscap + bytestring case-insensitive conduit conduit-extra deepseq directory + filepath Geodetic Glob hs-GeoIP http-types imagesize-conduit + lrucache mtl network network-uri regex-tdfa resourcet safe SHA text + unordered-containers wai warp zlib-conduit + ]; + executableHaskellDepends = [ + aeson base bytestring conduit conduit-extra deepseq http-types mtl + resourcet safe unordered-containers wai wai-app-static wai-extra + warp zlib-conduit + ]; + description = "A generator of comics based on some ascertainable data about the requester"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "warc" = callPackage ({ mkDerivation, attoparsec, base, bytestring, errors, exceptions , filepath, free, lens, mmorph, optparse-applicative, pipes @@ -193707,6 +196561,43 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "warp_3_2_12" = callPackage + ({ mkDerivation, array, async, auto-update, base, blaze-builder + , bytestring, bytestring-builder, case-insensitive, containers + , criterion, directory, doctest, ghc-prim, hashable, hspec, HTTP + , http-date, http-types, http2, HUnit, iproute, lifted-base + , network, process, QuickCheck, silently, simple-sendfile, stm + , streaming-commons, text, time, transformers, unix, unix-compat + , vault, wai, word8 + }: + mkDerivation { + pname = "warp"; + version = "3.2.12"; + sha256 = "e33ce7e223e9438073bb02d91a5d86c2f9689e75ce172b0311124851a083a711"; + libraryHaskellDepends = [ + array async auto-update base blaze-builder bytestring + bytestring-builder case-insensitive containers ghc-prim hashable + http-date http-types http2 iproute network simple-sendfile stm + streaming-commons text unix unix-compat vault wai word8 + ]; + testHaskellDepends = [ + array async auto-update base blaze-builder bytestring + bytestring-builder case-insensitive containers directory doctest + ghc-prim hashable hspec HTTP http-date http-types http2 HUnit + iproute lifted-base network process QuickCheck silently + simple-sendfile stm streaming-commons text time transformers unix + unix-compat vault wai word8 + ]; + benchmarkHaskellDepends = [ + auto-update base bytestring containers criterion hashable http-date + http-types network unix unix-compat + ]; + homepage = "http://github.com/yesodweb/wai"; + description = "A fast, light-weight web server for WAI applications"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "warp-dynamic" = callPackage ({ mkDerivation, base, data-default, dyre, http-types, wai, warp }: mkDerivation { @@ -194100,6 +196991,7 @@ self: { homepage = "https://github.com/danse/web-output"; description = "Library to present content to an user via their browser"; license = stdenv.lib.licenses.publicDomain; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "web-page" = callPackage @@ -194480,31 +197372,6 @@ self: { }: mkDerivation { pname = "webdriver"; - version = "0.8.4"; - sha256 = "347f2935e7b9498d1a0391f929b347e295fa8b19a3ea0ac7b81802fda4164f23"; - libraryHaskellDepends = [ - aeson attoparsec base base64-bytestring bytestring - data-default-class directory directory-tree exceptions filepath - http-client http-types lifted-base monad-control network - network-uri scientific temporary text time transformers - transformers-base unordered-containers vector zip-archive - ]; - homepage = "https://github.com/kallisti-dev/hs-webdriver"; - description = "a Haskell client for the Selenium WebDriver protocol"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - - "webdriver_0_8_5" = callPackage - ({ mkDerivation, aeson, attoparsec, base, base64-bytestring - , bytestring, data-default-class, directory, directory-tree - , exceptions, filepath, http-client, http-types, lifted-base - , monad-control, network, network-uri, scientific, temporary, text - , time, transformers, transformers-base, unordered-containers - , vector, zip-archive - }: - mkDerivation { - pname = "webdriver"; version = "0.8.5"; sha256 = "a8167a8b147411a929e81727a77bc31fcd7d93424442268913fb522e1932c1be"; libraryHaskellDepends = [ @@ -194771,35 +197638,6 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "websockets_0_9_8_2" = callPackage - ({ mkDerivation, attoparsec, base, base64-bytestring, binary - , blaze-builder, bytestring, case-insensitive, containers, entropy - , HUnit, network, QuickCheck, random, SHA, test-framework - , test-framework-hunit, test-framework-quickcheck2, text - }: - mkDerivation { - pname = "websockets"; - version = "0.9.8.2"; - sha256 = "09ec17dfbf9f07da27575ce7853b0c80d87ad959c2b271f27be4c4e54615eca2"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - attoparsec base base64-bytestring binary blaze-builder bytestring - case-insensitive containers entropy network random SHA text - ]; - testHaskellDepends = [ - attoparsec base base64-bytestring binary blaze-builder bytestring - case-insensitive containers entropy HUnit network QuickCheck random - SHA test-framework test-framework-hunit test-framework-quickcheck2 - text - ]; - doCheck = false; - homepage = "http://jaspervdj.be/websockets"; - description = "A sensible and clean way to write WebSocket-capable servers in Haskell"; - license = stdenv.lib.licenses.bsd3; - hydraPlatforms = stdenv.lib.platforms.none; - }) {}; - "websockets" = callPackage ({ mkDerivation, attoparsec, base, base64-bytestring, binary , blaze-builder, bytestring, case-insensitive, containers, entropy @@ -194884,14 +197722,60 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "websockets-rpc_0_6_0" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, containers + , exceptions, hashable, monad-control, mtl, QuickCheck + , quickcheck-instances, stm, tasty, tasty-quickcheck, text + , transformers, unordered-containers, uuid, wai-transformers + , websockets, websockets-simple + }: + mkDerivation { + pname = "websockets-rpc"; + version = "0.6.0"; + sha256 = "efcd5b6d39506fc591863d10d2e179603a004f7730bc1424920c69d7412b31ce"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson async base bytestring containers exceptions hashable + monad-control mtl QuickCheck stm text transformers + unordered-containers uuid wai-transformers websockets + websockets-simple + ]; + testHaskellDepends = [ + aeson base QuickCheck quickcheck-instances tasty tasty-quickcheck + ]; + description = "Simple streaming RPC mechanism using WebSockets"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + + "websockets-simple" = callPackage + ({ mkDerivation, aeson, async, base, bytestring, every, exceptions + , hspec, monad-control, stm, tasty, tasty-hspec, wai-transformers + , websockets + }: + mkDerivation { + pname = "websockets-simple"; + version = "0.0.6"; + sha256 = "dc1cc1b45c86f6448ff8b1749b6916f32cc2deef547389c27bbd55f5395798f8"; + libraryHaskellDepends = [ + aeson async base bytestring every exceptions monad-control stm + wai-transformers websockets + ]; + testHaskellDepends = [ base hspec stm tasty tasty-hspec ]; + homepage = "https://github.com/athanclark/websockets-simple#readme"; + description = "Simpler interface to the websockets api"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "websockets-snap" = callPackage ({ mkDerivation, base, bytestring, bytestring-builder, io-streams , mtl, snap-core, snap-server, websockets }: mkDerivation { pname = "websockets-snap"; - version = "0.10.2.0"; - sha256 = "294173c3dbc327ce3873ff310dcd14590d6a1ec05d54ea8d1a0cda0498dbe4a2"; + version = "0.10.2.1"; + sha256 = "4264992c29f800b9623632fc366094ebbfe6353fb0e346f0a51519afed3586af"; libraryHaskellDepends = [ base bytestring bytestring-builder io-streams mtl snap-core snap-server websockets @@ -194901,14 +197785,14 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "websockets-snap_0_10_2_1" = callPackage + "websockets-snap_0_10_2_2" = callPackage ({ mkDerivation, base, bytestring, bytestring-builder, io-streams , mtl, snap-core, snap-server, websockets }: mkDerivation { pname = "websockets-snap"; - version = "0.10.2.1"; - sha256 = "4264992c29f800b9623632fc366094ebbfe6353fb0e346f0a51519afed3586af"; + version = "0.10.2.2"; + sha256 = "bcc3bbb7117a7ced50f83b6ddc31aeb9a1a4df6d1ce0d95662c45a3c577678d8"; libraryHaskellDepends = [ base bytestring bytestring-builder io-streams mtl snap-core snap-server websockets @@ -194972,16 +197856,35 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "weeder" = callPackage + ({ mkDerivation, aeson, base, bytestring, cmdargs, extra, filepath + , hashable, process, text, unordered-containers, vector, yaml + }: + mkDerivation { + pname = "weeder"; + version = "0.1.3"; + sha256 = "b21986454d348b830b5f438ea82ac2f656cb99fcb9dd1739087aa56595577897"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + aeson base bytestring cmdargs extra filepath hashable process text + unordered-containers vector yaml + ]; + homepage = "https://github.com/ndmitchell/weeder#readme"; + description = "Detect dead code"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "weigh" = callPackage ({ mkDerivation, base, deepseq, mtl, process, split - , template-haskell + , template-haskell, temporary }: mkDerivation { pname = "weigh"; - version = "0.0.3"; - sha256 = "396853c0e8347c7c13ec013259dc2a2c91663aa3f3e7f8bc9fa588f41d0af86a"; + version = "0.0.4"; + sha256 = "2b360ce341a1401be48966648ccaf531f670d23458d557c5ae9c7ca4061cece3"; libraryHaskellDepends = [ - base deepseq mtl process split template-haskell + base deepseq mtl process split template-haskell temporary ]; testHaskellDepends = [ base deepseq ]; homepage = "https://github.com/fpco/weigh#readme"; @@ -195867,8 +198770,8 @@ self: { }: mkDerivation { pname = "wolf"; - version = "0.3.13"; - sha256 = "e96203096f770c4241d1ac2e0b8163b6af551c32eb57950a5223f9f1c2327283"; + version = "0.3.14"; + sha256 = "623814f3bd9dea11daa3c165578f6edcaadbab33566e23127a8acb94369873b5"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -195956,6 +198859,29 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "wordchoice" = callPackage + ({ mkDerivation, base, bytestring, Chart, Chart-diagrams + , containers, criterion, Glob, lens, optparse-applicative, pandoc + , system-filepath, text + }: + mkDerivation { + pname = "wordchoice"; + version = "0.1.0.4"; + sha256 = "e70c2ed440fc6c0789cce99109349ae6d18311e35f63dbaa219163128295fbcc"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring Chart Chart-diagrams containers Glob lens + optparse-applicative pandoc system-filepath text + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + benchmarkHaskellDepends = [ base criterion ]; + homepage = "https://github.com/githubuser/wordchoice#readme"; + description = "Get word counts and distributions"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "wordcloud" = callPackage ({ mkDerivation }: mkDerivation { @@ -196061,6 +198987,29 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "workflow-extra" = callPackage + ({ mkDerivation, base, bytestring, criterion, deepseq, doctest + , Earley, exceptions, free, hspec, http-types, QuickCheck + , transformers, workflow-types + }: + mkDerivation { + pname = "workflow-extra"; + version = "0.0.1"; + sha256 = "d5ac0573392e0ee4a125b36a98fed44d2744835934585024bc5cfee4bb51b16f"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring Earley exceptions free http-types transformers + workflow-types + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest hspec QuickCheck ]; + benchmarkHaskellDepends = [ base criterion deepseq ]; + homepage = "http://github.com/sboosali/workflow-extra#readme"; + description = "Utilities (e.g. Googling the clipboard contents) for the `workflow` pacakge"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "workflow-osx" = callPackage ({ mkDerivation, base, bv, bytestring, exceptions, filepath, free , http-types, mtl, transformers @@ -196082,19 +199031,41 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "workflow-pure" = callPackage + ({ mkDerivation, base, criterion, deepseq, doctest, exceptions + , free, hspec, mtl, QuickCheck, semigroups, transformers + , workflow-types + }: + mkDerivation { + pname = "workflow-pure"; + version = "0.0.1"; + sha256 = "9f6749231edd241d17d933e4d2a2a84b273f1f6ce618f9e6f83e86321382f2d4"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base deepseq exceptions free mtl semigroups transformers + workflow-types + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base doctest hspec QuickCheck ]; + benchmarkHaskellDepends = [ base criterion deepseq ]; + homepage = "http://github.com/sboosali/workflow-pure#readme"; + description = "manipulate `workflow-types:Workflow`'s"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "workflow-types" = callPackage - ({ mkDerivation, base, comonad, containers, deepseq, Earley - , exceptions, free, hashable, semigroups, split, transformers + ({ mkDerivation, base, containers, exceptions, free, spiros, split + , text, transformers }: mkDerivation { pname = "workflow-types"; - version = "0.0.0"; - sha256 = "54991eaf641bdf43e0d3e99bee650fa6ae2690adeb34d0f6378b5a0d93aaafa7"; + version = "0.0.1"; + sha256 = "c20e58f943f6e606def792a90dedba8bf590c001ef4ed6e2705507ee3b5e8c20"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - base comonad containers deepseq Earley exceptions free hashable - semigroups split transformers + base containers exceptions free spiros split text transformers ]; executableHaskellDepends = [ base ]; homepage = "http://github.com/sboosali/workflow-types#readme"; @@ -196398,8 +199369,8 @@ self: { }: mkDerivation { pname = "writer-cps-mtl"; - version = "0.1.1.3"; - sha256 = "b7a37f1e3183fdbd381149dbf3e55e727e7af19fef9136b0201df2600691a7f3"; + version = "0.1.1.4"; + sha256 = "62a3b3b76a5dc0dc6e8b9837afc8c5fc83fb334a034f89fab6a4a544fe204870"; libraryHaskellDepends = [ base mtl transformers writer-cps-transformers ]; @@ -196412,8 +199383,8 @@ self: { ({ mkDerivation, base, transformers }: mkDerivation { pname = "writer-cps-transformers"; - version = "0.1.1.2"; - sha256 = "3c82d9a2157da42229b9f7eaa476d26ce9ce2f3910efe8afc603e07fa4da348a"; + version = "0.1.1.3"; + sha256 = "8aa22832fdb413c706a6862b83ad4a4ef8dd61ae8658aca6e5076cf2a5cd4aae"; libraryHaskellDepends = [ base transformers ]; homepage = "https://github.com/minad/writer-cps-transformers#readme"; description = "WriteT and RWST monad transformers"; @@ -196597,21 +199568,6 @@ self: { }: mkDerivation { pname = "wuss"; - version = "1.1.3"; - sha256 = "691f03173df3b9af98760f27597318e3d028bef2d65ed58ea9e1fabf11bec8b0"; - libraryHaskellDepends = [ - base bytestring connection network websockets - ]; - homepage = "https://github.com/tfausak/wuss#readme"; - description = "Secure WebSocket (WSS) clients"; - license = stdenv.lib.licenses.mit; - }) {}; - - "wuss_1_1_4" = callPackage - ({ mkDerivation, base, bytestring, connection, network, websockets - }: - mkDerivation { - pname = "wuss"; version = "1.1.4"; sha256 = "75361b9f91752c050b271d6362a2f586d394e1d7d7f6a8d27d53bfb2945dfd5b"; libraryHaskellDepends = [ @@ -196620,15 +199576,14 @@ self: { homepage = "https://github.com/tfausak/wuss#readme"; description = "Secure WebSocket (WSS) clients"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "wx" = callPackage ({ mkDerivation, base, stm, time, wxcore }: mkDerivation { pname = "wx"; - version = "0.92.2.0"; - sha256 = "a1d02b17cd336f0c435381c9f2ce74aad2059c56a00c678954089b74065a97fb"; + version = "0.92.3.0"; + sha256 = "bdcbabeb1841c61d0fee5ac5c797ee9b825edf97028990c9bd1101855ee28c11"; libraryHaskellDepends = [ base stm time wxcore ]; homepage = "https://wiki.haskell.org/WxHaskell"; description = "wxHaskell"; @@ -196685,10 +199640,8 @@ self: { }: mkDerivation { pname = "wxc"; - version = "0.92.2.0"; - sha256 = "e0da20807bafb22d51a0922211da11eb428b2a6661cb53bc98f6e17be9775191"; - revision = "1"; - editedCabalFile = "8ebef4ae5773d0abcb5777dd1f8b9fbf978b6c7ed8b1d88bbcb25594db0c79c2"; + version = "0.92.3.0"; + sha256 = "28a27fc51a53b8d2f3042a516fe9b8adfd118675adcdf1a7cf1f9fe2b722ff44"; setupHaskellDepends = [ base bytestring Cabal directory filepath process split ]; @@ -196696,7 +199649,7 @@ self: { librarySystemDepends = [ libX11 mesa ]; libraryPkgconfigDepends = [ wxGTK ]; doHaddock = false; - postInstall = "cp -v dist/build/libwxc.so.0.92.2.0 $out/lib/libwxc.so"; + postInstall = "cp -v dist/build/libwxc.so.0.92.3.0 $out/lib/libwxc.so"; postPatch = "sed -i -e '/ldconfig inst_lib_dir/d' Setup.hs"; homepage = "https://wiki.haskell.org/WxHaskell"; description = "wxHaskell C++ wrapper"; @@ -196706,13 +199659,15 @@ self: { inherit (pkgs) wxGTK;}; "wxcore" = callPackage - ({ mkDerivation, array, base, bytestring, containers, directory - , filepath, parsec, stm, time, wxc, wxdirect, wxGTK + ({ mkDerivation, array, base, bytestring, Cabal, containers + , directory, filepath, parsec, process, stm, time, wxc, wxdirect + , wxGTK }: mkDerivation { pname = "wxcore"; - version = "0.92.2.0"; - sha256 = "76128916c5d5df9cea9fc1e1b3b56d800d87874a431e98fca4427cb41cfe283e"; + version = "0.92.3.0"; + sha256 = "e053e1e9fc44f7ae2837c09c07bc1073255950d761643ec15a4a9f19557195e4"; + setupHaskellDepends = [ base Cabal directory filepath process ]; libraryHaskellDepends = [ array base bytestring containers directory filepath parsec stm time wxc wxdirect @@ -196730,10 +199685,8 @@ self: { }: mkDerivation { pname = "wxdirect"; - version = "0.92.2.0"; - sha256 = "2303834061c544f7e32ffd7aaf91e644ee89e178487689f109f06625f0eefd3b"; - revision = "1"; - editedCabalFile = "72b1487d63c458854733436e6938a76b709cb5392f155dad8ece7aafb73979a7"; + version = "0.92.3.0"; + sha256 = "03c60f604347dcfb1fb8cf65b4d0a487b5c2c868e4896f03ce5edd12d81e367a"; isLibrary = true; isExecutable = true; executableHaskellDepends = [ @@ -196966,8 +199919,8 @@ self: { }: mkDerivation { pname = "x86-64bit"; - version = "0.4.4"; - sha256 = "4deca451bb872b0ea29851e51c04d88af735dff454e9df38d3dc998c531bc9e2"; + version = "0.4.5"; + sha256 = "979d1ae996faac30b5f7e03fe5c6bb4c55f6905d714bf799cba81e95fb28f4b5"; libraryHaskellDepends = [ base deepseq monads-tf QuickCheck tardis vector ]; @@ -196996,6 +199949,7 @@ self: { ]; description = "Haskell extended file attributes interface"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs) attr;}; "xbattbar" = callPackage @@ -197099,6 +200053,8 @@ self: { pname = "xdcc"; version = "1.1.4"; sha256 = "a9c4f4c904bb6d4c634b224eb0587babc60cbee51a9d7ed6a487f138df266464"; + revision = "1"; + editedCabalFile = "adf70fcc1a9a57f95976fd6a6b38671e939fb02b8c6f1a73740687e02d27e27e"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -197181,6 +200137,28 @@ self: { license = stdenv.lib.licenses.bsd3; }) {}; + "xeno_0_2" = callPackage + ({ mkDerivation, array, base, bytestring, criterion, deepseq + , ghc-prim, hexml, hexpat, hspec, mtl, mutable-containers, vector + , weigh, xml + }: + mkDerivation { + pname = "xeno"; + version = "0.2"; + sha256 = "af56361848089becb1db47e236014568aebc5cb053fe6e1637523eedc307cd26"; + libraryHaskellDepends = [ + array base bytestring deepseq mtl mutable-containers vector + ]; + testHaskellDepends = [ base bytestring hexml hspec ]; + benchmarkHaskellDepends = [ + base bytestring criterion deepseq ghc-prim hexml hexpat weigh xml + ]; + homepage = "https://github.com/ocramz/xeno"; + description = "A fast event-based XML parser in pure Haskell"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "xenstore" = callPackage ({ mkDerivation, base, bytestring, cereal, mtl, network }: mkDerivation { @@ -197811,10 +200789,8 @@ self: { }: mkDerivation { pname = "xml-html-conduit-lens"; - version = "0.3.2.2"; - sha256 = "bf2b242411168e2287d2189e8c74c4c3751afac03003a852ee6068ce7cc643ac"; - revision = "1"; - editedCabalFile = "4673f03cf274523d25c1b07e4fddd6b1729e42a372ef7e1967705b808eda52a8"; + version = "0.3.2.3"; + sha256 = "2bb210fb0b3282e3640875d8b9506ce9437db275c7b2a257e3c03eccd1a75ae4"; libraryHaskellDepends = [ base bytestring containers html-conduit lens text xml-conduit ]; @@ -198233,8 +201209,8 @@ self: { pname = "xmlhtml"; version = "0.2.3.5"; sha256 = "e333a1c7afd5068b60b143457fea7325a34408cc65b3ac55f5b342eb0274b06d"; - revision = "3"; - editedCabalFile = "4b5e2c334e6fdcab94095ca5fa805a2353690d3a616733cec0febf2ba2991880"; + revision = "4"; + editedCabalFile = "e2c3c5234105ee96cb3292edf8769290b5689767fcd32517404b7e562b4a6a1c"; libraryHaskellDepends = [ base blaze-builder blaze-html blaze-markup bytestring containers parsec text unordered-containers @@ -198312,8 +201288,8 @@ self: { }: mkDerivation { pname = "xmobar"; - version = "0.24.3"; - sha256 = "d330079dd60e22004a4cfa271eb9e00a1bb36b8dafcbbf1b1a5980d401dcf510"; + version = "0.24.4"; + sha256 = "054e21bc4b5b55c096342b6b5071f66443b663a325068a2733bb69d5d362b5c8"; configureFlags = [ "-fall_extensions" ]; isLibrary = false; isExecutable = true; @@ -198329,6 +201305,7 @@ self: { homepage = "http://xmobar.org"; description = "A Minimalistic Text Based Status Bar"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = [ "x86_64-darwin" ]; }) {inherit (pkgs.xorg) libXpm; inherit (pkgs.xorg) libXrandr; inherit (pkgs.xorg) libXrender; inherit (pkgs) wirelesstools;}; @@ -199075,6 +202052,38 @@ self: { license = stdenv.lib.licenses.bsd3; }) {inherit (pkgs) libyaml;}; + "yaml_0_8_22_1" = callPackage + ({ mkDerivation, aeson, aeson-qq, attoparsec, base, base-compat + , bytestring, conduit, containers, directory, filepath, hspec + , HUnit, libyaml, mockery, resourcet, scientific, semigroups + , template-haskell, temporary, text, transformers + , unordered-containers, vector + }: + mkDerivation { + pname = "yaml"; + version = "0.8.22.1"; + sha256 = "dd6c0ae5a641e7fbd1fd9b157a6c1bb9cac2db4701eaef6acbbbf6f41a807b6b"; + configureFlags = [ "-fsystem-libyaml" ]; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson attoparsec base bytestring conduit containers directory + filepath resourcet scientific semigroups template-haskell text + transformers unordered-containers vector + ]; + libraryPkgconfigDepends = [ libyaml ]; + executableHaskellDepends = [ aeson base bytestring ]; + testHaskellDepends = [ + aeson aeson-qq base base-compat bytestring conduit directory hspec + HUnit mockery resourcet temporary text transformers + unordered-containers vector + ]; + homepage = "http://github.com/snoyberg/yaml/"; + description = "Support for parsing and rendering YAML documents"; + license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; + }) {inherit (pkgs) libyaml;}; + "yaml-combinators" = callPackage ({ mkDerivation, aeson, base, bytestring, doctest, generics-sop , scientific, tasty, tasty-hunit, text, transformers @@ -199636,6 +202645,7 @@ self: { homepage = "https://github.com/matthew-eads/yesod-articles"; description = "Automatically generate article previews for a yesod site"; license = stdenv.lib.licenses.bsd3; + hydraPlatforms = stdenv.lib.platforms.none; }) {}; "yesod-auth" = callPackage @@ -199669,6 +202679,36 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "yesod-auth_1_4_17_1" = callPackage + ({ mkDerivation, aeson, authenticate, base, base16-bytestring + , base64-bytestring, binary, blaze-builder, blaze-html + , blaze-markup, byteable, bytestring, conduit, conduit-extra + , containers, cryptohash, data-default, email-validate, file-embed + , http-client, http-conduit, http-types, lifted-base, mime-mail + , network-uri, nonce, persistent, persistent-template, random + , resourcet, safe, shakespeare, template-haskell, text, time + , transformers, unordered-containers, wai, yesod-core, yesod-form + , yesod-persistent + }: + mkDerivation { + pname = "yesod-auth"; + version = "1.4.17.1"; + sha256 = "f8787f7aa8550b7b60f0fbf8798a0be644a06fb3b8a47d1aa06bdccecfe43535"; + libraryHaskellDepends = [ + aeson authenticate base base16-bytestring base64-bytestring binary + blaze-builder blaze-html blaze-markup byteable bytestring conduit + conduit-extra containers cryptohash data-default email-validate + file-embed http-client http-conduit http-types lifted-base + mime-mail network-uri nonce persistent persistent-template random + resourcet safe shakespeare template-haskell text time transformers + unordered-containers wai yesod-core yesod-form yesod-persistent + ]; + homepage = "http://www.yesodweb.com/"; + description = "Authentication for Yesod"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yesod-auth-account" = callPackage ({ mkDerivation, base, blaze-html, bytestring, hspec, monad-logger , mtl, nonce, persistent, persistent-sqlite, pwstore-fast @@ -199783,8 +202823,8 @@ self: { }: mkDerivation { pname = "yesod-auth-fb"; - version = "1.8.0"; - sha256 = "96d4aa8b901becac64eeb92593fe0531b76df1376cef5f2e3f1e2484dbb96588"; + version = "1.8.1"; + sha256 = "efb7196b4e8d1df83cde8913a3d139661441010aea426176e3820f1843a2fb78"; libraryHaskellDepends = [ aeson base bytestring conduit fb http-conduit lifted-base shakespeare text time transformers wai yesod-auth yesod-core @@ -199805,8 +202845,8 @@ self: { }: mkDerivation { pname = "yesod-auth-hashdb"; - version = "1.6.0.1"; - sha256 = "8fe73fb7e4301e02e69cac312227078fd01927c8a006224f7e3fd8a93aa9cb75"; + version = "1.6.1"; + sha256 = "694405dea4e644acb74d6ad4ec8806d0f4b3779c5b36a430ebcf111542d35af8"; libraryHaskellDepends = [ aeson base bytestring persistent pwstore-fast text yesod-auth yesod-core yesod-form yesod-persistent @@ -199823,31 +202863,21 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; - "yesod-auth-hashdb_1_6_1" = callPackage - ({ mkDerivation, aeson, base, basic-prelude, bytestring, containers - , hspec, http-conduit, http-types, monad-logger, network-uri - , persistent, persistent-sqlite, pwstore-fast, resourcet, text - , unordered-containers, wai-extra, yesod, yesod-auth, yesod-core - , yesod-form, yesod-persistent, yesod-test + "yesod-auth-hmac-keccak" = callPackage + ({ mkDerivation, aeson, base, bytestring, cryptonite, mtl + , persistent, random, shakespeare, text, yesod-auth, yesod-core + , yesod-form, yesod-persistent, yesod-static }: mkDerivation { - pname = "yesod-auth-hashdb"; - version = "1.6.1"; - sha256 = "694405dea4e644acb74d6ad4ec8806d0f4b3779c5b36a430ebcf111542d35af8"; + pname = "yesod-auth-hmac-keccak"; + version = "0.0.0.2"; + sha256 = "46799684d4c75dba07f46842ed594385c872fd5a37557b38a9d4f09e3237bb00"; libraryHaskellDepends = [ - aeson base bytestring persistent pwstore-fast text yesod-auth - yesod-core yesod-form yesod-persistent - ]; - testHaskellDepends = [ - aeson base basic-prelude bytestring containers hspec http-conduit - http-types monad-logger network-uri persistent-sqlite resourcet - text unordered-containers wai-extra yesod yesod-auth yesod-core - yesod-test + aeson base bytestring cryptonite mtl persistent random shakespeare + text yesod-auth yesod-core yesod-form yesod-persistent yesod-static ]; - homepage = "https://github.com/paul-rouse/yesod-auth-hashdb"; - description = "Authentication plugin for Yesod"; + description = "An account authentication plugin for yesod with encrypted token transfer"; license = stdenv.lib.licenses.mit; - hydraPlatforms = stdenv.lib.platforms.none; }) {}; "yesod-auth-kerberos" = callPackage @@ -200068,6 +203098,41 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "yesod-bin_1_5_2_3" = callPackage + ({ mkDerivation, async, attoparsec, base, base64-bytestring + , blaze-builder, bytestring, Cabal, conduit, conduit-extra + , containers, data-default-class, deepseq, directory, file-embed + , filepath, fsnotify, http-client, http-client-tls + , http-reverse-proxy, http-types, lifted-base, network + , optparse-applicative, parsec, process, project-template + , resourcet, safe-exceptions, say, shakespeare, split, stm + , streaming-commons, tar, template-haskell, text, time + , transformers, transformers-compat, typed-process, unix-compat + , unordered-containers, wai, wai-extra, warp, warp-tls, yaml, zlib + }: + mkDerivation { + pname = "yesod-bin"; + version = "1.5.2.3"; + sha256 = "eeabc3579d7834c6fc0890c5bdf27c52f84cc2bd3b44b4153f4a9320d3d123f6"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + async attoparsec base base64-bytestring blaze-builder bytestring + Cabal conduit conduit-extra containers data-default-class deepseq + directory file-embed filepath fsnotify http-client http-client-tls + http-reverse-proxy http-types lifted-base network + optparse-applicative parsec process project-template resourcet + safe-exceptions say shakespeare split stm streaming-commons tar + template-haskell text time transformers transformers-compat + typed-process unix-compat unordered-containers wai wai-extra warp + warp-tls yaml zlib + ]; + homepage = "http://www.yesodweb.com/"; + description = "The yesod helper executable"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yesod-bootstrap" = callPackage ({ mkDerivation, base, blaze-html, blaze-markup, bootstrap-types , shakespeare, text, transformers, yesod-core, yesod-elements @@ -200388,6 +203453,27 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {inherit (pkgs) sqlite;}; + "yesod-fast-devel" = callPackage + ({ mkDerivation, ansi-terminal, base, bytestring, directory + , filepath, fsnotify, Glob, optparse-applicative, process, pureMD5 + , stm, system-filepath, temporary, text + }: + mkDerivation { + pname = "yesod-fast-devel"; + version = "0.1.2.0"; + sha256 = "49ec1ffbcf03f8d61595a218bd1c7835f67f1feccc07cbe03b91bf6a68f1a6fc"; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + ansi-terminal base bytestring directory filepath fsnotify Glob + optparse-applicative process pureMD5 stm system-filepath temporary + text + ]; + homepage = "https://github.com/haskellbr/yesod-fast-devel#readme"; + description = "Fast live-reloading for yesod applications"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "yesod-fay" = callPackage ({ mkDerivation, aeson, base, bytestring, data-default, directory , fay, fay-dom, filepath, monad-loops, process, pureMD5 @@ -200450,6 +203536,31 @@ self: { license = stdenv.lib.licenses.mit; }) {}; + "yesod-form_1_4_12" = callPackage + ({ mkDerivation, aeson, attoparsec, base, blaze-builder, blaze-html + , blaze-markup, byteable, bytestring, containers, data-default + , email-validate, hspec, network-uri, persistent, resourcet + , semigroups, shakespeare, template-haskell, text, time + , transformers, wai, xss-sanitize, yesod-core, yesod-persistent + }: + mkDerivation { + pname = "yesod-form"; + version = "1.4.12"; + sha256 = "731638c1541b112f78ffeef05e11a57f518b6a6a15aa306779f6840e989b8a51"; + libraryHaskellDepends = [ + aeson attoparsec base blaze-builder blaze-html blaze-markup + byteable bytestring containers data-default email-validate + network-uri persistent resourcet semigroups shakespeare + template-haskell text time transformers wai xss-sanitize yesod-core + yesod-persistent + ]; + testHaskellDepends = [ base hspec text time ]; + homepage = "http://www.yesodweb.com/"; + description = "Form handling support for Yesod Web Framework"; + license = stdenv.lib.licenses.mit; + hydraPlatforms = stdenv.lib.platforms.none; + }) {}; + "yesod-form-json" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, text , unordered-containers, yesod-core, yesod-form @@ -200559,8 +203670,8 @@ self: { }: mkDerivation { pname = "yesod-job-queue"; - version = "0.3.0.1"; - sha256 = "a58805e218e5b0e6c623a5447f06484004d72a357f4b2e30d476da56618b734f"; + version = "0.3.0.3"; + sha256 = "a05d00b43d6eadbb0326850487a37a2a260607620a626a735d1e6854dafcb3d7"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -202526,10 +205637,8 @@ self: { }: mkDerivation { pname = "zifter"; - version = "0.0.1.1"; - sha256 = "ea8c1a721789144ae7207474a91f0471d17c42aa5a8e6962eca93c41b189de45"; - revision = "1"; - editedCabalFile = "38d76a58f2a44cbef3d535592d54e082011fb7ee539c1a659d4a58d5bbc961a1"; + version = "0.0.1.2"; + sha256 = "1e5b9db56c5d97af5ae540059377b1da924f9fb9724c644991987d2dd9f72c7b"; libraryHaskellDepends = [ ansi-terminal async base directory exceptions filepath optparse-applicative path path-io process safe stm validity @@ -202551,8 +205660,8 @@ self: { }: mkDerivation { pname = "zifter-cabal"; - version = "0.0.0.0"; - sha256 = "3ea3b662b68174f44d7e7eb2b5032d928743ecad3e7fa3a466194159c47929e4"; + version = "0.0.0.1"; + sha256 = "6d30f26a383b8c3d34f4efcd3b486a954925aebb0d522a0dd8fd8b99ef124831"; libraryHaskellDepends = [ base directory filepath path path-io process zifter ]; @@ -202575,14 +205684,30 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "zifter-google-java-format" = callPackage + ({ mkDerivation, base, filepath, path, path-io, process, safe + , zifter + }: + mkDerivation { + pname = "zifter-google-java-format"; + version = "0.0.0.0"; + sha256 = "869473829280f46f0b3de45788e32ffaf9fc99b56074d45c4cf42f48deab834e"; + libraryHaskellDepends = [ + base filepath path path-io process safe zifter + ]; + homepage = "http://cs-syd.eu"; + description = "zifter-google-java-format"; + license = stdenv.lib.licenses.mit; + }) {}; + "zifter-hindent" = callPackage ({ mkDerivation, base, directory, filepath, path, path-io, process , safe, zifter }: mkDerivation { pname = "zifter-hindent"; - version = "0.0.0.0"; - sha256 = "39ade41a13e0aa8b675a15cfeb34605eb4caa78f035fdd2470681c4814b16d06"; + version = "0.0.0.1"; + sha256 = "4fc534385b8b3ec91761fac85ef62b5492abd253c940dac128b8e01ff8a61c83"; libraryHaskellDepends = [ base directory filepath path path-io process safe zifter ]; @@ -202676,6 +205801,8 @@ self: { pname = "zip"; version = "0.1.10"; sha256 = "8ec11736f49ffc9b07fa51910d7e06791358e02ba4073e5ad6346b7d3172530d"; + revision = "1"; + editedCabalFile = "5757bd13370617bf0ab4ecab55d4b7afb399a68aa7a09675a4c5332bd1abc492"; libraryHaskellDepends = [ base bytestring bzlib-conduit case-insensitive cereal conduit conduit-extra containers digest exceptions filepath mtl path @@ -202692,19 +205819,16 @@ self: { }) {}; "zip-archive" = callPackage - ({ mkDerivation, array, base, binary, bytestring, Cabal, containers + ({ mkDerivation, array, base, binary, bytestring, containers , digest, directory, filepath, HUnit, mtl, old-time, pretty , process, temporary, text, time, unix, zip, zlib }: mkDerivation { pname = "zip-archive"; - version = "0.3.0.5"; - sha256 = "dc83366e44d735df4088eb174c02c35a522e6228c04fecc35fe9493299fc97c7"; - revision = "1"; - editedCabalFile = "f9284c6bdf1e6c9f85091c602faae19dfad856ac6628531d999a611994f3da86"; + version = "0.3.0.6"; + sha256 = "8140104a15d2961480c212a1e061a6d1b2af62357930de950e5debedb0abd5b6"; isLibrary = true; isExecutable = true; - setupHaskellDepends = [ base Cabal ]; libraryHaskellDepends = [ array base binary bytestring containers digest directory filepath mtl old-time pretty text time unix zlib @@ -202750,6 +205874,31 @@ self: { hydraPlatforms = stdenv.lib.platforms.none; }) {}; + "zip-stream" = callPackage + ({ mkDerivation, base, binary, binary-conduit, bytestring, conduit + , conduit-extra, digest, directory, exceptions, filepath, mtl + , primitive, resourcet, time, transformers-base, zlib + }: + mkDerivation { + pname = "zip-stream"; + version = "0.1"; + sha256 = "9225a4cf754fad3e7ba96c589bd8fddc50dda42948e70981b1b4b784dba10e17"; + revision = "1"; + editedCabalFile = "575cbce9074afa5785c15eeac758e8d50614fb90eb36cb2150ee3e208fb3e979"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base binary binary-conduit bytestring conduit conduit-extra digest + exceptions mtl primitive resourcet time transformers-base zlib + ]; + executableHaskellDepends = [ + base bytestring conduit conduit-extra directory filepath resourcet + time + ]; + description = "ZIP archive streaming using conduits"; + license = stdenv.lib.licenses.bsd3; + }) {}; + "zipedit" = callPackage ({ mkDerivation, base, directory, mtl, process }: mkDerivation { @@ -202794,15 +205943,16 @@ self: { }) {}; "zippers" = callPackage - ({ mkDerivation, base, criterion, directory, doctest, filepath + ({ mkDerivation, base, Cabal, cabal-doctest, criterion, doctest , lens, profunctors, semigroupoids }: mkDerivation { pname = "zippers"; - version = "0.2.2"; - sha256 = "d9c499cec6f60e0556b9874d2bf3b801b0a022b226a396200d11b91d3a1aede7"; + version = "0.2.3"; + sha256 = "1ba74cb927bce3e62b74861414e55b33160f6bd29313fa779e86b190ed18eb5d"; + setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ base lens profunctors semigroupoids ]; - testHaskellDepends = [ base directory doctest filepath ]; + testHaskellDepends = [ base doctest ]; benchmarkHaskellDepends = [ base criterion lens ]; homepage = "http://github.com/ekmett/zippers/"; description = "Traversal based zippers"; @@ -202828,8 +205978,8 @@ self: { }: mkDerivation { pname = "ziptastic-client"; - version = "0.3.0.1"; - sha256 = "dbe176c9a0bbb2b612fdabdde49ef92b89b5313913133b6582a170b692b0649a"; + version = "0.3.0.2"; + sha256 = "1a22bec1fc6d90a0c33a0a628a8324a93a879a091dfae29f7d9fd8c88b402aab"; libraryHaskellDepends = [ base base-compat http-client iso3166-country-codes servant servant-client text ziptastic-core @@ -202850,8 +206000,8 @@ self: { }: mkDerivation { pname = "ziptastic-core"; - version = "0.2.0.1"; - sha256 = "1512fe53b08e157895d5ae449cfe3ba65c859057394fa0bd9b4158f8c4502532"; + version = "0.2.0.2"; + sha256 = "d3cf39366b03e75460e116da10e0ea27280a18281afa3fab2a54ef0496fe2bc3"; libraryHaskellDepends = [ aeson base base-compat bytestring http-api-data iso3166-country-codes servant text tz diff --git a/pkgs/development/haskell-modules/make-package-set.nix b/pkgs/development/haskell-modules/make-package-set.nix index 29b294619e6..e599b56545d 100644 --- a/pkgs/development/haskell-modules/make-package-set.nix +++ b/pkgs/development/haskell-modules/make-package-set.nix @@ -44,9 +44,35 @@ self: let mkDerivation = makeOverridable mkDerivationImpl; - callPackageWithScope = scope: drv: args: (stdenv.lib.callPackageWith scope drv args) // { - overrideScope = f: callPackageWithScope (mkScope (fix' (extends f scope.__unfix__))) drv args; - }; + # manualArgs are the arguments that were explictly passed to `callPackage`, like: + # + # callPackage foo { bar = null; }; + # + # here `bar` is a manual argument. + callPackageWithScope = scope: fn: manualArgs: + let + # this code is copied from callPackage in lib/customisation.nix + # + # we cannot use `callPackage` here because we want to call `makeOverridable` + # on `drvScope` (we cannot add `overrideScope` after calling `callPackage` because then it is + # lost on `.override`) but determine the auto-args based on `drv` (the problem here + # is that nix has no way to "passthrough" args while preserving the reflection + # info that callPackage uses to determine the arguments). + drv = if builtins.isFunction fn then fn else import fn; + auto = builtins.intersectAttrs (builtins.functionArgs drv) scope; + + # this wraps the `drv` function to add a `overrideScope` function to the result. + drvScope = allArgs: drv allArgs // { + overrideScope = f: + let newScope = mkScope (fix' (extends f scope.__unfix__)); + # note that we have to be careful here: `allArgs` includes the auto-arguments that + # weren't manually specified. If we would just pass `allArgs` to the recursive call here, + # then we wouldn't look up any packages in the scope in the next interation, because it + # appears as if all arguments were already manually passed, so the scope change would do + # nothing. + in callPackageWithScope newScope drv manualArgs; + }; + in stdenv.lib.makeOverridable drvScope (auto // manualArgs); mkScope = scope: pkgs // pkgs.xorg // pkgs.gnome2 // scope; defaultScope = mkScope self; @@ -63,7 +89,8 @@ self: let sha256Arg = if isNull sha256 then "--sha256=" else ''--sha256="${sha256}"''; in pkgs.stdenv.mkDerivation { name = "cabal2nix-${name}"; - buildInputs = [ pkgs.cabal2nix ]; + buildInputs = [ pkgs.haskellPackages.cabal2nix ]; + preferLocalBuild = true; phases = ["installPhase"]; LANG = "en_US.UTF-8"; LOCALE_ARCHIVE = pkgs.lib.optionalString pkgs.stdenv.isLinux "${pkgs.glibcLocales}/lib/locale/locale-archive"; @@ -74,7 +101,7 @@ self: let ''; }; - hackage2nix = name: version: haskellSrc2nix { + hackage2nix = name: version: self.haskellSrc2nix { name = "${name}-${version}"; sha256 = ''$(sed -e 's/.*"SHA256":"//' -e 's/".*$//' "${all-cabal-hashes}/${name}/${version}/${name}.json")''; src = "${all-cabal-hashes}/${name}/${version}/${name}.cabal"; diff --git a/pkgs/development/haskell-modules/with-packages-wrapper.nix b/pkgs/development/haskell-modules/with-packages-wrapper.nix index 15d66bbd6dc..147a021ff53 100644 --- a/pkgs/development/haskell-modules/with-packages-wrapper.nix +++ b/pkgs/development/haskell-modules/with-packages-wrapper.nix @@ -96,7 +96,28 @@ symlinkJoin { makeWrapper ${ghc}/bin/$prg $out/bin/$prg --add-flags "${packageDBFlag}=${packageCfgDir}" fi done - + '' + (lib.optionalString stdenv.isDarwin '' + # Work around a linker limit in Mac OS X Sierra (see generic-builder.nix): + local packageConfDir="$out/lib/${ghc.name}/package.conf.d"; + local dynamicLinksDir="$out/lib/links" + mkdir -p $dynamicLinksDir + # Clean up the old links that may have been (transitively) included by + # symlinkJoin: + rm -f $dynamicLinksDir/* + for d in $(grep dynamic-library-dirs $packageConfDir/*|awk '{print $2}'); do + ln -s $d/*.dylib $dynamicLinksDir + done + for f in $packageConfDir/*.conf; do + # Initially, $f is a symlink to a read-only file in one of the inputs + # (as a result of this symlinkJoin derivation). + # Replace it with a copy whose dynamic-library-dirs points to + # $dynamicLinksDir + cp $f $f-tmp + rm $f + sed "s,dynamic-library-dirs: .*,dynamic-library-dirs: $dynamicLinksDir," $f-tmp > $f + rm $f-tmp + done + '') + '' ${lib.optionalString hasLibraries "$out/bin/${ghcCommand}-pkg recache"} ${# ghcjs will read the ghc_libdir file when resolving plugins. lib.optionalString (isGhcjs && ghcLibdir != null) '' diff --git a/pkgs/development/interpreters/elixir/default.nix b/pkgs/development/interpreters/elixir/default.nix index 31a58bcde11..0e77b2af252 100644 --- a/pkgs/development/interpreters/elixir/default.nix +++ b/pkgs/development/interpreters/elixir/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "elixir-${version}"; - version = "1.4.2"; + version = "1.4.4"; src = fetchFromGitHub { owner = "elixir-lang"; repo = "elixir"; rev = "v${version}"; - sha256 = "0jqww3l5jgqvlqpp6lh8i55v23a5imw4giarr05gsl7imv2qqshz"; + sha256 = "0m51cirkv1dahw4z2jlmz58cwmpy0dya88myx4wykq0v5bh1xbq8"; }; buildInputs = [ erlang rebar makeWrapper ]; diff --git a/pkgs/development/interpreters/love/0.10.nix b/pkgs/development/interpreters/love/0.10.nix index 04b574d4559..854052edf05 100644 --- a/pkgs/development/interpreters/love/0.10.nix +++ b/pkgs/development/interpreters/love/0.10.nix @@ -28,6 +28,8 @@ stdenv.mkDerivation rec { "--with-lua=luajit" ]; + NIX_CFLAGS_COMPILE = [ "-DluaL_reg=luaL_Reg" ]; # needed since luajit-2.1.0-beta3 + meta = { homepage = "http://love2d.org"; description = "A Lua-based 2D game engine/scripting language"; diff --git a/pkgs/development/interpreters/love/0.9.nix b/pkgs/development/interpreters/love/0.9.nix index f08d1d2ec7e..da733ef29a8 100644 --- a/pkgs/development/interpreters/love/0.9.nix +++ b/pkgs/development/interpreters/love/0.9.nix @@ -20,6 +20,8 @@ stdenv.mkDerivation rec { "--with-lua=luajit" ]; + NIX_CFLAGS_COMPILE = [ "-DluaL_reg=luaL_Reg" ]; # needed since luajit-2.1.0-beta3 + meta = { homepage = "http://love2d.org"; description = "A Lua-based 2D game engine/scripting language"; diff --git a/pkgs/development/interpreters/lua-5/expat.nix b/pkgs/development/interpreters/lua-5/expat.nix deleted file mode 100644 index fb0bb5e5ff5..00000000000 --- a/pkgs/development/interpreters/lua-5/expat.nix +++ /dev/null @@ -1,26 +0,0 @@ -{ stdenv, fetchurl, lua5, expat }: - -stdenv.mkDerivation rec { - version = "1.3.0"; - name = "lua-expat-${version}"; - isLibrary = true; - src = fetchurl { - url = "https://matthewwild.co.uk/projects/luaexpat/luaexpat-${version}.tar.gz"; - sha256 = "1hvxqngn0wf5642i5p3vcyhg3pmp102k63s9ry4jqyyqc1wkjq6h"; - }; - - buildInputs = [ lua5 expat ]; - - preBuild = '' - makeFlagsArray=( - LUA_LDIR="$out/share/lua/${lua5.luaversion}" - LUA_INC="-I${lua5}/include" LUA_CDIR="$out/lib/lua/${lua5.luaversion}" - EXPAT_INC="-I${expat.dev}/include"); - ''; - - meta = { - homepage = "http://matthewwild.co.uk/projects/luaexpat"; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.flosse ]; - }; -} diff --git a/pkgs/development/interpreters/lua-5/sec.nix b/pkgs/development/interpreters/lua-5/sec.nix deleted file mode 100644 index 478f65fd828..00000000000 --- a/pkgs/development/interpreters/lua-5/sec.nix +++ /dev/null @@ -1,29 +0,0 @@ -{ stdenv, fetchurl, lua5, openssl }: - -stdenv.mkDerivation rec { - version = "0.5"; - name = "lua-sec-${version}"; - src = fetchurl { - url = "https://github.com/brunoos/luasec/archive/luasec-${version}.tar.gz"; - sha256 = "08rm12cr1gjdnbv2jpk7xykby9l292qmz2v0dfdlgb4jfj7mk034"; - }; - - buildInputs = [ lua5 openssl ]; - - hardeningDisable = stdenv.lib.optional stdenv.isi686 "stackprotector"; - - preBuild = '' - makeFlagsArray=( - linux - LUAPATH="$out/lib/lua/${lua5.luaversion}" - LUACPATH="$out/lib/lua/${lua5.luaversion}" - INC_PATH="-I${lua5}/include" - LIB_PATH="-L$out/lib"); - ''; - - meta = { - homepage = "https://github.com/brunoos/luasec"; - platforms = stdenv.lib.platforms.linux; - maintainers = [ stdenv.lib.maintainers.flosse ]; - }; -} diff --git a/pkgs/development/interpreters/luajit/default.nix b/pkgs/development/interpreters/luajit/default.nix index 6da5c265aaf..1694e3e4850 100644 --- a/pkgs/development/interpreters/luajit/default.nix +++ b/pkgs/development/interpreters/luajit/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "luajit-${version}"; - version = "2.1.0-beta2"; + version = "2.1.0-beta3"; luaversion = "5.1"; src = fetchurl { url = "http://luajit.org/download/LuaJIT-${version}.tar.gz"; - sha256 = "0iyghj1xjlmd9ywa4flf9yszynf3jhbp0yqb9b49k7ab0g528fbi"; + sha256 = "1hyrhpkwjqsv54hnnx4cl8vk44h9d6c9w0fz1jfjz00w255y7lhs"; }; enableParallelBuilding = true; diff --git a/pkgs/development/interpreters/perl/default.nix b/pkgs/development/interpreters/perl/default.nix index f013f6ec372..3fe04e6bde2 100644 --- a/pkgs/development/interpreters/perl/default.nix +++ b/pkgs/development/interpreters/perl/default.nix @@ -36,7 +36,7 @@ let ./no-sys-dirs.patch ] ++ optional stdenv.isSunOS ./ld-shared.patch - ++ optional stdenv.isDarwin [ ./cpp-precomp.patch ]; + ++ optional stdenv.isDarwin [ ./cpp-precomp.patch ./sw_vers.patch ]; postPatch = '' pwd="$(type -P pwd)" @@ -121,17 +121,16 @@ let in rec { - perl = perl522; - - perl520 = common { - version = "5.20.3"; - sha256 = "0jlvpd5l5nk7lzfd4akdg1sw6vinbkj6izclyyr0lrbidfky691m"; + perl = perl524; + perl522 = common { + version = "5.22.3"; + sha256 = "10q087l1ffdy3gpryr8z540jcnsr0dhm37raicyfqqkyvys1yd8v"; }; - perl522 = common { - version = "5.22.2"; - sha256 = "1hl3v85ggm027v9h2ycas4z5i3401s2k2l3qpnw8q5mahmiikbc1"; + perl524 = common { + version = "5.24.1"; + sha256 = "1bqqb5ghfj4486nqr77kgsd8aff6a289jy7n2cdkznwvn34qbhg6"; }; } diff --git a/pkgs/development/interpreters/perl/sw_vers.patch b/pkgs/development/interpreters/perl/sw_vers.patch new file mode 100644 index 00000000000..9d4cd75486e --- /dev/null +++ b/pkgs/development/interpreters/perl/sw_vers.patch @@ -0,0 +1,13 @@ +diff --git a/hints/darwin.sh b/hints/darwin.sh +index afadf53..80b7533 100644 +--- a/hints/darwin.sh ++++ b/hints/darwin.sh +@@ -329,7 +329,7 @@ EOM + # sw_vers output what we want + # "ProductVersion: 10.10.5" "10.10" + # "ProductVersion: 10.11" "10.11" +- prodvers=`sw_vers|awk '/^ProductVersion:/{print $2}'|awk -F. '{print $1"."$2}'` ++ prodvers="10.10" + case "$prodvers" in + 10.*) + add_macosx_version_min ccflags $prodvers diff --git a/pkgs/development/interpreters/php/default.nix b/pkgs/development/interpreters/php/default.nix index c3f56b4c664..dc1df2dd48a 100644 --- a/pkgs/development/interpreters/php/default.nix +++ b/pkgs/development/interpreters/php/default.nix @@ -23,11 +23,6 @@ let buildInputs = [ flex bison pkgconfig ] ++ lib.optional stdenv.isLinux systemd; - configureFlags = [ - "EXTENSION_DIR=$(out)/lib/php/extensions" - ] ++ lib.optional stdenv.isDarwin "--with-iconv=${libiconv}" - ++ lib.optional stdenv.isLinux "--with-fpm-systemd"; - flags = { # much left to do here... @@ -267,26 +262,40 @@ let hardeningDisable = [ "bindnow" ]; - configurePhase = '' + preConfigure = '' # Don't record the configure flags since this causes unnecessary - # runtime dependencies - except for php-embed, as uwsgi needs them. - ${lib.optionalString (!(config.php.embed or false)) '' + # runtime dependencies for i in main/build-defs.h.in scripts/php-config.in; do substituteInPlace $i \ --replace '@CONFIGURE_COMMAND@' '(omitted)' \ --replace '@CONFIGURE_OPTIONS@' "" \ --replace '@PHP_LDFLAGS@' "" done - ''} - [[ -z "$libxml2" ]] || export PATH=$PATH:$libxml2/bin - ./configure --with-config-file-scan-dir=/etc/php.d --with-config-file-path=$out/etc --prefix=$out $configureFlags + #[[ -z "$libxml2" ]] || addToSearchPath PATH $libxml2/bin + + configureFlags+=(--with-config-file-path=$out/etc \ + --includedir=$dev/include \ + EXTENSION_DIR=$out/lib/php/extensions) ''; + configureFlags = [ + "--with-config-file-scan-dir=/etc/php.d" + ] ++ lib.optional stdenv.isDarwin "--with-iconv=${libiconv}" + ++ lib.optional stdenv.isLinux "--with-fpm-systemd"; + postInstall = '' cp php.ini-production $out/etc/php.ini ''; + postFixup = '' + mkdir -p $dev/bin $dev/share/man/man1 + mv $out/bin/phpize $out/bin/php-config $dev/bin/ + mv $out/share/man/man1/phpize.1.gz \ + $out/share/man/man1/php-config.1.gz \ + $dev/share/man/man1/ + ''; + src = fetchurl { url = "http://www.php.net/distributions/php-${version}.tar.bz2"; inherit sha256; @@ -298,6 +307,7 @@ let license = licenses.php301; maintainers = with maintainers; [ globin ]; platforms = platforms.all; + outputsToInstall = [ "out" "dev" ]; }; patches = if !php7 then [ ./fix-paths.patch ] else [ ./fix-paths-php7.patch ]; @@ -319,8 +329,8 @@ in { }; php70 = generic { - version = "7.0.16"; - sha256 = "1awp6l5bs7qkvak9hgn1qbwkn6303mprslmgcfjyq3ywfmszbic3"; + version = "7.0.19"; + sha256 = "0nbxgx5fkj1bcach97a3169kwic7jbd4b435n7v25v1aq2pw0fhg"; }; php71 = generic { diff --git a/pkgs/development/interpreters/python/cpython/3.3/default.nix b/pkgs/development/interpreters/python/cpython/3.3/default.nix index 3ab0de96704..c561a1ed750 100644 --- a/pkgs/development/interpreters/python/cpython/3.3/default.nix +++ b/pkgs/development/interpreters/python/cpython/3.3/default.nix @@ -50,7 +50,17 @@ in stdenv.mkDerivation { NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isLinux "-lgcc_s"; - postPatch = optionalString (x11Support && (tix != null)) '' + # Determinism: The interpreter is patched to write null timestamps when compiling python files. + # This way python doesn't try to update them when we freeze timestamps in nix store. + DETERMINISTIC_BUILD=1; + # Determinism: We fix the hashes of str, bytes and datetime objects. + PYTHONHASHSEED=0; + + postPatch = '' + # Determinism + substituteInPlace "Lib/py_compile.py" --replace "source_stats['mtime']" "(1 if 'DETERMINISTIC_BUILD' in os.environ else source_stats['mtime'])" +# # We do not patch `Lib/importlib/_bootstrap_external.py` because it does not exist. + '' + optionalString (x11Support && (tix != null)) '' substituteInPlace "Lib/tkinter/tix.py" --replace "os.environ.get('TIX_LIBRARY')" "os.environ.get('TIX_LIBRARY') or '${tix}/lib'" ''; @@ -80,12 +90,17 @@ in stdenv.mkDerivation { fi done touch $out/lib/python${majorVersion}/test/__init__.py + ln -s "$out/include/python${majorVersion}m" "$out/include/python${majorVersion}" paxmark E $out/bin/python${majorVersion} # Python on Nix is not manylinux1 compatible. https://github.com/NixOS/nixpkgs/issues/18484 echo "manylinux1_compatible=False" >> $out/lib/${libPrefix}/_manylinux.py + # Determinism: Windows installers were not deterministic. + # We're also not interested in building Windows installers. + find "$out" -name 'wininst*.exe' | xargs -r rm -f + # Use Python3 as default python ln -s "$out/bin/idle3" "$out/bin/idle" ln -s "$out/bin/pip3" "$out/bin/pip" @@ -93,18 +108,20 @@ in stdenv.mkDerivation { ln -s "$out/bin/python3" "$out/bin/python" ln -s "$out/bin/python3-config" "$out/bin/python-config" ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc" - ''; - postFixup = '' # Get rid of retained dependencies on -dev packages, and remove # some $TMPDIR references to improve binary reproducibility. + # Note that the .pyc file of _sysconfigdata.py should be regenerated! for i in $out/lib/python${majorVersion}/_sysconfigdata.py $out/lib/python${majorVersion}/config-${majorVersion}m/Makefile; do sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g" done - # FIXME: should regenerate this. - rm $out/lib/python${majorVersion}/__pycache__/_sysconfigdata.cpython* - + # Determinism: rebuild all bytecode + # We exclude lib2to3 because that's Python 2 code which fails + # We rebuild three times, once for each optimization level + find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - ''; passthru = let diff --git a/pkgs/development/interpreters/python/cpython/3.4/default.nix b/pkgs/development/interpreters/python/cpython/3.4/default.nix index 58e4f21bb4a..b2a4d849c94 100644 --- a/pkgs/development/interpreters/python/cpython/3.4/default.nix +++ b/pkgs/development/interpreters/python/cpython/3.4/default.nix @@ -132,24 +132,19 @@ in stdenv.mkDerivation { ln -s "$out/bin/python3-config" "$out/bin/python-config" ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc" - # Determinism: rebuild all bytecode - # We exclude lib2to3 because that's Python 2 code which fails - # We rebuild three times, once for each optimization level - find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - - ''; - - postFixup = '' # Get rid of retained dependencies on -dev packages, and remove # some $TMPDIR references to improve binary reproducibility. + # Note that the .pyc file of _sysconfigdata.py should be regenerated! for i in $out/lib/python${majorVersion}/_sysconfigdata.py $out/lib/python${majorVersion}/config-${majorVersion}m/Makefile; do sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g" done - # FIXME: should regenerate this. - rm $out/lib/python${majorVersion}/__pycache__/_sysconfigdata.cpython* - + # Determinism: rebuild all bytecode + # We exclude lib2to3 because that's Python 2 code which fails + # We rebuild three times, once for each optimization level + find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - ''; passthru = let diff --git a/pkgs/development/interpreters/python/cpython/3.5/default.nix b/pkgs/development/interpreters/python/cpython/3.5/default.nix index 082f6ff6789..76f445f7a50 100644 --- a/pkgs/development/interpreters/python/cpython/3.5/default.nix +++ b/pkgs/development/interpreters/python/cpython/3.5/default.nix @@ -134,23 +134,19 @@ in stdenv.mkDerivation { ln -s "$out/bin/python3-config" "$out/bin/python-config" ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc" - # Determinism: rebuild all bytecode - # We exclude lib2to3 because that's Python 2 code which fails - # We rebuild three times, once for each optimization level - find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - - find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - - ''; - - postFixup = '' # Get rid of retained dependencies on -dev packages, and remove # some $TMPDIR references to improve binary reproducibility. + # Note that the .pyc file of _sysconfigdata.py should be regenerated! for i in $out/lib/python${majorVersion}/_sysconfigdata.py $out/lib/python${majorVersion}/config-${majorVersion}m/Makefile; do sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g" done - # FIXME: should regenerate this. - rm $out/lib/python${majorVersion}/__pycache__/_sysconfigdata.cpython* + # Determinism: rebuild all bytecode + # We exclude lib2to3 because that's Python 2 code which fails + # We rebuild three times, once for each optimization level + find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i - + find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i - ''; passthru = let diff --git a/pkgs/development/interpreters/python/cpython/3.6/default.nix b/pkgs/development/interpreters/python/cpython/3.6/default.nix index 78e57fef15f..15078619166 100644 --- a/pkgs/development/interpreters/python/cpython/3.6/default.nix +++ b/pkgs/development/interpreters/python/cpython/3.6/default.nix @@ -126,6 +126,13 @@ in stdenv.mkDerivation { ln -s "$out/bin/python3-config" "$out/bin/python-config" ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc" + # Get rid of retained dependencies on -dev packages, and remove + # some $TMPDIR references to improve binary reproducibility. + # Note that the .pyc file of _sysconfigdata.py should be regenerated! + for i in $out/lib/python${majorVersion}/_sysconfigdata*.py $out/lib/python${majorVersion}/config-${majorVersion}m*/Makefile; do + sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g" + done + # Determinism: rebuild all bytecode # We exclude lib2to3 because that's Python 2 code which fails # We rebuild three times, once for each optimization level diff --git a/pkgs/development/libraries/accelio/default.nix b/pkgs/development/libraries/accelio/default.nix index 002b26078f5..a1f229ca5fb 100644 --- a/pkgs/development/libraries/accelio/default.nix +++ b/pkgs/development/libraries/accelio/default.nix @@ -59,7 +59,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ wkennington ]; # kernel 4.2 is the most recent supported kernel broken = kernel != null && - (builtins.compareVersions kernel.version "4.2" == 1 || - (kernel.features.grsecurity or false)); + (builtins.compareVersions kernel.version "4.2" == 1); }; } diff --git a/pkgs/development/libraries/audio/libgme/default.nix b/pkgs/development/libraries/audio/libgme/default.nix new file mode 100644 index 00000000000..3bc048dd22f --- /dev/null +++ b/pkgs/development/libraries/audio/libgme/default.nix @@ -0,0 +1,23 @@ +{ stdenv, fetchFromBitbucket, cmake }: +let + version = "0.6.1"; +in stdenv.mkDerivation { + name = "libgme-${version}"; + + meta = with stdenv.lib; { + description = "A collection of video game music chip emulators"; + homepage = "https://bitbucket.org/mpyne/game-music-emu/overview"; + license = licenses.lgpl21; + platforms = platforms.all; + maintainers = with maintainers; [ lheckemann ]; + }; + + src = fetchFromBitbucket { + owner = "mpyne"; + repo = "game-music-emu"; + rev = version; + sha256 = "04vwpv3pmjcil1jw5vcnlg45nch5awqs06y3xqdlp3ibx5i4k199"; + }; + + buildInputs = [ cmake ]; +} diff --git a/pkgs/development/libraries/c-blosc/default.nix b/pkgs/development/libraries/c-blosc/default.nix new file mode 100644 index 00000000000..5066b0a3250 --- /dev/null +++ b/pkgs/development/libraries/c-blosc/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchFromGitHub, cmake }: + +stdenv.mkDerivation rec { + name = "c-blosc"; + version = "1.11.3"; + + src = fetchFromGitHub { + owner = "Blosc"; + repo = "c-blosc"; + rev = "v${version}"; + sha256 = "18665lwszwbb48pxgisyxxjh92sr764hv6h7jw8zzsmzdkgzrmcw"; + }; + + buildInputs = [ cmake ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "A blocking, shuffling and loss-less compression library"; + homepage = http://www.blosc.org; + license = licenses.bsd3; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/capnproto/clang4.patch b/pkgs/development/libraries/capnproto/clang4.patch deleted file mode 100644 index e83abe9f433..00000000000 --- a/pkgs/development/libraries/capnproto/clang4.patch +++ /dev/null @@ -1,22 +0,0 @@ -From 0f1fd1938b19dccdb5dbfe9cb5177c4342a2a5b5 Mon Sep 17 00:00:00 2001 -From: Eric Fiselier <eric@efcs.ca> -Date: Thu, 29 Dec 2016 14:23:40 -0700 -Subject: [PATCH] Fix conversion build error when building with Clang 4.0 - ---- - c++/src/capnp/layout.h | 2 +- - 1 file changed, 1 insertion(+), 1 deletion(-) - -diff --git a/c++/src/capnp/layout.h b/c++/src/capnp/layout.h -index 850925a..b955f08 100644 ---- a/src/capnp/layout.h -+++ b/src/capnp/layout.h -@@ -126,7 +126,7 @@template <> struct ElementSizeForType<Void> { static constexpr ElementSize value - template <> struct ElementSizeForType<bool> { static constexpr ElementSize value = ElementSize::BIT; }; - - // Lists and blobs are pointers, not structs. --template <typename T, bool b> struct ElementSizeForType<List<T, b>> { -+template <typename T, Kind K> struct ElementSizeForType<List<T, K>> { - static constexpr ElementSize value = ElementSize::POINTER; - }; - template <> struct ElementSizeForType<Text> { diff --git a/pkgs/development/libraries/capnproto/default.nix b/pkgs/development/libraries/capnproto/default.nix index 0a5df88efdb..fd2271844ac 100644 --- a/pkgs/development/libraries/capnproto/default.nix +++ b/pkgs/development/libraries/capnproto/default.nix @@ -2,18 +2,13 @@ stdenv.mkDerivation rec { name = "capnproto-${version}"; - version = "0.5.3"; + version = "0.6.0"; src = fetchurl { url = "https://capnproto.org/capnproto-c++-${version}.tar.gz"; - sha256 = "1yvaadhgakskqq5wpv53hd6fc3pp17mrdldw4i5cvgck4iwprcfd"; + sha256 = "0gpp1cxsb9nfd7qkjjykzknx03y0z0n4bq5q0fmxci7w38ci22g5"; }; - patches = [ - # Remove once they release a version above 0.5.3. See https://github.com/sandstorm-io/capnproto/issues/433 - ./clang4.patch - ]; - meta = with stdenv.lib; { homepage = "http://kentonv.github.io/capnproto"; description = "Cap'n Proto cerealization protocol"; diff --git a/pkgs/development/libraries/cimg/builder.sh b/pkgs/development/libraries/cimg/builder.sh deleted file mode 100644 index 6473395493c..00000000000 --- a/pkgs/development/libraries/cimg/builder.sh +++ /dev/null @@ -1,11 +0,0 @@ - -source $stdenv/setup - -unpackPhase -cd $sourceRoot - -install -dm 755 $out/include/cimg $doc/share/doc/cimg/html $doc/share/cimg/examples $doc/share/cimg/plugins - -install -m 644 CImg.h $out/include/cimg -cp -dr --no-preserve=ownership examples/* $doc/share/cimg/examples/ -cp -dr --no-preserve=ownership plugins/* $doc/share/cimg/plugins/ diff --git a/pkgs/development/libraries/cimg/default.nix b/pkgs/development/libraries/cimg/default.nix index a9470ee3f41..c294647b35d 100644 --- a/pkgs/development/libraries/cimg/default.nix +++ b/pkgs/development/libraries/cimg/default.nix @@ -1,5 +1,4 @@ -{ stdenv, fetchurl -, unzip }: +{ stdenv, fetchurl, unzip }: stdenv.mkDerivation rec { @@ -13,7 +12,14 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ unzip ]; - builder = ./builder.sh; + installPhase = '' + install -dm 755 $out/include/CImg/plugins $doc/share/doc/cimg/examples + + install -m 644 CImg.h $out/include/ + cp -dr --no-preserve=ownership examples/* $doc/share/doc/cimg/examples/ + cp -dr --no-preserve=ownership plugins/* $out/include/CImg/plugins/ + cp README.txt $doc/share/doc/cimg/ + ''; outputs = [ "out" "doc" ]; diff --git a/pkgs/development/libraries/clutter/default.nix b/pkgs/development/libraries/clutter/default.nix index af7acb35aac..a0479d9d73c 100644 --- a/pkgs/development/libraries/clutter/default.nix +++ b/pkgs/development/libraries/clutter/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchurl, glib, pkgconfig, mesa, libX11, libXext, libXfixes , libXdamage, libXcomposite, libXi, cogl, pango, atk, json_glib, -gobjectIntrospection +gobjectIntrospection, gtk3 }: let @@ -15,6 +15,7 @@ stdenv.mkDerivation rec { sha256 = "01nfjd4k7j2n3agpx2d9ncff86nfsqv4n23465rb9zmk4iw4wlb7"; }; + buildInputs = [ gtk3 ]; nativeBuildInputs = [ pkgconfig ]; propagatedBuildInputs = [ libX11 mesa libXext libXfixes libXdamage libXcomposite libXi cogl pango diff --git a/pkgs/development/libraries/cmark/default.nix b/pkgs/development/libraries/cmark/default.nix index 303a6ccaeb8..5fdd1edfd97 100644 --- a/pkgs/development/libraries/cmark/default.nix +++ b/pkgs/development/libraries/cmark/default.nix @@ -1,20 +1,27 @@ -{ stdenv, fetchurl, cmake }: +{ stdenv, fetchFromGitHub, cmake }: stdenv.mkDerivation rec { - version = "0.23.0"; + version = "0.27.1"; name = "cmark-${version}"; - src = fetchurl { - url = "https://github.com/jgm/cmark/archive/${version}.tar.gz"; - sha256 = "87d289965066fce7be247d44c0304af1b20817dcc1b563702302ae33f2be0596"; + src = fetchFromGitHub { + owner = "jgm"; + repo = "cmark"; + rev = version; + sha256 = "06miwq3rl2bighkn6iq7bdwzmvcqa53qwpa0pqjqa8yn44j8ijj8"; }; - buildInputs = [ cmake ]; + nativeBuildInputs = [ cmake ]; + doCheck = true; + checkPhase = '' + export LD_LIBRARY_PATH=$(readlink -f ./src) + CTEST_OUTPUT_ON_FAILURE=1 make test + ''; - meta = { + meta = with stdenv.lib; { description = "CommonMark parsing and rendering library and program in C"; homepage = https://github.com/jgm/cmark; - maintainers = [ stdenv.lib.maintainers.michelk ]; - platforms = stdenv.lib.platforms.unix; + maintainers = [ maintainers.michelk ]; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/cpp-hocon/default.nix b/pkgs/development/libraries/cpp-hocon/default.nix index 90c27083d77..6014c9f4eaf 100644 --- a/pkgs/development/libraries/cpp-hocon/default.nix +++ b/pkgs/development/libraries/cpp-hocon/default.nix @@ -2,10 +2,10 @@ stdenv.mkDerivation rec { name = "cpp-hocon-${version}"; - version = "0.1.4"; + version = "0.1.5"; src = fetchFromGitHub { - sha256 = "1abalk0sjfg4yfz148hdknsbnl2xwjb8li7lqc64d07ifxhcqr87"; + sha256 = "0fc5468458mz572nbp45x5sblp6dsb4d1b6jqv77zf3mx5xyziz7"; rev = version; repo = "cpp-hocon"; owner = "puppetlabs"; diff --git a/pkgs/development/libraries/ctpp2/default.nix b/pkgs/development/libraries/ctpp2/default.nix index 905121286c8..bb1d4458f50 100644 --- a/pkgs/development/libraries/ctpp2/default.nix +++ b/pkgs/development/libraries/ctpp2/default.nix @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { meta = { description = "A high performance templating engine"; homepage = http://ctpp.havoc.ru; - maintiainers = with stdenv.lib.maintainers; [ robbinch ]; + maintainers = with stdenv.lib.maintainers; [ robbinch ]; platforms = with stdenv.lib.platforms; linux; }; } diff --git a/pkgs/development/libraries/curlcpp/default.nix b/pkgs/development/libraries/curlcpp/default.nix index 546259cd70c..9baa9aba480 100644 --- a/pkgs/development/libraries/curlcpp/default.nix +++ b/pkgs/development/libraries/curlcpp/default.nix @@ -1,13 +1,14 @@ { stdenv, fetchFromGitHub, cmake, curl }: -stdenv.mkDerivation { - name = "curlcpp-20160901"; +stdenv.mkDerivation rec { + name = "curlcpp-${version}"; + version = "1.0"; src = fetchFromGitHub { owner = "JosephP91"; repo = "curlcpp"; - rev = "98286da1d6c9f6158344a8e272eae5030cbf6c0e"; - sha256 = "00nm2b8ik1yvaz5dp1b61jid841jv6zf8k5ma2nxbf1di1apqh0d"; + rev = "${version}"; + sha256 = "1akibhrmqsy0dlz9lq93508bhkh7r1l0aycbzy2x45a9gqxfdi4q"; }; buildInputs = [ cmake curl ]; @@ -15,9 +16,9 @@ stdenv.mkDerivation { meta = with stdenv.lib; { homepage = "http://josephp91.github.io/curlcpp/"; description = "Object oriented C++ wrapper for CURL"; - platforms = platforms.unix ; + platforms = platforms.unix; license = licenses.mit; - maintainers = [ maintainers.juliendehos ]; + maintainers = with maintainers; [ juliendehos rszibele ]; }; } diff --git a/pkgs/development/libraries/dbus/default.nix b/pkgs/development/libraries/dbus/default.nix index 6f7a845b809..f569f53861d 100644 --- a/pkgs/development/libraries/dbus/default.nix +++ b/pkgs/development/libraries/dbus/default.nix @@ -6,8 +6,8 @@ assert x11Support -> libX11 != null && libSM != null; let - version = "1.10.16"; - sha256 = "121kqkjsd3vgf8vca8364xl44qa5086h7qy5zs5f1l78ldpbmc57"; + version = "1.10.18"; + sha256 = "0jjirhw6xwz2ffmbg5kr79108l8i1bdaw7szc67n3qpkygaxsjb0"; self = stdenv.mkDerivation { name = "dbus-${version}"; diff --git a/pkgs/development/libraries/despotify/default.nix b/pkgs/development/libraries/despotify/default.nix deleted file mode 100644 index 43c8d18eb88..00000000000 --- a/pkgs/development/libraries/despotify/default.nix +++ /dev/null @@ -1,36 +0,0 @@ -{ - stdenv, fetchsvn, openssl, zlib, libvorbis, libpulseaudio, gstreamer, libao, - libtool, ncurses, glibc -}: - -stdenv.mkDerivation rec { - - name = "despotify-svn521"; - - src = fetchsvn { - url = "http://svn.code.sf.net/p/despotify/code"; - rev = "521"; - sha256 = "1vc453bv5ngkvaqkq7z5bj6x28m4kik59153jikcfah3k4qmxw21"; - }; - - buildInputs = [ - openssl zlib libvorbis libpulseaudio gstreamer libao libtool ncurses glibc - ]; - - configurePhase = "cd src"; - - installPhase = "make LDCONFIG=true INSTALL_PREFIX=$out install"; - - meta = { - description = "Open source Spotify client and library"; - longDescription = '' - despotify is a open source implementation of the Spotify API. This - package provides both a library and a few already quite useful, - proof-of-concept clients. - ''; - homepage = "http://despotify.se"; - license = stdenv.lib.licenses.bsd2; - platforms = stdenv.lib.platforms.linux; - }; - -} diff --git a/pkgs/development/libraries/eccodes/default.nix b/pkgs/development/libraries/eccodes/default.nix new file mode 100644 index 00000000000..2ba97af133e --- /dev/null +++ b/pkgs/development/libraries/eccodes/default.nix @@ -0,0 +1,52 @@ +{ fetchurl, stdenv +, cmake, netcdf, openjpeg, libpng, gfortran +, enablePython ? false, pythonPackages +, enablePosixThreads ? false +, enableOpenMPThreads ? false}: +with stdenv.lib; +stdenv.mkDerivation rec { + name = "eccodes-${version}"; + version = "2.2.0"; + + src = fetchurl { + url = https://software.ecmwf.int/wiki/download/attachments/45757960/eccodes-2.2.0-Source.tar.gz; + sha256 = "1hzl0akjfxphqivnaj2kg131w8ki80ba3872h0a45f4pchci4h8s"; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ netcdf + openjpeg + libpng + gfortran + ]; + propagatedBuildInputs = optionals enablePython [ + pythonPackages.python + pythonPackages.numpy + ]; + + cmakeFlags = [ "-DENABLE_PYTHON=${if enablePython then "ON" else "OFF"}" + "-DENABLE_PNG=ON" + "-DENABLE_ECCODES_THREADS=${if enablePosixThreads then "ON" else "OFF"}" + "-DENABLE_ECCODES_OMP_THREADS=${if enableOpenMPThreads then "ON" else "OFF"}" + ]; + + enableParallelBuilding = true; + + doCheck = true; + + # Only do tests that don't require downloading 120MB of testdata + checkPhase = stdenv.lib.optionalString (stdenv.isDarwin) '' + substituteInPlace "tests/include.sh" --replace "set -ea" "set -ea; export DYLD_LIBRARY_PATH=$(pwd)/lib" + '' + '' + ctest -R "eccodes_t_(definitions|calendar|unit_tests|md5|uerra|grib_2nd_order_numValues|julian)" -VV + ''; + + meta = { + homepage = "https://software.ecmwf.int/wiki/display/ECC/"; + license = licenses.asl20; + maintainers = with maintainers; [ knedlsepp ]; + platforms = platforms.unix; + description = "ECMWF library for reading and writing GRIB, BUFR and GTS abbreviated header"; + }; +} diff --git a/pkgs/development/libraries/exempi/default.nix b/pkgs/development/libraries/exempi/default.nix index 1453db8563f..ed6728482aa 100644 --- a/pkgs/development/libraries/exempi/default.nix +++ b/pkgs/development/libraries/exempi/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, expat, zlib, boost }: +{ stdenv, fetchurl, expat, zlib, boost, libiconv, darwin }: stdenv.mkDerivation rec { name = "exempi-2.4.2"; @@ -12,11 +12,12 @@ stdenv.mkDerivation rec { "--with-boost=${boost.dev}" ]; - buildInputs = [ expat zlib boost ]; + buildInputs = [ expat zlib boost ] + ++ stdenv.lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.CoreServices ]; meta = with stdenv.lib; { homepage = http://libopenraw.freedesktop.org/wiki/Exempi/; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; license = licenses.bsd3; }; } diff --git a/pkgs/development/libraries/farbfeld/default.nix b/pkgs/development/libraries/farbfeld/default.nix index d14de1938b9..3f309f06630 100644 --- a/pkgs/development/libraries/farbfeld/default.nix +++ b/pkgs/development/libraries/farbfeld/default.nix @@ -2,12 +2,12 @@ stdenv.mkDerivation rec { name = "farbfeld-${version}"; - version = "2"; + version = "3"; src = fetchgit { url = "http://git.suckless.org/farbfeld"; rev = "refs/tags/${version}"; - sha256 = "1rj6pqn50v6r7l3j7m872fgynxsh22zx863jg0jzmb4x6wx2m2qv"; + sha256 = "1k9cnw2zk9ywcn4hibf7wgi4czwyxhgjdmia6ghpw3wcz8vi71xl"; }; buildInputs = [ libpng libjpeg ]; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Suckless image format with conversion tools"; - license = licenses.mit; + license = licenses.isc; platforms = platforms.linux; maintainers = with maintainers; [ pSub ]; }; diff --git a/pkgs/development/libraries/ffmpeg-full/default.nix b/pkgs/development/libraries/ffmpeg-full/default.nix index 9a5c228ac82..bdd3b5cea50 100644 --- a/pkgs/development/libraries/ffmpeg-full/default.nix +++ b/pkgs/development/libraries/ffmpeg-full/default.nix @@ -14,10 +14,10 @@ , swscaleAlphaBuild ? true # Alpha channel support in swscale , hardcodedTablesBuild ? true # Hardcode decode tables instead of runtime generation , safeBitstreamReaderBuild ? true # Buffer boundary checking in bitreaders -, memalignHackBuild ? false # Emulate memalign , multithreadBuild ? true # Multithreading via pthreads/win32 threads , networkBuild ? true # Network support , pixelutilsBuild ? true # Pixel utils in libavutil +, enableLto ? false # build with link-time optimization /* * Program options */ @@ -120,7 +120,6 @@ #, vo-aacenc ? null # AAC encoder #, vo-amrwbenc ? null # AMR-WB encoder , wavpack ? null # Wavpack encoder -, x11grabExtlib ? false, libXext ? null, libXfixes ? null # X11 grabbing (legacy) , x264 ? null # H.264/AVC encoder , x265 ? null # H.265/HEVC encoder , xavs ? null # AVS encoder @@ -227,16 +226,15 @@ assert libxcbxfixesExtlib -> libxcb != null; assert libxcbshapeExtlib -> libxcb != null; assert openglExtlib -> mesa != null; assert opensslExtlib -> gnutls == null && openssl != null && nonfreeLicensing; -assert x11grabExtlib -> libX11 != null && libXv != null; assert nvenc -> nvidia-video-sdk != null && nonfreeLicensing; stdenv.mkDerivation rec { name = "ffmpeg-full-${version}"; - version = "3.2.4"; + version = "3.3"; src = fetchurl { url = "https://www.ffmpeg.org/releases/ffmpeg-${version}.tar.xz"; - sha256 = "0ymg1mkg1n0770gmjfqp79p5ijxq04smfrsrrxc8pjc0y0agyf3f"; + sha256 = "17anx7rnbi63if1ndr61836lf76dpn47n0y424hc48bj05y7z7jr"; }; patchPhase = ''patchShebangs . @@ -260,11 +258,11 @@ stdenv.mkDerivation rec { (if stdenv.cc.isClang then "--cc=clang" else null) (enableFeature smallBuild "small") (enableFeature runtimeCpuDetectBuild "runtime-cpudetect") + (enableFeature enableLto "lto") (enableFeature grayBuild "gray") (enableFeature swscaleAlphaBuild "swscale-alpha") (enableFeature hardcodedTablesBuild "hardcoded-tables") (enableFeature safeBitstreamReaderBuild "safe-bitstream-reader") - (enableFeature memalignHackBuild "memalign-hack") (if multithreadBuild then ( if isCygwin then "--disable-pthreads --enable-w32threads" @@ -377,7 +375,6 @@ stdenv.mkDerivation rec { #(enableFeature (vo-aacenc != null && version3Licensing) "libvo-aacenc") #(enableFeature (vo-amrwbenc != null && version3Licensing) "libvo-amrwbenc") (enableFeature (wavpack != null) "libwavpack") - (enableFeature (x11grabExtlib && gplLicensing) "x11grab") (enableFeature (x264 != null && gplLicensing) "libx264") (enableFeature (x265 != null && gplLicensing) "libx265") (enableFeature (xavs != null && gplLicensing) "libxavs") @@ -400,10 +397,9 @@ stdenv.mkDerivation rec { bzip2 celt fontconfig freetype frei0r fribidi game-music-emu gnutls gsm libjack2 ladspaH lame libass libbluray libbs2b libcaca libdc1394 libmodplug libogg libopus libssh libtheora libvdpau libvorbis libvpx libwebp libX11 - libxcb libXext libXfixes libXv lzma openal openjpeg_1 libpulseaudio rtmpdump + libxcb libXv lzma openal openjpeg_1 libpulseaudio rtmpdump samba SDL2 soxr speex vid-stab wavpack x264 x265 xavs xvidcore zeromq4 zlib ] ++ optional openglExtlib mesa - ++ optionals x11grabExtlib [ libXext libXfixes ] ++ optionals nonfreeLicensing [ fdk_aac openssl ] ++ optional ((isLinux || isFreeBSD) && libva != null) libva ++ optionals isLinux [ alsaLib libraw1394 libv4l ] diff --git a/pkgs/development/libraries/ffmpeg/3.1.nix b/pkgs/development/libraries/ffmpeg/3.1.nix deleted file mode 100644 index 8e79d1ad0e1..00000000000 --- a/pkgs/development/libraries/ffmpeg/3.1.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ stdenv, callPackage -# Darwin frameworks -, Cocoa, CoreMedia -, ... -}@args: - -callPackage ./generic.nix (args // rec { - version = "${branch}.7"; - branch = "3.1"; - sha256 = "0ldf484r3waslv0sjx3vcwlkfgh28bd1wqcj26snfhav7zkf10kl"; - darwinFrameworks = [ Cocoa CoreMedia ]; - patches = stdenv.lib.optional stdenv.isDarwin ./sdk_detection.patch; -}) diff --git a/pkgs/development/libraries/ffmpeg/3.2.nix b/pkgs/development/libraries/ffmpeg/3.2.nix deleted file mode 100644 index 17ed6fb0e4b..00000000000 --- a/pkgs/development/libraries/ffmpeg/3.2.nix +++ /dev/null @@ -1,13 +0,0 @@ -{ stdenv, callPackage -# Darwin frameworks -, Cocoa, CoreMedia -, ... -}@args: - -callPackage ./generic.nix (args // rec { - version = "${branch}.4"; - branch = "3.2"; - sha256 = "194n8hwmz2rpgh2rz8bc3mnxjyj3jh090mqp7k76msg9la9kbyn0"; - darwinFrameworks = [ Cocoa CoreMedia ]; - patches = stdenv.lib.optional stdenv.isDarwin ./sdk_detection.patch; -}) diff --git a/pkgs/development/libraries/ffmpeg/3.3.nix b/pkgs/development/libraries/ffmpeg/3.3.nix new file mode 100644 index 00000000000..03bb9d44dda --- /dev/null +++ b/pkgs/development/libraries/ffmpeg/3.3.nix @@ -0,0 +1,12 @@ +{ stdenv, callPackage +# Darwin frameworks +, Cocoa, CoreMedia +, ... +}@args: + +callPackage ./generic.nix (args // rec { + version = "${branch}"; + branch = "3.3"; + sha256 = "1p3brx0qa3i3569zlmcmpbxf17q73nrmbx2vp39s8h77r53qdq11"; + darwinFrameworks = [ Cocoa CoreMedia ]; +}) diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix index 0ac82f98a24..57ac086368f 100644 --- a/pkgs/development/libraries/ffmpeg/generic.nix +++ b/pkgs/development/libraries/ffmpeg/generic.nix @@ -6,7 +6,7 @@ # Build options , runtimeCpuDetectBuild ? true # Detect CPU capabilities at runtime , multithreadBuild ? true # Multithreading via pthreads/win32 threads -, sdlSupport ? !stdenv.isArm, SDL ? null +, sdlSupport ? !stdenv.isArm, SDL ? null, SDL2 ? null , vdpauSupport ? !stdenv.isArm, libvdpau ? null # Developer options , debugDeveloper ? false @@ -55,6 +55,8 @@ let # Disable dependency that needs fixes before it will work on Darwin or Arm disDarwinOrArmFix = origArg: minVer: fixArg: if ((isDarwin || isArm) && reqMin minVer) then fixArg else origArg; + + vaapiSupport = reqMin "0.6" && ((isLinux || isFreeBSD) && !isArm); in assert openglSupport -> mesa != null; @@ -121,14 +123,14 @@ stdenv.mkDerivation rec { "--enable-libmp3lame" (ifMinVer "1.2" "--enable-iconv") "--enable-libtheora" - (ifMinVer "0.6" (enableFeature (isLinux || isFreeBSD) "vaapi")) + (ifMinVer "0.6" (enableFeature vaapiSupport "vaapi")) "--enable-vdpau" "--enable-libvorbis" (disDarwinOrArmFix (ifMinVer "0.6" "--enable-libvpx") "0.6" "--disable-libvpx") (ifMinVer "2.4" "--enable-lzma") (ifMinVer "2.2" (enableFeature openglSupport "opengl")) (disDarwinOrArmFix (ifMinVer "0.9" "--enable-libpulse") "0.9" "--disable-libpulse") - (ifMinVer "2.5" (if sdlSupport then "--enable-sdl" else "")) # Only configurable since 2.5, auto detected before then + (ifMinVer "2.5" (if sdlSupport && reqMin "3.2" then "--enable-sdl2" else if sdlSupport then "--enable-sdl" else null)) # autodetected before 2.5, SDL1 support removed in 3.2 for SDL2 (ifMinVer "1.2" "--enable-libsoxr") "--enable-libx264" "--enable-libxvid" @@ -155,7 +157,7 @@ stdenv.mkDerivation rec { ++ optional isLinux alsaLib ++ optionals isDarwin darwinFrameworks ++ optional vdpauSupport libvdpau - ++ optional sdlSupport SDL; + ++ optional sdlSupport (if reqMin "3.2" then SDL2 else SDL); enableParallelBuilding = true; @@ -197,8 +199,7 @@ stdenv.mkDerivation rec { installFlags = [ "install-man" ]; passthru = { - vaapiSupport = if reqMin "0.6" && ((isLinux || isFreeBSD) && !isArm) then true else false; - inherit vdpauSupport; + inherit vaapiSupport vdpauSupport; }; meta = with stdenv.lib; { diff --git a/pkgs/development/libraries/ffmpeg/sdk_detection.patch b/pkgs/development/libraries/ffmpeg/sdk_detection.patch deleted file mode 100644 index f0b8789c66b..00000000000 --- a/pkgs/development/libraries/ffmpeg/sdk_detection.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/libavcodec/audiotoolboxdec.c b/libavcodec/audiotoolboxdec.c ---- a/libavcodec/audiotoolboxdec.c -+++ b/libavcodec/audiotoolboxdec.c -@@ -32,7 +32,7 @@ - #include "libavutil/opt.h" - #include "libavutil/log.h" - --#ifndef __MAC_10_11 -+#if __MAC_OS_X_VERSION_MIN_REQUIRED < 101100 - #define kAudioFormatEnhancedAC3 'ec-3' - #endif - diff --git a/pkgs/development/libraries/fltk/default.nix b/pkgs/development/libraries/fltk/default.nix index 6f906d52502..a1e4bb8274e 100644 --- a/pkgs/development/libraries/fltk/default.nix +++ b/pkgs/development/libraries/fltk/default.nix @@ -6,21 +6,15 @@ let inherit (composableDerivation) edf; in -let version = "1.3.3"; in +let version = "1.3.4"; in composableDerivation.composableDerivation {} { name = "fltk-${version}"; src = fetchurl { url = "http://fltk.org/pub/fltk/${version}/fltk-${version}-source.tar.gz"; - sha256 = "15qd7lkz5d5ynz70xhxhigpz3wns39v9xcf7ggkl0792syc8sfgq"; + sha256 = "13y57pnayrkfzm8azdfvysm8b77ysac8zhhdsh8kxmb0x3203ay8"; }; - # http://www.fltk.org/str.php?L3156 - postPatch = '' - substituteInPlace FL/x.H \ - --replace 'class Fl_XFont_On_Demand' 'class FL_EXPORT Fl_XFont_On_Demand' - ''; - patches = stdenv.lib.optionals stdenv.isDarwin [ ./nsosv.patch ]; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/gdal/default.nix b/pkgs/development/libraries/gdal/default.nix index 9805bc17c44..7e296fb9d06 100644 --- a/pkgs/development/libraries/gdal/default.nix +++ b/pkgs/development/libraries/gdal/default.nix @@ -1,9 +1,11 @@ { stdenv, fetchurl, composableDerivation, unzip, libjpeg, libtiff, zlib , postgresql, mysql, libgeotiff, pythonPackages, proj, geos, openssl -, libpng -, netcdf, hdf5 , curl -, netcdfSupport ? true - }: +, libpng, sqlite, libspatialite, poppler +, libiconv +, netcdfSupport ? true, netcdf, hdf5 , curl +}: + +with stdenv.lib; composableDerivation.composableDerivation {} (fixed: rec { version = "2.1.3"; @@ -14,9 +16,11 @@ composableDerivation.composableDerivation {} (fixed: rec { sha256 = "0jh7filpf5dk5iz5acj7y3y49ihnzqypxckdlj0sjigbqq6hlsmf"; }; - buildInputs = [ unzip libjpeg libtiff libpng proj openssl ] + buildInputs = [ unzip libjpeg libtiff libpng proj openssl sqlite + libspatialite poppler ] ++ (with pythonPackages; [ python numpy wrapPython ]) - ++ (stdenv.lib.optionals netcdfSupport [ netcdf hdf5 curl ]); + ++ stdenv.lib.optional stdenv.isDarwin libiconv + ++ stdenv.lib.optionals netcdfSupport [ netcdf hdf5 curl ]; hardeningDisable = [ "format" ]; @@ -27,11 +31,13 @@ composableDerivation.composableDerivation {} (fixed: rec { "--with-jpeg=${libjpeg.dev}" "--with-libtiff=${libtiff.dev}" # optional (without largetiff support) "--with-png=${libpng.dev}" # optional + "--with-poppler=${poppler.dev}" # optional "--with-libz=${zlib.dev}" # optional - "--with-pg=${postgresql}/bin/pg_config" "--with-mysql=${mysql.lib.dev}/bin/mysql_config" "--with-geotiff=${libgeotiff}" + "--with-sqlite3=${sqlite.dev}" + "--with-spatialite=${libspatialite}" "--with-python" # optional "--with-static-proj4=${proj}" # optional "--with-geos=${geos}/bin/geos-config"# optional diff --git a/pkgs/development/libraries/glfw/3.x.nix b/pkgs/development/libraries/glfw/3.x.nix index 1500718c737..ec3c2f5569d 100644 --- a/pkgs/development/libraries/glfw/3.x.nix +++ b/pkgs/development/libraries/glfw/3.x.nix @@ -1,6 +1,6 @@ { stdenv, fetchFromGitHub, cmake, mesa, libXrandr, libXi, libXxf86vm, libXfixes, xlibsWrapper , libXinerama, libXcursor -, darwin +, darwin, fixDarwinDylibNames }: stdenv.mkDerivation rec { @@ -19,15 +19,15 @@ stdenv.mkDerivation rec { buildInputs = [ cmake mesa libXrandr libXi libXxf86vm libXfixes xlibsWrapper libXinerama libXcursor - ] ++ stdenv.lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel ]); + ] ++ stdenv.lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel fixDarwinDylibNames ]); cmakeFlags = "-DBUILD_SHARED_LIBS=ON"; - meta = with stdenv.lib; { + meta = with stdenv.lib; { description = "Multi-platform library for creating OpenGL contexts and managing input, including keyboard, mouse, joystick and time"; homepage = "http://www.glfw.org/"; license = licenses.zlib; maintainers = with maintainers; [ marcweber ]; - platforms = platforms.linux; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index 5d8d98af8d3..96175d04a4e 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -42,8 +42,8 @@ let ln -sr -t "''${!outputInclude}/include/" "''${!outputInclude}"/lib/*/include/* 2>/dev/null || true ''; - ver_maj = "2.50"; - ver_min = "3"; + ver_maj = "2.52"; + ver_min = "1"; in stdenv.mkDerivation rec { @@ -51,7 +51,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/glib/${ver_maj}/${name}.tar.xz"; - sha256 = "82ee94bf4c01459b6b00cb9db0545c2237921e3060c0b74cff13fbc020cfd999"; + sha256 = "948c26b817f2d77e2a6cdd5082c60a51bf5dea854890286a1d5d4ccde5ce586f"; }; patches = optional stdenv.isDarwin ./darwin-compilation.patch ++ optional doCheck ./skip-timer-test.patch; diff --git a/pkgs/development/libraries/glibc/common.nix b/pkgs/development/libraries/glibc/common.nix index 66510919e34..ec9f94d00d8 100644 --- a/pkgs/development/libraries/glibc/common.nix +++ b/pkgs/development/libraries/glibc/common.nix @@ -120,14 +120,6 @@ stdenv.mkDerivation ({ # prevent a retained dependency on the bootstrap tools in the stdenv-linux # bootstrap. BASH_SHELL = "/bin/sh"; - - # Workaround for this bug: - # http://sourceware.org/bugzilla/show_bug.cgi?id=411 - # I.e. when gcc is compiled with --with-arch=i686, then the - # preprocessor symbol `__i686' will be defined to `1'. This causes - # the symbol __i686.get_pc_thunk.dx to be mangled. - NIX_CFLAGS_COMPILE = lib.optionalString (stdenv.system == "i686-linux") "-U__i686" - + " -Wno-error=strict-prototypes"; } # Remove the `gccCross' attribute so that the *native* glibc store path diff --git a/pkgs/development/libraries/gmp/6.x.nix b/pkgs/development/libraries/gmp/6.x.nix index e30c15e629e..92dd602fc4d 100644 --- a/pkgs/development/libraries/gmp/6.x.nix +++ b/pkgs/development/libraries/gmp/6.x.nix @@ -1,4 +1,7 @@ -{ stdenv, fetchurl, m4, cxx ? true, withStatic ? false }: +{ stdenv, fetchurl, m4, cxx ? true +, buildPackages +, buildPlatform, hostPlatform +, withStatic ? false }: let inherit (stdenv.lib) optional optionalString; in @@ -16,7 +19,8 @@ let self = stdenv.mkDerivation rec { outputs = [ "out" "dev" "info" ]; passthru.static = self.out; - nativeBuildInputs = [ m4 ]; + nativeBuildInputs = [ m4 ] + ++ stdenv.lib.optional (buildPlatform != hostPlatform) buildPackages.stdenv.cc; configureFlags = # Build a "fat binary", with routines for several sub-architectures @@ -39,7 +43,7 @@ let self = stdenv.mkDerivation rec { configureFlagsArray+=("--build=$(./configfsf.guess)") ''; - doCheck = true; + doCheck = buildPlatform == hostPlatform; dontDisableStatic = withStatic; diff --git a/pkgs/development/libraries/gstreamer/bad/default.nix b/pkgs/development/libraries/gstreamer/bad/default.nix index 1125bb7bb8a..7ca2ddd0ce2 100644 --- a/pkgs/development/libraries/gstreamer/bad/default.nix +++ b/pkgs/development/libraries/gstreamer/bad/default.nix @@ -5,7 +5,7 @@ , openjpeg, libopus, librsvg , wildmidi, fluidsynth, libvdpau, wayland , libwebp, xvidcore, gnutls, mjpegtools -, mesa, libintlOrEmpty +, mesa, libintlOrEmpty, libgme }: assert faacSupport -> faac != null; @@ -45,7 +45,7 @@ stdenv.mkDerivation rec { openjpeg libopus librsvg fluidsynth libvdpau libwebp xvidcore gnutls mesa - mjpegtools + mjpegtools libgme ] ++ libintlOrEmpty ++ optional faacSupport faac diff --git a/pkgs/development/libraries/gstreamer/good/default.nix b/pkgs/development/libraries/gstreamer/good/default.nix index 4d9582d1381..c28cfca31c5 100644 --- a/pkgs/development/libraries/gstreamer/good/default.nix +++ b/pkgs/development/libraries/gstreamer/good/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { code, LGPL or LGPL-compatible for the supporting library). ''; license = licenses.lgpl2Plus; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; src = fetchurl { diff --git a/pkgs/development/libraries/gtk+/2.x.nix b/pkgs/development/libraries/gtk+/2.x.nix index 306e2db29ce..f6e718d82e9 100644 --- a/pkgs/development/libraries/gtk+/2.x.nix +++ b/pkgs/development/libraries/gtk+/2.x.nix @@ -30,7 +30,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ setupHook perl pkgconfig gettext ]; - patches = [ ./2.0-immodules.cache.patch ]; + patches = [ ./2.0-immodules.cache.patch ./gtk2-theme-paths.patch ]; propagatedBuildInputs = with xorg; [ glib cairo pango gdk_pixbuf atk ] diff --git a/pkgs/development/libraries/gtk+/3.x.nix b/pkgs/development/libraries/gtk+/3.x.nix index aa8957b2c7d..f27cccfa27a 100644 --- a/pkgs/development/libraries/gtk+/3.x.nix +++ b/pkgs/development/libraries/gtk+/3.x.nix @@ -13,7 +13,7 @@ with stdenv.lib; let ver_maj = "3.22"; - ver_min = "11"; + ver_min = "12"; version = "${ver_maj}.${ver_min}"; in stdenv.mkDerivation rec { @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/gtk+/${ver_maj}/gtk+-${version}.tar.xz"; - sha256 = "db440670cb6f3c098b076df3735fbc4e69359bd605385e87c90ee48344a804ca"; + sha256 = "84fae0cefb6a11ee2b4e86b8ac42fe46a3d30b4ad16661d5fc51e8ae03e2a98c"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/gtk+/gtk2-theme-paths.patch b/pkgs/development/libraries/gtk+/gtk2-theme-paths.patch new file mode 100644 index 00000000000..edd69b07807 --- /dev/null +++ b/pkgs/development/libraries/gtk+/gtk2-theme-paths.patch @@ -0,0 +1,40 @@ +Subject: [PATCHv2] gtk: Patch GTK+ to look for themes in profiles. +To: guix-devel@gnu.org +Date: Sun, 13 Mar 2016 15:17:37 +1100 +Url: https://lists.gnu.org/archive/html/guix-devel/2016-03/msg00492.html + +diff -Naur gtk+-2.24.28.new/gtk/gtkrc.c gtk+-2.24.28/gtk/gtkrc.c +--- gtk+-2.24.28.new/gtk/gtkrc.c 2016-03-13 10:31:14.413644362 +1100 ++++ gtk+-2.24.28/gtk/gtkrc.c 2016-03-13 12:51:34.723398423 +1100 +@@ -808,6 +808,8 @@ + gchar *path = NULL; + const gchar *home_dir; + gchar *subpath; ++ const gchar * const *xdg_data_dirs; ++ gint i; + + if (type) + subpath = g_strconcat ("gtk-2.0-", type, +@@ -830,6 +832,22 @@ + } + + if (!path) ++ { ++ xdg_data_dirs = g_get_system_data_dirs (); ++ for (i = 0; xdg_data_dirs[i]; i++) ++ { ++ path = g_build_filename (xdg_data_dirs[i], "themes", name, subpath, NULL); ++ if (g_file_test (path, G_FILE_TEST_EXISTS)) ++ break; ++ else ++ { ++ g_free (path); ++ path = NULL; ++ } ++ } ++ } ++ ++ if (!path) + { + gchar *theme_dir = gtk_rc_get_theme_dir (); + path = g_build_filename (theme_dir, name, subpath, NULL); diff --git a/pkgs/development/libraries/harfbuzz/default.nix b/pkgs/development/libraries/harfbuzz/default.nix index e8cd4f13ece..81b3c558f0b 100644 --- a/pkgs/development/libraries/harfbuzz/default.nix +++ b/pkgs/development/libraries/harfbuzz/default.nix @@ -5,7 +5,7 @@ }: let - version = "1.4.4"; + version = "1.4.5"; inherit (stdenv.lib) optional optionals optionalString; in @@ -14,7 +14,7 @@ stdenv.mkDerivation { src = fetchurl { url = "http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-${version}.tar.bz2"; - sha256 = "0mfj37qr8fw9mzsvk4296fq8vzq909mwlkl2xrjfrfvc8z5gilim"; + sha256 = "d0e05438165884f21658154c709075feaf98c93ee5c694b951533ac425a9a711"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/hpx/default.nix b/pkgs/development/libraries/hpx/default.nix new file mode 100644 index 00000000000..452a159bb28 --- /dev/null +++ b/pkgs/development/libraries/hpx/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchFromGitHub, boost, cmake, hwloc, gperftools, pkgconfig, python }: + +stdenv.mkDerivation rec { + name = "hpx-${version}"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "STEllAR-GROUP"; + repo = "hpx"; + rev = "${version}"; + sha256 = "0k79gw4c0v4i7ps1hw6x4m7svxbfml5xm6ly7p00dvg7z9521zsk"; + }; + + buildInputs = [ boost hwloc gperftools ]; + nativeBuildInputs = [ cmake pkgconfig python ]; + + enableParallelBuilding = true; + + meta = { + description = "C++ standard library for concurrency and parallelism"; + homepage = "https://github.com/STEllAR-GROUP/hpx"; + license = stdenv.lib.licenses.boost; + platforms = [ "x86_64-linux" ]; # stdenv.lib.platforms.linux; + maintainers = with stdenv.lib.maintainers; [ bobakker ]; + }; +} diff --git a/pkgs/development/libraries/hunspell/default.nix b/pkgs/development/libraries/hunspell/default.nix index c33434d202f..952050f0e8f 100644 --- a/pkgs/development/libraries/hunspell/default.nix +++ b/pkgs/development/libraries/hunspell/default.nix @@ -1,16 +1,21 @@ -{ stdenv, fetchurl, ncurses, readline }: +{ stdenv, fetchurl, ncurses, readline, autoreconfHook }: stdenv.mkDerivation rec { - name = "hunspell-1.3.3"; + version = "1.6.1"; + name = "hunspell-${version}"; src = fetchurl { - url = "mirror://sourceforge/hunspell/${name}.tar.gz"; - sha256 = "0v14ff9s37vkh45diaddndcrj0hmn67arh8xh8k79q9c1vgc1cm7"; + url = "https://github.com/hunspell/hunspell/archive/v${version}.tar.gz"; + sha256 = "0j9c20sj7bgd6f77193g1ihy8w905byk2gdhdc0r9dsh7irr7x9h"; }; outputs = [ "bin" "dev" "out" "man" ]; buildInputs = [ ncurses readline ]; + nativeBuildInputs = [ autoreconfHook ]; + + autoreconfFlags = "-vfi"; + configureFlags = [ "--with-ui" "--with-readline" ]; hardeningDisable = [ "format" ]; diff --git a/pkgs/development/libraries/imlib2/default.nix b/pkgs/development/libraries/imlib2/default.nix index a6ad33d842c..8c66dcec161 100644 --- a/pkgs/development/libraries/imlib2/default.nix +++ b/pkgs/development/libraries/imlib2/default.nix @@ -5,11 +5,11 @@ with stdenv.lib; stdenv.mkDerivation rec { - name = "imlib2-1.4.9"; + name = "imlib2-1.4.10"; src = fetchurl { url = "mirror://sourceforge/enlightenment/${name}.tar.bz2"; - sha256 = "08809xxk2555yj6glixzw9a0x3x8cx55imd89kj3r0h152bn8a3x"; + sha256 = "0wm2q2xlkbm71k7mw2jyzbxgzylrkcj5yh6nq58w5gybhp98qs9z"; }; buildInputs = [ libjpeg libtiff giflib libpng bzip2 freetype ] @@ -46,6 +46,7 @@ stdenv.mkDerivation rec { easily, without sacrificing speed. ''; + homepage = http://docs.enlightenment.org/api/imlib2/html; license = licenses.free; platforms = platforms.unix; maintainers = with maintainers; [ spwhitt ]; diff --git a/pkgs/development/libraries/json-c/default.nix b/pkgs/development/libraries/json-c/default.nix index da12b732d00..b8c72d9669e 100644 --- a/pkgs/development/libraries/json-c/default.nix +++ b/pkgs/development/libraries/json-c/default.nix @@ -1,14 +1,12 @@ { stdenv, fetchurl, autoreconfHook }: stdenv.mkDerivation rec { - name = "json-c-0.12"; + name = "json-c-0.12.1"; src = fetchurl { url = "https://s3.amazonaws.com/json-c_releases/releases/${name}-nodoc.tar.gz"; - sha256 = "0dgvjjyb9xva63l6sy70sdch2w4ryvacdmfd3fg2f2v13lqx5mkg"; + sha256 = "148jkvpnxmg1fwwigp0nq9qbd5vzpnmgiw3y34w7k6fymalpsqas"; }; - patches = [ ./unused-variable.patch ]; - outputs = [ "out" "dev" ]; nativeBuildInputs = [ autoreconfHook ]; # won't configure without it, no idea why diff --git a/pkgs/development/libraries/json-c/unused-variable.patch b/pkgs/development/libraries/json-c/unused-variable.patch deleted file mode 100644 index 1726234c526..00000000000 --- a/pkgs/development/libraries/json-c/unused-variable.patch +++ /dev/null @@ -1,18 +0,0 @@ -See https://groups.google.com/forum/#!topic/json-c/TYodemkG338 -diff --git a/json_tokener.c b/json_tokener.c -index 19de8ef..32bc8af 100644 ---- a/json_tokener.c -+++ b/json_tokener.c -@@ -352,12 +352,10 @@ struct json_object* json_tokener_parse_ex(struct json_tokener *tok, - - case json_tokener_state_inf: /* aka starts with 'i' */ - { -- int size; - int size_inf; - int is_negative = 0; - - printbuf_memappend_fast(tok->pb, &c, 1); -- size = json_min(tok->st_pos+1, json_null_str_len); - size_inf = json_min(tok->st_pos+1, json_inf_str_len); - char *infbuf = tok->pb->buf; - if (*infbuf == '-') diff --git a/pkgs/development/libraries/kde-frameworks/default.nix b/pkgs/development/libraries/kde-frameworks/default.nix index 2906dc78886..221fba628ba 100644 --- a/pkgs/development/libraries/kde-frameworks/default.nix +++ b/pkgs/development/libraries/kde-frameworks/default.nix @@ -96,7 +96,7 @@ let kwallet = callPackage ./kwallet.nix {}; kwayland = callPackage ./kwayland.nix {}; kwidgetsaddons = callPackage ./kwidgetsaddons.nix {}; - kwindowsystem = callPackage ./kwindowsystem.nix {}; + kwindowsystem = callPackage ./kwindowsystem {}; kxmlgui = callPackage ./kxmlgui.nix {}; kxmlrpcclient = callPackage ./kxmlrpcclient.nix {}; modemmanager-qt = callPackage ./modemmanager-qt.nix {}; diff --git a/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix index b2e3a371e96..f8a774b6855 100644 --- a/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix +++ b/pkgs/development/libraries/kde-frameworks/extra-cmake-modules/default.nix @@ -12,7 +12,7 @@ kdeFramework { setupHook = ./setup-hook.sh; meta = with lib; { - platforms = lib.platforms.linux; + platforms = platforms.linux ++ platforms.darwin; homepage = "http://www.kde.org"; license = licenses.bsd2; maintainers = [ maintainers.ttuegel ]; diff --git a/pkgs/development/libraries/kde-frameworks/fetch.sh b/pkgs/development/libraries/kde-frameworks/fetch.sh index 7343b408dff..361426d1de6 100644 --- a/pkgs/development/libraries/kde-frameworks/fetch.sh +++ b/pkgs/development/libraries/kde-frameworks/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( http://download.kde.org/stable/frameworks/5.32/ -A '*.tar.xz' ) +WGET_ARGS=( http://download.kde.org/stable/frameworks/5.33/ -A '*.tar.xz' ) diff --git a/pkgs/development/libraries/kde-frameworks/kinit/default.nix b/pkgs/development/libraries/kde-frameworks/kinit/default.nix index b965f761e92..f5cfa166e91 100644 --- a/pkgs/development/libraries/kde-frameworks/kinit/default.nix +++ b/pkgs/development/libraries/kde-frameworks/kinit/default.nix @@ -1,9 +1,12 @@ { kdeFramework, lib, copyPathsToStore, extra-cmake-modules, kdoctools, - kconfig, kcrash, ki18n, kio, kservice, kwindowsystem + kconfig, kcrash, ki18n, kio, kparts, kservice, kwindowsystem, plasma-framework }: +let + inherit (lib) getLib; +in kdeFramework { name = "kinit"; meta = { maintainers = [ lib.maintainers.ttuegel ]; }; @@ -12,4 +15,9 @@ kdeFramework { kconfig kcrash ki18n kio kservice kwindowsystem ]; patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); + NIX_CFLAGS_COMPILE = [ + ''-DNIXPKGS_KF5_KIOCORE="${getLib kio}/lib/libKF5KIOCore.so.5"'' + ''-DNIXPKGS_KF5_PARTS="${getLib kparts}/lib/libKF5Parts.so.5"'' + ''-DNIXPKGS_KF5_PLASMA="${getLib plasma-framework}/lib/libKF5Plasma.so.5"'' + ]; } diff --git a/pkgs/development/libraries/kde-frameworks/kinit/kdeinit-extra_libs.patch b/pkgs/development/libraries/kde-frameworks/kinit/kdeinit-extra_libs.patch new file mode 100644 index 00000000000..75e632d4129 --- /dev/null +++ b/pkgs/development/libraries/kde-frameworks/kinit/kdeinit-extra_libs.patch @@ -0,0 +1,49 @@ +Index: kinit-5.32.0/src/kdeinit/kinit.cpp +=================================================================== +--- kinit-5.32.0.orig/src/kdeinit/kinit.cpp ++++ kinit-5.32.0/src/kdeinit/kinit.cpp +@@ -96,11 +96,9 @@ static const char *extra_libs[] = { + "libKF5Parts.5.dylib", + "libKF5Plasma.5.dylib" + #else +- "libKF5KIOCore.so.5", +- "libKF5Parts.so.5", +-//#ifdef __KDE_HAVE_GCC_VISIBILITY // Removed for KF5, we'll see. +- "libKF5Plasma.so.5" +-//#endif ++ NIXPKGS_KF5_KIOCORE, ++ NIXPKGS_KF5_PARTS, ++ NIXPKGS_KF5_PLASMA + #endif + }; + #endif +@@ -1533,20 +1531,6 @@ static int initXconnection() + } + #endif + +-#ifndef Q_OS_OSX +-// Find a shared lib in the lib dir, e.g. libkio.so. +-// Completely unrelated to plugins. +-static QString findSharedLib(const QString &lib) +-{ +- QString path = QFile::decodeName(CMAKE_INSTALL_PREFIX "/" LIB_INSTALL_DIR "/") + lib; +- if (QFile::exists(path)) { +- return path; +- } +- // We could also look in LD_LIBRARY_PATH, but really, who installs the main libs in different prefixes? +- return QString(); +-} +-#endif +- + extern "C" { + + static void secondary_child_handler(int) +@@ -1692,7 +1676,7 @@ int main(int argc, char **argv) + if (!d.suicide && qEnvironmentVariableIsEmpty("KDE_IS_PRELINKED")) { + const int extrasCount = sizeof(extra_libs) / sizeof(extra_libs[0]); + for (int i = 0; i < extrasCount; i++) { +- const QString extra = findSharedLib(QString::fromLatin1(extra_libs[i])); ++ const QString extra = QString::fromLatin1(extra_libs[i]); + if (!extra.isEmpty()) { + QLibrary l(extra); + l.setLoadHints(QLibrary::ExportExternalSymbolsHint); diff --git a/pkgs/development/libraries/kde-frameworks/kinit/kinit-libpath.patch b/pkgs/development/libraries/kde-frameworks/kinit/kinit-libpath.patch index a5c76fca248..b949723fb54 100644 --- a/pkgs/development/libraries/kde-frameworks/kinit/kinit-libpath.patch +++ b/pkgs/development/libraries/kde-frameworks/kinit/kinit-libpath.patch @@ -1,8 +1,8 @@ -Index: kinit-5.24.0/src/kdeinit/kinit.cpp +Index: kinit-5.32.0/src/kdeinit/kinit.cpp =================================================================== ---- kinit-5.24.0.orig/src/kdeinit/kinit.cpp -+++ kinit-5.24.0/src/kdeinit/kinit.cpp -@@ -672,19 +672,16 @@ static pid_t launch(int argc, const char +--- kinit-5.32.0.orig/src/kdeinit/kinit.cpp ++++ kinit-5.32.0/src/kdeinit/kinit.cpp +@@ -623,19 +623,15 @@ static pid_t launch(int argc, const char if (!libpath.isEmpty()) { if (libpath_relative) { @@ -23,10 +23,9 @@ Index: kinit-5.24.0/src/kdeinit/kinit.cpp + QByteArrayList profiles = qgetenv("NIX_PROFILES").split(' '); + // Reverse the profile list. + std::reverse(profiles.begin(), profiles.end()); -+ const QString libdir = QString::fromLatin1("/lib/"); -+ Q_FOREACH (const QByteArray &profile, profiles) { ++ for (const QByteArray &profile: profiles) { + if (!profile.isEmpty()) { -+ l.setFileName(QFile::decodeName(profile) + libdir + libpath); ++ l.setFileName(QFile::decodeName(profile) + QStringLiteral("/lib/") + libpath); + if (l.load()) break; + } } diff --git a/pkgs/development/libraries/kde-frameworks/kinit/series b/pkgs/development/libraries/kde-frameworks/kinit/series index 576b8a935bf..9195a4e8e6b 100644 --- a/pkgs/development/libraries/kde-frameworks/kinit/series +++ b/pkgs/development/libraries/kde-frameworks/kinit/series @@ -1,2 +1,3 @@ kinit-libpath.patch start_kdeinit-path.patch +kdeinit-extra_libs.patch diff --git a/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix b/pkgs/development/libraries/kde-frameworks/kwindowsystem/default.nix index 4bfd813ff93..8a91bdbac52 100644 --- a/pkgs/development/libraries/kde-frameworks/kwindowsystem.nix +++ b/pkgs/development/libraries/kde-frameworks/kwindowsystem/default.nix @@ -1,5 +1,5 @@ { - kdeFramework, lib, + kdeFramework, lib, copyPathsToStore, extra-cmake-modules, qtbase, qttools, qtx11extras }: @@ -12,4 +12,8 @@ kdeFramework { }; nativeBuildInputs = [ extra-cmake-modules qttools ]; propagatedBuildInputs = [ qtx11extras ]; + patches = copyPathsToStore (lib.readPathsFromFile ./. ./series); + preConfigure = '' + NIX_CFLAGS_COMPILE+=" -DNIXPKGS_QT_PLUGIN_PATH=\"$out/lib/qt5/plugins\"" + ''; } diff --git a/pkgs/development/libraries/kde-frameworks/kwindowsystem/platform-plugins-path.patch b/pkgs/development/libraries/kde-frameworks/kwindowsystem/platform-plugins-path.patch new file mode 100644 index 00000000000..ed24897d342 --- /dev/null +++ b/pkgs/development/libraries/kde-frameworks/kwindowsystem/platform-plugins-path.patch @@ -0,0 +1,22 @@ +Index: kwindowsystem-5.32.0/src/pluginwrapper.cpp +=================================================================== +--- kwindowsystem-5.32.0.orig/src/pluginwrapper.cpp ++++ kwindowsystem-5.32.0/src/pluginwrapper.cpp +@@ -37,14 +37,9 @@ Q_GLOBAL_STATIC(KWindowSystemPluginWrapp + static QStringList pluginCandidates() + { + QStringList ret; +- foreach (const QString &path, QCoreApplication::libraryPaths()) { +- QDir pluginDir(path + QLatin1Literal("/kf5/org.kde.kwindowsystem.platforms")); +- if (!pluginDir.exists()) { +- continue; +- } +- foreach (const QString &entry, pluginDir.entryList(QDir::Files | QDir::NoDotAndDotDot)) { +- ret << pluginDir.absoluteFilePath(entry); +- } ++ QDir pluginDir(QStringLiteral(NIXPKGS_QT_PLUGIN_PATH) + QLatin1Literal("/kf5/org.kde.kwindowsystem.platforms")); ++ foreach (const QString &entry, pluginDir.entryList(QDir::Files | QDir::NoDotAndDotDot)) { ++ ret << pluginDir.absoluteFilePath(entry); + } + return ret; + } diff --git a/pkgs/development/libraries/kde-frameworks/kwindowsystem/series b/pkgs/development/libraries/kde-frameworks/kwindowsystem/series new file mode 100644 index 00000000000..2cd02056ff8 --- /dev/null +++ b/pkgs/development/libraries/kde-frameworks/kwindowsystem/series @@ -0,0 +1 @@ +platform-plugins-path.patch diff --git a/pkgs/development/libraries/kde-frameworks/srcs.nix b/pkgs/development/libraries/kde-frameworks/srcs.nix index 4b902d4d57e..ebcc4fc7c38 100644 --- a/pkgs/development/libraries/kde-frameworks/srcs.nix +++ b/pkgs/development/libraries/kde-frameworks/srcs.nix @@ -3,595 +3,595 @@ { attica = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/attica-5.32.0.tar.xz"; - sha256 = "16vl3gpwqcvfms82grv1bvqlxj085bqssv5ixjx007826pd8qhp5"; - name = "attica-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/attica-5.33.0.tar.xz"; + sha256 = "1dr5yhg0cy4b6k91mk6w090zjizgxaa808h799m14jqzgj63z5d6"; + name = "attica-5.33.0.tar.xz"; }; }; baloo = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/baloo-5.32.0.tar.xz"; - sha256 = "0a4qwinkp4gmcbx4j0qxbj5qb40h7594s39za7sc7bymadicasy1"; - name = "baloo-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/baloo-5.33.0.tar.xz"; + sha256 = "174my99i5mggab98l38y2bk27xp25mpz58rl8rhnb3wsbgxcx7iz"; + name = "baloo-5.33.0.tar.xz"; }; }; bluez-qt = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/bluez-qt-5.32.0.tar.xz"; - sha256 = "0pl6cp0rgjkh7d06ik35rw7qd96j5sh2flgjx4vi21zl5vf3vgyh"; - name = "bluez-qt-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/bluez-qt-5.33.0.tar.xz"; + sha256 = "0cpkdv4k68f0rcg3j91418i59dmc94qlnv3xk1chq0fdi0cssrri"; + name = "bluez-qt-5.33.0.tar.xz"; }; }; breeze-icons = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/breeze-icons-5.32.0.tar.xz"; - sha256 = "1n51kahzk09v52yhi7k4kqgavqlz3ghqv5cx2ssz2djpyavs18r3"; - name = "breeze-icons-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/breeze-icons-5.33.0.tar.xz"; + sha256 = "07nb4xq00fw50r4vf10npa2z690rwkmlxdy42lxx3ixci4qw4204"; + name = "breeze-icons-5.33.0.tar.xz"; }; }; extra-cmake-modules = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/extra-cmake-modules-5.32.0.tar.xz"; - sha256 = "1iqakxzr6bcs9wgyi8if1smpq6px0bvlcyddyk0hxhindzl7pn5i"; - name = "extra-cmake-modules-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/extra-cmake-modules-5.33.0.tar.xz"; + sha256 = "013adgrz8s0w7a7z2ahkv28cq4c2cy00cw6y8akpkxazqhv5xzzk"; + name = "extra-cmake-modules-5.33.0.tar.xz"; }; }; frameworkintegration = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/frameworkintegration-5.32.0.tar.xz"; - sha256 = "022scc4pgl68973wq29l1kc9j9lspvlmpr3bc6zlyg57m8agapwa"; - name = "frameworkintegration-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/frameworkintegration-5.33.0.tar.xz"; + sha256 = "01c1jq77hm3v5xi84gn5hymlnnn1igcpz9v49yxgyvnihlblb1ll"; + name = "frameworkintegration-5.33.0.tar.xz"; }; }; kactivities = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kactivities-5.32.0.tar.xz"; - sha256 = "0xin4shaj0zsfsww84mwk5n4ldaqy730jhc369px2j2nq57sg9g7"; - name = "kactivities-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kactivities-5.33.0.tar.xz"; + sha256 = "092gk0zn15qm4pihxf1h4qn2n618wp43k67ffy3saw4fadqmxpsz"; + name = "kactivities-5.33.0.tar.xz"; }; }; kactivities-stats = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kactivities-stats-5.32.0.tar.xz"; - sha256 = "1b3z7bcap3vjc0155y0a9xkbd477fklmpj8dr3rs0ccyc6qxxbvw"; - name = "kactivities-stats-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kactivities-stats-5.33.0.tar.xz"; + sha256 = "1269nh4l94b3yxyvzdjw6vb8pxjylrvnrv28vnar8dmx0sbh5jpf"; + name = "kactivities-stats-5.33.0.tar.xz"; }; }; kapidox = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kapidox-5.32.0.tar.xz"; - sha256 = "1z6hdsppwrmqkcanrppxhqcrjvblg9i02rh3bz5m3pn66wwz0sdw"; - name = "kapidox-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kapidox-5.33.0.tar.xz"; + sha256 = "162x868dwl92361ss1dxv0gqh8g4apshcgb1ww4nizy239mfj8h0"; + name = "kapidox-5.33.0.tar.xz"; }; }; karchive = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/karchive-5.32.0.tar.xz"; - sha256 = "1dzvphqnc09mmaydqggpxg6zwwyr56p6l4jdf1rf6ns90fzxy0m4"; - name = "karchive-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/karchive-5.33.0.tar.xz"; + sha256 = "0i5grm0dhm9z6fd63ppykd6vl45k5nam4q8w1psrz7vjmr6sd924"; + name = "karchive-5.33.0.tar.xz"; }; }; kauth = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kauth-5.32.0.tar.xz"; - sha256 = "00kdq16n9w6nf1bpwzl5lp5c2xq74g8nn6081kvnjcd4ld66ncmq"; - name = "kauth-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kauth-5.33.0.tar.xz"; + sha256 = "1lfi4w4jgc9m83q6v3jf8p91x12vvcc3g59dlg7dh2agrh07r9y7"; + name = "kauth-5.33.0.tar.xz"; }; }; kbookmarks = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kbookmarks-5.32.0.tar.xz"; - sha256 = "03a024phcjv46afbp5lbmj2p8hb6srfzyaslc6ln6ms473bf5k4w"; - name = "kbookmarks-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kbookmarks-5.33.0.tar.xz"; + sha256 = "186difbzrpqlbi140ylkzb50d3fmn2pdz8i0r3gbc71726fqld82"; + name = "kbookmarks-5.33.0.tar.xz"; }; }; kcmutils = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kcmutils-5.32.0.tar.xz"; - sha256 = "1mr9h7wc22bfrbm92ajsjfcs16c5xpkrxbxzcma3a0s7jhy6qrm9"; - name = "kcmutils-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kcmutils-5.33.0.tar.xz"; + sha256 = "0n0cmjxlp0kkgrxng2ympnl1v5a1bjr2d9c20hf31xhvmya3y9nd"; + name = "kcmutils-5.33.0.tar.xz"; }; }; kcodecs = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kcodecs-5.32.0.tar.xz"; - sha256 = "0yybkp52i8nm4qjady6jqswn6v70cqbvjqwgrghjnc88b2cly253"; - name = "kcodecs-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kcodecs-5.33.0.tar.xz"; + sha256 = "1pdijdlrl9p5w6dixqx0lmkzwsk5xarzjhpwh616j2sinfra0w31"; + name = "kcodecs-5.33.0.tar.xz"; }; }; kcompletion = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kcompletion-5.32.0.tar.xz"; - sha256 = "0fn8imr3m219r38a0rafbnylcpjq4rqhz1w66mx80sc7l10mhcni"; - name = "kcompletion-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kcompletion-5.33.0.tar.xz"; + sha256 = "13mv5mm90jv4k56h4n6d7r2a0pax2mhdrm51xd99fjynad129lhi"; + name = "kcompletion-5.33.0.tar.xz"; }; }; kconfig = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kconfig-5.32.0.tar.xz"; - sha256 = "1pajh1l08b995shp6l75ri9z4vr6wjapvrkmrmv8hksnxvfi97dp"; - name = "kconfig-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kconfig-5.33.0.tar.xz"; + sha256 = "1inhpil19pv3jjf7mz4f5g367n1ciiixndij10p1zxk5zy46zzmf"; + name = "kconfig-5.33.0.tar.xz"; }; }; kconfigwidgets = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kconfigwidgets-5.32.0.tar.xz"; - sha256 = "1cq0a3k6pvl9f098ssqqk2rddxh0xn1kk4p5kfyd7w0m3c604zw3"; - name = "kconfigwidgets-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kconfigwidgets-5.33.0.tar.xz"; + sha256 = "0sd974r7xrpnhyqabgix0zb1rlis32ijj0wiabbqi4ns0nhhi3qf"; + name = "kconfigwidgets-5.33.0.tar.xz"; }; }; kcoreaddons = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kcoreaddons-5.32.0.tar.xz"; - sha256 = "1n1xzvwwji9pwyxrvwp4rmpc7qzp9nlis26xmn81k607jn587ksx"; - name = "kcoreaddons-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kcoreaddons-5.33.0.tar.xz"; + sha256 = "1906jscfc2kpd22d7yk88ziy3ky3hcfxy5y593pfzjl41gyhsiyl"; + name = "kcoreaddons-5.33.0.tar.xz"; }; }; kcrash = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kcrash-5.32.0.tar.xz"; - sha256 = "1zrkjrpj88ymdy5vbn9db73vxppswvmbn2gkn4gpx773dsmflhz3"; - name = "kcrash-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kcrash-5.33.0.tar.xz"; + sha256 = "136wlvaf4r54k8x0z0jvs7l35m0v22y6zqkhc8f91dr1y2ym2jnk"; + name = "kcrash-5.33.0.tar.xz"; }; }; kdbusaddons = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kdbusaddons-5.32.0.tar.xz"; - sha256 = "1a15jjsrkza0ll2viyk834pgdxsdgdacm0982xxwl5z937f75609"; - name = "kdbusaddons-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kdbusaddons-5.33.0.tar.xz"; + sha256 = "1xxbmr88w7hqxsrhjbgic0pn4adkydhv9xd77vwbzjj47123mph2"; + name = "kdbusaddons-5.33.0.tar.xz"; }; }; kdeclarative = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kdeclarative-5.32.0.tar.xz"; - sha256 = "1y5g3yi1l0g1mkqhhakg265r25zm23qc2fqg55rq0g7l9ss7w7g9"; - name = "kdeclarative-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kdeclarative-5.33.0.tar.xz"; + sha256 = "1333vv6kbdk4sdkkc8lnncgmm3203ca8ybn9nj6ch3zqwyxcaagk"; + name = "kdeclarative-5.33.0.tar.xz"; }; }; kded = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kded-5.32.0.tar.xz"; - sha256 = "0pmmsvqwkw86yvxxf9i6lg13vg80m0kmhjjs88lbm60cgvr5jhq6"; - name = "kded-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kded-5.33.0.tar.xz"; + sha256 = "02g66ip0d0cwb8grb6f3z1j7178w76pfs2f8d2dl1rax4hnjppd0"; + name = "kded-5.33.0.tar.xz"; }; }; kdelibs4support = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/portingAids/kdelibs4support-5.32.0.tar.xz"; - sha256 = "1wan5ad5rhhrwvwjjjd87n790r6d8r118gs2kw49s91pdj3iv9pb"; - name = "kdelibs4support-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/portingAids/kdelibs4support-5.33.0.tar.xz"; + sha256 = "1gyyvp4kqnjaf764y2z24jk68h5h0ax1z9h25msczy6bd4ify5v9"; + name = "kdelibs4support-5.33.0.tar.xz"; }; }; kdesignerplugin = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kdesignerplugin-5.32.0.tar.xz"; - sha256 = "1hapj8x8nky3m6lx2ianmxwprf00jqyjsknjz3pi4vk3i714vhnf"; - name = "kdesignerplugin-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kdesignerplugin-5.33.0.tar.xz"; + sha256 = "1f4f53xag6xbvacpn5j0zrsdwimksnckdza6kswcri5q258yb6ks"; + name = "kdesignerplugin-5.33.0.tar.xz"; 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- name = "kservice-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kservice-5.33.0.tar.xz"; + sha256 = "0jqq4ahscnqvzv8inhfzb9s6x97s60c4w8chpg16qwc7dqag887h"; + name = "kservice-5.33.0.tar.xz"; }; }; ktexteditor = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/ktexteditor-5.32.0.tar.xz"; - sha256 = "1sybw8k3f36mcs5qh3b51v7ynbqn4pbiiabkyxfmyi82i09m2jgw"; - name = "ktexteditor-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/ktexteditor-5.33.0.tar.xz"; + sha256 = "12fcqcxamkxv38w4j9waqmim7k801v6r6izlyg59iiy56yks4ms5"; + name = "ktexteditor-5.33.0.tar.xz"; }; }; ktextwidgets = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/ktextwidgets-5.32.0.tar.xz"; - sha256 = "1s2fd4n4hfkzscxv0cdfjynjzi1f57pfi9a3fp6rrm5c5645zk7r"; - name = "ktextwidgets-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/ktextwidgets-5.33.0.tar.xz"; + sha256 = "09rjr3655pbzwgjsmwbjsm7jwrxydl2jwhgbk8ziv1bgcg6cjrjy"; + name = "ktextwidgets-5.33.0.tar.xz"; }; }; kunitconversion = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kunitconversion-5.32.0.tar.xz"; - sha256 = "0crc8riwafcx6fwhgrc8vfbwmdygd6vlz1fbbgni09gamm8mbcin"; - name = "kunitconversion-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kunitconversion-5.33.0.tar.xz"; + sha256 = "0bflic2va9bc17q0smc4dzmgh72cjfjjaahhsvvnj54g2qggznkq"; + name = "kunitconversion-5.33.0.tar.xz"; }; }; kwallet = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kwallet-5.32.0.tar.xz"; - sha256 = "0psc4n6lck9gbx2nn7mgv33x4z2r0xp1mx1xcsgy8smvalrfv5xa"; - name = "kwallet-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kwallet-5.33.0.tar.xz"; + sha256 = "1jpybsksai9gm2bihcgl5m56rjfd0crj9i8j0l2s4vmmzxyflczj"; + name = "kwallet-5.33.0.tar.xz"; }; }; kwayland = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kwayland-5.32.0.tar.xz"; - sha256 = "1kzvq7qx102rfdv975x5sd37lsl6wn0mzm2m1f9fnnn2rvii3h5d"; - name = "kwayland-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kwayland-5.33.0.tar.xz"; + sha256 = "18nvdhfijnvzjiy0vjmqvf2nwz64ymxpnhlhs75y1d2ib8rm8qfq"; + name = "kwayland-5.33.0.tar.xz"; }; }; kwidgetsaddons = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kwidgetsaddons-5.32.0.tar.xz"; - sha256 = "1aksy326ppdfcx20zl9hxsd8j0br32j6dlx4i1xxbd976csys9b2"; - name = "kwidgetsaddons-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kwidgetsaddons-5.33.0.tar.xz"; + sha256 = "1dnspi7zf57lsihdynbik2iwvnhv8098vqyz0rps8s8pnjl7x8k4"; + name = "kwidgetsaddons-5.33.0.tar.xz"; }; }; kwindowsystem = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kwindowsystem-5.32.0.tar.xz"; - sha256 = "1c3kd23c4wwzdhfcyhv41czw3y2kk1492xn6ah9n3r98akrhgar1"; - name = "kwindowsystem-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kwindowsystem-5.33.0.tar.xz"; + sha256 = "1dj18774rlpxh9p8a07shhb4dzc0zpv4qvmh4j2y4c1g6v7n6b3p"; + name = "kwindowsystem-5.33.0.tar.xz"; }; }; kxmlgui = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kxmlgui-5.32.0.tar.xz"; - sha256 = "1pxi4z7z3bzwcnfwq0pvjsmds401fkisyr353lyxf4rvcpwj3a65"; - name = "kxmlgui-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kxmlgui-5.33.0.tar.xz"; + sha256 = "1q89xsrdhrsz7jb68hq8r3xdmhz0s19zwvd06skn6cfqx7r32ng0"; + name = "kxmlgui-5.33.0.tar.xz"; }; }; kxmlrpcclient = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/kxmlrpcclient-5.32.0.tar.xz"; - sha256 = "1kaczibdfdph5mpg1dldsmqb1six57w7ch3v0v7av5h6j6sx0xaq"; - name = "kxmlrpcclient-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/kxmlrpcclient-5.33.0.tar.xz"; + sha256 = "1zc6pn412day923k22br82xypvk24znb0ns1qsdlmrd2cnmv8l28"; + name = "kxmlrpcclient-5.33.0.tar.xz"; }; }; modemmanager-qt = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/modemmanager-qt-5.32.0.tar.xz"; - sha256 = "0ywyiq1kj4ya5knn0r12j9m1ig9mlyfypnrzihlvipddjrqs7jyd"; - name = "modemmanager-qt-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/modemmanager-qt-5.33.0.tar.xz"; + sha256 = "098l3plck45bn7lph7mfkm03q18zxl1s8aa3pyh6b69wk45r7j54"; + name = "modemmanager-qt-5.33.0.tar.xz"; }; }; networkmanager-qt = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/networkmanager-qt-5.32.0.tar.xz"; - sha256 = "0bcy7nzfvx2xah3kxklmrjn08qbjddiny7wf7nkxsbc3kkhrxqyd"; - name = "networkmanager-qt-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/networkmanager-qt-5.33.0.tar.xz"; + sha256 = "0pc4n4m93ypx1ryasw8n3bqll7v4yqa3749ir0qi096y5vysdd2m"; + name = "networkmanager-qt-5.33.0.tar.xz"; }; }; oxygen-icons5 = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/oxygen-icons5-5.32.0.tar.xz"; - sha256 = "05v3blgs4qbjl8s6470baahy9a98cfi3mplzp462axcgkqdj1nwf"; - name = "oxygen-icons5-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/oxygen-icons5-5.33.0.tar.xz"; + sha256 = "17kp66hra0vfkcvd7fh5q23wr040h0z6di4gdrm2zi1w5jbhw9kn"; + name = "oxygen-icons5-5.33.0.tar.xz"; }; }; plasma-framework = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/plasma-framework-5.32.0.tar.xz"; - sha256 = "1hrnmilc30d1kh20cky329i5ji3qyy7m4f8jzax5cgl7nrjca31h"; - name = "plasma-framework-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/plasma-framework-5.33.0.tar.xz"; + sha256 = "0rqm773n2r6vwmv41x27lr2zmx26s5s27ym3a6qy0w18fr86fxsd"; + name = "plasma-framework-5.33.0.tar.xz"; }; }; prison = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/prison-5.32.0.tar.xz"; - sha256 = "0q5cs60293bdm3mynhx39rjsh87mfxngxsqa2fqm2gsqjvlciyvr"; - name = "prison-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/prison-5.33.0.tar.xz"; + sha256 = "0hh065294s7sjj34vfwwb8zgagf1sa09l9filadl1ly0ig9f6h1r"; + name = "prison-5.33.0.tar.xz"; }; }; solid = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/solid-5.32.0.tar.xz"; - sha256 = "1jhymivravgix0sa0szkax50j09l5fl55xi3fbyjxlb4cil114v5"; - name = "solid-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/solid-5.33.0.tar.xz"; + sha256 = "0jb8jjv6mhwriqxfkd9fj0b7y1ab6vnwqi53sk4w4vw53d0wkqxm"; + name = "solid-5.33.0.tar.xz"; }; }; sonnet = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/sonnet-5.32.0.tar.xz"; - sha256 = "17sjv48b3z5fgplsy16ilcw6p7mlqjs61ib6jqd1mqzv4xrr27yi"; - name = "sonnet-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/sonnet-5.33.0.tar.xz"; + sha256 = "096ybf95rx5ybvl74nlnn9x2yb2j1akn8g8ywv1vwi2ckfpnp3sd"; + name = "sonnet-5.33.0.tar.xz"; }; }; syntax-highlighting = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/syntax-highlighting-5.32.0.tar.xz"; - sha256 = "1d9m7x53mwggwmhhba1c7b8v4f8qjql889y674ldpzs2nrk5y7x3"; - name = "syntax-highlighting-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/syntax-highlighting-5.33.0.tar.xz"; + sha256 = "0nn078sw0bkw1m5vsv02n46sc05blg3qnhxpmph2cikz5y86x9jq"; + name = "syntax-highlighting-5.33.0.tar.xz"; }; }; threadweaver = { - version = "5.32.0"; + version = "5.33.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.32/threadweaver-5.32.0.tar.xz"; - sha256 = "1qpy2rzqyd4ap5fibkfk87z66ijh2h79cd7f0h506jh2dbx20g0h"; - name = "threadweaver-5.32.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.33/threadweaver-5.33.0.tar.xz"; + sha256 = "16y7irjyyp4smy7nm7j4zc3gk9a046bwxvv51l7rfs7n4z0550ki"; + name = "threadweaver-5.33.0.tar.xz"; }; }; } diff --git a/pkgs/development/libraries/kirigami/default.nix b/pkgs/development/libraries/kirigami/default.nix index 66e67e6b853..e24ad8196ee 100644 --- a/pkgs/development/libraries/kirigami/default.nix +++ b/pkgs/development/libraries/kirigami/default.nix @@ -1,23 +1,47 @@ -{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig, plasma-framework, qtbase, qtquickcontrols }: +{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig +, plasma-framework, qtbase +, qtquickcontrols ? null +, qtquickcontrols2 ? null }: -stdenv.mkDerivation rec { +let pname = "kirigami"; - version = "1.1.0"; - name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://kde/stable/${pname}/${name}.tar.xz"; - sha256 = "1p9ydggwbyfdgwmvyc8004sk9mfshlg9b83lzvz9qk3a906ayxv6"; - }; + generic = { name, version, sha256, qtqc, broken }: + stdenv.mkDerivation rec { + inherit name version; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/${name}.tar.xz"; + inherit sha256; + }; + + buildInputs = [ plasma-framework qtbase qtqc ]; - buildInputs = [ qtbase qtquickcontrols plasma-framework ]; + nativeBuildInputs = [ cmake pkgconfig extra-cmake-modules ]; - nativeBuildInputs = [ cmake pkgconfig extra-cmake-modules ]; + meta = with stdenv.lib; { + license = licenses.lgpl2; + homepage = http://www.kde.org; + maintainers = with maintainers; [ ttuegel peterhoeg ]; + platforms = platforms.unix; + inherit broken; + }; + }; + +in { + kirigami_1 = generic rec { + name = "${pname}-${version}"; + version = "1.1.0"; + sha256 = "1p9ydggwbyfdgwmvyc8004sk9mfshlg9b83lzvz9qk3a906ayxv6"; + qtqc = qtquickcontrols; + broken = false; + }; - meta = with stdenv.lib; { - license = licenses.lgpl2; - homepage = http://www.kde.org; - maintainers = with maintainers; [ ttuegel peterhoeg ]; - platforms = platforms.unix; + kirigami_2 = generic rec { + name = "${pname}2-${version}"; + version = "2.1.0"; + sha256 = "0d79h10jzv9z7xzap4k9vbw6p9as8vdkz3x6xlzx407i9sbzyi77"; + qtqc = qtquickcontrols2; + broken = builtins.compareVersions qtbase.version "5.7.0" < 0; }; } diff --git a/pkgs/development/libraries/kirigami/v2.nix b/pkgs/development/libraries/kirigami/v2.nix deleted file mode 100644 index 0b332d40329..00000000000 --- a/pkgs/development/libraries/kirigami/v2.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig, plasma-framework, qtbase, qtquickcontrols2 }: - -stdenv.mkDerivation rec { - pname = "kirigami"; - version = "1.90.0"; - name = "${pname}2-${version}"; - - src = fetchurl { - url = "mirror://kde/unstable/${pname}/${pname}-${version}.tar.xz"; - sha256 = "a5ca094a60d1cc48116cbed07bbe68be016773d2488a91e278859c90f59e64a8"; - }; - - buildInputs = [ qtbase qtquickcontrols2 plasma-framework ]; - - nativeBuildInputs = [ cmake pkgconfig extra-cmake-modules ]; - - meta = with stdenv.lib; { - license = licenses.lgpl2; - homepage = http://www.kde.org; - maintainers = with maintainers; [ ttuegel peterhoeg ]; - platforms = platforms.unix; - broken = builtins.compareVersions qtbase.version "5.7.0" < 0; - }; -} diff --git a/pkgs/development/libraries/kpmcore/default.nix b/pkgs/development/libraries/kpmcore/default.nix new file mode 100644 index 00000000000..8532a8880ce --- /dev/null +++ b/pkgs/development/libraries/kpmcore/default.nix @@ -0,0 +1,31 @@ +{ stdenv, lib, fetchurl, extra-cmake-modules, pkgconfig +, qtbase, kdeFrameworks +, eject, libatasmart, parted }: + +let + pname = "kpmcore"; + +in stdenv.mkDerivation rec { + name = "${pname}-${version}"; + version = "3.0.3"; + + src = fetchurl { + url = "mirror://kde/stable/${pname}/${version}/src/${name}.tar.xz"; + sha256 = "17lqrp39w31fm7haigwq23cp92zwk3czjzqa2fhn3wafx3vafwd2"; + }; + + buildInputs = [ + qtbase + eject # this is to get libblkid + libatasmart + parted # we only need the library + + kdeFrameworks.kio + ]; + nativeBuildInputs = [ extra-cmake-modules ]; + enableParallelBuilding = true; + + meta = with stdenv.lib; { + maintainers = with lib.maintainers; [ peterhoeg ]; + }; +} diff --git a/pkgs/development/libraries/leatherman/default.nix b/pkgs/development/libraries/leatherman/default.nix index ea092a33637..d45a616606d 100644 --- a/pkgs/development/libraries/leatherman/default.nix +++ b/pkgs/development/libraries/leatherman/default.nix @@ -1,17 +1,17 @@ -{ stdenv, fetchFromGitHub, boost, cmake, curl }: +{ stdenv, fetchFromGitHub, boost, cmake, curl, ruby }: stdenv.mkDerivation rec { name = "leatherman-${version}"; - version = "0.10.1"; + version = "0.11.2"; src = fetchFromGitHub { - sha256 = "0kjk3xq7v6bqq35ymj9vr9xz5kpcka51ms6489pm48adyaf53hs7"; + sha256 = "1rnk204mvzc44i69b8gfb1fjj5r4qby7ymal782rdplnlbm065r8"; rev = version; repo = "leatherman"; owner = "puppetlabs"; }; - buildInputs = [ boost cmake curl ]; + buildInputs = [ boost cmake curl ruby ]; meta = with stdenv.lib; { homepage = https://github.com/puppetlabs/leatherman/; diff --git a/pkgs/development/libraries/libav/default.nix b/pkgs/development/libraries/libav/default.nix index e0b4babc970..6aa88a524c0 100644 --- a/pkgs/development/libraries/libav/default.nix +++ b/pkgs/development/libraries/libav/default.nix @@ -27,7 +27,7 @@ let inherit (stdenv.lib) optional optionals hasPrefix; in let result = { libav_0_8 = libavFun "0.8.20" "0c7a2417c3a01eb74072691bb93ce802ae1be08f"; - libav_11 = libavFun "11.8" "d0e93f6b229ae46c49d13ec183b13cfee70a51f0"; + libav_11 = libavFun "11.9" "36ed1329099676ff3c970576e03c6a21f2da2e15"; libav_12 = libavFun "12" "4ecde7274621c82a6882b7614d907b28de25cc4e"; }; @@ -41,7 +41,7 @@ let patches = [] ++ optional (vpxSupport && hasPrefix "0.8." version) ./vpxenc-0.8.17-libvpx-1.5.patch - ++ optional (vpxSupport && hasPrefix "11." version) ./vpxenc-11.6-libvpx-1.5.patch; + ; preConfigure = "patchShebangs doc/texi2pod.pl"; diff --git a/pkgs/development/libraries/libav/vpxenc-11.6-libvpx-1.5.patch b/pkgs/development/libraries/libav/vpxenc-11.6-libvpx-1.5.patch deleted file mode 100644 index f3c52582b44..00000000000 --- a/pkgs/development/libraries/libav/vpxenc-11.6-libvpx-1.5.patch +++ /dev/null @@ -1,22 +0,0 @@ ---- a/libavcodec/libvpxenc.c 2016-05-01 17:53:17.974517377 +0200 -+++ b/libavcodec/libvpxenc.c 2016-05-01 17:54:30.564923297 +0200 -@@ -70,19 +70,11 @@ - - /** String mappings for enum vp8e_enc_control_id */ - static const char *const ctlidstr[] = { -- [VP8E_UPD_ENTROPY] = "VP8E_UPD_ENTROPY", -- [VP8E_UPD_REFERENCE] = "VP8E_UPD_REFERENCE", -- [VP8E_USE_REFERENCE] = "VP8E_USE_REFERENCE", -- [VP8E_SET_ROI_MAP] = "VP8E_SET_ROI_MAP", -- [VP8E_SET_ACTIVEMAP] = "VP8E_SET_ACTIVEMAP", -- [VP8E_SET_SCALEMODE] = "VP8E_SET_SCALEMODE", - [VP8E_SET_CPUUSED] = "VP8E_SET_CPUUSED", - [VP8E_SET_ENABLEAUTOALTREF] = "VP8E_SET_ENABLEAUTOALTREF", - [VP8E_SET_NOISE_SENSITIVITY] = "VP8E_SET_NOISE_SENSITIVITY", -- [VP8E_SET_SHARPNESS] = "VP8E_SET_SHARPNESS", - [VP8E_SET_STATIC_THRESHOLD] = "VP8E_SET_STATIC_THRESHOLD", - [VP8E_SET_TOKEN_PARTITIONS] = "VP8E_SET_TOKEN_PARTITIONS", -- [VP8E_GET_LAST_QUANTIZER] = "VP8E_GET_LAST_QUANTIZER", - [VP8E_SET_ARNR_MAXFRAMES] = "VP8E_SET_ARNR_MAXFRAMES", - [VP8E_SET_ARNR_STRENGTH] = "VP8E_SET_ARNR_STRENGTH", - [VP8E_SET_ARNR_TYPE] = "VP8E_SET_ARNR_TYPE", diff --git a/pkgs/development/libraries/libconfig/default.nix b/pkgs/development/libraries/libconfig/default.nix index df18ae06ed6..7c569b2e92d 100644 --- a/pkgs/development/libraries/libconfig/default.nix +++ b/pkgs/development/libraries/libconfig/default.nix @@ -14,6 +14,6 @@ stdenv.mkDerivation rec { description = "A simple library for processing structured configuration files"; license = licenses.lgpl3; maintainers = [ maintainers.goibhniu ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/libconfuse/default.nix b/pkgs/development/libraries/libconfuse/default.nix index 15e0fbc6f79..a89bdec2c8a 100644 --- a/pkgs/development/libraries/libconfuse/default.nix +++ b/pkgs/development/libraries/libconfuse/default.nix @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { quick to integrate with your code. ''; license = licenses.isc; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ nckx ]; }; } diff --git a/pkgs/development/libraries/libdiscid/default.nix b/pkgs/development/libraries/libdiscid/default.nix index c5da3816c41..287494b6b1f 100644 --- a/pkgs/development/libraries/libdiscid/default.nix +++ b/pkgs/development/libraries/libdiscid/default.nix @@ -1,21 +1,25 @@ -{ stdenv, fetchurl, cmake, pkgconfig }: +{ stdenv, fetchurl, cmake, pkgconfig, darwin }: stdenv.mkDerivation rec { name = "libdiscid-${version}"; version = "0.6.2"; nativeBuildInputs = [ cmake pkgconfig ]; + + buildInputs = stdenv.lib.optionals stdenv.isDarwin [ darwin.apple_sdk.frameworks.IOKit ]; src = fetchurl { url = "http://ftp.musicbrainz.org/pub/musicbrainz/libdiscid/${name}.tar.gz"; sha256 = "1f9irlj3dpb5gyfdnb1m4skbjvx4d4hwiz2152f83m0d9jn47r7r"; }; + NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isDarwin "-framework CoreFoundation -framework IOKit"; + meta = with stdenv.lib; { description = "A C library for creating MusicBrainz DiscIDs from audio CDs"; homepage = http://musicbrainz.org/doc/libdiscid; maintainers = with maintainers; [ ehmry ]; license = licenses.lgpl21; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/libdvdread/default.nix b/pkgs/development/libraries/libdvdread/default.nix index 72b582a90ad..be7e20f00eb 100644 --- a/pkgs/development/libraries/libdvdread/default.nix +++ b/pkgs/development/libraries/libdvdread/default.nix @@ -22,6 +22,6 @@ stdenv.mkDerivation rec { description = "A library for reading DVDs"; license = stdenv.lib.licenses.gpl2; maintainers = [ stdenv.lib.maintainers.wmertens ]; - platforms = stdenv.lib.platforms.linux; + platforms = with stdenv.lib.platforms; linux ++ darwin; }; } diff --git a/pkgs/development/libraries/libfm/default.nix b/pkgs/development/libraries/libfm/default.nix index 2b30dacb58f..ad400a0aef6 100644 --- a/pkgs/development/libraries/libfm/default.nix +++ b/pkgs/development/libraries/libfm/default.nix @@ -24,6 +24,6 @@ stdenv.mkDerivation rec { license = licenses.lgpl21Plus; description = "A glib-based library for file management"; maintainers = [ maintainers.ttuegel ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/libgtop/default.nix b/pkgs/development/libraries/libgtop/default.nix index ee4f9401bbb..de72072e48b 100644 --- a/pkgs/development/libraries/libgtop/default.nix +++ b/pkgs/development/libraries/libgtop/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, glib, pkgconfig, perl, intltool, gobjectIntrospection }: +{ stdenv, fetchurl, glib, pkgconfig, perl, intltool, gobjectIntrospection, libintlOrEmpty }: stdenv.mkDerivation rec { name = "libgtop-${version}"; major = "2.34"; @@ -10,9 +10,12 @@ stdenv.mkDerivation rec { }; propagatedBuildInputs = [ glib ]; + buildInputs = libintlOrEmpty; nativeBuildInputs = [ pkgconfig perl intltool gobjectIntrospection ]; + NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isDarwin "-lintl"; + meta = { - platforms = stdenv.lib.platforms.linux; + platforms = with stdenv.lib.platforms; linux ++ darwin; }; } diff --git a/pkgs/development/libraries/libguestfs/default.nix b/pkgs/development/libraries/libguestfs/default.nix index 7902cf67c8d..73424902cd0 100644 --- a/pkgs/development/libraries/libguestfs/default.nix +++ b/pkgs/development/libraries/libguestfs/default.nix @@ -35,11 +35,15 @@ stdenv.mkDerivation rec { substituteInPlace ocaml/Makefile.in --replace '$(DESTDIR)$(OCAMLLIB)' '$(out)/lib/ocaml' substituteInPlace v2v/test-harness/Makefile.am --replace '$(DESTDIR)$(OCAMLLIB)' '$(out)/lib/ocaml' substituteInPlace v2v/test-harness/Makefile.in --replace '$(DESTDIR)$(OCAMLLIB)' '$(out)/lib/ocaml' + + # some scripts hardcore /usr/bin/env which is not available in the build env + patchShebangs . ''; configureFlags = "--disable-appliance --disable-daemon"; patches = [ ./libguestfs-syms.patch ]; NIX_CFLAGS_COMPILE="-I${libxml2.dev}/include/libxml2/"; installFlags = "REALLY_INSTALL=yes"; + enableParallelBuilding = true; postInstall = '' for bin in $out/bin/*; do diff --git a/pkgs/development/libraries/libhttpseverywhere/default.nix b/pkgs/development/libraries/libhttpseverywhere/default.nix index 1e60a63fe06..961b8a77670 100644 --- a/pkgs/development/libraries/libhttpseverywhere/default.nix +++ b/pkgs/development/libraries/libhttpseverywhere/default.nix @@ -1,15 +1,15 @@ {stdenv, fetchurl, gnome3, glib, json_glib, libxml2, libarchive, libsoup, gobjectIntrospection, meson, ninja, pkgconfig, valadoc}: stdenv.mkDerivation rec { - major = "0.2"; - minor = "10"; + major = "0.4"; + minor = "2"; version = "${major}.${minor}"; name = "libhttpseverywhere-${version}"; src = fetchurl { url = "mirror://gnome/sources/libhttpseverywhere/${major}/libhttpseverywhere-${version}.tar.xz"; - sha256 = "235f5b7f96188d800470871774e31696fbde085b63f65bd71434af8e9e6ac8aa"; + sha256 = "0n850a4adsla6di8dylnadg07wblkdl28abrjvk6fzy8a1kjlx02"; }; nativeBuildInputs = [ gnome3.vala valadoc gobjectIntrospection meson ninja pkgconfig ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { configurePhase = '' mkdir build cd build - meson.py --prefix "$out" .. + meson --prefix "$out" .. ''; buildPhase = '' diff --git a/pkgs/development/libraries/libidn2/default.nix b/pkgs/development/libraries/libidn2/default.nix index ea26f480cd1..61926dad24d 100644 --- a/pkgs/development/libraries/libidn2/default.nix +++ b/pkgs/development/libraries/libidn2/default.nix @@ -3,11 +3,12 @@ with stdenv.lib; stdenv.mkDerivation rec { - name = "libidn2-0.16"; + name = "libidn2-${version}"; + version = "2.0.2"; src = fetchurl { - url = "https://alpha.gnu.org/gnu/libidn/${name}.tar.gz"; - sha256 = "13v8kh4d5nfkymai88zlw3h7k4x9khrpdpv97waf4ah8ykzrxb9g"; + url = "mirror://gnu/gnu/libidn/${name}.tar.gz"; + sha256 = "1azfhz8zj1c27a5k2cspnkzkyfhcsqx2yc2sygh720dbn8l2imlc"; }; outputs = [ "bin" "dev" "out" "info" "devdoc" ]; diff --git a/pkgs/development/libraries/libidn2/fix-error-darwin.patch b/pkgs/development/libraries/libidn2/fix-error-darwin.patch index db3edd6e4a0..e2202abd947 100644 --- a/pkgs/development/libraries/libidn2/fix-error-darwin.patch +++ b/pkgs/development/libraries/libidn2/fix-error-darwin.patch @@ -10,17 +10,6 @@ index 6abbc72..804f0f2 100644 #include "gettext.h" #define _(String) dgettext (PACKAGE, String) #include "progname.h" -@@ -161,9 +160,7 @@ process_input (char *readbuf, int flags) - free (output); - } - else -- error (EXIT_FAILURE, 0, "%s: %s", -- args_info.register_given ? "register" : "lookup", -- idn2_strerror (rc)); -+ perror (idn2_strerror (rc)); - } - - int @@ -222,7 +219,7 @@ main (int argc, char *argv[]) } diff --git a/pkgs/development/libraries/libinfinity/default.nix b/pkgs/development/libraries/libinfinity/default.nix index d13a9050dc9..b55e0104f70 100644 --- a/pkgs/development/libraries/libinfinity/default.nix +++ b/pkgs/development/libraries/libinfinity/default.nix @@ -3,7 +3,8 @@ , documentation ? false # build documentation , avahiSupport ? false # build support for Avahi in libinfinity , stdenv, fetchurl, pkgconfig, glib, libxml2, gnutls, gsasl -, gtk2 ? null, gtkdoc ? null, avahi ? null, libdaemon ? null, libidn, gss }: +, gtk2 ? null, gtkdoc ? null, avahi ? null, libdaemon ? null, libidn, gss +, libintlOrEmpty }: let edf = flag: feature: (if flag then "--with-" else "--without-") + feature; @@ -17,7 +18,7 @@ in stdenv.mkDerivation rec { sha256 = "1idsxb6rz4i55g3vi2sv7hmm57psbccpb57yc4jgphaq6ydgqsr6"; }; - buildInputs = [ pkgconfig glib libxml2 gsasl libidn gss ] + buildInputs = [ pkgconfig glib libxml2 gsasl libidn gss libintlOrEmpty ] ++ optional gtkWidgets gtk2 ++ optional documentation gtkdoc ++ optional avahiSupport avahi @@ -34,12 +35,14 @@ in stdenv.mkDerivation rec { ${edf avahiSupport "avahi"} ''; + NIX_LDFLAGS = stdenv.lib.optionalString stdenv.isDarwin "-lintl"; + meta = { homepage = http://gobby.0x539.de/; description = "An implementation of the Infinote protocol written in GObject-based C"; license = stdenv.lib.licenses.lgpl2Plus; maintainers = [ stdenv.lib.maintainers.phreedom ]; - platforms = stdenv.lib.platforms.linux; + platforms = with stdenv.lib.platforms; linux ++ darwin; }; } diff --git a/pkgs/development/libraries/liblo/default.nix b/pkgs/development/libraries/liblo/default.nix index cb62ff3628b..7b7e96012ea 100644 --- a/pkgs/development/libraries/liblo/default.nix +++ b/pkgs/development/libraries/liblo/default.nix @@ -13,6 +13,6 @@ stdenv.mkDerivation rec { homepage = http://sourceforge.net/projects/liblo; license = stdenv.lib.licenses.gpl2; maintainers = [stdenv.lib.maintainers.marcweber]; - platforms = stdenv.lib.platforms.linux; + platforms = with stdenv.lib.platforms; linux ++ darwin; }; } diff --git a/pkgs/development/libraries/libmatroska/default.nix b/pkgs/development/libraries/libmatroska/default.nix index 3b3dee138a5..81fa9011e30 100644 --- a/pkgs/development/libraries/libmatroska/default.nix +++ b/pkgs/development/libraries/libmatroska/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, libebml }: stdenv.mkDerivation rec { - name = "libmatroska-1.4.5"; + name = "libmatroska-1.4.7"; src = fetchurl { url = "http://dl.matroska.org/downloads/libmatroska/${name}.tar.bz2"; - sha256 = "1g2p2phmhkp86ldd2zqx6q0s33r7d38rsfnr4wmmdr81d6j3y0kr"; + sha256 = "1yi5cnv13nhl27xyqayd5l3sf0j3swfj3apzibv71yg9pariwi26"; }; nativeBuildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/libmediainfo/default.nix b/pkgs/development/libraries/libmediainfo/default.nix index f57a49ab812..09b829695c4 100644 --- a/pkgs/development/libraries/libmediainfo/default.nix +++ b/pkgs/development/libraries/libmediainfo/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, autoreconfHook, pkgconfig, libzen, zlib }: stdenv.mkDerivation rec { - version = "0.7.91"; + version = "0.7.95"; name = "libmediainfo-${version}"; src = fetchurl { url = "http://mediaarea.net/download/source/libmediainfo/${version}/libmediainfo_${version}.tar.xz"; - sha256 = "1h39cwd85rgidr0hbwab9dwbjv25xhvjv8y2nv35p3fwrs48p098"; + sha256 = "0snrcashc5c5gcwvfh7sl7z4h523d8vxbfin3gb6g81zv43d2b23"; }; nativeBuildInputs = [ autoreconfHook pkgconfig ]; diff --git a/pkgs/development/libraries/libmicrohttpd/default.nix b/pkgs/development/libraries/libmicrohttpd/default.nix index c38d5c82570..0a1fe70bd1d 100644 --- a/pkgs/development/libraries/libmicrohttpd/default.nix +++ b/pkgs/development/libraries/libmicrohttpd/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, libgcrypt, curl, gnutls, pkgconfig }: stdenv.mkDerivation rec { - name = "libmicrohttpd-0.9.52"; + name = "libmicrohttpd-0.9.53"; src = fetchurl { url = "mirror://gnu/libmicrohttpd/${name}.tar.gz"; - sha256 = "1smgxw6jv81yybg86bzr4c2sn7a31apf8q4zz0kpch9xfrp7yyal"; + sha256 = "1i1c7hwjmc4n31cgmfycgi8xsnm3kyc4zzdd4dir6i0z70nyq5cv"; }; outputs = [ "out" "dev" "devdoc" "info" ]; diff --git a/pkgs/development/libraries/libplist/default.nix b/pkgs/development/libraries/libplist/default.nix index 7ff44db52a8..f1c421b4bf7 100644 --- a/pkgs/development/libraries/libplist/default.nix +++ b/pkgs/development/libraries/libplist/default.nix @@ -3,13 +3,12 @@ let inherit (python2Packages) python cython; in stdenv.mkDerivation rec { - name = "libplist-1.12"; + name = "libplist-${version}"; + version = "2.0.0"; - nativeBuildInputs = [ pkgconfig swig2 python cython ]; + nativeBuildInputs = [ pkgconfig swig2 python cython ]; - #patches = [ ./swig.patch ]; - - propagatedBuildInputs = [ libxml2 glib ]; + propagatedBuildInputs = [ glib ]; passthru.swig = swig2; @@ -21,19 +20,12 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "http://www.libimobiledevice.org/downloads/${name}.tar.bz2"; - sha256 = "1gj4nv0bvdm5y2sqm2vj2rn44k67ahw3mh6q614qq4nyngfdxzqf"; + sha256 = "00pnh9zf3iwdji2faccns7vagbmbrwbj9a8zp9s53a6rqaa9czis"; }; meta = { homepage = http://github.com/JonathanBeck/libplist; platforms = stdenv.lib.platforms.all; maintainers = [ ]; - knownVulnerabilities = [ - "CVE-2017-5209: base64decode function in base64.c allows attackers to obtain sensitive information from process memory or cause a denial of service" - "CVE-2017-5545: attackers to obtain sensitive information from process memory or cause a denial of service" - "CVE-2017-5834: A heap-buffer overflow in parse_dict_node" - "CVE-2017-5835: A memory allocation error leading to DoS" - "CVE-2017-5836: A type inconsistency in bplist.c" - ]; }; } diff --git a/pkgs/development/libraries/libplist/swig.patch b/pkgs/development/libraries/libplist/swig.patch deleted file mode 100644 index 9686a7cbf51..00000000000 --- a/pkgs/development/libraries/libplist/swig.patch +++ /dev/null @@ -1,37 +0,0 @@ -commit ca6096bc29873d5a3c03d782b134253ac2e61beb -Author: Yury G. Kudryashov <urkud.urkud@gmail.com> -Date: Fri Sep 24 17:16:40 2010 +0400 - - Install python bindings to libplist prefix, not to system directory. - - This allows one to install libplist to $HOME/prefix and adjust - PYTHONPATH. - -diff --git a/swig/CMakeLists.txt b/swig/CMakeLists.txt -index 379cb95..fcacde0 100644 ---- a/swig/CMakeLists.txt -+++ b/swig/CMakeLists.txt -@@ -9,16 +9,18 @@ SWIG_ADD_MODULE( plist python plist.i ) - SWIG_LINK_LIBRARIES( plist plist plist++ ${PYTHON_LIBRARIES} ) - - EXEC_PROGRAM("${PYTHON_EXECUTABLE}" -- ARGS "-c 'try:\n import distutils.sysconfig; print distutils.sysconfig.get_python_lib(plat_specific=1)\nexcept: pass\n'" -- OUTPUT_VARIABLE DISTUTILS_PYTHON_ILIBRARY_PATH -+ ARGS "-c 'import sys; print sys.version[:3];'" -+ OUTPUT_VARIABLE PYTHON_SHORT_VERSION - ) - -+SET(PYTHON_SITE_PACKAGES_INSTALL_DIR ${CMAKE_INSTALL_LIBDIR}/python${PYTHON_SHORT_VERSION}/site-packages CACHE PATH "The directory where python modules will be installed to.") -+ - INSTALL( FILES ${CMAKE_CURRENT_BINARY_DIR}/_plist${CMAKE_SHARED_MODULE_SUFFIX} -- DESTINATION ${DISTUTILS_PYTHON_ILIBRARY_PATH}/plist/ ) -+ DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}/plist/ ) - INSTALL( FILES ${CMAKE_CURRENT_BINARY_DIR}/plist.py -- DESTINATION ${DISTUTILS_PYTHON_ILIBRARY_PATH}/plist/ ) -+ DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}/plist/ ) - INSTALL( FILES ${CMAKE_CURRENT_SOURCE_DIR}/__init__.py -- DESTINATION ${DISTUTILS_PYTHON_ILIBRARY_PATH}/plist/ ) -+ DESTINATION ${PYTHON_SITE_PACKAGES_INSTALL_DIR}/plist/ ) - INSTALL( FILES ${CMAKE_CURRENT_SOURCE_DIR}/plist.i - DESTINATION include/plist/swig COMPONENT dev) - diff --git a/pkgs/development/libraries/libqmi/default.nix b/pkgs/development/libraries/libqmi/default.nix index d0b46722ff3..2e316a30a01 100644 --- a/pkgs/development/libraries/libqmi/default.nix +++ b/pkgs/development/libraries/libqmi/default.nix @@ -1,11 +1,11 @@ -{ stdenv, fetchurl, pkgconfig, glib, python }: +{ stdenv, fetchurl, pkgconfig, glib, python, libgudev, libmbim }: stdenv.mkDerivation rec { - name = "libqmi-1.16.0"; + name = "libqmi-1.18.0"; src = fetchurl { url = "https://www.freedesktop.org/software/libqmi/${name}.tar.xz"; - sha256 = "0amshs06qc8zy8jz3r2yksqhhbamll7f893ll4zlvgr3zm3vpdks"; + sha256 = "1v4cz3nsmh7nn3smhlhwzrb7yh6l1f270bwf40qacxayjdajr950"; }; outputs = [ "out" "dev" "devdoc" ]; @@ -14,7 +14,9 @@ stdenv.mkDerivation rec { patchShebangs . ''; - buildInputs = [ pkgconfig glib python ]; + buildInputs = [ pkgconfig glib python libgudev libmbim ]; + + configureFlags = ["--enable-mbim-qmux" ]; meta = with stdenv.lib; { homepage = http://www.freedesktop.org/wiki/Software/libqmi/; diff --git a/pkgs/development/libraries/libressl/2.5.nix b/pkgs/development/libraries/libressl/2.5.nix index b2444b18902..2284db5ad7d 100644 --- a/pkgs/development/libraries/libressl/2.5.nix +++ b/pkgs/development/libraries/libressl/2.5.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "libressl-${version}"; - version = "2.5.3"; + version = "2.5.4"; src = fetchurl { url = "mirror://openbsd/LibreSSL/${name}.tar.gz"; - sha256 = "0c4awq45cl757fv7f7f75i5i0ibc6v7ns13n7xvfak7chv2lrqql"; + sha256 = "1ykf6dqlbafafhbdfmcj19pjj1z6wmsq0rmyqga1i0xv5x95nyhh"; }; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/libsamplerate/default.nix b/pkgs/development/libraries/libsamplerate/default.nix index faeeb34d65d..6dff8ebc8a1 100644 --- a/pkgs/development/libraries/libsamplerate/default.nix +++ b/pkgs/development/libraries/libsamplerate/default.nix @@ -30,10 +30,7 @@ in stdenv.mkDerivation rec { meta = with stdenv.lib; { description = "Sample Rate Converter for audio"; homepage = http://www.mega-nerd.com/SRC/index.html; - # you can choose one of the following licenses: - # GPL or a commercial-use license (available at - # http://www.mega-nerd.com/SRC/libsamplerate-cul.pdf) - licenses = with licenses; [ gpl3.shortName unfree ]; + license = licenses.bsd2; maintainers = with maintainers; [ lovek323 wkennington ]; platforms = platforms.all; }; diff --git a/pkgs/development/libraries/libscrypt/default.nix b/pkgs/development/libraries/libscrypt/default.nix new file mode 100644 index 00000000000..882b3258b7d --- /dev/null +++ b/pkgs/development/libraries/libscrypt/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchFromGitHub }: + +stdenv.mkDerivation rec { + name = "libscrypt-${version}"; + version = "1.21"; + + src = fetchFromGitHub { + owner = "technion"; + repo = "libscrypt"; + rev = "v${version}"; + sha256 = "1d76ys6cp7fi4ng1w3mz2l0p9dbr7ljbk33dcywyimzjz8bahdng"; + }; + + buildFlags = stdenv.lib.optional stdenv.isDarwin "LDFLAGS= CFLAGS_EXTRA="; + + installFlags = [ "PREFIX=$(out)" ]; + installTargets = if stdenv.isDarwin then "install-osx" else "install"; + + doCheck = true; + + meta = with stdenv.lib; { + description = "Shared library that implements scrypt() functionality"; + homepage = "https://lolware.net/2014/04/29/libscrypt.html"; + license = licenses.bsd2; + maintainers = with maintainers; [ davidak ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/libseccomp/default.nix b/pkgs/development/libraries/libseccomp/default.nix index 1575a60ec69..3b365c0e971 100644 --- a/pkgs/development/libraries/libseccomp/default.nix +++ b/pkgs/development/libraries/libseccomp/default.nix @@ -15,9 +15,8 @@ stdenv.mkDerivation rec { patchShebangs . ''; - postInstall = '' - wrapProgram $out/bin/scmp_sys_resolver --prefix LD_LIBRARY_PATH ":" $out/lib - ''; + # Hack to ensure that patchelf --shrink-rpath get rids of a $TMPDIR reference. + preFixup = "rm -rfv src"; meta = with stdenv.lib; { description = "High level library for the Linux Kernel seccomp filter"; @@ -27,4 +26,3 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ thoughtpolice wkennington ]; }; } - diff --git a/pkgs/development/libraries/libsmi/default.nix b/pkgs/development/libraries/libsmi/default.nix new file mode 100644 index 00000000000..21b788efb89 --- /dev/null +++ b/pkgs/development/libraries/libsmi/default.nix @@ -0,0 +1,18 @@ +{ stdenv , fetchurl }: + +stdenv.mkDerivation rec { + name = "libsmi-${version}"; + version = "0.5.0"; + + src = fetchurl { + url = "https://www.ibr.cs.tu-bs.de/projects/libsmi/download/${name}.tar.gz"; + sha256 = "1lslaxr2qcj6hf4naq5n5mparfhmswsgq4wa7zm2icqvvgdcq6pj"; + }; + + meta = with stdenv.lib; { + description = "A Library to Access SMI MIB Information"; + homepage = "https://www.ibr.cs.tu-bs.de/projects/libsmi/index.html"; + license = licenses.free; + platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; + }; +} diff --git a/pkgs/development/libraries/libssh/default.nix b/pkgs/development/libraries/libssh/default.nix index 1db053ef398..408436ca618 100644 --- a/pkgs/development/libraries/libssh/default.nix +++ b/pkgs/development/libraries/libssh/default.nix @@ -1,11 +1,11 @@ { stdenv, fetchurl, pkgconfig, cmake, zlib, openssl, libsodium }: stdenv.mkDerivation rec { - name = "libssh-0.7.4"; + name = "libssh-0.7.5"; src = fetchurl { - url = "https://red.libssh.org/attachments/download/210/${name}.tar.xz"; - sha256 = "03bcp9ksqp0s1pmwfmzhcknvkxay5k0mjzzxp3rjlifbng1vxq9r"; + url = "https://red.libssh.org/attachments/download/218/${name}.tar.xz"; + sha256 = "15bh6dm9c50ndddzh3gqcgw7axp3ghrspjpkb1z3dr90vkanvs2l"; }; postPatch = '' diff --git a/pkgs/development/libraries/libtiger/default.nix b/pkgs/development/libraries/libtiger/default.nix index 58e92f11018..deab3043035 100644 --- a/pkgs/development/libraries/libtiger/default.nix +++ b/pkgs/development/libraries/libtiger/default.nix @@ -12,7 +12,6 @@ stdenv.mkDerivation rec { meta = { homepage = http://code.google.com/p/libtiger/; - authors = [ "Vincent Penquerc'h" ]; description = "A rendering library for Kate streams using Pango and Cairo"; platforms = stdenv.lib.platforms.unix; }; diff --git a/pkgs/development/libraries/libtoxcore/default.nix b/pkgs/development/libraries/libtoxcore/default.nix index d92674e59ef..0d0563eb5dd 100644 --- a/pkgs/development/libraries/libtoxcore/default.nix +++ b/pkgs/development/libraries/libtoxcore/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { name = "libtoxcore-${version}"; - version = "0.1.7"; + version = "0.1.8"; src = fetchFromGitHub { owner = "TokTok"; repo = "c-toxcore"; rev = "v${version}"; - sha256 = "11lqq825id174xdjxm0cy5dbyvmdy841hjy9q3l51yiya9f82d5b"; + sha256 = "08vdq3j60wn62lj2z9f3f47hibns93rvaqx5xc5bm3nglk70q7kk"; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/libxml2/default.nix b/pkgs/development/libraries/libxml2/default.nix index d44a8c973fd..fb397ace794 100644 --- a/pkgs/development/libraries/libxml2/default.nix +++ b/pkgs/development/libraries/libxml2/default.nix @@ -70,7 +70,7 @@ in stdenv.mkDerivation rec { meta = { homepage = http://xmlsoft.org/; description = "An XML parsing library for C"; - license = "bsd"; + license = lib.licenses.mit; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.eelco ]; }; diff --git a/pkgs/development/libraries/libxslt/default.nix b/pkgs/development/libraries/libxslt/default.nix index 7798c806982..4647eecf87d 100644 --- a/pkgs/development/libraries/libxslt/default.nix +++ b/pkgs/development/libraries/libxslt/default.nix @@ -48,7 +48,7 @@ stdenv.mkDerivation rec { meta = with stdenv.lib; { homepage = http://xmlsoft.org/XSLT/; description = "A C library and tools to do XSL transformations"; - license = "bsd"; + license = licenses.mit; platforms = platforms.unix; maintainers = [ maintainers.eelco ]; }; diff --git a/pkgs/development/libraries/libytnef/default.nix b/pkgs/development/libraries/libytnef/default.nix new file mode 100644 index 00000000000..8af7d5d8797 --- /dev/null +++ b/pkgs/development/libraries/libytnef/default.nix @@ -0,0 +1,25 @@ +{ stdenv, lib, fetchFromGitHub, autoreconfHook }: + +with lib; + +stdenv.mkDerivation rec { + name = "libytnef-${version}"; + version = "1.9.2"; + + src = fetchFromGitHub { + owner = "Yeraze"; + repo = "ytnef"; + rev = "v${version}"; + sha256 = "1aavckl7rjbiakwcf4rrkhchrl450p3vq3dy78cxfmgg0jqnvxqy"; + }; + + nativeBuildInputs = [ autoreconfHook ]; + + meta = { + inherit (src.meta) homepage; + description = "Yeraze's TNEF Stream Reader - for winmail.dat files"; + license = licenses.gpl2Plus; + platforms = platforms.all; + maintainers = with maintainers; [ fpletz ]; + }; +} diff --git a/pkgs/development/libraries/log4cpp/default.nix b/pkgs/development/libraries/log4cpp/default.nix index b5a6ecac9cf..96cbbb770b4 100644 --- a/pkgs/development/libraries/log4cpp/default.nix +++ b/pkgs/development/libraries/log4cpp/default.nix @@ -2,16 +2,18 @@ stdenv.mkDerivation rec { name = "log4cpp-1.1.1"; - + src = fetchurl { url = "mirror://sourceforge/log4cpp/${name}.tar.gz"; sha256 = "1l5yz5rfzzv6g3ynrj14mxfsk08cp5h1ssr7d74hjs0accrg7arm"; }; - meta = { - homepage = http://log4cpp.sourceforge.net/; + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = "http://log4cpp.sourceforge.net/"; description = "A logging framework for C++ patterned after Apache log4j"; - license = stdenv.lib.licenses.lgpl21Plus; - platforms = stdenv.lib.platforms.unix; + license = licenses.lgpl21Plus; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/log4shib/default.nix b/pkgs/development/libraries/log4shib/default.nix new file mode 100644 index 00000000000..7b672aebe44 --- /dev/null +++ b/pkgs/development/libraries/log4shib/default.nix @@ -0,0 +1,19 @@ +{ stdenv, fetchgit, autoreconfHook }: + +stdenv.mkDerivation rec { + name = "log4shib-${version}"; + version = "1.0.9"; + + src = fetchgit { + url = "https://git.shibboleth.net/git/cpp-log4shib.git"; + rev = "a1afe19b7b49c32fcb03e6d72809501b8965cf85"; + sha256 = "06rrc5l6qxlc8abzim2jcxwz2c577qrjqx15cbfqq1zfqagj9hix"; + }; + + nativeBuildInputs = [ autoreconfHook ]; + + meta = with stdenv.lib; { + description = "A forked version of log4cpp that has been created for the Shibboleth project"; + maintainers = [ maintainers.jammerful ]; + }; +} diff --git a/pkgs/development/libraries/mapnik/default.nix b/pkgs/development/libraries/mapnik/default.nix index 4bd89df1581..96dbc094b55 100644 --- a/pkgs/development/libraries/mapnik/default.nix +++ b/pkgs/development/libraries/mapnik/default.nix @@ -8,12 +8,12 @@ stdenv.mkDerivation rec { name = "mapnik-${version}"; - version = "3.0.12"; + version = "3.0.13"; src = fetchzip { # this one contains all git submodules and is cheaper than fetchgit url = "https://github.com/mapnik/mapnik/releases/download/v${version}/mapnik-v${version}.tar.bz2"; - sha256 = "02w360fxk0pfkk0zbwc134jq7rkkib58scs5k67j8np6fx6gag6i"; + sha256 = "189wsd6l6awblkiha666l1sdyp7ifmnfsa87y0j37rvym6w4r065"; }; # a distinct dev output makes python-mapnik fail diff --git a/pkgs/development/libraries/menu-cache/default.nix b/pkgs/development/libraries/menu-cache/default.nix index 9b2fd805c31..b3c7daf990c 100644 --- a/pkgs/development/libraries/menu-cache/default.nix +++ b/pkgs/development/libraries/menu-cache/default.nix @@ -18,6 +18,6 @@ stdenv.mkDerivation { license = licenses.gpl2Plus; description = "Library to read freedesktop.org menu files"; maintainers = [ maintainers.ttuegel ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index b7a5f1a5c90..e9edda698f4 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -67,7 +67,7 @@ let in let - version = "17.0.3"; + version = "17.0.4"; branch = head (splitString "." version); driverLink = "/run/opengl-driver" + optionalString stdenv.isi686 "-32"; in @@ -82,7 +82,7 @@ stdenv.mkDerivation { "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz" "https://launchpad.net/mesa/trunk/${version}/+download/mesa-${version}.tar.xz" ]; - sha256 = "ca646f5075a002d60ef9123c8a4331cede155c01712ef945a65c59a5e69fe7ed"; + sha256 = "1269dc8545a193932a0779b2db5bce9be4a5f6813b98c38b93b372be8362a346"; }; prePatch = "patchShebangs ."; diff --git a/pkgs/development/libraries/ncurses/default.nix b/pkgs/development/libraries/ncurses/default.nix index 4ffaee9be5a..9e7f2eef46b 100644 --- a/pkgs/development/libraries/ncurses/default.nix +++ b/pkgs/development/libraries/ncurses/default.nix @@ -5,6 +5,9 @@ , unicode ? true , gpm + +, buildPlatform, hostPlatform +, buildPackages }: let version = if abiVersion == "5" then "5.9" else "6.0"; @@ -35,7 +38,11 @@ stdenv.mkDerivation rec { # Only the C compiler, and explicitly not C++ compiler needs this flag on solaris: CFLAGS = lib.optionalString stdenv.isSunOS "-D_XOPEN_SOURCE_EXTENDED"; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ + pkgconfig + ] ++ lib.optionals (buildPlatform != hostPlatform) [ + buildPackages.ncurses buildPackages.stdenv.cc + ]; buildInputs = lib.optional (mouseSupport && stdenv.isLinux) gpm; preConfigure = '' @@ -58,7 +65,8 @@ stdenv.mkDerivation rec { sed -i -e 's,LIB_SUFFIX="t,LIB_SUFFIX=",' configure ''; - selfNativeBuildInput = true; + # Here only for native hash, remove on next mass rebuild + selfNativeBuildInput = buildPlatform == hostPlatform; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/openal-soft/default.nix b/pkgs/development/libraries/openal-soft/default.nix index c17c224415d..87e5e44b7da 100644 --- a/pkgs/development/libraries/openal-soft/default.nix +++ b/pkgs/development/libraries/openal-soft/default.nix @@ -18,7 +18,9 @@ stdenv.mkDerivation rec { sha256 = "051k5fy8pk4fd9ha3qaqcv08xwbks09xl5qs4ijqq2qz5xaghhd3"; }; - buildInputs = [ cmake ] + nativeBuildInputs = [ cmake ]; + + buildInputs = [] ++ optional alsaSupport alsaLib ++ optional pulseSupport libpulseaudio ++ optionals stdenv.isDarwin [ CoreServices AudioUnit AudioToolbox ]; diff --git a/pkgs/development/libraries/opencv/3.x.nix b/pkgs/development/libraries/opencv/3.x.nix index af0456c0162..5c7972eb2fa 100644 --- a/pkgs/development/libraries/opencv/3.x.nix +++ b/pkgs/development/libraries/opencv/3.x.nix @@ -4,7 +4,7 @@ , enablePNG ? true, libpng , enableTIFF ? true, libtiff , enableWebP ? true, libwebp -, enableEXR ? true, openexr, ilmbase +, enableEXR ? (!stdenv.isDarwin), openexr, ilmbase , enableJPEG2K ? true, jasper , enableIpp ? false @@ -16,6 +16,7 @@ , enableGStreamer ? false, gst_all_1 , enableEigen ? false, eigen , enableCuda ? false, cudatoolkit, gcc5 +, AVFoundation, Cocoa, QTKit }: let @@ -77,6 +78,12 @@ stdenv.mkDerivation rec { ln -s "${bootdescFiles}/$name" "$NIX_BUILD_TOP/opencv_contrib/xfeatures2d/src/$name" done ''); + + # This prevents cmake from using libraries in impure paths (which causes build failure on non NixOS) + postPatch = '' + sed -i '/Add these standard paths to the search paths for FIND_LIBRARY/,/^\s*$/{d}' CMakeLists.txt + ''; + preConfigure = (let version = "20151201"; md5 = "808b791a6eac9ed78d32a7666804320e"; @@ -115,7 +122,7 @@ stdenv.mkDerivation rec { ++ lib.optional enableEigen eigen ++ lib.optionals enableCuda [ cudatoolkit gcc5 ] ++ lib.optional enableContrib protobuf3_1 - ; + ++ lib.optionals stdenv.isDarwin [ AVFoundation Cocoa QTKit ]; propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy; @@ -134,7 +141,8 @@ stdenv.mkDerivation rec { (opencvFlag "CUDA" enableCuda) (opencvFlag "CUBLAS" enableCuda) ] ++ lib.optionals enableCuda [ "-DCUDA_FAST_MATH=ON" ] - ++ lib.optional enableContrib "-DBUILD_PROTOBUF=off"; + ++ lib.optional enableContrib "-DBUILD_PROTOBUF=off" + ++ lib.optionals stdenv.isDarwin ["-DWITH_OPENCL=OFF" "-DWITH_LAPACK=OFF"]; enableParallelBuilding = true; @@ -146,7 +154,7 @@ stdenv.mkDerivation rec { description = "Open Computer Vision Library with more than 500 algorithms"; homepage = http://opencv.org/; license = stdenv.lib.licenses.bsd3; - maintainers = with stdenv.lib.maintainers; [viric flosse mdaiter]; - platforms = with stdenv.lib.platforms; linux; + maintainers = with stdenv.lib.maintainers; [viric mdaiter]; + platforms = with stdenv.lib.platforms; linux ++ darwin; }; } diff --git a/pkgs/development/libraries/opencv/default.nix b/pkgs/development/libraries/opencv/default.nix index 7ea32745ba0..d7824dbed34 100644 --- a/pkgs/development/libraries/opencv/default.nix +++ b/pkgs/development/libraries/opencv/default.nix @@ -5,11 +5,12 @@ , enableJPEG ? true, libjpeg , enablePNG ? true, libpng , enableTIFF ? true, libtiff -, enableEXR ? true, openexr, ilmbase +, enableEXR ? (!stdenv.isDarwin), openexr, ilmbase , enableJPEG2K ? true, jasper , enableFfmpeg ? false, ffmpeg , enableGStreamer ? false, gst_all , enableEigen ? false, eigen +, darwin }: let @@ -34,6 +35,11 @@ stdenv.mkDerivation rec { ./no-build-info.patch ]; + # This prevents cmake from using libraries in impure paths (which causes build failure on non NixOS) + postPatch = '' + sed -i '/Add these standard paths to the search paths for FIND_LIBRARY/,/^\s*$/{d}' CMakeLists.txt + ''; + outputs = [ "out" "dev" ]; buildInputs = @@ -48,6 +54,7 @@ stdenv.mkDerivation rec { ++ lib.optional enableFfmpeg ffmpeg ++ lib.optionals enableGStreamer (with gst_all; [ gstreamer gst-plugins-base ]) ++ lib.optional enableEigen eigen + ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa QTKit ]) ; propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy; @@ -76,11 +83,11 @@ stdenv.mkDerivation rec { passthru = lib.optionalAttrs enablePython { pythonPath = []; }; - meta = { + meta = with stdenv.lib; { description = "Open Computer Vision Library with more than 500 algorithms"; homepage = http://opencv.org/; - license = stdenv.lib.licenses.bsd3; - maintainers = with stdenv.lib.maintainers; [viric flosse]; - platforms = with stdenv.lib.platforms; linux; + license = licenses.bsd3; + maintainers = with maintainers; [ viric ]; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/libraries/opensaml-cpp/default.nix b/pkgs/development/libraries/opensaml-cpp/default.nix new file mode 100644 index 00000000000..c2c102ccf9b --- /dev/null +++ b/pkgs/development/libraries/opensaml-cpp/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchgit, autoreconfHook, boost, openssl, log4shib, xercesc, xml-security-c, xml-tooling-c, zlib }: + +stdenv.mkDerivation rec { + name = "opensaml-cpp-${version}"; + version = "2.6.0"; + + src = fetchgit { + url = "https://git.shibboleth.net/git/cpp-opensaml.git"; + rev = "61193de29e4c9f1ccff7ed7e1f42c2748c62be77"; + sha256 = "1jlxa1f2qn0kd15fzjqp80apxn42v47wg3mx1vk424m31rhi00xr"; + }; + + buildInputs = [ boost openssl log4shib xercesc xml-security-c xml-tooling-c zlib ]; + nativeBuildInputs = [ autoreconfHook ]; + + configureFlags = [ "--with-xmltooling=${xml-tooling-c}" ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = "https://shibboleth.net/products/opensaml-cpp.html"; + description = "A low-level library written in C++ that provides support for producing and consuming SAML messages"; + platforms = platforms.unix; + license = licenses.asl20; + maintainers = [ maintainers.jammerful ]; + }; +} diff --git a/pkgs/development/libraries/pango/default.nix b/pkgs/development/libraries/pango/default.nix index 91f065fa0eb..d8420f69101 100644 --- a/pkgs/development/libraries/pango/default.nix +++ b/pkgs/development/libraries/pango/default.nix @@ -6,14 +6,14 @@ with stdenv.lib; let ver_maj = "1.40"; - ver_min = "4"; + ver_min = "5"; in stdenv.mkDerivation rec { name = "pango-${ver_maj}.${ver_min}"; src = fetchurl { url = "mirror://gnome/sources/pango/${ver_maj}/${name}.tar.xz"; - sha256 = "f8fdc5fc66356dc4edf915048cceeee065a0e0cb70b3b2598f62bda320129a3e"; + sha256 = "24748140456c42360b07b2c77a1a2e1216d07c056632079557cd4e815b9d01c9"; }; outputs = [ "bin" "dev" "out" "devdoc" ]; diff --git a/pkgs/development/libraries/physics/fastnlo/default.nix b/pkgs/development/libraries/physics/fastnlo/default.nix index 307bf1b27db..e07583fccb5 100644 --- a/pkgs/development/libraries/physics/fastnlo/default.nix +++ b/pkgs/development/libraries/physics/fastnlo/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = { - descritption = "A computer code to create and evaluate fast interpolation tables of pre-computed coefficients in perturbation theory for observables in hadron-induced processes"; + description = "A computer code to create and evaluate fast interpolation tables of pre-computed coefficients in perturbation theory for observables in hadron-induced processes"; license = stdenv.lib.licenses.gpl3; homepage = http://fastnlo.hepforge.org; platforms = stdenv.lib.platforms.unix; diff --git a/pkgs/development/libraries/physics/rivet/default.nix b/pkgs/development/libraries/physics/rivet/default.nix index a82c14fee77..f68c2ea877d 100644 --- a/pkgs/development/libraries/physics/rivet/default.nix +++ b/pkgs/development/libraries/physics/rivet/default.nix @@ -28,8 +28,8 @@ stdenv.mkDerivation rec { xcolor xkeyval ;}; - buildInputs = [ ghostscript hepmc imagemagick python2 latex makeWrapper ]; - propagatedBuildInputs = [ fastjet gsl yoda ]; + buildInputs = [ hepmc imagemagick python2 latex makeWrapper ]; + propagatedBuildInputs = [ fastjet ghostscript gsl yoda ]; preInstall = '' substituteInPlace bin/make-plots \ diff --git a/pkgs/development/libraries/physics/yoda/default.nix b/pkgs/development/libraries/physics/yoda/default.nix index c1f0d3a2930..e6d0f3c500e 100644 --- a/pkgs/development/libraries/physics/yoda/default.nix +++ b/pkgs/development/libraries/physics/yoda/default.nix @@ -1,17 +1,29 @@ -{ stdenv, fetchurl, python2Packages, makeWrapper }: +{ stdenv, fetchurl, fetchpatch, python2Packages, root, makeWrapper, withRootSupport ? false }: stdenv.mkDerivation rec { name = "yoda-${version}"; - version = "1.6.5"; + version = "1.6.6"; src = fetchurl { url = "http://www.hepforge.org/archive/yoda/YODA-${version}.tar.bz2"; - sha256 = "1i8lmj63cd3qnxl9k2cb1abap2pirhx7ffinm834wbpy9iszwxql"; + sha256 = "088xx4q6b03bnj6xg5189m8wsznhal8aj3jk40sbj24idm4jl5yg"; }; pythonPath = []; # python wrapper support - buildInputs = with python2Packages; [ python numpy matplotlib makeWrapper ]; + patches = [ + (fetchpatch { + url = "https://yoda.hepforge.org/hg/yoda/rev/3dbc8927e715?style=raw"; + sha256 = "02rm34z9lbab66p7gpij12qwdph5fddpksg80qz0m537wjwy2ddy"; + }) + (fetchpatch { + url = "https://yoda.hepforge.org/hg/yoda/rev/669c2be582ef?style=raw"; + sha256 = "0s705cl3bazpvpvy46vv1k223knwxq2yy5na1c6lv217sq9w86wj"; + }) + ]; + + buildInputs = with python2Packages; [ python numpy matplotlib makeWrapper ] + ++ stdenv.lib.optional withRootSupport root; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/qt-4.x/4.8/default.nix b/pkgs/development/libraries/qt-4.x/4.8/default.nix index 46bb7a4e8fa..18f2e7611a9 100644 --- a/pkgs/development/libraries/qt-4.x/4.8/default.nix +++ b/pkgs/development/libraries/qt-4.x/4.8/default.nix @@ -6,7 +6,8 @@ , buildMultimedia ? stdenv.isLinux, alsaLib, gstreamer, gst-plugins-base , buildWebkit ? (stdenv.isLinux || stdenv.isDarwin) , flashplayerFix ? false, gdk_pixbuf -, gtkStyle ? false, libgnomeui, gtk2, GConf, gnome_vfs +, gtkStyle ? true, gtk2 +, gnomeStyle ? false, libgnomeui, GConf, gnome_vfs , developerBuild ? false , docs ? false , examples ? false @@ -73,14 +74,15 @@ stdenv.mkDerivation rec { glibc = stdenv.cc.libc.out; openglDriver = if mesaSupported then mesa.driverLink else "/no-such-path"; }) - ] ++ stdenv.lib.optional gtkStyle (substituteAll { + ] ++ stdenv.lib.optional gtkStyle (substituteAll ({ src = ./dlopen-gtkstyle.diff; # substituteAll ignores env vars starting with capital letter - gconf = GConf.out; gtk = gtk2.out; + } // stdenv.lib.optionalAttrs gnomeStyle { + gconf = GConf.out; libgnomeui = libgnomeui.out; gnome_vfs = gnome_vfs.out; - }) + })) ++ stdenv.lib.optional flashplayerFix (substituteAll { src = ./dlopen-webkit-nsplugin.diff; gtk = gtk2.out; diff --git a/pkgs/development/libraries/qt-5/5.6/qtbase/default.nix b/pkgs/development/libraries/qt-5/5.6/qtbase/default.nix index b26fc7faf9d..289a1bbac6c 100644 --- a/pkgs/development/libraries/qt-5/5.6/qtbase/default.nix +++ b/pkgs/development/libraries/qt-5/5.6/qtbase/default.nix @@ -104,6 +104,8 @@ stdenv.mkDerivation { -importdir $out/lib/qt5/imports \ -qmldir $out/lib/qt5/qml \ -docdir $out/share/doc/qt5" + + NIX_CFLAGS_COMPILE+=" -DNIXPKGS_QPA_PLATFORM_PLUGIN_PATH=\"''${!outputLib}/lib/qt5/plugins/platforms\"" ''; prefixKey = "-prefix "; diff --git a/pkgs/development/libraries/qt-5/5.6/qtbase/nix-profiles-library-paths.patch b/pkgs/development/libraries/qt-5/5.6/qtbase/nix-profiles-library-paths.patch index d454a74109a..68163fc0c31 100644 --- a/pkgs/development/libraries/qt-5/5.6/qtbase/nix-profiles-library-paths.patch +++ b/pkgs/development/libraries/qt-5/5.6/qtbase/nix-profiles-library-paths.patch @@ -1,22 +1,20 @@ -Index: qtbase-opensource-src-5.6.0/src/corelib/kernel/qcoreapplication.cpp +Index: qtbase-opensource-src-5.6.2/src/corelib/kernel/qcoreapplication.cpp =================================================================== ---- qtbase-opensource-src-5.6.0.orig/src/corelib/kernel/qcoreapplication.cpp -+++ qtbase-opensource-src-5.6.0/src/corelib/kernel/qcoreapplication.cpp -@@ -2533,7 +2533,17 @@ QStringList QCoreApplication::libraryPat +--- qtbase-opensource-src-5.6.2.orig/src/corelib/kernel/qcoreapplication.cpp ++++ qtbase-opensource-src-5.6.2/src/corelib/kernel/qcoreapplication.cpp +@@ -2533,6 +2533,15 @@ QStringList QCoreApplication::libraryPat QStringList *app_libpaths = new QStringList; coreappdata()->app_libpaths.reset(app_libpaths); + // Add library paths derived from NIX_PROFILES. + const QByteArrayList profiles = qgetenv("NIX_PROFILES").split(' '); + const QString plugindir = QString::fromLatin1("/lib/qt5/plugins"); -+ Q_FOREACH (const QByteArray &profile, profiles) { ++ for (const QByteArray &profile: profiles) { + if (!profile.isEmpty()) { + app_libpaths->append(QFile::decodeName(profile) + plugindir); + } + } + const QByteArray libPathEnv = qgetenv("QT_PLUGIN_PATH"); -+ qunsetenv("QT_PLUGIN_PATH"); // do not propagate to child processes if (!libPathEnv.isEmpty()) { QStringList paths = QFile::decodeName(libPathEnv).split(QDir::listSeparator(), QString::SkipEmptyParts); - for (QStringList::const_iterator it = paths.constBegin(); it != paths.constEnd(); ++it) { diff --git a/pkgs/development/libraries/qt-5/5.6/qtbase/qpa-platform-plugin-path.patch b/pkgs/development/libraries/qt-5/5.6/qtbase/qpa-platform-plugin-path.patch new file mode 100644 index 00000000000..32d9dcad622 --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.6/qtbase/qpa-platform-plugin-path.patch @@ -0,0 +1,43 @@ +Index: qtbase-opensource-src-5.6.2/src/gui/kernel/qplatformintegrationfactory.cpp +=================================================================== +--- qtbase-opensource-src-5.6.2.orig/src/gui/kernel/qplatformintegrationfactory.cpp ++++ qtbase-opensource-src-5.6.2/src/gui/kernel/qplatformintegrationfactory.cpp +@@ -67,9 +67,10 @@ QPlatformIntegration *QPlatformIntegrati + // Try loading the plugin from platformPluginPath first: + if (!platformPluginPath.isEmpty()) { + QCoreApplication::addLibraryPath(platformPluginPath); +- if (QPlatformIntegration *ret = loadIntegration(directLoader(), platform, paramList, argc, argv)) +- return ret; + } ++ QCoreApplication::addLibraryPath(QStringLiteral(NIXPKGS_QPA_PLATFORM_PLUGIN_PATH)); ++ if (QPlatformIntegration *ret = loadIntegration(directLoader(), platform, paramList, argc, argv)) ++ return ret; + if (QPlatformIntegration *ret = loadIntegration(loader(), platform, paramList, argc, argv)) + return ret; + #else +@@ -95,15 +96,16 @@ QStringList QPlatformIntegrationFactory: + QStringList list; + if (!platformPluginPath.isEmpty()) { + QCoreApplication::addLibraryPath(platformPluginPath); +- list = directLoader()->keyMap().values(); +- if (!list.isEmpty()) { +- const QString postFix = QStringLiteral(" (from ") +- + QDir::toNativeSeparators(platformPluginPath) +- + QLatin1Char(')'); +- const QStringList::iterator end = list.end(); +- for (QStringList::iterator it = list.begin(); it != end; ++it) +- (*it).append(postFix); +- } ++ } ++ QCoreApplication::addLibraryPath(QStringLiteral(NIXPKGS_QPA_PLATFORM_PLUGIN_PATH)); ++ list = directLoader()->keyMap().values(); ++ if (!list.isEmpty()) { ++ const QString postFix = QStringLiteral(" (from ") ++ + QDir::toNativeSeparators(platformPluginPath) ++ + QLatin1Char(')'); ++ const QStringList::iterator end = list.end(); ++ for (QStringList::iterator it = list.begin(); it != end; ++it) ++ (*it).append(postFix); + } + list.append(loader()->keyMap().values()); + return list; diff --git a/pkgs/development/libraries/qt-5/5.6/qtbase/series b/pkgs/development/libraries/qt-5/5.6/qtbase/series index 2196d838375..3527a91c84d 100644 --- a/pkgs/development/libraries/qt-5/5.6/qtbase/series +++ b/pkgs/development/libraries/qt-5/5.6/qtbase/series @@ -7,3 +7,4 @@ xdg-config-dirs.patch nix-profiles-library-paths.patch compose-search-path.patch libressl.patch +qpa-platform-plugin-path.patch diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths-darwin.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths-darwin.patch deleted file mode 100644 index da7f36542ef..00000000000 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths-darwin.patch +++ /dev/null @@ -1,384 +0,0 @@ -Index: qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in -+++ qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in -@@ -9,30 +9,6 @@ if (CMAKE_VERSION VERSION_LESS 3.0.0) - endif() - !!ENDIF - --!!IF !isEmpty(CMAKE_USR_MOVE_WORKAROUND) --!!IF !isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) --set(_qt5$${CMAKE_MODULE_NAME}_install_prefix \"$$[QT_INSTALL_PREFIX]\") --!!ELSE --get_filename_component(_IMPORT_PREFIX \"${CMAKE_CURRENT_LIST_FILE}\" PATH) --# Use original install prefix when loaded through a --# cross-prefix symbolic link such as /lib -> /usr/lib. --get_filename_component(_realCurr \"${_IMPORT_PREFIX}\" REALPATH) --get_filename_component(_realOrig \"$$CMAKE_INSTALL_LIBS_DIR/cmake/Qt5$${CMAKE_MODULE_NAME}\" REALPATH) --if(_realCurr STREQUAL _realOrig) -- get_filename_component(_qt5$${CMAKE_MODULE_NAME}_install_prefix \"$$CMAKE_INSTALL_LIBS_DIR/$${CMAKE_RELATIVE_INSTALL_LIBS_DIR}\" ABSOLUTE) --else() -- get_filename_component(_qt5$${CMAKE_MODULE_NAME}_install_prefix \"${CMAKE_CURRENT_LIST_DIR}/$${CMAKE_RELATIVE_INSTALL_DIR}\" ABSOLUTE) --endif() --unset(_realOrig) --unset(_realCurr) --unset(_IMPORT_PREFIX) --!!ENDIF --!!ELIF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) --get_filename_component(_qt5$${CMAKE_MODULE_NAME}_install_prefix \"${CMAKE_CURRENT_LIST_DIR}/$${CMAKE_RELATIVE_INSTALL_DIR}\" ABSOLUTE) --!!ELSE --set(_qt5$${CMAKE_MODULE_NAME}_install_prefix \"$$[QT_INSTALL_PREFIX]\") --!!ENDIF -- - !!IF !equals(TEMPLATE, aux) - # For backwards compatibility only. Use Qt5$${CMAKE_MODULE_NAME}_VERSION instead. - set(Qt5$${CMAKE_MODULE_NAME}_VERSION_STRING "$$eval(QT.$${MODULE}.MAJOR_VERSION).$$eval(QT.$${MODULE}.MINOR_VERSION).$$eval(QT.$${MODULE}.PATCH_VERSION)") -@@ -59,7 +35,10 @@ macro(_populate_$${CMAKE_MODULE_NAME}_ta - set_property(TARGET Qt5::$${CMAKE_MODULE_NAME} APPEND PROPERTY IMPORTED_CONFIGURATIONS ${Configuration}) - - !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_DLL_DIR}${LIB_LOCATION}\") -+ set(imported_location \"@NIX_OUT@/$${CMAKE_DLL_DIR}${LIB_LOCATION}\") -+ if(NOT EXISTS \"${imported_location}\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_DLL_DIR}${LIB_LOCATION}\") -+ endif() - !!ELSE - set(imported_location \"$${CMAKE_DLL_DIR}${LIB_LOCATION}\") - !!ENDIF -@@ -74,45 +53,17 @@ macro(_populate_$${CMAKE_MODULE_NAME}_ta - \"IMPORTED_LINK_INTERFACE_LIBRARIES_${Configuration}\" \"${_Qt5$${CMAKE_MODULE_NAME}_LIB_DEPENDENCIES}\" - ) - --!!IF !isEmpty(CMAKE_WINDOWS_BUILD) --!!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- set(imported_implib \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") --!!ELSE -- set(imported_implib \"IMPORTED_IMPLIB_${Configuration}\" \"$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") --!!ENDIF -- _qt5_$${CMAKE_MODULE_NAME}_check_file_exists(${imported_implib}) -- if(NOT \"${IMPLIB_LOCATION}\" STREQUAL \"\") -- set_target_properties(Qt5::$${CMAKE_MODULE_NAME} PROPERTIES -- \"IMPORTED_IMPLIB_${Configuration}\" ${imported_implib} -- ) -- endif() --!!ENDIF - endmacro() - !!ENDIF - - if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME}) - - !!IF !no_module_headers --!!IF !isEmpty(CMAKE_BUILD_IS_FRAMEWORK) -- set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework\" -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Headers\" -- ) --!!IF isEmpty(CMAKE_NO_PRIVATE_INCLUDES) -- set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/\" -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/$${MODULE_INCNAME}\" -- ) --!!ELSE -- set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") --!!ENDIF --!!ELSE - !!IF isEmpty(CMAKE_INCLUDE_DIR_IS_ABSOLUTE) -- set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$$CMAKE_INCLUDE_DIR\" \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_INCLUDE_DIR}$${MODULE_INCNAME}\") -+ set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS \"@NIX_OUT@/lib\" \"@NIX_OUT@/lib/$${MODULE_INCNAME}.framework/Headers\") - !!IF isEmpty(CMAKE_NO_PRIVATE_INCLUDES) - set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_INCLUDE_DIR}$${MODULE_INCNAME}/$$VERSION\" -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_INCLUDE_DIR}$${MODULE_INCNAME}/$$VERSION/$${MODULE_INCNAME}\" -+ \"\" - ) - !!ELSE - set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") -@@ -128,7 +80,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") - !!ENDIF - !!ENDIF --!!ENDIF -+ - !!IF !isEmpty(CMAKE_ADD_SOURCE_INCLUDE_DIRS) - include(\"${CMAKE_CURRENT_LIST_DIR}/ExtraSourceIncludes.cmake\" OPTIONAL) - !!ENDIF -@@ -253,28 +205,19 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - - !!IF !isEmpty(CMAKE_FIND_OTHER_LIBRARY_BUILD) - !!IF isEmpty(CMAKE_DEBUG_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) --!!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- if (EXISTS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE -- if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE -- _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" \"\" ) --!!ELSE // CMAKE_STATIC_WINDOWS_BUILD - if (EXISTS - !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" -+ \"@NIX_OUT@/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" - !!ELSE - \"$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" - !!ENDIF - AND EXISTS - !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) -+ \"@NIX_DEV@/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) - !!ELSE - \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) - !!ENDIF - _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - endif() - !!ENDIF // CMAKE_DEBUG_TYPE - !!ENDIF // CMAKE_FIND_OTHER_LIBRARY_BUILD -@@ -282,36 +225,23 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - !!ENDIF // CMAKE_RELEASE_TYPE - - !!IF !isEmpty(CMAKE_DEBUG_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) -- _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" \"\" ) --!!ELSE - _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - - !!IF !isEmpty(CMAKE_FIND_OTHER_LIBRARY_BUILD) - !!IF isEmpty(CMAKE_RELEASE_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) --!!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- if (EXISTS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE -- if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE -- _populate_$${CMAKE_MODULE_NAME}_target_properties(RELEASE \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" \"\" ) --!!ELSE // CMAKE_STATIC_WINDOWS_BUILD - if (EXISTS - !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" -+ \"@NIX_OUT@/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" - !!ELSE - \"$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" - !!ENDIF - AND EXISTS - !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) -+ \"@NIX_DEV@/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) - !!ELSE - \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) - !!ENDIF - _populate_$${CMAKE_MODULE_NAME}_target_properties(RELEASE \"$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - endif() - !!ENDIF // CMAKE_RELEASE_TYPE - !!ENDIF // CMAKE_FIND_OTHER_LIBRARY_BUILD -@@ -328,11 +258,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - macro(_populate_$${CMAKE_MODULE_NAME}_plugin_properties Plugin Configuration PLUGIN_LOCATION) - set_property(TARGET Qt5::${Plugin} APPEND PROPERTY IMPORTED_CONFIGURATIONS ${Configuration}) - --!!IF isEmpty(CMAKE_PLUGIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_PLUGIN_DIR}${PLUGIN_LOCATION}\") --!!ELSE -- set(imported_location \"$${CMAKE_PLUGIN_DIR}${PLUGIN_LOCATION}\") --!!ENDIF -+ set(imported_location \"${PLUGIN_LOCATION}\") - _qt5_$${CMAKE_MODULE_NAME}_check_file_exists(${imported_location}) - set_target_properties(Qt5::${Plugin} PROPERTIES - \"IMPORTED_LOCATION_${Configuration}\" ${imported_location} -Index: qtbase-opensource-src-5.8.0/src/gui/Qt5GuiConfigExtras.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/gui/Qt5GuiConfigExtras.cmake.in -+++ qtbase-opensource-src-5.8.0/src/gui/Qt5GuiConfigExtras.cmake.in -@@ -2,7 +2,7 @@ - !!IF !isEmpty(CMAKE_ANGLE_EGL_DLL_RELEASE) - - !!IF isEmpty(CMAKE_INCLUDE_DIR_IS_ABSOLUTE) --set(Qt5Gui_EGL_INCLUDE_DIRS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$$CMAKE_INCLUDE_DIR/QtANGLE\") -+set(Qt5Gui_EGL_INCLUDE_DIRS \"@NIX_DEV@/$$CMAKE_INCLUDE_DIR/QtANGLE\") - !!ELSE - set(Qt5Gui_EGL_INCLUDE_DIRS \"$$CMAKE_INCLUDE_DIR/QtANGLE\") - !!ENDIF -@@ -17,13 +17,13 @@ macro(_populate_qt5gui_gl_target_propert - set_property(TARGET Qt5::${TargetName} APPEND PROPERTY IMPORTED_CONFIGURATIONS ${Configuration}) - - !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Gui_install_prefix}/$${CMAKE_DLL_DIR}${LIB_LOCATION}\") -+ set(imported_location \"@NIX_OUT@/$${CMAKE_DLL_DIR}${LIB_LOCATION}\") - !!ELSE - set(imported_location \"$${CMAKE_DLL_DIR}${LIB_LOCATION}\") - !!ENDIF - - !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- set(imported_implib \"${_qt5Gui_install_prefix}/$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") -+ set(imported_implib \"@NIX_DEV@/$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") - !!ELSE - set(imported_implib \"$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/widgets/Qt5WidgetsConfigExtras.cmake.in -+++ qtbase-opensource-src-5.8.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in -@@ -3,7 +3,7 @@ if (NOT TARGET Qt5::uic) - add_executable(Qt5::uic IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Widgets_install_prefix}/$${CMAKE_BIN_DIR}uic$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}uic$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}uic$$CMAKE_BIN_SUFFIX\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtras.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtras.cmake.in -+++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtras.cmake.in -@@ -3,7 +3,7 @@ if (NOT TARGET Qt5::qmake) - add_executable(Qt5::qmake IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Core_install_prefix}/$${CMAKE_BIN_DIR}qmake$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}qmake$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}qmake$$CMAKE_BIN_SUFFIX\") - !!ENDIF -@@ -18,7 +18,7 @@ if (NOT TARGET Qt5::moc) - add_executable(Qt5::moc IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Core_install_prefix}/$${CMAKE_BIN_DIR}moc$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}moc$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}moc$$CMAKE_BIN_SUFFIX\") - !!ENDIF -@@ -35,7 +35,7 @@ if (NOT TARGET Qt5::rcc) - add_executable(Qt5::rcc IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Core_install_prefix}/$${CMAKE_BIN_DIR}rcc$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}rcc$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}rcc$$CMAKE_BIN_SUFFIX\") - !!ENDIF -@@ -131,7 +131,7 @@ if (NOT TARGET Qt5::WinMain) - !!IF !isEmpty(CMAKE_RELEASE_TYPE) - set_property(TARGET Qt5::WinMain APPEND PROPERTY IMPORTED_CONFIGURATIONS RELEASE) - !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Core_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_RELEASE}\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_RELEASE}\") - !!ELSE - set(imported_location \"$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_RELEASE}\") - !!ENDIF -@@ -145,7 +145,7 @@ if (NOT TARGET Qt5::WinMain) - set_property(TARGET Qt5::WinMain APPEND PROPERTY IMPORTED_CONFIGURATIONS DEBUG) - - !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5Core_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_DEBUG}\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_DEBUG}\") - !!ELSE - set(imported_location \"$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_DEBUG}\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in -+++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in -@@ -1,6 +1,6 @@ - - !!IF isEmpty(CMAKE_INSTALL_DATA_DIR_IS_ABSOLUTE) --set(_qt5_corelib_extra_includes \"${_qt5Core_install_prefix}/$${CMAKE_INSTALL_DATA_DIR}/mkspecs/$${CMAKE_MKSPEC}\") -+set(_qt5_corelib_extra_includes \"@NIX_DEV@/$${CMAKE_INSTALL_DATA_DIR}/mkspecs/$${CMAKE_MKSPEC}\") - !!ELSE - set(_qt5_corelib_extra_includes \"$${CMAKE_INSTALL_DATA_DIR}mkspecs/$${CMAKE_MKSPEC}\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in -+++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in -@@ -1,6 +1,6 @@ - - !!IF isEmpty(CMAKE_HOST_DATA_DIR_IS_ABSOLUTE) --set(_qt5_corelib_extra_includes \"${_qt5Core_install_prefix}/$${CMAKE_HOST_DATA_DIR}/mkspecs/$${CMAKE_MKSPEC}\") -+set(_qt5_corelib_extra_includes \"@NIX_DEV@/$${CMAKE_HOST_DATA_DIR}/mkspecs/$${CMAKE_MKSPEC}\") - !!ELSE - set(_qt5_corelib_extra_includes \"$${CMAKE_HOST_DATA_DIR}mkspecs/$${CMAKE_MKSPEC}\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/src/dbus/Qt5DBusConfigExtras.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/src/dbus/Qt5DBusConfigExtras.cmake.in -+++ qtbase-opensource-src-5.8.0/src/dbus/Qt5DBusConfigExtras.cmake.in -@@ -3,7 +3,7 @@ if (NOT TARGET Qt5::qdbuscpp2xml) - add_executable(Qt5::qdbuscpp2xml IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5DBus_install_prefix}/$${CMAKE_BIN_DIR}qdbuscpp2xml$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}qdbuscpp2xml$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}qdbuscpp2xml$$CMAKE_BIN_SUFFIX\") - !!ENDIF -@@ -18,7 +18,7 @@ if (NOT TARGET Qt5::qdbusxml2cpp) - add_executable(Qt5::qdbusxml2cpp IMPORTED) - - !!IF isEmpty(CMAKE_BIN_DIR_IS_ABSOLUTE) -- set(imported_location \"${_qt5DBus_install_prefix}/$${CMAKE_BIN_DIR}qdbusxml2cpp$$CMAKE_BIN_SUFFIX\") -+ set(imported_location \"@NIX_DEV@/$${CMAKE_BIN_DIR}qdbusxml2cpp$$CMAKE_BIN_SUFFIX\") - !!ELSE - set(imported_location \"$${CMAKE_BIN_DIR}qdbusxml2cpp$$CMAKE_BIN_SUFFIX\") - !!ENDIF -Index: qtbase-opensource-src-5.8.0/mkspecs/features/create_cmake.prf -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/mkspecs/features/create_cmake.prf -+++ qtbase-opensource-src-5.8.0/mkspecs/features/create_cmake.prf -@@ -136,28 +136,28 @@ contains(CONFIG, plugin) { - - win32 { - isEmpty(CMAKE_STATIC_TYPE) { -- CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/$${TARGET}.dll -- CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/$${TARGET}d.dll -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/$${TARGET}.dll -+ CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/$${TARGET}d.dll - } else:mingw { -- CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/lib$${TARGET}.a -- CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/lib$${TARGET}d.a -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}/$$PLUGIN_TYPE/lib$${TARGET}.a -+ CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}d.a - } else { # MSVC static -- CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/$${TARGET}.lib -- CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/$${TARGET}d.lib -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/$${TARGET}.lib -+ CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/$${TARGET}d.lib - } - } else { - mac { - isEmpty(CMAKE_STATIC_TYPE): CMAKE_PlUGIN_EXT = .dylib - else: CMAKE_PlUGIN_EXT = .a - -- CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -- CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -+ CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} - } else { - isEmpty(CMAKE_STATIC_TYPE): CMAKE_PlUGIN_EXT = .so - else: CMAKE_PlUGIN_EXT = .a - -- CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -- CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} -+ CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}$${CMAKE_PlUGIN_EXT} - } - } - cmake_target_file.input = $$PWD/data/cmake/Qt5PluginTarget.cmake.in -Index: qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -=================================================================== ---- qtbase-opensource-src-5.8.0.orig/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -+++ qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -@@ -2,10 +2,10 @@ - add_library(Qt5::$$CMAKE_PLUGIN_NAME MODULE IMPORTED) - - !!IF !isEmpty(CMAKE_RELEASE_TYPE) --_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"$${CMAKE_PLUGIN_LOCATION_RELEASE}\") -+_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_RELEASE}\") - !!ENDIF - !!IF !isEmpty(CMAKE_DEBUG_TYPE) --_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"$${CMAKE_PLUGIN_LOCATION_DEBUG}\") -+_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_DEBUG}\") - !!ENDIF - - list(APPEND Qt5$${CMAKE_MODULE_NAME}_PLUGINS Qt5::$$CMAKE_PLUGIN_NAME) diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths.patch index 0d5c2d51092..c43653558e3 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/cmake-paths.patch @@ -1,7 +1,7 @@ -Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in +Index: qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in -+++ qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in +--- qtbase-opensource-src-5.8.0.orig/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in ++++ qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in @@ -9,30 +9,6 @@ if (CMAKE_VERSION VERSION_LESS 3.0.0) endif() !!ENDIF @@ -45,7 +45,7 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm !!ELSE set(imported_location \"$${CMAKE_DLL_DIR}${LIB_LOCATION}\") !!ENDIF -@@ -74,45 +53,18 @@ macro(_populate_$${CMAKE_MODULE_NAME}_ta +@@ -74,19 +53,6 @@ macro(_populate_$${CMAKE_MODULE_NAME}_ta \"IMPORTED_LINK_INTERFACE_LIBRARIES_${Configuration}\" \"${_Qt5$${CMAKE_MODULE_NAME}_LIB_DEPENDENCIES}\" ) @@ -65,23 +65,26 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm endmacro() !!ENDIF - if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME}) - +@@ -95,24 +61,24 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME !!IF !no_module_headers --!!IF !isEmpty(CMAKE_BUILD_IS_FRAMEWORK) -- set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS + !!IF !isEmpty(CMAKE_BUILD_IS_FRAMEWORK) + set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework\" - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Headers\" -- ) --!!IF isEmpty(CMAKE_NO_PRIVATE_INCLUDES) -- set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS ++ \"@NIX_OUT@/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework\" ++ \"@NIX_OUT@/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Headers\" + ) + !!IF isEmpty(CMAKE_NO_PRIVATE_INCLUDES) + set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/\" - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/$${MODULE_INCNAME}\" -- ) --!!ELSE -- set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") --!!ENDIF --!!ELSE ++ \"@NIX_OUT@/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/\" ++ \"@NIX_OUT@/$${CMAKE_LIB_DIR}Qt$${CMAKE_MODULE_NAME}.framework/Versions/$$section(VERSION, ., 0, 0)/Headers/$$VERSION/$${MODULE_INCNAME}\" + ) + !!ELSE + set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") + !!ENDIF + !!ELSE !!IF isEmpty(CMAKE_INCLUDE_DIR_IS_ABSOLUTE) - set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$$CMAKE_INCLUDE_DIR\" \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_INCLUDE_DIR}$${MODULE_INCNAME}\") + set(_Qt5$${CMAKE_MODULE_NAME}_OWN_INCLUDE_DIRS \"@NIX_DEV@/$$CMAKE_INCLUDE_DIR\" \"@NIX_DEV@/$${CMAKE_INCLUDE_DIR}$${MODULE_INCNAME}\") @@ -94,27 +97,17 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm ) !!ELSE set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") -@@ -128,7 +80,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - set(Qt5$${CMAKE_MODULE_NAME}_PRIVATE_INCLUDE_DIRS \"\") - !!ENDIF - !!ENDIF --!!ENDIF -+ - !!IF !isEmpty(CMAKE_ADD_SOURCE_INCLUDE_DIRS) - include(\"${CMAKE_CURRENT_LIST_DIR}/ExtraSourceIncludes.cmake\" OPTIONAL) - !!ENDIF -@@ -253,28 +205,19 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - - !!IF !isEmpty(CMAKE_FIND_OTHER_LIBRARY_BUILD) +@@ -255,7 +221,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME !!IF isEmpty(CMAKE_DEBUG_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) --!!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) + !!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) + !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) - if (EXISTS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE -- if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE -- _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" \"\" ) --!!ELSE // CMAKE_STATIC_WINDOWS_BUILD ++ if (EXISTS \"@NIX_OUT@/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) + !!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE + if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) + !!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE +@@ -263,13 +229,13 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME + !!ELSE // CMAKE_STATIC_WINDOWS_BUILD if (EXISTS !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" @@ -129,31 +122,17 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm !!ELSE \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) !!ENDIF - _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - endif() - !!ENDIF // CMAKE_DEBUG_TYPE - !!ENDIF // CMAKE_FIND_OTHER_LIBRARY_BUILD -@@ -282,36 +225,23 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME - !!ENDIF // CMAKE_RELEASE_TYPE - - !!IF !isEmpty(CMAKE_DEBUG_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) -- _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" \"\" ) --!!ELSE - _populate_$${CMAKE_MODULE_NAME}_target_properties(DEBUG \"$${CMAKE_LIB_FILE_LOCATION_DEBUG}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_DEBUG}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - - !!IF !isEmpty(CMAKE_FIND_OTHER_LIBRARY_BUILD) +@@ -292,7 +258,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME !!IF isEmpty(CMAKE_RELEASE_TYPE) --!!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) --!!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) + !!IF !isEmpty(CMAKE_STATIC_WINDOWS_BUILD) + !!IF isEmpty(CMAKE_LIB_DIR_IS_ABSOLUTE) - if (EXISTS \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE -- if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE -- _populate_$${CMAKE_MODULE_NAME}_target_properties(RELEASE \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" \"\" ) --!!ELSE // CMAKE_STATIC_WINDOWS_BUILD ++ if (EXISTS \"@NIX_DEV@/$${CMAKE_LIB_DIR}$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) + !!ELSE // CMAKE_LIB_DIR_IS_ABSOLUTE + if (EXISTS \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) + !!ENDIF // CMAKE_LIB_DIR_IS_ABSOLUTE +@@ -300,13 +266,13 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME + !!ELSE // CMAKE_STATIC_WINDOWS_BUILD if (EXISTS !!IF isEmpty(CMAKE_DLL_DIR_IS_ABSOLUTE) - \"${_qt5$${CMAKE_MODULE_NAME}_install_prefix}/$${CMAKE_DLL_DIR}$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" @@ -168,12 +147,7 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm !!ELSE \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) !!ENDIF - _populate_$${CMAKE_MODULE_NAME}_target_properties(RELEASE \"$${CMAKE_LIB_FILE_LOCATION_RELEASE}\" \"$${CMAKE_IMPLIB_FILE_LOCATION_RELEASE}\" ) --!!ENDIF // CMAKE_STATIC_WINDOWS_BUILD - endif() - !!ENDIF // CMAKE_RELEASE_TYPE - !!ENDIF // CMAKE_FIND_OTHER_LIBRARY_BUILD -@@ -328,11 +258,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME +@@ -328,11 +294,7 @@ if (NOT TARGET Qt5::$${CMAKE_MODULE_NAME macro(_populate_$${CMAKE_MODULE_NAME}_plugin_properties Plugin Configuration PLUGIN_LOCATION) set_property(TARGET Qt5::${Plugin} APPEND PROPERTY IMPORTED_CONFIGURATIONS ${Configuration}) @@ -186,10 +160,10 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5BasicConfig.cm _qt5_$${CMAKE_MODULE_NAME}_check_file_exists(${imported_location}) set_target_properties(Qt5::${Plugin} PROPERTIES \"IMPORTED_LOCATION_${Configuration}\" ${imported_location} -Index: qtbase-opensource-src-5.7.0/src/gui/Qt5GuiConfigExtras.cmake.in +Index: qtbase-opensource-src-5.8.0/src/gui/Qt5GuiConfigExtras.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/gui/Qt5GuiConfigExtras.cmake.in -+++ qtbase-opensource-src-5.7.0/src/gui/Qt5GuiConfigExtras.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/gui/Qt5GuiConfigExtras.cmake.in ++++ qtbase-opensource-src-5.8.0/src/gui/Qt5GuiConfigExtras.cmake.in @@ -2,7 +2,7 @@ !!IF !isEmpty(CMAKE_ANGLE_EGL_DLL_RELEASE) @@ -215,10 +189,10 @@ Index: qtbase-opensource-src-5.7.0/src/gui/Qt5GuiConfigExtras.cmake.in !!ELSE set(imported_implib \"$${CMAKE_LIB_DIR}${IMPLIB_LOCATION}\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in +Index: qtbase-opensource-src-5.8.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/widgets/Qt5WidgetsConfigExtras.cmake.in -+++ qtbase-opensource-src-5.7.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/widgets/Qt5WidgetsConfigExtras.cmake.in ++++ qtbase-opensource-src-5.8.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in @@ -3,7 +3,7 @@ if (NOT TARGET Qt5::uic) add_executable(Qt5::uic IMPORTED) @@ -228,10 +202,10 @@ Index: qtbase-opensource-src-5.7.0/src/widgets/Qt5WidgetsConfigExtras.cmake.in !!ELSE set(imported_location \"$${CMAKE_BIN_DIR}uic$$CMAKE_BIN_SUFFIX\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtras.cmake.in +Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtras.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/Qt5CoreConfigExtras.cmake.in -+++ qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtras.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtras.cmake.in ++++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtras.cmake.in @@ -3,7 +3,7 @@ if (NOT TARGET Qt5::qmake) add_executable(Qt5::qmake IMPORTED) @@ -277,10 +251,10 @@ Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtras.cmake.in !!ELSE set(imported_location \"$${CMAKE_LIB_DIR}$${CMAKE_WINMAIN_FILE_LOCATION_DEBUG}\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in +Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in -+++ qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in ++++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForInstall.cmake.in @@ -1,6 +1,6 @@ !!IF isEmpty(CMAKE_INSTALL_DATA_DIR_IS_ABSOLUTE) @@ -289,10 +263,10 @@ Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDirForIn !!ELSE set(_qt5_corelib_extra_includes \"$${CMAKE_INSTALL_DATA_DIR}mkspecs/$${CMAKE_MKSPEC}\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in +Index: qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in -+++ qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in ++++ qtbase-opensource-src-5.8.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmake.in @@ -1,6 +1,6 @@ !!IF isEmpty(CMAKE_HOST_DATA_DIR_IS_ABSOLUTE) @@ -301,10 +275,10 @@ Index: qtbase-opensource-src-5.7.0/src/corelib/Qt5CoreConfigExtrasMkspecDir.cmak !!ELSE set(_qt5_corelib_extra_includes \"$${CMAKE_HOST_DATA_DIR}mkspecs/$${CMAKE_MKSPEC}\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/src/dbus/Qt5DBusConfigExtras.cmake.in +Index: qtbase-opensource-src-5.8.0/src/dbus/Qt5DBusConfigExtras.cmake.in =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/dbus/Qt5DBusConfigExtras.cmake.in -+++ qtbase-opensource-src-5.7.0/src/dbus/Qt5DBusConfigExtras.cmake.in +--- qtbase-opensource-src-5.8.0.orig/src/dbus/Qt5DBusConfigExtras.cmake.in ++++ qtbase-opensource-src-5.8.0/src/dbus/Qt5DBusConfigExtras.cmake.in @@ -3,7 +3,7 @@ if (NOT TARGET Qt5::qdbuscpp2xml) add_executable(Qt5::qdbuscpp2xml IMPORTED) @@ -323,10 +297,27 @@ Index: qtbase-opensource-src-5.7.0/src/dbus/Qt5DBusConfigExtras.cmake.in !!ELSE set(imported_location \"$${CMAKE_BIN_DIR}qdbusxml2cpp$$CMAKE_BIN_SUFFIX\") !!ENDIF -Index: qtbase-opensource-src-5.7.0/mkspecs/features/create_cmake.prf +Index: qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in +=================================================================== +--- qtbase-opensource-src-5.8.0.orig/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in ++++ qtbase-opensource-src-5.8.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in +@@ -2,10 +2,10 @@ + add_library(Qt5::$$CMAKE_PLUGIN_NAME MODULE IMPORTED) + + !!IF !isEmpty(CMAKE_RELEASE_TYPE) +-_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"$${CMAKE_PLUGIN_LOCATION_RELEASE}\") ++_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_RELEASE}\") + !!ENDIF + !!IF !isEmpty(CMAKE_DEBUG_TYPE) +-_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"$${CMAKE_PLUGIN_LOCATION_DEBUG}\") ++_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_DEBUG}\") + !!ENDIF + + list(APPEND Qt5$${CMAKE_MODULE_NAME}_PLUGINS Qt5::$$CMAKE_PLUGIN_NAME) +Index: qtbase-opensource-src-5.8.0/mkspecs/features/create_cmake.prf =================================================================== ---- qtbase-opensource-src-5.7.0.orig/mkspecs/features/create_cmake.prf -+++ qtbase-opensource-src-5.7.0/mkspecs/features/create_cmake.prf +--- qtbase-opensource-src-5.8.0.orig/mkspecs/features/create_cmake.prf ++++ qtbase-opensource-src-5.8.0/mkspecs/features/create_cmake.prf @@ -136,28 +136,28 @@ contains(CONFIG, plugin) { win32 { @@ -338,7 +329,7 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/create_cmake.prf } else:mingw { - CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/lib$${TARGET}.a - CMAKE_PLUGIN_LOCATION_DEBUG = $$PLUGIN_TYPE/lib$${TARGET}d.a -+ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}/$$PLUGIN_TYPE/lib$${TARGET}.a ++ CMAKE_PLUGIN_LOCATION_RELEASE = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}.a + CMAKE_PLUGIN_LOCATION_DEBUG = $${CMAKE_PLUGIN_DIR}$$PLUGIN_TYPE/lib$${TARGET}d.a } else { # MSVC static - CMAKE_PLUGIN_LOCATION_RELEASE = $$PLUGIN_TYPE/$${TARGET}.lib @@ -366,20 +357,3 @@ Index: qtbase-opensource-src-5.7.0/mkspecs/features/create_cmake.prf } } cmake_target_file.input = $$PWD/data/cmake/Qt5PluginTarget.cmake.in -Index: qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -=================================================================== ---- qtbase-opensource-src-5.7.0.orig/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -+++ qtbase-opensource-src-5.7.0/mkspecs/features/data/cmake/Qt5PluginTarget.cmake.in -@@ -2,10 +2,10 @@ - add_library(Qt5::$$CMAKE_PLUGIN_NAME MODULE IMPORTED) - - !!IF !isEmpty(CMAKE_RELEASE_TYPE) --_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"$${CMAKE_PLUGIN_LOCATION_RELEASE}\") -+_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME RELEASE \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_RELEASE}\") - !!ENDIF - !!IF !isEmpty(CMAKE_DEBUG_TYPE) --_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"$${CMAKE_PLUGIN_LOCATION_DEBUG}\") -+_populate_$${CMAKE_MODULE_NAME}_plugin_properties($$CMAKE_PLUGIN_NAME DEBUG \"@NIX_OUT@/$${CMAKE_PLUGIN_LOCATION_DEBUG}\") - !!ENDIF - - list(APPEND Qt5$${CMAKE_MODULE_NAME}_PLUGINS Qt5::$$CMAKE_PLUGIN_NAME) diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/compose-search-path.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/compose-search-path.patch index a0e344a7bc6..d0bea4afaa3 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/compose-search-path.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/compose-search-path.patch @@ -1,16 +1,18 @@ -Index: qtbase-opensource-src-5.7.0/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp +Index: qtbase-opensource-src-5.8.0/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp -+++ qtbase-opensource-src-5.7.0/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp -@@ -257,10 +257,7 @@ void TableGenerator::initPossibleLocatio - // the QTCOMPOSE environment variable +--- qtbase-opensource-src-5.8.0.orig/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp ++++ qtbase-opensource-src-5.8.0/src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp +@@ -258,12 +258,9 @@ void TableGenerator::initPossibleLocatio + m_possibleLocations.reserve(7); if (qEnvironmentVariableIsSet("QTCOMPOSE")) m_possibleLocations.append(QString::fromLocal8Bit(qgetenv("QTCOMPOSE"))); - m_possibleLocations.append(QStringLiteral("/usr/share/X11/locale")); - m_possibleLocations.append(QStringLiteral("/usr/local/share/X11/locale")); - m_possibleLocations.append(QStringLiteral("/usr/lib/X11/locale")); - m_possibleLocations.append(QStringLiteral("/usr/local/lib/X11/locale")); -+ m_possibleLocations.append(QStringLiteral("${libX11}/share/X11/locale")); m_possibleLocations.append(QStringLiteral(X11_PREFIX "/share/X11/locale")); m_possibleLocations.append(QStringLiteral(X11_PREFIX "/lib/X11/locale")); ++ m_possibleLocations.append(QStringLiteral(NIXPKGS_QTCOMPOSE)); } + + QString TableGenerator::findComposeFile() diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/decrypt-ssl-traffic.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/decrypt-ssl-traffic.patch deleted file mode 100644 index 495db07cfbb..00000000000 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/decrypt-ssl-traffic.patch +++ /dev/null @@ -1,13 +0,0 @@ -Index: qtbase-opensource-src-5.5.1/src/network/ssl/qsslsocket_openssl.cpp -=================================================================== ---- qtbase-opensource-src-5.5.1.orig/src/network/ssl/qsslsocket_openssl.cpp -+++ qtbase-opensource-src-5.5.1/src/network/ssl/qsslsocket_openssl.cpp -@@ -48,7 +48,7 @@ - ****************************************************************************/ - - //#define QSSLSOCKET_DEBUG --//#define QT_DECRYPT_SSL_TRAFFIC -+#define QT_DECRYPT_SSL_TRAFFIC - - #include "qssl_p.h" - #include "qsslsocket_openssl_p.h" diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/default.nix b/pkgs/development/libraries/qt-5/5.8/qtbase/default.nix index 0af6ed8b594..ee6399c2bd4 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/default.nix +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/default.nix @@ -34,13 +34,52 @@ stdenv.mkDerivation { name = "qtbase-${version}"; inherit src version; + propagatedBuildInputs = + [ + libxml2 libxslt openssl pcre16 sqlite zlib + + # Text rendering + harfbuzz icu + + # Image formats + libjpeg libpng libtiff + ] + + ++ lib.optional mesaSupported mesa + + ++ lib.optionals (!stdenv.isDarwin) [ + dbus glib udev + + # Text rendering + fontconfig freetype + + # X11 libs + libX11 libXcomposite libXext libXi libXrender libxcb libxkbcommon xcbutil + xcbutilimage xcbutilkeysyms xcbutilrenderutil xcbutilwm + ] + + ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ + AGL AppKit ApplicationServices Carbon Cocoa + CoreAudio CoreBluetooth CoreLocation CoreServices + DiskArbitration Foundation OpenGL + darwin.cf-private darwin.libobjc libiconv + ]); + + buildInputs = [ ] + ++ lib.optionals (!stdenv.isDarwin) [ gtk3 libinput ] + ++ lib.optional developerBuild gdb + ++ lib.optional (cups != null) cups + ++ lib.optional (mysql != null) mysql.lib + ++ lib.optional (postgresql != null) postgresql; + + nativeBuildInputs = + [ bison flex gperf lndir perl pkgconfig python2 ] + ++ lib.optional (!stdenv.isDarwin) patchelf; + outputs = [ "out" "dev" ]; patches = - copyPathsToStore (lib.readPathsFromFile ./. ./series) - ++ [(if stdenv.isDarwin then ./cmake-paths-darwin.patch else ./cmake-paths.patch)] - ++ lib.optional decryptSslTraffic ./decrypt-ssl-traffic.patch - ++ lib.optionals mesaSupported [ ./dlopen-gl.patch ./mkspecs-libgl.patch ]; + copyPathsToStore (lib.readPathsFromFile ./. ./series); postPatch = '' @@ -48,37 +87,19 @@ stdenv.mkDerivation { substituteInPlace src/corelib/global/global.pri --replace /bin/ls ${coreutils}/bin/ls sed -e 's@/\(usr\|opt\)/@/var/empty/@g' -i config.tests/*/*.test -i mkspecs/*/*.conf - sed -i 's/PATHS.*NO_DEFAULT_PATH//' "src/corelib/Qt5Config.cmake.in" - sed -i 's/PATHS.*NO_DEFAULT_PATH//' "src/corelib/Qt5CoreMacros.cmake" - sed -i 's/NO_DEFAULT_PATH//' "src/gui/Qt5GuiConfigExtras.cmake.in" - sed -i 's/PATHS.*NO_DEFAULT_PATH//' "mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in" - - substituteInPlace src/network/kernel/qdnslookup_unix.cpp \ - --replace "@glibc@" "${stdenv.cc.libc.out}" - substituteInPlace src/network/kernel/qhostinfo_unix.cpp \ - --replace "@glibc@" "${stdenv.cc.libc.out}" - - substituteInPlace src/network/ssl/qsslsocket_openssl_symbols.cpp \ - --replace "@openssl@" "${openssl.out}" - '' + lib.optionalString stdenv.isLinux '' - substituteInPlace src/plugins/platforms/xcb/qxcbcursor.cpp \ - --replace "@libXcursor@" "${libXcursor.out}" - - substituteInPlace src/dbus/qdbus_symbols.cpp \ - --replace "@dbus_libs@" "${dbus.lib}" - - substituteInPlace \ - src/plugins/platforminputcontexts/compose/generator/qtablegenerator.cpp \ - --replace "@libX11@" "${libX11.out}" + sed -i '/PATHS.*NO_DEFAULT_PATH/ d' src/corelib/Qt5Config.cmake.in + sed -i '/PATHS.*NO_DEFAULT_PATH/ d' src/corelib/Qt5CoreMacros.cmake + sed -i 's/NO_DEFAULT_PATH//' src/gui/Qt5GuiConfigExtras.cmake.in + sed -i '/PATHS.*NO_DEFAULT_PATH/ d' mkspecs/features/data/cmake/Qt5BasicConfig.cmake.in '' + + lib.optionalString mesaSupported '' - substituteInPlace \ - src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp \ - --replace "@mesa_lib@" "${mesa.out}" - substituteInPlace mkspecs/common/linux.conf \ - --replace "@mesa_lib@" "${mesa.out}" \ - --replace "@mesa_inc@" "${mesa.dev or mesa}" - ''+ lib.optionalString stdenv.isDarwin '' + sed -i mkspecs/common/linux.conf \ + -e "/^QMAKE_INCDIR_OPENGL/ s|$|${mesa.dev or mesa}/include|" \ + -e "/^QMAKE_LIBDIR_OPENGL/ s|$|${mesa.out}/lib|" + '' + + + lib.optionalString stdenv.isDarwin '' sed -i \ -e 's|! /usr/bin/xcode-select --print-path >/dev/null 2>&1;|false;|' \ -e 's|! /usr/bin/xcrun -find xcodebuild >/dev/null 2>&1;|false;|' \ @@ -106,132 +127,132 @@ stdenv.mkDerivation { -importdir $out/lib/qt5/imports \ -qmldir $out/lib/qt5/qml \ -docdir $out/share/doc/qt5" - ''; - prefixKey = "-prefix "; - - # -no-eglfs, -no-directfb, -no-linuxfb and -no-kms because of the current minimalist mesa - # TODO Remove obsolete and useless flags once the build will be totally mastered - configureFlags = '' - -verbose - -confirm-license - -opensource - - -release - -shared - ${lib.optionalString developerBuild "-developer-build"} - -accessibility - -optimized-qmake - -strip - -no-reduce-relocations - -system-proxies - -pkg-config - - -gui - -widgets - -opengl desktop - -qml-debug - -icu - -pch - - ${lib.optionalString (!system-x86_64) "-no-sse2"} - -no-sse3 - -no-ssse3 - -no-sse4.1 - -no-sse4.2 - -no-avx - -no-avx2 - -no-mips_dsp - -no-mips_dspr2 - - -system-zlib - -system-libjpeg - -system-harfbuzz - -system-pcre - -openssl-linked - - -system-sqlite - -${if mysql != null then "plugin" else "no"}-sql-mysql - -${if postgresql != null then "plugin" else "no"}-sql-psql - - -make libs - -make tools - -${lib.optionalString (buildExamples == false) "no"}make examples - -${lib.optionalString (buildTests == false) "no"}make tests - -v - '' + lib.optionalString (!stdenv.isDarwin) '' - -rpath - -glib - -xcb - -qpa xcb - - -${lib.optionalString (cups == null) "no-"}cups - - -no-eglfs - -no-directfb - -no-linuxfb - -no-kms - - -libinput - -gtk - -system-libpng - -system-xcb - -system-xkbcommon - -dbus-linked - '' + lib.optionalString stdenv.isDarwin '' - -platform macx-clang - -no-use-gold-linker - -no-fontconfig - -qt-freetype - -qt-libpng + NIX_CFLAGS_COMPILE+=" -DNIXPKGS_QPA_PLATFORM_PLUGIN_PATH=\"''${!outputLib}/lib/qt5/plugins/platforms\"" ''; - # PostgreSQL autodetection fails sporadically because Qt omits the "-lpq" flag - # if dependency paths contain the string "pq", which can occur in the hash. - # To prevent these failures, we need to override PostgreSQL detection. - PSQL_LIBS = lib.optionalString (postgresql != null) "-L${postgresql.lib}/lib -lpq"; - propagatedBuildInputs = [ - libxml2 libxslt openssl pcre16 sqlite zlib + NIX_CFLAGS_COMPILE = + [ + "-Wno-error=sign-compare" # freetype-2.5.4 changed signedness of some struct fields + ''-DNIXPKGS_QTCOMPOSE="${libX11.out}/share/X11/locale"'' + ''-DNIXPKGS_LIBRESOLV="${stdenv.cc.libc.out}/lib/libresolv"'' + ''-DNIXPKGS_LIBXCURSOR="${libXcursor.out}/lib/libXcursor"'' + ] - # Text rendering - harfbuzz icu + ++ lib.optional mesaSupported + ''-DNIXPKGS_MESA_GL="${mesa.out}/lib/libGL"'' - # Image formats - libjpeg libpng libtiff - ] - ++ lib.optional mesaSupported mesa - ++ lib.optionals (!stdenv.isDarwin) [ - dbus glib udev + ++ lib.optionals stdenv.isDarwin + [ + "-D__MAC_OS_X_VERSION_MAX_ALLOWED=1090" + "-D__AVAILABILITY_INTERNAL__MAC_10_10=__attribute__((availability(macosx,introduced=10.10)))" + # Note that nixpkgs's objc4 is from macOS 10.11 while the SDK is + # 10.9 which necessitates the above macro definition that mentions + # 10.10 + ] - # Text rendering - fontconfig freetype + ++ lib.optional decryptSslTraffic "-DQT_DECRYPT_SSL_TRAFFIC"; - # X11 libs - libX11 libXcomposite libXext libXi libXrender libxcb libxkbcommon xcbutil - xcbutilimage xcbutilkeysyms xcbutilrenderutil xcbutilwm - ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ - AGL AppKit ApplicationServices Carbon Cocoa - CoreAudio CoreBluetooth CoreLocation CoreServices - DiskArbitration Foundation OpenGL - darwin.cf-private darwin.apple_sdk.sdk darwin.libobjc libiconv - ]); + prefixKey = "-prefix "; - buildInputs = [ ] - ++ lib.optionals (!stdenv.isDarwin) [ gtk3 libinput ] - ++ lib.optional developerBuild gdb - ++ lib.optional (cups != null) cups - ++ lib.optional (mysql != null) mysql.lib - ++ lib.optional (postgresql != null) postgresql; + # PostgreSQL autodetection fails sporadically because Qt omits the "-lpq" flag + # if dependency paths contain the string "pq", which can occur in the hash. + # To prevent these failures, we need to override PostgreSQL detection. + PSQL_LIBS = lib.optionalString (postgresql != null) "-L${postgresql.lib}/lib -lpq"; - nativeBuildInputs = [ bison flex gperf lndir perl pkgconfig python2 ] ++ lib.optional (!stdenv.isDarwin) patchelf; + # -no-eglfs, -no-directfb, -no-linuxfb and -no-kms because of the current minimalist mesa + # TODO Remove obsolete and useless flags once the build will be totally mastered + configureFlags = + [ + "-verbose" + "-confirm-license" + "-opensource" + + "-release" + "-shared" + "-accessibility" + "-optimized-qmake" + "-strip" + "-system-proxies" + "-pkg-config" + ] + ++ lib.optionals developerBuild [ + "-developer-build" + "-no-warnings-are-errors" + ] + ++ [ + "-gui" + "-widgets" + "-opengl desktop" + "-qml-debug" + "-icu" + "-pch" + ] + + ++ [ + ''${lib.optionalString (!system-x86_64) "-no"}-sse2'' + "-no-sse3" + "-no-ssse3" + "-no-sse4.1" + "-no-sse4.2" + "-no-avx" + "-no-avx2" + "-no-mips_dsp" + "-no-mips_dspr2" + ] + + ++ [ + "-system-zlib" + "-system-libjpeg" + "-system-harfbuzz" + "-system-pcre" + "-openssl-linked" + "-system-sqlite" + ''-${if mysql != null then "plugin" else "no"}-sql-mysql'' + ''-${if postgresql != null then "plugin" else "no"}-sql-psql'' + + "-make libs" + "-make tools" + ''-${lib.optionalString (buildExamples == false) "no"}make examples'' + ''-${lib.optionalString (buildTests == false) "no"}make tests'' + "-v" + ] + + ++ lib.optionals (!stdenv.isDarwin) [ + "-rpath" + + "-system-xcb" + "-xcb" + "-qpa xcb" + + "-system-xkbcommon" + "-libinput" + "-xkbcommon-evdev" + + "-no-eglfs" + "-no-gbm" + "-no-kms" + "-no-linuxfb" + + ''-${lib.optionalString (cups == null) "no-"}cups'' + "-dbus-linked" + "-glib" + "-gtk" + "-inotify" + "-system-libjpeg" + "-system-libpng" + ] + + ++ lib.optionals stdenv.isDarwin [ + "-platform macx-clang" + "-no-use-gold-linker" + "-no-fontconfig" + "-qt-freetype" + "-qt-libpng" + ]; - # freetype-2.5.4 changed signedness of some struct fields - NIX_CFLAGS_COMPILE = "-Wno-error=sign-compare" - + lib.optionalString stdenv.isDarwin " -D__MAC_OS_X_VERSION_MAX_ALLOWED=1090 -D__AVAILABILITY_INTERNAL__MAC_10_10=__attribute__((availability(macosx,introduced=10.10)))"; - # Note that nixpkgs's objc4 is from macOS 10.11 while the SDK is - # 10.9 which necessitates the above macro definition that mentions - # 10.10 + enableParallelBuilding = true; postInstall = '' find "$out" -name "*.cmake" | while read file; do @@ -257,28 +278,43 @@ stdenv.mkDerivation { '' # Don't retain build-time dependencies like gdb. sed '/QMAKE_DEFAULT_.*DIRS/ d' -i $dev/mkspecs/qconfig.pri + '' - # Move libtool archives and qmake projects + # Move libtool archives into $dev + + '' if [ "z''${!outputLib}" != "z''${!outputDev}" ]; then pushd "''${!outputLib}" - find lib -name '*.a' -o -name '*.la'${if stdenv.isDarwin then "" else "-o -name '*.prl'"} | \ - while read -r file; do - mkdir -p "''${!outputDev}/$(dirname "$file")" - mv "''${!outputLib}/$file" "''${!outputDev}/$file" - done + find lib -name '*.a' -o -name '*.la' | while read -r file; do + mkdir -p "''${!outputDev}/$(dirname "$file")" + mv "''${!outputLib}/$file" "''${!outputDev}/$file" + done popd fi '' + + # Move qmake project files into $dev. + # Don't move .prl files on darwin because they end up in + # "dev/lib/Foo.framework/Foo.prl" which interferes with subsequent + # use of lndir in the qtbase setup-hook. On Linux, the .prl files + # are in lib, and so do not cause a subsequent recreation of deep + # framework directory trees. + + lib.optionalString (!stdenv.isDarwin) '' + if [ "z''${!outputLib}" != "z''${!outputDev}" ]; then + pushd "''${!outputLib}" + find lib -name '*.prl' | while read -r file; do + mkdir -p "''${!outputDev}/$(dirname "$file")" + mv "''${!outputLib}/$file" "''${!outputDev}/$file" + done + popd + fi + '' + # fixup .pc file (where to find 'moc' etc.) + lib.optionalString (!stdenv.isDarwin) '' sed -i "$dev/lib/pkgconfig/Qt5Core.pc" \ -e "/^host_bins=/ c host_bins=$dev/bin" '' - # Don' move .prl files on darwin because they end up in - # "dev/lib/Foo.framework/Foo.prl" which interferes with subsequent - # use of lndir in the qtbase setup-hook. On Linux, the .prl files - # are in lib, and so do not cause a subsequent recreation of deep - # framework directory trees. + + lib.optionalString stdenv.isDarwin '' fixDarwinDylibNames_rpath() { local flags=() @@ -300,8 +336,6 @@ stdenv.mkDerivation { then ../../qtbase-setup-hook-darwin.sh else ../../qtbase-setup-hook.sh; - enableParallelBuilding = true; - meta = with lib; { homepage = http://www.qt.io; description = "A cross-platform application framework for C++"; diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-dbus.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-dbus.patch deleted file mode 100644 index 10b0b6701dd..00000000000 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-dbus.patch +++ /dev/null @@ -1,13 +0,0 @@ -Index: qtbase-opensource-src-5.7.0/src/dbus/qdbus_symbols.cpp -=================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/dbus/qdbus_symbols.cpp -+++ qtbase-opensource-src-5.7.0/src/dbus/qdbus_symbols.cpp -@@ -97,7 +97,7 @@ bool qdbus_loadLibDBus() - #ifdef Q_OS_WIN - QLatin1String("dbus-1"), - #endif -- QLatin1String("libdbus-1") -+ QLatin1String("@dbus_libs@/lib/libdbus-1") - }; - - lib->unload(); diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-gl.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-gl.patch index ea3073ced50..c835f2bfe44 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-gl.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-gl.patch @@ -1,17 +1,19 @@ -Index: qtbase-opensource-src-5.5.1/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp +Index: qtbase-opensource-src-5.8.0/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp =================================================================== ---- qtbase-opensource-src-5.5.1.orig/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp -+++ qtbase-opensource-src-5.5.1/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp -@@ -563,7 +563,12 @@ void (*QGLXContext::getProcAddress(const - { +--- qtbase-opensource-src-5.8.0.orig/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp ++++ qtbase-opensource-src-5.8.0/src/plugins/platforms/xcb/gl_integrations/xcb_glx/qglxintegration.cpp +@@ -576,7 +576,14 @@ QFunctionPointer QGLXContext::getProcAdd + #ifndef QT_NO_LIBRARY extern const QString qt_gl_library_name(); // QLibrary lib(qt_gl_library_name()); + // Check system library paths first QLibrary lib(QLatin1String("GL")); ++#ifdef NIXPKGS_MESA_GL + if (!lib.load()) { + // Fallback to Mesa driver -+ lib.setFileName(QLatin1String("@mesa_lib@/lib/libGL")); ++ lib.setFileName(QLatin1String(NIXPKGS_MESA_GL)); + } ++#endif // NIXPKGS_MESA_GL glXGetProcAddressARB = (qt_glXGetProcAddressARB) lib.resolve("glXGetProcAddressARB"); + #endif } - } diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-libXcursor.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-libXcursor.patch index 02b7efb73d2..d0e82cf122a 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-libXcursor.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-libXcursor.patch @@ -1,17 +1,20 @@ -Index: qtbase-opensource-src-5.7.0/src/plugins/platforms/xcb/qxcbcursor.cpp +Index: qtbase-opensource-src-5.8.0/src/plugins/platforms/xcb/qxcbcursor.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/plugins/platforms/xcb/qxcbcursor.cpp -+++ qtbase-opensource-src-5.7.0/src/plugins/platforms/xcb/qxcbcursor.cpp -@@ -309,10 +309,10 @@ QXcbCursor::QXcbCursor(QXcbConnection *c +--- qtbase-opensource-src-5.8.0.orig/src/plugins/platforms/xcb/qxcbcursor.cpp ++++ qtbase-opensource-src-5.8.0/src/plugins/platforms/xcb/qxcbcursor.cpp +@@ -309,13 +309,13 @@ QXcbCursor::QXcbCursor(QXcbConnection *c #if defined(XCB_USE_XLIB) && !defined(QT_NO_LIBRARY) static bool function_ptrs_not_initialized = true; if (function_ptrs_not_initialized) { - QLibrary xcursorLib(QLatin1String("Xcursor"), 1); -+ QLibrary xcursorLib(QLatin1String("@libXcursor@/lib/libXcursor"), 1); ++ QLibrary xcursorLib(QLatin1String(NIXPKGS_LIBXCURSOR), 1); bool xcursorFound = xcursorLib.load(); if (!xcursorFound) { // try without the version number - xcursorLib.setFileName(QLatin1String("Xcursor")); -+ xcursorLib.setFileName(QLatin1String("@libXcursor@/lib/Xcursor")); ++ xcursorLib.setFileName(QLatin1String(NIXPKGS_LIBXCURSOR)); xcursorFound = xcursorLib.load(); } if (xcursorFound) { + ptrXcursorLibraryLoadCursor = + (PtrXcursorLibraryLoadCursor) xcursorLib.resolve("XcursorLibraryLoadCursor"); + ptrXcursorLibraryGetTheme = diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-openssl.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-openssl.patch deleted file mode 100644 index 9891bfeac5b..00000000000 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-openssl.patch +++ /dev/null @@ -1,26 +0,0 @@ -Index: qtbase-opensource-src-5.7.0/src/network/ssl/qsslsocket_openssl_symbols.cpp -=================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/network/ssl/qsslsocket_openssl_symbols.cpp -+++ qtbase-opensource-src-5.7.0/src/network/ssl/qsslsocket_openssl_symbols.cpp -@@ -658,8 +658,8 @@ static QPair<QLibrary*, QLibrary*> loadO - #endif - #if defined(SHLIB_VERSION_NUMBER) && !defined(Q_OS_QNX) // on QNX, the libs are always libssl.so and libcrypto.so - // first attempt: the canonical name is libssl.so.<SHLIB_VERSION_NUMBER> -- libssl->setFileNameAndVersion(QLatin1String("ssl"), QLatin1String(SHLIB_VERSION_NUMBER)); -- libcrypto->setFileNameAndVersion(QLatin1String("crypto"), QLatin1String(SHLIB_VERSION_NUMBER)); -+ libssl->setFileNameAndVersion(QLatin1String("@openssl@/lib/libssl"), QLatin1String(SHLIB_VERSION_NUMBER)); -+ libcrypto->setFileNameAndVersion(QLatin1String("@openssl@/lib/libcrypto"), QLatin1String(SHLIB_VERSION_NUMBER)); - if (libcrypto->load() && libssl->load()) { - // libssl.so.<SHLIB_VERSION_NUMBER> and libcrypto.so.<SHLIB_VERSION_NUMBER> found - return pair; -@@ -676,8 +676,8 @@ static QPair<QLibrary*, QLibrary*> loadO - // OS X's /usr/lib/libssl.dylib, /usr/lib/libcrypto.dylib will be picked up in the third - // attempt, _after_ <bundle>/Contents/Frameworks has been searched. - // iOS does not ship a system libssl.dylib, libcrypto.dylib in the first place. -- libssl->setFileNameAndVersion(QLatin1String("ssl"), -1); -- libcrypto->setFileNameAndVersion(QLatin1String("crypto"), -1); -+ libssl->setFileNameAndVersion(QLatin1String("@openssl@/lib/libssl"), -1); -+ libcrypto->setFileNameAndVersion(QLatin1String("@openssl@/lib/libcrypto"), -1); - if (libcrypto->load() && libssl->load()) { - // libssl.so.0 and libcrypto.so.0 found - return pair; diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-resolv.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-resolv.patch index 98a3610f5fb..ef7cd4a910a 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-resolv.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/dlopen-resolv.patch @@ -1,26 +1,26 @@ -Index: qtbase-opensource-src-5.7.0/src/network/kernel/qdnslookup_unix.cpp +Index: qtbase-opensource-src-5.8.0/src/network/kernel/qdnslookup_unix.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/network/kernel/qdnslookup_unix.cpp -+++ qtbase-opensource-src-5.7.0/src/network/kernel/qdnslookup_unix.cpp -@@ -85,7 +85,7 @@ static bool resolveLibraryInternal() +--- qtbase-opensource-src-5.8.0.orig/src/network/kernel/qdnslookup_unix.cpp ++++ qtbase-opensource-src-5.8.0/src/network/kernel/qdnslookup_unix.cpp +@@ -90,7 +90,7 @@ static bool resolveLibraryInternal() if (!lib.load()) #endif { - lib.setFileName(QLatin1String("resolv")); -+ lib.setFileName(QLatin1String("@glibc@/lib/resolv")); ++ lib.setFileName(QLatin1String(NIXPKGS_LIBRESOLV)); if (!lib.load()) return false; } -Index: qtbase-opensource-src-5.7.0/src/network/kernel/qhostinfo_unix.cpp +Index: qtbase-opensource-src-5.8.0/src/network/kernel/qhostinfo_unix.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/network/kernel/qhostinfo_unix.cpp -+++ qtbase-opensource-src-5.7.0/src/network/kernel/qhostinfo_unix.cpp +--- qtbase-opensource-src-5.8.0.orig/src/network/kernel/qhostinfo_unix.cpp ++++ qtbase-opensource-src-5.8.0/src/network/kernel/qhostinfo_unix.cpp @@ -100,7 +100,7 @@ static bool resolveLibraryInternal() if (!lib.load()) #endif { - lib.setFileName(QLatin1String("resolv")); -+ lib.setFileName(QLatin1String("@glibc@/lib/libresolv")); ++ lib.setFileName(QLatin1String(NIXPKGS_LIBRESOLV)); if (!lib.load()) return false; } diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/libressl.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/libressl.patch index 4390db977a7..e9c60e7ab07 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/libressl.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/libressl.patch @@ -9,11 +9,11 @@ is defined in openssl, but not in libressl. src/network/ssl/qsslcontext_openssl.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) -Index: qtbase-opensource-src-5.7.0/src/network/ssl/qsslcontext_openssl.cpp +Index: qtbase-opensource-src-5.8.0/src/network/ssl/qsslcontext_openssl.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/network/ssl/qsslcontext_openssl.cpp -+++ qtbase-opensource-src-5.7.0/src/network/ssl/qsslcontext_openssl.cpp -@@ -347,7 +347,7 @@ init_context: +--- qtbase-opensource-src-5.8.0.orig/src/network/ssl/qsslcontext_openssl.cpp ++++ qtbase-opensource-src-5.8.0/src/network/ssl/qsslcontext_openssl.cpp +@@ -351,7 +351,7 @@ init_context: const QVector<QSslEllipticCurve> qcurves = sslContext->sslConfiguration.ellipticCurves(); if (!qcurves.isEmpty()) { @@ -22,7 +22,7 @@ Index: qtbase-opensource-src-5.7.0/src/network/ssl/qsslcontext_openssl.cpp // Set the curves to be used if (q_SSLeay() >= 0x10002000L) { // SSL_CTX_ctrl wants a non-const pointer as last argument, -@@ -360,7 +360,7 @@ init_context: +@@ -364,7 +364,7 @@ init_context: sslContext->errorCode = QSslError::UnspecifiedError; } } else diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/mkspecs-libgl.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/mkspecs-libgl.patch deleted file mode 100644 index fda3d3e3653..00000000000 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/mkspecs-libgl.patch +++ /dev/null @@ -1,15 +0,0 @@ -Index: qtbase-opensource-src-5.5.1/mkspecs/common/linux.conf -=================================================================== ---- qtbase-opensource-src-5.5.1.orig/mkspecs/common/linux.conf -+++ qtbase-opensource-src-5.5.1/mkspecs/common/linux.conf -@@ -12,8 +12,8 @@ QMAKE_INCDIR = - QMAKE_LIBDIR = - QMAKE_INCDIR_X11 = - QMAKE_LIBDIR_X11 = --QMAKE_INCDIR_OPENGL = --QMAKE_LIBDIR_OPENGL = -+QMAKE_INCDIR_OPENGL = @mesa_inc@/include -+QMAKE_LIBDIR_OPENGL = @mesa_lib@/lib - QMAKE_INCDIR_OPENGL_ES2 = $$QMAKE_INCDIR_OPENGL - QMAKE_LIBDIR_OPENGL_ES2 = $$QMAKE_LIBDIR_OPENGL - QMAKE_INCDIR_EGL = diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/nix-profiles-library-paths.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/nix-profiles-library-paths.patch index ebaf3651a6d..553c71d0ace 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/nix-profiles-library-paths.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/nix-profiles-library-paths.patch @@ -1,8 +1,8 @@ -Index: qtbase-opensource-src-5.7.0/src/corelib/kernel/qcoreapplication.cpp +Index: qtbase-opensource-src-5.8.0/src/corelib/kernel/qcoreapplication.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/kernel/qcoreapplication.cpp -+++ qtbase-opensource-src-5.7.0/src/corelib/kernel/qcoreapplication.cpp -@@ -2487,7 +2487,17 @@ QStringList QCoreApplication::libraryPat +--- qtbase-opensource-src-5.8.0.orig/src/corelib/kernel/qcoreapplication.cpp ++++ qtbase-opensource-src-5.8.0/src/corelib/kernel/qcoreapplication.cpp +@@ -2476,6 +2476,15 @@ QStringList QCoreApplication::libraryPat QStringList *app_libpaths = new QStringList; coreappdata()->app_libpaths.reset(app_libpaths); @@ -16,7 +16,5 @@ Index: qtbase-opensource-src-5.7.0/src/corelib/kernel/qcoreapplication.cpp + } + const QByteArray libPathEnv = qgetenv("QT_PLUGIN_PATH"); -+ qunsetenv("QT_PLUGIN_PATH"); // do not propagate to child processes if (!libPathEnv.isEmpty()) { QStringList paths = QFile::decodeName(libPathEnv).split(QDir::listSeparator(), QString::SkipEmptyParts); - for (QStringList::const_iterator it = paths.constBegin(); it != paths.constEnd(); ++it) { diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/qnativesocketengine-type-pun.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/qnativesocketengine-type-pun.patch new file mode 100644 index 00000000000..ad40dfab2f7 --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/qnativesocketengine-type-pun.patch @@ -0,0 +1,14 @@ +Index: qtbase-opensource-src-5.8.0/src/network/socket/qnativesocketengine_unix.cpp +=================================================================== +--- qtbase-opensource-src-5.8.0.orig/src/network/socket/qnativesocketengine_unix.cpp ++++ qtbase-opensource-src-5.8.0/src/network/socket/qnativesocketengine_unix.cpp +@@ -979,7 +979,8 @@ qint64 QNativeSocketEnginePrivate::nativ + if (cmsgptr->cmsg_len == CMSG_LEN(sizeof(int)) + && ((cmsgptr->cmsg_level == IPPROTO_IPV6 && cmsgptr->cmsg_type == IPV6_HOPLIMIT) + || (cmsgptr->cmsg_level == IPPROTO_IP && cmsgptr->cmsg_type == IP_TTL))) { +- header->hopLimit = *reinterpret_cast<int *>(CMSG_DATA(cmsgptr)); ++ int *ttl = reinterpret_cast<int *>(CMSG_DATA(cmsgptr)); ++ header->hopLimit = *ttl; + } + + #ifndef QT_NO_SCTP diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/qpa-platform-plugin-path.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/qpa-platform-plugin-path.patch new file mode 100644 index 00000000000..270116e1978 --- /dev/null +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/qpa-platform-plugin-path.patch @@ -0,0 +1,43 @@ +Index: qtbase-opensource-src-5.8.0/src/gui/kernel/qplatformintegrationfactory.cpp +=================================================================== +--- qtbase-opensource-src-5.8.0.orig/src/gui/kernel/qplatformintegrationfactory.cpp ++++ qtbase-opensource-src-5.8.0/src/gui/kernel/qplatformintegrationfactory.cpp +@@ -62,9 +62,10 @@ QPlatformIntegration *QPlatformIntegrati + // Try loading the plugin from platformPluginPath first: + if (!platformPluginPath.isEmpty()) { + QCoreApplication::addLibraryPath(platformPluginPath); +- if (QPlatformIntegration *ret = qLoadPlugin<QPlatformIntegration, QPlatformIntegrationPlugin>(directLoader(), platform, paramList, argc, argv)) +- return ret; + } ++ QCoreApplication::addLibraryPath(QStringLiteral(NIXPKGS_QPA_PLATFORM_PLUGIN_PATH)); ++ if (QPlatformIntegration *ret = qLoadPlugin<QPlatformIntegration, QPlatformIntegrationPlugin>(directLoader(), platform, paramList, argc, argv)) ++ return ret; + #else + Q_UNUSED(platformPluginPath); + #endif +@@ -84,15 +85,16 @@ QStringList QPlatformIntegrationFactory: + #ifndef QT_NO_LIBRARY + if (!platformPluginPath.isEmpty()) { + QCoreApplication::addLibraryPath(platformPluginPath); +- list = directLoader()->keyMap().values(); +- if (!list.isEmpty()) { +- const QString postFix = QLatin1String(" (from ") +- + QDir::toNativeSeparators(platformPluginPath) +- + QLatin1Char(')'); +- const QStringList::iterator end = list.end(); +- for (QStringList::iterator it = list.begin(); it != end; ++it) +- (*it).append(postFix); +- } ++ } ++ QCoreApplication::addLibraryPath(QStringLiteral(NIXPKGS_QPA_PLATFORM_PLUGIN_PATH)); ++ list = directLoader()->keyMap().values(); ++ if (!list.isEmpty()) { ++ const QString postFix = QLatin1String(" (from ") ++ + QDir::toNativeSeparators(platformPluginPath) ++ + QLatin1Char(')'); ++ const QStringList::iterator end = list.end(); ++ for (QStringList::iterator it = list.begin(); it != end; ++it) ++ (*it).append(postFix); + } + #else + Q_UNUSED(platformPluginPath); diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/series b/pkgs/development/libraries/qt-5/5.8/qtbase/series index 2196d838375..47400cf7aa3 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/series +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/series @@ -1,9 +1,10 @@ dlopen-resolv.patch tzdir.patch dlopen-libXcursor.patch -dlopen-openssl.patch -dlopen-dbus.patch xdg-config-dirs.patch nix-profiles-library-paths.patch -compose-search-path.patch libressl.patch +qpa-platform-plugin-path.patch +dlopen-gl.patch +compose-search-path.patch +cmake-paths.patch diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/tzdir.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/tzdir.patch index f4056dd9cc9..b8c05815a78 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/tzdir.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/tzdir.patch @@ -1,29 +1,28 @@ -Index: qtbase-opensource-src-5.7.0/src/corelib/tools/qtimezoneprivate_tz.cpp +Index: qtbase-opensource-src-5.8.0/src/corelib/tools/qtimezoneprivate_tz.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/tools/qtimezoneprivate_tz.cpp -+++ qtbase-opensource-src-5.7.0/src/corelib/tools/qtimezoneprivate_tz.cpp -@@ -68,7 +68,10 @@ typedef QHash<QByteArray, QTzTimeZone> Q +--- qtbase-opensource-src-5.8.0.orig/src/corelib/tools/qtimezoneprivate_tz.cpp ++++ qtbase-opensource-src-5.8.0/src/corelib/tools/qtimezoneprivate_tz.cpp +@@ -70,7 +70,11 @@ typedef QHash<QByteArray, QTzTimeZone> Q // Parse zone.tab table, assume lists all installed zones, if not will need to read directories static QTzTimeZoneHash loadTzTimeZones() { - QString path = QStringLiteral("/usr/share/zoneinfo/zone.tab"); -+ QString path = qgetenv("TZDIR"); -+ path += "/zone.tab"; ++ // Try TZDIR first, in case we're running on NixOS. ++ QString path = QFile::decodeName(qgetenv("TZDIR")) + QStringLiteral("/zone.tab"); ++ // Fallback to traditional paths in case we are not on NixOS. + if (!QFile::exists(path)) + path = QStringLiteral("/usr/share/zoneinfo/zone.tab"); if (!QFile::exists(path)) path = QStringLiteral("/usr/lib/zoneinfo/zone.tab"); -@@ -566,12 +569,18 @@ void QTzTimeZonePrivate::init(const QByt +@@ -642,12 +646,16 @@ void QTzTimeZonePrivate::init(const QByt if (!tzif.open(QIODevice::ReadOnly)) return; } else { - // Open named tz, try modern path first, if fails try legacy path - tzif.setFileName(QLatin1String("/usr/share/zoneinfo/") + QString::fromLocal8Bit(ianaId)); -+ // Try TZDIR first -+ QString zoneinfoDir = qgetenv("TZDIR"); -+ zoneinfoDir += "/" + QString::fromLocal8Bit(ianaId); -+ tzif.setFileName(zoneinfoDir); ++ // Try TZDIR first, in case we're running on NixOS ++ tzif.setFileName(QFile::decodeName(qgetenv("TZDIR")) + QStringLiteral("/") + QString::fromLocal8Bit(ianaId)); if (!tzif.open(QIODevice::ReadOnly)) { - tzif.setFileName(QLatin1String("/usr/lib/zoneinfo/") + QString::fromLocal8Bit(ianaId)); - if (!tzif.open(QIODevice::ReadOnly)) diff --git a/pkgs/development/libraries/qt-5/5.8/qtbase/xdg-config-dirs.patch b/pkgs/development/libraries/qt-5/5.8/qtbase/xdg-config-dirs.patch index 1f2f316c5b2..b5c21f064a4 100644 --- a/pkgs/development/libraries/qt-5/5.8/qtbase/xdg-config-dirs.patch +++ b/pkgs/development/libraries/qt-5/5.8/qtbase/xdg-config-dirs.patch @@ -1,8 +1,8 @@ -Index: qtbase-opensource-src-5.7.0/src/corelib/io/qsettings.cpp +Index: qtbase-opensource-src-5.8.0/src/corelib/io/qsettings.cpp =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/io/qsettings.cpp -+++ qtbase-opensource-src-5.7.0/src/corelib/io/qsettings.cpp -@@ -1161,6 +1161,23 @@ QConfFileSettingsPrivate::QConfFileSetti +--- qtbase-opensource-src-5.8.0.orig/src/corelib/io/qsettings.cpp ++++ qtbase-opensource-src-5.8.0/src/corelib/io/qsettings.cpp +@@ -1134,6 +1134,23 @@ QConfFileSettingsPrivate::QConfFileSetti confFiles[F_System | F_Application].reset(QConfFile::fromName(systemPath + appFile, false)); confFiles[F_System | F_Organization].reset(QConfFile::fromName(systemPath + orgFile, false)); @@ -26,10 +26,10 @@ Index: qtbase-opensource-src-5.7.0/src/corelib/io/qsettings.cpp for (i = 0; i < NumConfFiles; ++i) { if (confFiles[i]) { spec = i; -Index: qtbase-opensource-src-5.7.0/src/corelib/io/qsettings_p.h +Index: qtbase-opensource-src-5.8.0/src/corelib/io/qsettings_p.h =================================================================== ---- qtbase-opensource-src-5.7.0.orig/src/corelib/io/qsettings_p.h -+++ qtbase-opensource-src-5.7.0/src/corelib/io/qsettings_p.h +--- qtbase-opensource-src-5.8.0.orig/src/corelib/io/qsettings_p.h ++++ qtbase-opensource-src-5.8.0/src/corelib/io/qsettings_p.h @@ -246,7 +246,7 @@ public: F_Organization = 0x1, F_User = 0x0, diff --git a/pkgs/development/libraries/qt-5/make-qt-wrapper.sh b/pkgs/development/libraries/qt-5/make-qt-wrapper.sh index 8f42682fa23..4a5651f74c9 100644 --- a/pkgs/development/libraries/qt-5/make-qt-wrapper.sh +++ b/pkgs/development/libraries/qt-5/make-qt-wrapper.sh @@ -2,9 +2,9 @@ wrapQtProgram() { local prog="$1" shift wrapProgram "$prog" \ - --set QT_PLUGIN_PATH "$QT_PLUGIN_PATH" \ - --set QML_IMPORT_PATH "$QML_IMPORT_PATH" \ - --set QML2_IMPORT_PATH "$QML2_IMPORT_PATH" \ + --prefix QT_PLUGIN_PATH : "$QT_PLUGIN_PATH" \ + --prefix QML_IMPORT_PATH : "$QML_IMPORT_PATH" \ + --prefix QML2_IMPORT_PATH : "$QML2_IMPORT_PATH" \ --prefix XDG_DATA_DIRS : "$RUNTIME_XDG_DATA_DIRS" \ --prefix XDG_CONFIG_DIRS : "$RUNTIME_XDG_CONFIG_DIRS" \ --prefix GIO_EXTRA_MODULES : "$GIO_EXTRA_MODULES" \ @@ -17,9 +17,9 @@ makeQtWrapper() { shift shift makeWrapper "$old" "$new" \ - --set QT_PLUGIN_PATH "$QT_PLUGIN_PATH" \ - --set QML_IMPORT_PATH "$QML_IMPORT_PATH" \ - --set QML2_IMPORT_PATH "$QML2_IMPORT_PATH" \ + --prefix QT_PLUGIN_PATH : "$QT_PLUGIN_PATH" \ + --prefix QML_IMPORT_PATH : "$QML_IMPORT_PATH" \ + --prefix QML2_IMPORT_PATH : "$QML2_IMPORT_PATH" \ --prefix XDG_DATA_DIRS : "$RUNTIME_XDG_DATA_DIRS" \ --prefix XDG_CONFIG_DIRS : "$RUNTIME_XDG_CONFIG_DIRS" \ --prefix GIO_EXTRA_MODULES : "$GIO_EXTRA_MODULES" \ diff --git a/pkgs/development/libraries/qtinstaller/default.nix b/pkgs/development/libraries/qtinstaller/default.nix new file mode 100644 index 00000000000..3379cbc9acf --- /dev/null +++ b/pkgs/development/libraries/qtinstaller/default.nix @@ -0,0 +1,45 @@ +{ stdenv, fetchurl, qtdeclarative , qttools, qtbase, qmakeHook }: + +stdenv.mkDerivation rec { + name = "qtinstaller"; + + propagatedBuildInputs = [qtdeclarative qttools]; + nativeBuildInputs = [ qmakeHook ]; + + version = "2.0.3"; + src = fetchurl { + url = "http://download.qt.io/official_releases/qt-installer-framework/${version}/qt-installer-framework-opensource-${version}-src.tar.gz"; + sha256 = "003gwjg02isw8qjyka377g1ahlisfyi44l6xfa4hvvdgqqq0hy2f"; + name = "qt-installer-framework-opensource-src-${version}.tar.gz"; + }; + + outputs = [ "out" "dev" "doc" ]; + + setOutputFlags = false; + enableParallelBuilding = true; + NIX_QT_SUBMODULE = true; + + installPhase = '' + mkdir -p $out/{bin,lib,share/qt-installer-framework} + cp -a bin/{archivegen,binarycreator,devtool,installerbase,repogen} $out/bin + cp -a lib/{libinstaller.so*,lib7z.a} $out/lib + cp -a examples $out/share/qt-installer-framework/ + ''; + + postFixup = '' + moveToOutput "bin/archivegen" "$out" + moveToOutput "bin/binarycreator" "$out" + moveToOutput "bin/devtool" "$out" + moveToOutput "bin/installerbase" "$out" + moveToOutput "bin/repogen" "$out" + moveToOutput "share" "$doc" + moveToOutput "lib/libinstaller.so" "$out" + moveToOutput "lib/libinstaller.so.1" "$out" + moveToOutput "lib/libinstaller.so.1.0" "$out" + moveToOutput "lib/libinstaller.so.1.0.0" "$out" + ''; + + meta = (qtbase.meta) // { + description = ''Qt installer framework''; + }; +} diff --git a/pkgs/development/libraries/qtstyleplugins/default.nix b/pkgs/development/libraries/qtstyleplugins/default.nix index 215a038adbe..dc27e2034f1 100644 --- a/pkgs/development/libraries/qtstyleplugins/default.nix +++ b/pkgs/development/libraries/qtstyleplugins/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchFromGitHub, qmakeHook, qtbase, pkgconfig, gtk2 }: stdenv.mkDerivation rec { - name = "qtstyleplugins-2016-12-01"; + name = "qtstyleplugins-2017-03-11"; src = fetchFromGitHub { owner = "qt"; repo = "qtstyleplugins"; - rev = "7aa47640c202cc4a9c16aa7df98191236743c8ba"; - sha256 = "0pysgn5yhbh85rv7syvf2w9g1gj1z1nwspjri39dc95vj108lin5"; + rev = "335dbece103e2cbf6c7cf819ab6672c2956b17b3"; + sha256 = "085wyn85nrmzr8nv5zv7fi2kqf8rp1gnd30h72s30j55xvhmxvmy"; }; buildInputs = [ qmakeHook pkgconfig gtk2 ]; @@ -23,6 +23,5 @@ stdenv.mkDerivation rec { license = licenses.lgpl21; maintainers = [ maintainers.gnidorah ]; platforms = platforms.linux; - broken = builtins.compareVersions qtbase.version "5.7.0" > 0; }; } diff --git a/pkgs/development/libraries/qtwebkit-plugins/default.nix b/pkgs/development/libraries/qtwebkit-plugins/default.nix index fbb2ffdd83b..73e62945113 100644 --- a/pkgs/development/libraries/qtwebkit-plugins/default.nix +++ b/pkgs/development/libraries/qtwebkit-plugins/default.nix @@ -15,7 +15,7 @@ stdenv.mkDerivation { buildInputs = [ qtwebkit hunspell ]; postPatch = '' - sed -i "s,-lhunspell,-lhunspell-1.3," src/spellcheck/spellcheck.pri + sed -i "s,-lhunspell,-lhunspell-1.6," src/spellcheck/spellcheck.pri sed -i "s,\$\$\[QT_INSTALL_PLUGINS\],$out/lib/qt5/plugins," src/src.pro ''; diff --git a/pkgs/development/libraries/qwt/6_qt4.nix b/pkgs/development/libraries/qwt/6_qt4.nix index 7774ab7df9e..0315ae72709 100644 --- a/pkgs/development/libraries/qwt/6_qt4.nix +++ b/pkgs/development/libraries/qwt/6_qt4.nix @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { homepage = http://qwt.sourceforge.net/; # LGPL 2.1 plus a few exceptions (more liberal) license = stdenv.lib.licenses.qwt; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; maintainers = [ maintainers.bjornfor ]; branch = "6"; }; diff --git a/pkgs/development/libraries/rdkafka/default.nix b/pkgs/development/libraries/rdkafka/default.nix index 32fff70ebfb..cc7c7a31e1d 100644 --- a/pkgs/development/libraries/rdkafka/default.nix +++ b/pkgs/development/libraries/rdkafka/default.nix @@ -1,19 +1,22 @@ -{ stdenv, fetchFromGitHub, zlib, perl }: +{ stdenv, fetchFromGitHub, zlib, perl, pkgconfig, python }: stdenv.mkDerivation rec { - name = "rdkafka-2015-11-03"; + name = "rdkafka-${version}"; + version = "0.9.5"; src = fetchFromGitHub { owner = "edenhill"; repo = "librdkafka"; - rev = "3e1babf4f26a7d12bbd272c1cdf4aa6a44000d4a"; - sha256 = "1vmbbkgdwxr25wz60hi6rhqb843ipz34r9baygv87fwh3lwwkqwl"; + rev = "v${version}"; + sha256 = "0yp8vmj3yc564hcmhx46ssyn8qayywnsrg4wg67qk6jw967qgwsn"; }; - buildInputs = [ zlib perl ]; + buildInputs = [ zlib perl pkgconfig python ]; NIX_CFLAGS_COMPILE = "-Wno-error=strict-overflow"; + configureFlags = stdenv.lib.optionals stdenv.isDarwin [ "--disable-ssl" ]; + postPatch = '' patchShebangs . ''; @@ -22,7 +25,7 @@ stdenv.mkDerivation rec { description = "librdkafka - Apache Kafka C/C++ client library"; homepage = "https://github.com/edenhill/librdkafka"; license = licenses.bsd2; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ boothead wkennington ]; }; } diff --git a/pkgs/development/libraries/science/biology/htslib/default.nix b/pkgs/development/libraries/science/biology/htslib/default.nix index 29fb338c838..a74905b5ba1 100644 --- a/pkgs/development/libraries/science/biology/htslib/default.nix +++ b/pkgs/development/libraries/science/biology/htslib/default.nix @@ -1,16 +1,21 @@ -{ stdenv, fetchurl, zlib }: +{ stdenv, fetchurl, zlib, bzip2, lzma, curl }: stdenv.mkDerivation rec { name = "${pname}-${version}"; + version = "${major}.0"; pname = "htslib"; - version = "1.3.2"; + major = "1.4"; src = fetchurl { - url = "https://github.com/samtools/${pname}/releases/download/${version}/${name}.tar.bz2"; - sha256 = "0iq3blw23s55vkr1z88p9y2dqrb2dybzhl6hz2nlk53ncihrxcdr"; + url = "https://github.com/samtools/htslib/releases/download/${major}/htslib-${major}.tar.bz2"; + sha256 = "0l1ki3sqfhawfn7fx9v7i2pm725jki4c5zij9j96xka5zwc8iz2w"; }; - buildInputs = [ zlib ]; + buildInputs = [ zlib bzip2 lzma curl ]; + + configureFlags = "--enable-libcurl"; # optional but strongly recommended + + installFlags = "prefix=$(out)"; meta = with stdenv.lib; { description = "A C library for reading/writing high-throughput sequencing data"; diff --git a/pkgs/development/libraries/science/math/blas/default.nix b/pkgs/development/libraries/science/math/blas/default.nix index ce35743e8bc..6f729e8a0b2 100644 --- a/pkgs/development/libraries/science/math/blas/default.nix +++ b/pkgs/development/libraries/science/math/blas/default.nix @@ -46,6 +46,13 @@ stdenv.mkDerivation rec { ln -s libblas.so.${version} "$out/lib/libblas.so" ''; + preFixup = stdenv.lib.optionalString stdenv.isDarwin '' + for fn in $(find $out/lib -name "*.so*"); do + if [ -L "$fn" ]; then continue; fi + install_name_tool -id "$fn" "$fn" + done + ''; + meta = { description = "Basic Linear Algebra Subprograms"; license = stdenv.lib.licenses.publicDomain; diff --git a/pkgs/development/libraries/science/math/clblas/cuda/default.nix b/pkgs/development/libraries/science/math/clblas/cuda/default.nix index 6d3faa2fb7f..ae568bc6db1 100644 --- a/pkgs/development/libraries/science/math/clblas/cuda/default.nix +++ b/pkgs/development/libraries/science/math/clblas/cuda/default.nix @@ -5,6 +5,7 @@ , blas , boost , python +, ocl-icd , cudatoolkit , nvidia_x11 , gtest @@ -51,6 +52,7 @@ stdenv.mkDerivation rec { gfortran blas python + ocl-icd cudatoolkit nvidia_x11 gtest diff --git a/pkgs/development/libraries/shibboleth-sp/default.nix b/pkgs/development/libraries/shibboleth-sp/default.nix new file mode 100644 index 00000000000..f15c72498b2 --- /dev/null +++ b/pkgs/development/libraries/shibboleth-sp/default.nix @@ -0,0 +1,32 @@ +{ stdenv, fetchgit, autoreconfHook, boost, fcgi, openssl, opensaml-cpp, log4shib, pkgconfig, xercesc, xml-security-c, xml-tooling-c }: + +stdenv.mkDerivation rec { + name = "shibboleth-sp-${version}"; + version = "2.6.0"; + + src = fetchgit { + url = "https://git.shibboleth.net/git/cpp-sp.git"; + rev = "9ebba5c3a16d03769f436e383e4c4cdaa33f5509"; + sha256 = "1b5r4nd098lnjwr2g13f04ycqv5fvbrhpwg6fsdk8xy9cigvfzxj"; + }; + + buildInputs = [ boost fcgi openssl opensaml-cpp log4shib pkgconfig xercesc xml-security-c xml-tooling-c ]; + nativeBuildInputs = [ autoreconfHook ]; + + configureFlags = [ + "--without-apxs" + "--with-xmltooling=${xml-tooling-c}" + "--with-saml=${opensaml-cpp}" + "--with-fastcgi" + ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + homepage = "https://shibboleth.net/products/service-provider.html"; + description = "Enables SSO and Federation web applications written with any programming language or framework"; + platforms = platforms.unix; + license = licenses.asl20; + maintainers = [ maintainers.jammerful ]; + }; +} diff --git a/pkgs/development/libraries/speex/default.nix b/pkgs/development/libraries/speex/default.nix index 199c0d00734..602359965f1 100644 --- a/pkgs/development/libraries/speex/default.nix +++ b/pkgs/development/libraries/speex/default.nix @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { ]; meta = with stdenv.lib; { - hompage = http://www.speex.org/; + homepage = http://www.speex.org/; description = "An Open Source/Free Software patent-free audio compression format designed for speech"; license = licenses.bsd3; platforms = platforms.unix; diff --git a/pkgs/development/libraries/speexdsp/default.nix b/pkgs/development/libraries/speexdsp/default.nix index 9ec7d651ccb..a96e808a97e 100644 --- a/pkgs/development/libraries/speexdsp/default.nix +++ b/pkgs/development/libraries/speexdsp/default.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ] ++ stdenv.lib.optional stdenv.isAarch64 "--disable-neon"; meta = with stdenv.lib; { - hompage = http://www.speex.org/; + homepage = http://www.speex.org/; description = "An Open Source/Free Software patent-free audio compression format designed for speech"; license = licenses.bsd3; platforms = platforms.unix; diff --git a/pkgs/development/libraries/ucommon/default.nix b/pkgs/development/libraries/ucommon/default.nix index 64afde3c53b..315566851fb 100644 --- a/pkgs/development/libraries/ucommon/default.nix +++ b/pkgs/development/libraries/ucommon/default.nix @@ -10,11 +10,11 @@ assert xor (openssl != null) (gnutls != null); assert !(xor (openssl != null) (zlib != null)); stdenv.mkDerivation rec { - name = "ucommon-6.3.1"; + name = "ucommon-7.0.0"; src = fetchurl { url = "mirror://gnu/commoncpp/${name}.tar.gz"; - sha256 = "1marbwbqnllhm9nh22lvyfjy802pgy1wx7j7kkpkasbm9r0sb6mm"; + sha256 = "6ac9f76c2af010f97e916e4bae1cece341dc64ca28e3881ff4ddc3bc334060d7"; }; buildInputs = [ pkgconfig ]; diff --git a/pkgs/development/libraries/v8/default.nix b/pkgs/development/libraries/v8/default.nix index 2c6e818b4e1..00fb037168e 100644 --- a/pkgs/development/libraries/v8/default.nix +++ b/pkgs/development/libraries/v8/default.nix @@ -1,5 +1,5 @@ { stdenv, lib, fetchgit, fetchFromGitHub, gyp, readline, python, which, icu -, patchelf, coreutils +, patchelf, coreutils, cctools , doCheck ? false , static ? false }: @@ -126,7 +126,13 @@ stdenv.mkDerivation rec { # Patch based off of: # https://github.com/cowboyd/libv8/tree/v5.1.281.67.0/patches - patches = lib.optional (!doCheck) ./libv8-5.4.232.patch; + patches = lib.optional (!doCheck) ./libv8-5.4.232.patch + ++ stdenv.lib.optionals stdenv.isDarwin [ ./no-xcode.patch ]; + + prePatch = '' + chmod +w tools/gyp/pylib/gyp + chmod +w tools/gyp/pylib/gyp/xcode_emulation.py + ''; postPatch = '' sed -i 's,#!/usr/bin/env python,#!${python}/bin/python,' gypfiles/gyp_v8 @@ -152,12 +158,13 @@ stdenv.mkDerivation rec { ''; nativeBuildInputs = [ which ]; - buildInputs = [ readline python icu patchelf ]; + buildInputs = [ readline python icu patchelf ] + ++ stdenv.lib.optionals stdenv.isDarwin [ cctools ]; NIX_CFLAGS_COMPILE = "-Wno-error=strict-overflow"; buildFlags = [ - "LINK=g++" + "LINK=c++" "-C out" "builddir=$(CURDIR)/Release" "BUILDTYPE=Release" @@ -174,7 +181,7 @@ stdenv.mkDerivation rec { install -vD out/Release/mksnapshot "$out/bin/mksnapshot" ${if static then "" else if stdenv.isDarwin then '' - install -vD out/Release/lib.target/libv8.dylib "$out/lib/libv8.dylib" + install -vD out/Release/libv8.dylib "$out/lib/libv8.dylib" install_name_tool -change /usr/local/lib/libv8.dylib $out/lib/libv8.dylib -change /usr/lib/libgcc_s.1.dylib ${stdenv.cc.cc.lib}/lib/libgcc_s.1.dylib $out/bin/d8 install_name_tool -id $out/lib/libv8.dylib -change /usr/lib/libgcc_s.1.dylib ${stdenv.cc.cc.lib}/lib/libgcc_s.1.dylib $out/lib/libv8.dylib '' else '' @@ -190,7 +197,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Google's open source JavaScript engine"; maintainers = with maintainers; [ cstrahan proglodyte ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; license = licenses.bsd3; }; } diff --git a/pkgs/development/libraries/v8/no-xcode.patch b/pkgs/development/libraries/v8/no-xcode.patch new file mode 100644 index 00000000000..5562ffaf64e --- /dev/null +++ b/pkgs/development/libraries/v8/no-xcode.patch @@ -0,0 +1,64 @@ +--- a/tools/gyp/pylib/gyp/xcode_emulation.py ++++ a/tools/gyp/pylib/gyp/xcode_emulation.py +@@ -473,10 +473,16 @@ + + def _XcodeSdkPath(self, sdk_root): + if sdk_root not in XcodeSettings._sdk_path_cache: +- sdk_path = self._GetSdkVersionInfoItem(sdk_root, '--show-sdk-path') +- XcodeSettings._sdk_path_cache[sdk_root] = sdk_path +- if sdk_root: +- XcodeSettings._sdk_root_cache[sdk_path] = sdk_root ++ try: ++ sdk_path = self._GetSdkVersionInfoItem(sdk_root, '--show-sdk-path') ++ XcodeSettings._sdk_path_cache[sdk_root] = sdk_path ++ if sdk_root: ++ XcodeSettings._sdk_root_cache[sdk_path] = sdk_root ++ except: ++ # if this fails it's because xcodebuild failed, which means ++ # the user is probably on a CLT-only system, where there ++ # is no valid SDK root ++ XcodeSettings._sdk_path_cache[sdk_root] = None + return XcodeSettings._sdk_path_cache[sdk_root] + + def _AppendPlatformVersionMinFlags(self, lst): +@@ -606,10 +612,11 @@ + framework_root = sdk_root + else: + framework_root = '' +- config = self.spec['configurations'][self.configname] +- framework_dirs = config.get('mac_framework_dirs', []) +- for directory in framework_dirs: +- cflags.append('-F' + directory.replace('$(SDKROOT)', framework_root)) ++ if 'SDKROOT' in self._Settings(): ++ config = self.spec['configurations'][self.configname] ++ framework_dirs = config.get('mac_framework_dirs', []) ++ for directory in framework_dirs: ++ cflags.append('-F' + directory.replace('$(SDKROOT)', framework_root)) + + self.configname = None + return cflags +@@ -861,10 +868,11 @@ + sdk_root = self._SdkPath() + if not sdk_root: + sdk_root = '' +- config = self.spec['configurations'][self.configname] +- framework_dirs = config.get('mac_framework_dirs', []) +- for directory in framework_dirs: +- ldflags.append('-F' + directory.replace('$(SDKROOT)', sdk_root)) ++ if 'SDKROOT' in self._Settings(): ++ config = self.spec['configurations'][self.configname] ++ framework_dirs = config.get('mac_framework_dirs', []) ++ for directory in framework_dirs: ++ ldflags.append('-F' + directory.replace('$(SDKROOT)', sdk_root)) + + platform_root = self._XcodePlatformPath(configname) + if sdk_root and platform_root and self._IsXCTest(): +@@ -1358,7 +1366,7 @@ + if version: + version = re.match(r'(\d\.\d\.?\d*)', version).groups()[0] + else: +- raise GypError("No Xcode or CLT version detected!") ++ version = "7.0.0" + # The CLT has no build information, so we return an empty string. + version_list = [version, ''] + version = version_list[0] diff --git a/pkgs/development/libraries/vcg/default.nix b/pkgs/development/libraries/vcg/default.nix index 9e85ad7413d..6225fb18e28 100644 --- a/pkgs/development/libraries/vcg/default.nix +++ b/pkgs/development/libraries/vcg/default.nix @@ -1,12 +1,14 @@ -{ stdenv, fetchsvn, eigen }: +{ stdenv, fetchFromGitHub, eigen }: stdenv.mkDerivation rec { - name = "vcg-2016-02-14"; + name = "vcg-${version}"; + version = "1.0.1"; - src = fetchsvn { - url = "svn://svn.code.sf.net/p/vcg/code/trunk/vcglib"; - rev = 5688; - sha256 = "0hkvz2d8prrjdcc7h0xhfd9hq86lmqg17ml045x4bkiciimx0w5s"; + src = fetchFromGitHub { + owner = "cnr-isti-vclab"; + repo = "vcglib"; + rev = "v${version}"; + sha256 = "0jh8jc8rn7rci8qr3q03q574fk2hsc3rllysck41j8xkr3rmxz2f"; }; propagatedBuildInputs = [ eigen ]; diff --git a/pkgs/development/libraries/vulkan-loader/default.nix b/pkgs/development/libraries/vulkan-loader/default.nix index 4432c22bcd8..f62279786c6 100644 --- a/pkgs/development/libraries/vulkan-loader/default.nix +++ b/pkgs/development/libraries/vulkan-loader/default.nix @@ -1,6 +1,6 @@ { stdenv, fetchgit, fetchFromGitHub, cmake, pkgconfig, git, python3, python3Packages, glslang, spirv-tools, x11, libxcb, libXrandr, - libXext, wayland, mesa_noglu }: + libXext, wayland, mesa_noglu, makeWrapper }: let version = "1.0.42.2"; @@ -16,6 +16,7 @@ stdenv.mkDerivation rec { name = "vulkan-loader-${version}"; inherit version src; + nativeBuildInputs = [ makeWrapper ]; buildInputs = [ cmake pkgconfig git python3 python3Packages.lxml glslang spirv-tools x11 libxcb libXrandr libXext wayland ]; @@ -50,7 +51,10 @@ stdenv.mkDerivation rec { mkdir -p $demos/bin cp demos/*.spv demos/*.ppm $demos/bin find demos -type f -executable -not -name vulkaninfo -exec cp {} $demos/bin \; - ''; + for p in cube cubepp; do + wrapProgram $demos/bin/$p --run "cd $demos/bin" + done + ''; meta = with stdenv.lib; { description = "LunarG Vulkan loader"; diff --git a/pkgs/development/libraries/wxGTK-2.8/default.nix b/pkgs/development/libraries/wxwidgets/2.8/default.nix index 9538f1dd1f8..15db4386e01 100644 --- a/pkgs/development/libraries/wxGTK-2.8/default.nix +++ b/pkgs/development/libraries/wxwidgets/2.8/default.nix @@ -65,6 +65,10 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; meta = { - platforms = stdenv.lib.platforms.linux; + platforms = platforms.linux; + license = licenses.wxWindows; + homepage = "https://www.wxwidgets.org/"; + description = "a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base"; + longDescription = "wxWidgets gives you a single, easy-to-use API for writing GUI applications on multiple platforms that still utilize the native platform's controls and utilities. Link with the appropriate library for your platform and compiler, and your application will adopt the look and feel appropriate to that platform. On top of great GUI functionality, wxWidgets gives you: online help, network programming, streams, clipboard and drag and drop, multithreading, image loading and saving in a variety of popular formats, database support, HTML viewing and printing, and much more."; }; } diff --git a/pkgs/development/libraries/wxGTK-2.9/default.nix b/pkgs/development/libraries/wxwidgets/2.9/default.nix index 28cd79b5549..af9dde75cf4 100644 --- a/pkgs/development/libraries/wxGTK-2.9/default.nix +++ b/pkgs/development/libraries/wxwidgets/2.9/default.nix @@ -67,6 +67,10 @@ stdenv.mkDerivation { enableParallelBuilding = true; meta = { - platforms = with stdenv.lib.platforms; darwin ++ linux; + platforms = with platforms; darwin ++ linux; + license = licenses.wxWindows; + homepage = "https://www.wxwidgets.org/"; + description = "a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base"; + longDescription = "wxWidgets gives you a single, easy-to-use API for writing GUI applications on multiple platforms that still utilize the native platform's controls and utilities. Link with the appropriate library for your platform and compiler, and your application will adopt the look and feel appropriate to that platform. On top of great GUI functionality, wxWidgets gives you: online help, network programming, streams, clipboard and drag and drop, multithreading, image loading and saving in a variety of popular formats, database support, HTML viewing and printing, and much more."; }; } diff --git a/pkgs/development/libraries/wxGTK-3.0/default.nix b/pkgs/development/libraries/wxwidgets/3.0/default.nix index 4fea863827f..5b1e0fc067c 100644 --- a/pkgs/development/libraries/wxGTK-3.0/default.nix +++ b/pkgs/development/libraries/wxwidgets/3.0/default.nix @@ -78,6 +78,10 @@ stdenv.mkDerivation { enableParallelBuilding = true; meta = { - platforms = with stdenv.lib.platforms; darwin ++ linux; + platforms = with platforms; darwin ++ linux; + license = licenses.wxWindows; + homepage = "https://www.wxwidgets.org/"; + description = "a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base"; + longDescription = "wxWidgets gives you a single, easy-to-use API for writing GUI applications on multiple platforms that still utilize the native platform's controls and utilities. Link with the appropriate library for your platform and compiler, and your application will adopt the look and feel appropriate to that platform. On top of great GUI functionality, wxWidgets gives you: online help, network programming, streams, clipboard and drag and drop, multithreading, image loading and saving in a variety of popular formats, database support, HTML viewing and printing, and much more."; }; } diff --git a/pkgs/development/libraries/wxmac/default.nix b/pkgs/development/libraries/wxwidgets/3.0/mac.nix index f4e71424833..fc747268cab 100644 --- a/pkgs/development/libraries/wxmac/default.nix +++ b/pkgs/development/libraries/wxwidgets/3.0/mac.nix @@ -100,6 +100,10 @@ stdenv.mkDerivation rec { meta = { platforms = platforms.darwin; + license = licenses.wxWindows; maintainers = [ maintainers.lnl7 ]; + homepage = "https://www.wxwidgets.org/"; + description = "a C++ library that lets developers create applications for Windows, Mac OS X, Linux and other platforms with a single code base"; + longDescription = "wxWidgets gives you a single, easy-to-use API for writing GUI applications on multiple platforms that still utilize the native platform's controls and utilities. Link with the appropriate library for your platform and compiler, and your application will adopt the look and feel appropriate to that platform. On top of great GUI functionality, wxWidgets gives you: online help, network programming, streams, clipboard and drag and drop, multithreading, image loading and saving in a variety of popular formats, database support, HTML viewing and printing, and much more."; }; } diff --git a/pkgs/development/libraries/xalanc/default.nix b/pkgs/development/libraries/xalanc/default.nix index 8284fd7707f..28575f4c5d5 100644 --- a/pkgs/development/libraries/xalanc/default.nix +++ b/pkgs/development/libraries/xalanc/default.nix @@ -1,6 +1,10 @@ -{ stdenv, fetchurl, xercesc }: +{ stdenv, fetchurl, xercesc, getopt }: -stdenv.mkDerivation rec { +let + platform = if stdenv.isLinux then "linux" else + if stdenv.isDarwin then "macosx" else + throw "Unsupported platform"; +in stdenv.mkDerivation rec { name = "xalan-c-${version}"; version = "1.11"; @@ -9,20 +13,21 @@ stdenv.mkDerivation rec { sha256 = "0a3a2b15vpacnqgpp6fiy1pwyc8q6ywzvyb5445f6wixfdspypjg"; }; + # TODO: should we really be putting outputs in $out/usr? I'd expect -P$out below configurePhase = '' export XALANCROOT=`pwd`/c cd `pwd`/c mkdir -p $out/usr - ./runConfigure -p linux -c gcc -x g++ -P$out/usr + ./runConfigure -p ${platform} -c cc -x c++ -P$out/usr ''; - buildInputs = [ xercesc ]; + buildInputs = [ xercesc getopt ]; meta = { homepage = http://xalan.apache.org/; description = "A XSLT processor for transforming XML documents"; license = stdenv.lib.licenses.asl20; - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin; maintainers = [ stdenv.lib.maintainers.jagajaga ]; }; } diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix index e461ce858cf..764200c89f5 100644 --- a/pkgs/development/libraries/xapian/default.nix +++ b/pkgs/development/libraries/xapian/default.nix @@ -1,8 +1,10 @@ -{ stdenv, fetchurl, libuuid, zlib }: +{ stdenv, fetchurl, autoreconfHook +, libuuid, zlib }: let generic = version: sha256: stdenv.mkDerivation rec { name = "xapian-${version}"; + passthru = { inherit version; }; src = fetchurl { url = "http://oligarchy.co.uk/xapian/${version}/xapian-core-${version}.tar.xz"; @@ -12,17 +14,27 @@ let outputs = [ "out" "doc" ]; buildInputs = [ libuuid zlib ]; + nativeBuildInputs = [ autoreconfHook ]; - meta = { + doCheck = true; + + # the configure script thinks that Darwin has ___exp10 + # but it’s not available on my systems (or hydra apparently) + postConfigure = stdenv.lib.optionalString stdenv.isDarwin '' + substituteInPlace config.h \ + --replace "#define HAVE___EXP10 1" "#undef HAVE___EXP10" + ''; + + meta = with stdenv.lib; { description = "Search engine library"; homepage = http://xapian.org/; - license = stdenv.lib.licenses.gpl2Plus; - maintainers = [ stdenv.lib.maintainers.chaoflow ]; - platforms = stdenv.lib.platforms.unix; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ chaoflow ]; + platforms = platforms.unix; }; }; in { - # used by xapian-ruby + # xapian-ruby needs 1.2.22 as of 2017-05-06 xapian_1_2_22 = generic "1.2.22" "0zsji22n0s7cdnbgj0kpil05a6bgm5cfv0mvx12d8ydg7z58g6r6"; - xapian_1_4_0 = generic "1.4.0" "0xv4da5rmqqzkkkzx2v3jwh5hz5zxhd2b7m8x30fk99a25blyn0h"; + xapian_1_4_4 = generic "1.4.4" "1n9j2w2as0flih3hgim7gprfxsx6gimijs91rxsjsi8shjlqbad6"; } diff --git a/pkgs/development/libraries/xapian/tools/omega/default.nix b/pkgs/development/libraries/xapian/tools/omega/default.nix index 7c64c2e90d4..2923bfc1fc6 100644 --- a/pkgs/development/libraries/xapian/tools/omega/default.nix +++ b/pkgs/development/libraries/xapian/tools/omega/default.nix @@ -2,14 +2,15 @@ stdenv.mkDerivation rec { name = "xapian-omega-${version}"; - version = (builtins.parseDrvName xapian.name).version; + inherit (xapian) version; src = fetchurl { url = "http://oligarchy.co.uk/xapian/${version}/xapian-omega-${version}.tar.xz"; - sha256 = "07s341m1csk4v7mc44mqrzc1nxpnmdkji9k1cirbx6q0nlshdz0h"; + sha256 = "0pl9gs0sbavxykfgrkm8syswqnfynmmqhf8429bv8a5qjh5pkp8l"; }; - buildInputs = [ pkgconfig xapian perl pcre zlib libmagic ]; + buildInputs = [ xapian perl pcre zlib libmagic ]; + nativeBuildInputs = [ pkgconfig ]; meta = with stdenv.lib; { description = "Indexer and CGI search front-end built on Xapian library"; diff --git a/pkgs/development/libraries/xcb-util-cursor/HEAD.nix b/pkgs/development/libraries/xcb-util-cursor/HEAD.nix index af1a3b4e095..81ac75489ba 100644 --- a/pkgs/development/libraries/xcb-util-cursor/HEAD.nix +++ b/pkgs/development/libraries/xcb-util-cursor/HEAD.nix @@ -2,7 +2,8 @@ , git, xorg, gnum4, libxcb, gperf }: stdenv.mkDerivation rec { - name = "xcb-util-cursor-0.1.1-3-gf03cc27"; + name = "xcb-util-cursor-0.1.1-3-unstable-${version}"; + version = "2017-04-05"; src = fetchgit { url = http://anongit.freedesktop.org/git/xcb/util-cursor.git; diff --git a/pkgs/development/libraries/xml-security-c/default.nix b/pkgs/development/libraries/xml-security-c/default.nix index 1932acbd7ed..37936caf2b9 100644 --- a/pkgs/development/libraries/xml-security-c/default.nix +++ b/pkgs/development/libraries/xml-security-c/default.nix @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { homepage = http://santuario.apache.org/; description = "C++ Implementation of W3C security standards for XML"; license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.unix; maintainers = [ stdenv.lib.maintainers.jagajaga ]; }; } diff --git a/pkgs/development/libraries/xml-tooling-c/default.nix b/pkgs/development/libraries/xml-tooling-c/default.nix new file mode 100644 index 00000000000..f2d7711c9f0 --- /dev/null +++ b/pkgs/development/libraries/xml-tooling-c/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchgit, autoreconfHook, boost, curl, openssl, log4shib, xercesc, xml-security-c }: + +stdenv.mkDerivation rec { + name = "xml-tooling-c-${version}"; + version = "1.6.0"; + + src = fetchgit { + url = "https://git.shibboleth.net/git/cpp-xmltooling.git"; + rev = "db08101c3854518a59096be95ed6564838381744"; + sha256 = "0rhzvxm4z3pm28kpk34hayhm12bjjms2kygv1z68vnz8ijzgcinq"; + }; + + buildInputs = [ boost curl openssl log4shib xercesc xml-security-c ]; + nativeBuildInputs = [ autoreconfHook ]; + + enableParallelBuilding = true; + + meta = with stdenv.lib; { + description = "A low-level library that provides a high level interface to XML processing for OpenSAML 2"; + platforms = platforms.unix; + license = licenses.asl20; + maintainers = [ maintainers.jammerful ]; + }; +} diff --git a/pkgs/development/libraries/zimg/default.nix b/pkgs/development/libraries/zimg/default.nix index 7fb14de7951..961220bb783 100644 --- a/pkgs/development/libraries/zimg/default.nix +++ b/pkgs/development/libraries/zimg/default.nix @@ -17,7 +17,7 @@ stdenv.mkDerivation rec{ description = "Scaling, colorspace conversion and dithering library"; homepage = https://github.com/sekrit-twc/zimg; license = licenses.wtfpl; - platforms = platforms.linux; # check upstream issue #52 + platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ rnhmjoj ]; }; } diff --git a/pkgs/development/misc/avr-gcc-with-avr-libc/default.nix b/pkgs/development/misc/avr-gcc-with-avr-libc/default.nix index 237c4e4027f..1035757fb80 100644 --- a/pkgs/development/misc/avr-gcc-with-avr-libc/default.nix +++ b/pkgs/development/misc/avr-gcc-with-avr-libc/default.nix @@ -71,7 +71,6 @@ stdenv.mkDerivation { description = "AVR development environment including binutils, avr-gcc and avr-libc"; # I've tried compiling the packages separately.. too much hassle. This just works. Fine. license = ["GPL" "LGPL"]; # see single packages .. - homepage = []; # dito platforms = platforms.linux; }; } diff --git a/pkgs/development/mobile/androidenv/platforms-linux.nix b/pkgs/development/mobile/androidenv/platforms-linux.nix index 4f3f45f4cc9..bdf3f545480 100644 --- a/pkgs/development/mobile/androidenv/platforms-linux.nix +++ b/pkgs/development/mobile/androidenv/platforms-linux.nix @@ -24,7 +24,7 @@ in }; meta = { description = "Android SDK Platform 2"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -36,7 +36,7 @@ in }; meta = { description = "Android SDK Platform 3"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -48,7 +48,7 @@ in }; meta = { description = "Android SDK Platform 4"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -60,7 +60,7 @@ in }; meta = { description = "Android SDK Platform 5"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -72,7 +72,7 @@ in }; meta = { description = "Android SDK Platform 6"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -84,7 +84,7 @@ in }; meta = { description = "Android SDK Platform 7"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -96,7 +96,7 @@ in }; meta = { description = "Android SDK Platform 8"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -108,7 +108,7 @@ in }; meta = { description = "Android SDK Platform 9"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -120,7 +120,7 @@ in }; meta = { description = "Android SDK Platform 10"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -132,7 +132,7 @@ in }; meta = { description = "Android SDK Platform 11"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -144,7 +144,7 @@ in }; meta = { description = "Android SDK Platform 12"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -156,7 +156,7 @@ in }; meta = { description = "Android SDK Platform 13"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -168,7 +168,7 @@ in }; meta = { description = "Android SDK Platform 14"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -180,7 +180,7 @@ in }; meta = { description = "Android SDK Platform 15"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -192,7 +192,7 @@ in }; meta = { description = "Android SDK Platform 16"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -204,7 +204,7 @@ in }; meta = { description = "Android SDK Platform 17"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -216,7 +216,7 @@ in }; meta = { description = "Android SDK Platform 18"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -228,7 +228,7 @@ in }; meta = { description = "Android SDK Platform 19"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -240,7 +240,7 @@ in }; meta = { description = "Android SDK Platform 20"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -252,7 +252,7 @@ in }; meta = { description = "Android SDK Platform 21"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -264,7 +264,7 @@ in }; meta = { description = "Android SDK Platform 22"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -276,7 +276,7 @@ in }; meta = { description = "Android SDK Platform 23"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -288,7 +288,7 @@ in }; meta = { description = "Android SDK Platform 24"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -300,7 +300,7 @@ in }; meta = { description = "Android SDK Platform 25"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; diff --git a/pkgs/development/mobile/androidenv/platforms-macosx.nix b/pkgs/development/mobile/androidenv/platforms-macosx.nix index d8619b7c0f5..7bcc5f40769 100644 --- a/pkgs/development/mobile/androidenv/platforms-macosx.nix +++ b/pkgs/development/mobile/androidenv/platforms-macosx.nix @@ -24,7 +24,7 @@ in }; meta = { description = "Android SDK Platform 2"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -36,7 +36,7 @@ in }; meta = { description = "Android SDK Platform 3"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -48,7 +48,7 @@ in }; meta = { description = "Android SDK Platform 4"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -60,7 +60,7 @@ in }; meta = { description = "Android SDK Platform 5"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -72,7 +72,7 @@ in }; meta = { description = "Android SDK Platform 6"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -84,7 +84,7 @@ in }; meta = { description = "Android SDK Platform 7"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -96,7 +96,7 @@ in }; meta = { description = "Android SDK Platform 8"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -108,7 +108,7 @@ in }; meta = { description = "Android SDK Platform 9"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -120,7 +120,7 @@ in }; meta = { description = "Android SDK Platform 10"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -132,7 +132,7 @@ in }; meta = { description = "Android SDK Platform 11"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -144,7 +144,7 @@ in }; meta = { description = "Android SDK Platform 12"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -156,7 +156,7 @@ in }; meta = { description = "Android SDK Platform 13"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -168,7 +168,7 @@ in }; meta = { description = "Android SDK Platform 14"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -180,7 +180,7 @@ in }; meta = { description = "Android SDK Platform 15"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -192,7 +192,7 @@ in }; meta = { description = "Android SDK Platform 16"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -204,7 +204,7 @@ in }; meta = { description = "Android SDK Platform 17"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -216,7 +216,7 @@ in }; meta = { description = "Android SDK Platform 18"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -228,7 +228,7 @@ in }; meta = { description = "Android SDK Platform 19"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -240,7 +240,7 @@ in }; meta = { description = "Android SDK Platform 20"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -252,7 +252,7 @@ in }; meta = { description = "Android SDK Platform 21"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -264,7 +264,7 @@ in }; meta = { description = "Android SDK Platform 22"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -276,7 +276,7 @@ in }; meta = { description = "Android SDK Platform 23"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -288,7 +288,7 @@ in }; meta = { description = "Android SDK Platform 24"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; @@ -300,7 +300,7 @@ in }; meta = { description = "Android SDK Platform 25"; - url = http://developer.android.com/sdk/; + homepage = http://developer.android.com/sdk/; }; }; diff --git a/pkgs/development/node-packages/README.md b/pkgs/development/node-packages/README.md index 138d1475c2f..c1ed650f232 100644 --- a/pkgs/development/node-packages/README.md +++ b/pkgs/development/node-packages/README.md @@ -2,7 +2,7 @@ Node.js packages =============== To add a package from [NPM](https://www.npmjs.com/) to nixpkgs: - 1. Install node2nix: `nix-env -f '<nixpkgs>' -iA node2nix`. + 1. Install node2nix: `nix-env -f '<nixpkgs>' -iA nodePackages.node2nix`. 2. Modify `pkgs/development/node-packages/node-packages.json`, to add, update, or remove package entries. 3. Run the script: `cd pkgs/development/node-packages && sh generate.sh`. diff --git a/pkgs/development/ocaml-modules/base/default.nix b/pkgs/development/ocaml-modules/base/default.nix index 4c92c7f1ca1..f7627567f9c 100644 --- a/pkgs/development/ocaml-modules/base/default.nix +++ b/pkgs/development/ocaml-modules/base/default.nix @@ -1,5 +1,8 @@ { stdenv, fetchurl, ocaml, jbuilder, findlib }: +if !stdenv.lib.versionAtLeast ocaml.version "4.03" +then throw "base is not available for OCaml ${ocaml.version}" else + stdenv.mkDerivation { name = "ocaml${ocaml.version}-base-0.9.0"; diff --git a/pkgs/development/ocaml-modules/functoria/default.nix b/pkgs/development/ocaml-modules/functoria/default.nix index bfcdd4168ca..2d8c00c7238 100644 --- a/pkgs/development/ocaml-modules/functoria/default.nix +++ b/pkgs/development/ocaml-modules/functoria/default.nix @@ -2,6 +2,9 @@ , bos, cmdliner, ocamlgraph }: +if !stdenv.lib.versionAtLeast ocaml.version "4.03" +then throw "functoria is not available for OCaml ${ocaml.version}" else + stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-functoria-${version}"; version = "2.0.2"; diff --git a/pkgs/development/ocaml-modules/lambda-term/default.nix b/pkgs/development/ocaml-modules/lambda-term/default.nix index f66773d426a..86e4ebccbae 100644 --- a/pkgs/development/ocaml-modules/lambda-term/default.nix +++ b/pkgs/development/ocaml-modules/lambda-term/default.nix @@ -1,10 +1,10 @@ -{ stdenv, fetchurl, libev, ocaml, findlib, ocamlbuild, ocaml_lwt, ocaml_react, zed }: +{ stdenv, buildOcaml, fetchurl, libev, ocaml, findlib, ocamlbuild, ocaml_lwt, ocaml_react, zed }: assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01"; -stdenv.mkDerivation rec { +buildOcaml rec { version = "1.10"; - name = "lambda-term-${version}"; + name = "lambda-term"; src = fetchurl { url = "https://github.com/diml/lambda-term/archive/${version}.tar.gz"; @@ -17,6 +17,8 @@ stdenv.mkDerivation rec { createFindlibDestdir = true; + hasSharedObjects = true; + meta = { description = "Terminal manipulation library for OCaml"; longDescription = '' Lambda-term is a cross-platform library for diff --git a/pkgs/development/ocaml-modules/llvm/default.nix b/pkgs/development/ocaml-modules/llvm/default.nix index b06760a6e00..3bced92cc3e 100644 --- a/pkgs/development/ocaml-modules/llvm/default.nix +++ b/pkgs/development/ocaml-modules/llvm/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation { patches = [ (fetchpatch { url = https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/llvm/llvm.3.9/files/cmake.patch; - sha256 = "0vjap0xifgm59rwhjc48wi7jpbbif4dllsy4xs45sg95qq5qanp6"; + sha256 = "1fcc6ylfiw1npdhx7mrsj7h0dx7cym7i9664kpr76zqazb52ikm9"; })]; cmakeFlags = [ "-DLLVM_OCAML_OUT_OF_TREE=TRUE" ]; diff --git a/pkgs/development/ocaml-modules/lwt/default.nix b/pkgs/development/ocaml-modules/lwt/default.nix index 53d5a25a39e..d450a877517 100644 --- a/pkgs/development/ocaml-modules/lwt/default.nix +++ b/pkgs/development/ocaml-modules/lwt/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchzip, which, cryptopp, ocaml, findlib, ocamlbuild, camlp4 +{ stdenv, buildOcaml, fetchzip, which, cryptopp, ocaml, findlib, ocamlbuild, camlp4 , ocaml_react, ocaml_ssl, libev, pkgconfig, ncurses, ocaml_oasis, glib , ppx_tools, result, cppo , ppxSupport ? stdenv.lib.versionAtLeast ocaml.version "4.02" @@ -15,8 +15,8 @@ let param = }; in -stdenv.mkDerivation rec { - name = "ocaml-lwt-${version}"; +buildOcaml rec { + name = "lwt"; inherit (param) version; src = fetchzip { @@ -36,6 +36,8 @@ stdenv.mkDerivation rec { createFindlibDestdir = true; + hasSharedObjects = true; + meta = with stdenv.lib; { homepage = http://ocsigen.org/lwt; description = "Lightweight thread library for Objective Caml"; diff --git a/pkgs/development/ocaml-modules/merlin_extend/default.nix b/pkgs/development/ocaml-modules/merlin_extend/default.nix new file mode 100644 index 00000000000..79b8b69bbb5 --- /dev/null +++ b/pkgs/development/ocaml-modules/merlin_extend/default.nix @@ -0,0 +1,26 @@ +{ stdenv, buildOcaml, fetchFromGitHub, cppo }: + +buildOcaml rec { + name = "merlin_extend"; + version = "0.3"; + + minimumSupportedOcamlVersion = "4.02"; + + src = fetchFromGitHub { + owner = "let-def"; + repo = "merlin-extend"; + sha256 = "1z6hybcb7ry0bkzjd0r2dlcgjnhhxdsr06x3h03sj7h5fihsc7vd"; + rev = "v${version}"; + }; + + buildInputs = [ cppo ]; + + createFindlibDestdir = true; + + meta = with stdenv.lib; { + homepage = https://github.com/let-def/merlin-extend; + description = "SDK to extend Merlin"; + license = licenses.mit; + maintainers = [ maintainers.volth ]; + }; +} diff --git a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix index 3694dd2d6ab..a056cdeb1b5 100644 --- a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-ocaml-migrate-parsetree-${version}"; - version = "0.5"; + version = "0.7"; src = fetchFromGitHub { owner = "let-def"; repo = "ocaml-migrate-parsetree"; rev = "v${version}"; - sha256 = "023lnd3kxa3d4zgsvv0z2lyzhg05zcgagy18vaalimbza57wq83h"; + sha256 = "142svvixhz153argd3khk7sr38dhiy4w6sck4766f8b48p41pp3m"; }; buildInputs = [ ocaml findlib ocamlbuild jbuilder ]; diff --git a/pkgs/development/ocaml-modules/octavius/default.nix b/pkgs/development/ocaml-modules/octavius/default.nix new file mode 100644 index 00000000000..f1668160df1 --- /dev/null +++ b/pkgs/development/ocaml-modules/octavius/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, topkg, opam }: + +if !stdenv.lib.versionAtLeast ocaml.version "4.03" +then throw "octavius is not available for OCaml ${ocaml.version}" else + +stdenv.mkDerivation { + name = "ocaml${ocaml.version}-octavius-0.2.0"; + src = fetchurl { + url = http://github.com/ocaml-doc/octavius/releases/download/v0.2.0/octavius-0.2.0.tbz; + sha256 = "02milzzlr4xk5aymg2fjz27f528d5pyscqvld3q0dm41zcpkz5ml"; + }; + + unpackCmd = "tar xjf $src"; + + buildInputs = [ ocaml findlib ocamlbuild topkg opam ]; + + inherit (topkg) buildPhase installPhase; + + meta = { + description = "Ocamldoc comment syntax parser"; + homepage = https://github.com/ocaml-doc/octavius; + license = stdenv.lib.licenses.isc; + maintainers = [ stdenv.lib.maintainers.vbgl ]; + inherit (ocaml.meta) platforms; + }; +} diff --git a/pkgs/development/ocaml-modules/ocurl/default.nix b/pkgs/development/ocaml-modules/ocurl/default.nix index 974779e473f..94c2e120883 100644 --- a/pkgs/development/ocaml-modules/ocurl/default.nix +++ b/pkgs/development/ocaml-modules/ocurl/default.nix @@ -7,7 +7,8 @@ stdenv.mkDerivation rec { sha256 = "0yn7f3g5wva8nqxh76adpq9rihggc405jkqysfghzwnf3yymyqrr"; }; - buildInputs = [ocaml findlib curl ncurses]; + buildInputs = [ ocaml findlib ncurses ]; + propagatedBuildInputs = [ curl ]; createFindlibDestdir = true; meta = { description = "OCaml bindings to libcurl"; diff --git a/pkgs/development/ocaml-modules/ppx_tools_versioned/default.nix b/pkgs/development/ocaml-modules/ppx_tools_versioned/default.nix new file mode 100644 index 00000000000..c402c6be4f1 --- /dev/null +++ b/pkgs/development/ocaml-modules/ppx_tools_versioned/default.nix @@ -0,0 +1,26 @@ +{ stdenv, buildOcaml, fetchFromGitHub, ocaml-migrate-parsetree }: + +buildOcaml rec { + name = "ppx_tools_versioned"; + version = "5.0alpha"; + + minimumSupportedOcamlVersion = "4.02"; + + src = fetchFromGitHub { + owner = "let-def"; + repo = "ppx_tools_versioned"; + rev = version; + sha256 = "0sa3w0plpa0s202s9yjgz7dbk32xd2s6fymkjijrhj4lkvh08mba"; + }; + + propagatedBuildInputs = [ ocaml-migrate-parsetree ]; + + createFindlibDestdir = true; + + meta = with stdenv.lib; { + homepage = https://github.com/let-def/ppx_tools_versioned; + description = "Tools for authors of syntactic tools (such as ppx rewriters)"; + license = licenses.gpl2; + maintainers = [ maintainers.volth ]; + }; +} diff --git a/pkgs/development/ocaml-modules/spacetime_lib/default.nix b/pkgs/development/ocaml-modules/spacetime_lib/default.nix index c12e47968ef..1eb789ec269 100644 --- a/pkgs/development/ocaml-modules/spacetime_lib/default.nix +++ b/pkgs/development/ocaml-modules/spacetime_lib/default.nix @@ -1,5 +1,8 @@ { stdenv, fetchFromGitHub, ocaml, findlib, owee }: +if !stdenv.lib.versionAtLeast ocaml.version "4.04" +then throw "spacetime_lib is not available for OCaml ${ocaml.version}" else + stdenv.mkDerivation rec { name = "ocaml${ocaml.version}-spacetime_lib-${version}"; version = "0.1.0"; diff --git a/pkgs/development/perl-modules/File-Slurp/silence-deprecation.patch b/pkgs/development/perl-modules/File-Slurp/silence-deprecation.patch new file mode 100644 index 00000000000..7b513f21a29 --- /dev/null +++ b/pkgs/development/perl-modules/File-Slurp/silence-deprecation.patch @@ -0,0 +1,10 @@ +--- File-Slurp-9999.19.orig/lib/File/Slurp.pm 2011-05-30 21:58:53.000000000 +0200 ++++ File-Slurp-9999.19/lib/File/Slurp.pm 2017-04-28 10:05:59.047681755 +0200 +@@ -4,6 +4,7 @@ + + use strict; + use warnings ; ++no warnings 'deprecated'; + + use Carp ; + use Exporter ; diff --git a/pkgs/development/python-modules/3to2/default.nix b/pkgs/development/python-modules/3to2/default.nix new file mode 100644 index 00000000000..4941db3c996 --- /dev/null +++ b/pkgs/development/python-modules/3to2/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchurl +, pytest +}: + +buildPythonPackage rec { + pname = "3to2"; + version = "1.1.1"; + name = "${pname}-${version}"; + + src = fetchurl { + url = "https://files.pythonhosted.org/packages/8f/ab/58a363eca982c40e9ee5a7ca439e8ffc5243dde2ae660ba1ffdd4868026b/${pname}-${version}.zip"; + sha256 = "fef50b2b881ef743f269946e1090b77567b71bb9a9ce64b7f8e699b562ff685c"; + }; + + checkInputs = [ pytest ]; + + checkPhase = '' + py.test lib3to2/tests + ''; + + # Test failing due to upstream issue (https://bitbucket.org/amentajo/lib3to2/issues/50/testsuite-fails-with-new-python-35) + doCheck = false; + + meta = { + homepage = https://bitbucket.org/amentajo/lib3to2; + description = "Refactors valid 3.x syntax into valid 2.x syntax, if a syntactical conversion is possible"; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ mt-caret ]; + }; +} diff --git a/pkgs/development/python-modules/APScheduler/default.nix b/pkgs/development/python-modules/APScheduler/default.nix new file mode 100644 index 00000000000..a556aebc47e --- /dev/null +++ b/pkgs/development/python-modules/APScheduler/default.nix @@ -0,0 +1,65 @@ +{ lib +, buildPythonPackage +, fetchPypi +, setuptools_scm +, pytest +, pytestcov +, sqlalchemy +, tornado +, twisted +, mock +, trollius +, gevent +, six +, pytz +, tzlocal +, funcsigs +, futures +, isPy3k +}: + +buildPythonPackage rec { + pname = "APScheduler"; + version = "3.3.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "f68874dff1bdffcc6ce3adb7840c1e4d162c609a3e3f831351df30b75732767b"; + }; + + buildInputs = [ + setuptools_scm + ]; + + checkInputs = [ + pytest + pytestcov + sqlalchemy + tornado + twisted + mock + trollius + gevent + ]; + + propagatedBuildInputs = [ + six + pytz + tzlocal + funcsigs + ] ++ lib.optional (!isPy3k) futures; + + checkPhase = '' + py.test + ''; + + # Somehow it cannot find pytestcov + doCheck = false; + + meta = with lib; { + description = "A Python library that lets you schedule your Python code to be executed"; + homepage = http://pypi.python.org/pypi/APScheduler/; + license = licenses.mit; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/PyLD/default.nix b/pkgs/development/python-modules/PyLD/default.nix new file mode 100644 index 00000000000..e4edaf83a25 --- /dev/null +++ b/pkgs/development/python-modules/PyLD/default.nix @@ -0,0 +1,56 @@ +{ stdenv, fetchPypi, buildPythonPackage, fetchFromGitHub, python, gnugrep }: + +let + + json-ld = fetchFromGitHub { + owner = "json-ld"; + repo = "json-ld.org"; + rev = "843a70e4523d7cd2a4d3f5325586e726eb1b123f"; + sha256 = "05j0nq6vafclyypxjj30iw898ig0m32nvz0rjdlslx6lawkiwb2a"; + }; + + normalization = fetchFromGitHub { + owner = "json-ld"; + repo = "normalization"; + rev = "aceeaf224b64d6880189d795bd99c3ffadb5d79e"; + sha256 = "125q5rllfm8vg9mz8hn7bhvhv2vqpd86kx2kxlk84smh33l8kbyl"; + }; + +in + +buildPythonPackage rec { + pname = "PyLD"; + version = "0.7.2"; + name = "${pname}-${version}"; + + src = fetchFromGitHub { + owner = "digitalbazaar"; + repo = "pyld"; + rev = "652473f828e9a396d4c1db9addbd294fb7db1797"; + sha256 = "1bmpz4s6j7by6l45wwxy7dn7hmrhxc26kbx2hbfy41x29vbjg6j9"; + }; + + # Unfortunately PyLD does not pass all testcases in the JSON-LD corpus. We + # check for at least a minimum amount of successful tests so we know it's not + # getting worse, at least. + checkPhase = '' + ok_min=401 + + if ! ${python.interpreter} tests/runtests.py -d ${json-ld}/test-suite 2>&1 | tee test.out; then + ok_count=$(${gnugrep}/bin/grep -F '... ok' test.out | wc -l) + if [[ $ok_count -lt $ok_min ]]; then + echo "Less than $ok_min tests passed ($ok_count). Failing the build." + exit 1 + fi + fi + + ${python.interpreter} tests/runtests.py -d ${normalization}/tests + ''; + + meta = with stdenv.lib; { + description = "Python implementation of the JSON-LD API"; + homepage = "https://github.com/digitalbazaar/pyld"; + license = licenses.bsd3; + maintainers = with maintainers; [ apeschar ]; + }; +} diff --git a/pkgs/development/python-modules/Pygments/default.nix b/pkgs/development/python-modules/Pygments/default.nix new file mode 100644 index 00000000000..11a6fc96eb2 --- /dev/null +++ b/pkgs/development/python-modules/Pygments/default.nix @@ -0,0 +1,28 @@ +{ lib +, buildPythonPackage +, fetchPypi +, docutils +}: + +buildPythonPackage rec { + pname = "Pygments"; + version = "2.2.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1k78qdvir1yb1c634nkv6rbga8wv4289xarghmsbbvzhvr311bnv"; + }; + + propagatedBuildInputs = [ docutils ]; + + # Circular dependency with sphinx + doCheck = false; + + meta = { + homepage = http://pygments.org/; + description = "A generic syntax highlighter"; + license = lib.licenses.bsd2; + maintainers = with lib.maintainers; [ nckx garbas ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/Wand/default.nix b/pkgs/development/python-modules/Wand/default.nix new file mode 100644 index 00000000000..f7b6aeae615 --- /dev/null +++ b/pkgs/development/python-modules/Wand/default.nix @@ -0,0 +1,51 @@ +{ stdenv +, lib +, buildPythonPackage +, fetchPypi +, imagemagick +, pytest +, psutil +, memory_profiler +, pytest_xdist +, sharedLibraryExtension +}: + +let + magick_wand_library = "${imagemagick}/lib/libMagickWand-6.Q16${sharedLibraryExtension}"; + imagemagick_library = "${imagemagick}/lib/libMagickCore-6.Q16${sharedLibraryExtension}"; +in buildPythonPackage rec { + pname = "Wand"; + version = "0.4.4"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "28e0454c9d16d69c5d5034918d96320d8f9f1377b4fdaf4944eec2f938c74704"; + }; + + checkInputs = [ pytest pytest_xdist memory_profiler psutil ]; + + buildInputs = [ imagemagick ]; + + patches = [ + ./libraries.patch + ]; + + inherit magick_wand_library imagemagick_library; + + postPatch = '' + substituteAllInPlace wand/api.py + ''; + + # No tests + doCheck = false; + meta = { + description = "Ctypes-based simple MagickWand API binding for Python"; + homepage = http://wand-py.org/; + license = with lib.licenses; [ mit ]; + }; + + passthru = { + inherit imagemagick; + }; +} diff --git a/pkgs/development/python-modules/Wand/libraries.patch b/pkgs/development/python-modules/Wand/libraries.patch new file mode 100644 index 00000000000..15b19f5168b --- /dev/null +++ b/pkgs/development/python-modules/Wand/libraries.patch @@ -0,0 +1,149 @@ +diff --git a/wand/api.py b/wand/api.py +index 2c18513..1a1b511 100644 +--- a/wand/api.py ++++ b/wand/api.py +@@ -43,98 +43,6 @@ class c_magick_char_p(ctypes.c_char_p): + """ + library.MagickRelinquishMemory(self) + +- +-def library_paths(): +- """Iterates for library paths to try loading. The result paths are not +- guaranteed that they exist. +- +- :returns: a pair of libwand and libmagick paths. they can be the same. +- path can be ``None`` as well +- :rtype: :class:`tuple` +- +- """ +- libwand = None +- libmagick = None +- versions = '', '-6', '-Q16', '-Q8', '-6.Q16' +- options = '', 'HDRI', 'HDRI-2' +- system = platform.system() +- magick_home = os.environ.get('MAGICK_HOME') +- +- if system == 'Windows': +- # ImageMagick installers normally install coder and filter DLLs in +- # subfolders, we need to add those folders to PATH, otherwise loading +- # the DLL later will fail. +- try: +- with winreg.OpenKey(winreg.HKEY_LOCAL_MACHINE, +- r"SOFTWARE\ImageMagick\Current") as reg_key: +- libPath = winreg.QueryValueEx(reg_key, "LibPath") +- coderPath = winreg.QueryValueEx(reg_key, "CoderModulesPath") +- filterPath = winreg.QueryValueEx(reg_key, "FilterModulesPath") +- magick_home = libPath[0] +- os.environ['PATH'] += (';' + libPath[0] + ";" + +- coderPath[0] + ";" + filterPath[0]) +- except OSError: +- # otherwise use MAGICK_HOME, and we assume the coder and +- # filter DLLs are in the same directory +- pass +- +- def magick_path(path): +- return os.path.join(magick_home, *path) +- combinations = itertools.product(versions, options) +- for suffix in (version + option for version, option in combinations): +- # On Windows, the API is split between two libs. On other platforms, +- # it's all contained in one. +- if magick_home: +- if system == 'Windows': +- libwand = 'CORE_RL_wand_{0}.dll'.format(suffix), +- libmagick = 'CORE_RL_magick_{0}.dll'.format(suffix), +- yield magick_path(libwand), magick_path(libmagick) +- libwand = 'libMagickWand{0}.dll'.format(suffix), +- libmagick = 'libMagickCore{0}.dll'.format(suffix), +- yield magick_path(libwand), magick_path(libmagick) +- elif system == 'Darwin': +- libwand = 'lib', 'libMagickWand{0}.dylib'.format(suffix), +- yield magick_path(libwand), magick_path(libwand) +- else: +- libwand = 'lib', 'libMagickWand{0}.so'.format(suffix), +- yield magick_path(libwand), magick_path(libwand) +- if system == 'Windows': +- libwand = ctypes.util.find_library('CORE_RL_wand_' + suffix) +- libmagick = ctypes.util.find_library('CORE_RL_magick_' + suffix) +- yield libwand, libmagick +- libwand = ctypes.util.find_library('libMagickWand' + suffix) +- libmagick = ctypes.util.find_library('libMagickCore' + suffix) +- yield libwand, libmagick +- else: +- libwand = ctypes.util.find_library('MagickWand' + suffix) +- yield libwand, libwand +- +- +-def load_library(): +- """Loads the MagickWand library. +- +- :returns: the MagickWand library and the ImageMagick library +- :rtype: :class:`ctypes.CDLL` +- +- """ +- tried_paths = [] +- for libwand_path, libmagick_path in library_paths(): +- if libwand_path is None or libmagick_path is None: +- continue +- try: +- tried_paths.append(libwand_path) +- libwand = ctypes.CDLL(libwand_path) +- if libwand_path == libmagick_path: +- libmagick = libwand +- else: +- tried_paths.append(libmagick_path) +- libmagick = ctypes.CDLL(libmagick_path) +- except (IOError, OSError): +- continue +- return libwand, libmagick +- raise IOError('cannot find library; tried paths: ' + repr(tried_paths)) +- +- + if not hasattr(ctypes, 'c_ssize_t'): + if ctypes.sizeof(ctypes.c_uint) == ctypes.sizeof(ctypes.c_void_p): + ctypes.c_ssize_t = ctypes.c_int +@@ -176,43 +84,14 @@ class AffineMatrix(ctypes.Structure): + # Preserve the module itself even if it fails to import + sys.modules['wand._api'] = sys.modules['wand.api'] + +-try: +- libraries = load_library() +-except (OSError, IOError): +- msg = 'http://docs.wand-py.org/en/latest/guide/install.html' +- if sys.platform.startswith(('dragonfly', 'freebsd')): +- msg = 'pkg install' +- elif sys.platform == 'win32': +- msg += '#install-imagemagick-on-windows' +- elif sys.platform == 'darwin': +- mac_pkgmgrs = {'brew': 'brew install freetype imagemagick', +- 'port': 'port install imagemagick'} +- for pkgmgr in mac_pkgmgrs: +- with os.popen('which ' + pkgmgr) as f: +- if f.read().strip(): +- msg = mac_pkgmgrs[pkgmgr] +- break +- else: +- msg += '#install-imagemagick-on-mac' +- else: +- distname, _, __ = platform.linux_distribution() +- distname = (distname or '').lower() +- if distname in ('debian', 'ubuntu'): +- msg = 'apt-get install libmagickwand-dev' +- elif distname in ('fedora', 'centos', 'redhat'): +- msg = 'yum install ImageMagick-devel' +- raise ImportError('MagickWand shared library not found.\n' +- 'You probably had not installed ImageMagick library.\n' +- 'Try to install:\n ' + msg) +- + #: (:class:`ctypes.CDLL`) The MagickWand library. +-library = libraries[0] ++library = ctypes.CDLL("@magick_wand_library@") + + #: (:class:`ctypes.CDLL`) The ImageMagick library. It is the same with + #: :data:`library` on platforms other than Windows. + #: + #: .. versionadded:: 0.1.10 +-libmagick = libraries[1] ++libmagick = ctypes.CDLL("@imagemagick_library@") + + try: + library.MagickWandGenesis.argtypes = [] diff --git a/pkgs/development/python-modules/aenum/default.nix b/pkgs/development/python-modules/aenum/default.nix index 1233b94dccd..9d6fe94a262 100644 --- a/pkgs/development/python-modules/aenum/default.nix +++ b/pkgs/development/python-modules/aenum/default.nix @@ -1,18 +1,25 @@ -{ stdenv, fetchPypi, buildPythonPackage }: +{ stdenv, fetchPypi, buildPythonPackage, isPy3k }: buildPythonPackage rec { pname = "aenum"; - version = "1.4.7"; + version = "2.0.6"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "1bvn2k53nz99fiwql5fkl0fh7xjw8ama9qzdjp36609mpk05ikl8"; + sha256 = "0rlhb5wzlyyz0l44r2jxn3m0nh51ifih97dk2y7zfs1m299gwcv6"; }; + doCheck = !isPy3k; + # The following tests fail (only in python3 + # test_convert (aenum.test.TestIntEnumConvert) + # test_convert_value_lookup_priority (aenum.test.TestIntEnumConvert) + # test_convert (aenum.test.TestIntEnumConvert) + # test_convert_value_lookup_priority (aenum.test.TestIntEnumConvert) + meta = { description = "Advanced Enumerations (compatible with Python's stdlib Enum), NamedTuples, and NamedConstants"; - maintainer = with stdenv.lib.maintainers; [ vrthra ]; + maintainers = with stdenv.lib.maintainers; [ vrthra ]; license = with stdenv.lib.licenses; [ bsd3 ]; homepage = https://bitbucket.org/stoneleaf/aenum; }; diff --git a/pkgs/development/python-modules/agate-dbf/default.nix b/pkgs/development/python-modules/agate-dbf/default.nix new file mode 100644 index 00000000000..11409a11778 --- /dev/null +++ b/pkgs/development/python-modules/agate-dbf/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchPypi, buildPythonPackage, agate, dbf, dbfread }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "agate-dbf"; + version = "0.2.0"; + + propagatedBuildInputs = [ agate dbf dbfread ]; + + src = fetchPypi { + inherit pname version; + sha256 = "0pkk6m873xpqj77ja6ylmg8v41abpn4bvsqw6mh2hjyd0snw2rh6"; + }; + + meta = with stdenv.lib; { + description = "Adds read support for dbf files to agate"; + homepage = https://github.com/wireservice/agate-dbf; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/agate-excel/default.nix b/pkgs/development/python-modules/agate-excel/default.nix new file mode 100644 index 00000000000..cb0113c22b3 --- /dev/null +++ b/pkgs/development/python-modules/agate-excel/default.nix @@ -0,0 +1,22 @@ +{ stdenv, fetchPypi, buildPythonPackage, agate, openpyxl, xlrd }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "agate-excel"; + version = "0.2.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "1d28s01a0a8n8rdrd78w88cqgl3lawzy38h9afwm0iks618i0qn7"; + }; + + propagatedBuildInputs = [ agate openpyxl xlrd ]; + + meta = with stdenv.lib; { + description = "Adds read support for excel files to agate"; + homepage = "https://github.com/wireservice/agate-excel"; + license = licenses.mit; + maintainers = with maintainers; [ vrthra ]; + }; + +} diff --git a/pkgs/development/python-modules/agate-sql/default.nix b/pkgs/development/python-modules/agate-sql/default.nix new file mode 100644 index 00000000000..0167b40ea43 --- /dev/null +++ b/pkgs/development/python-modules/agate-sql/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchPypi, buildPythonPackage, agate, sqlalchemy }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "agate-sql"; + version = "0.5.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "0qlfwql6fnbs0r1rj7nxv4n5scad53b8dlh4qv6gyklvdk3wwn14"; + }; + + propagatedBuildInputs = [ agate sqlalchemy ]; + + meta = with stdenv.lib; { + description = "Adds SQL read/write support to agate."; + homepage = https://github.com/wireservice/agate-sql; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/agate/default.nix b/pkgs/development/python-modules/agate/default.nix new file mode 100644 index 00000000000..3ff097a78cf --- /dev/null +++ b/pkgs/development/python-modules/agate/default.nix @@ -0,0 +1,27 @@ +{ stdenv, fetchPypi, buildPythonPackage, isPy3k, + discid, six, parsedatetime, isodate, Babel, pytimeparse, + leather, python-slugify }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "agate"; + version = "1.6.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "02pb5jjvzjqfpsa7q12afbk9nqj06xdpw1s7qa6a1bnalikfniqm"; + }; + + propagatedBuildInputs = [ discid six parsedatetime + isodate Babel pytimeparse leather python-slugify ]; + + doCheck = !isPy3k; + # (only) on python3 unittest loader (loadTestsFromModule) fails + + meta = with stdenv.lib; { + description = "A Python data analysis library that is optimized for humans instead of machines"; + homepage = https://github.com/wireservice/agate; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/asgi_ipc/default.nix b/pkgs/development/python-modules/asgi_ipc/default.nix new file mode 100644 index 00000000000..9774433ddc5 --- /dev/null +++ b/pkgs/development/python-modules/asgi_ipc/default.nix @@ -0,0 +1,20 @@ +{ stdenv, buildPythonPackage, fetchurl, + asgiref, msgpack, posix_ipc +}: +buildPythonPackage rec { + name = "asgi_ipc-${version}"; + version = "1.3.1"; + + src = fetchurl { + url = "mirror://pypi/a/asgi_ipc/${name}.tar.gz"; + sha256 = "1dm8xvm1z28f421ck1ympxsq2sjm9xb7dla6p8yd2bz6gn6p5h7v"; + }; + + propagatedBuildInputs = [ asgiref msgpack posix_ipc ]; + + meta = with stdenv.lib; { + description = "Posix IPC-backed ASGI channel layer implementation"; + license = licenses.bsd3; + homepage = http://github.com/django/asgi_ipc/; + }; +} diff --git a/pkgs/development/python-modules/asgi_redis/default.nix b/pkgs/development/python-modules/asgi_redis/default.nix new file mode 100644 index 00000000000..5576fc0e68b --- /dev/null +++ b/pkgs/development/python-modules/asgi_redis/default.nix @@ -0,0 +1,23 @@ +{ stdenv, buildPythonPackage, fetchurl, + asgiref, asgi_ipc, msgpack, six, redis, cryptography +}: +buildPythonPackage rec { + name = "asgi_redis-${version}"; + version = "1.3.0"; + + src = fetchurl { + url = "mirror://pypi/a/asgi_redis/${name}.tar.gz"; + sha256 = "0zhv51w0fx3i8m0032nk9v00l6mxaswyi95yzy7p7fjww4q74ncl"; + }; + + # Requires a redis server available + doCheck = false; + + propagatedBuildInputs = [ asgiref asgi_ipc msgpack six redis cryptography ]; + + meta = with stdenv.lib; { + description = "Redis-backed ASGI channel layer implementation"; + license = licenses.bsd3; + homepage = http://github.com/django/asgi_redis/; + }; +} diff --git a/pkgs/development/python-modules/asgiref/default.nix b/pkgs/development/python-modules/asgiref/default.nix new file mode 100644 index 00000000000..1bd3ef19f7e --- /dev/null +++ b/pkgs/development/python-modules/asgiref/default.nix @@ -0,0 +1,18 @@ +{ stdenv, buildPythonPackage, fetchurl, six }: +buildPythonPackage rec { + name = "asgiref-${version}"; + version = "1.1.1"; + + src = fetchurl { + url = "mirror://pypi/a/asgiref/${name}.tar.gz"; + sha256 = "0gayxnysknwg8hxb5kvmi2mmd5dnrhgza23daf8j25w3nj2drars"; + }; + + propagatedBuildInputs = [ six ]; + + meta = with stdenv.lib; { + description = "Reference ASGI adapters and channel layers"; + license = licenses.bsd3; + homepage = https://github.com/django/asgiref; + }; +} diff --git a/pkgs/development/python-modules/asn1crypto/default.nix b/pkgs/development/python-modules/asn1crypto/default.nix new file mode 100644 index 00000000000..a34879e5596 --- /dev/null +++ b/pkgs/development/python-modules/asn1crypto/default.nix @@ -0,0 +1,24 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "asn1crypto"; + version = "0.22.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "cbbadd640d3165ab24b06ef25d1dca09a3441611ac15f6a6b452474fdf0aed1a"; + }; + + # No tests included + doCheck = false; + + meta = { + description = "Fast ASN.1 parser and serializer with definitions for private keys, public keys, certificates, CRL, OCSP, CMS, PKCS#3, PKCS#7, PKCS#8, PKCS#12, PKCS#5, X.509 and TSP"; + license = lib.licenses.mit; + homepage = https://github.com/wbond/asn1crypto; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/astroid/default.nix b/pkgs/development/python-modules/astroid/default.nix index 76f58e695f2..a690399118d 100644 --- a/pkgs/development/python-modules/astroid/default.nix +++ b/pkgs/development/python-modules/astroid/default.nix @@ -28,7 +28,7 @@ description = "A abstract syntax tree for Python with inference support"; homepage = http://bitbucket.org/logilab/astroid; license = licenses.lgpl2; - platform = platforms.all; + platforms = platforms.all; maintainers = with maintainers; [ nand0p ]; }; } diff --git a/pkgs/development/python-modules/autobahn/default.nix b/pkgs/development/python-modules/autobahn/default.nix new file mode 100644 index 00000000000..b83d731c720 --- /dev/null +++ b/pkgs/development/python-modules/autobahn/default.nix @@ -0,0 +1,35 @@ +{ stdenv, buildPythonPackage, fetchurl, isPy3k, isPy33, + unittest2, mock, pytest, trollius, asyncio, + pytest-asyncio, futures, + six, twisted, txaio, zope_interface +}: +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "autobahn"; + version = "17.5.1"; + + src = fetchurl { + url = "mirror://pypi/a/${pname}/${name}.tar.gz"; + sha256 = "0p2xx20g0rj6pnp4h3231mn8zk4ag8msv69f93gai2hzl5vglcia"; + }; + + # Upstream claim python2 support, but tests require pytest-asyncio which + # is pythn3 only. Therefore, tests are skipped for python2. + doCheck = isPy3k; + buildInputs = stdenv.lib.optionals isPy3k [ unittest2 mock pytest pytest-asyncio ]; + propagatedBuildInputs = [ six twisted zope_interface txaio ] ++ + (stdenv.lib.optional isPy33 asyncio) ++ + (stdenv.lib.optionals (!isPy3k) [ trollius futures ]); + + checkPhase = '' + py.test $out + ''; + + meta = with stdenv.lib; { + description = "WebSocket and WAMP in Python for Twisted and asyncio."; + homepage = "http://crossbar.io/autobahn"; + license = licenses.mit; + maintainers = with maintainers; [ nand0p ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/python-modules/automat/default.nix b/pkgs/development/python-modules/automat/default.nix new file mode 100644 index 00000000000..146f47bd945 --- /dev/null +++ b/pkgs/development/python-modules/automat/default.nix @@ -0,0 +1,25 @@ +{ stdenv, buildPythonPackage, fetchurl, + m2r, setuptools_scm, six, attrs }: +buildPythonPackage rec { + name = "Automat-${version}"; + version = "0.5.0"; + + src = fetchurl { + url = "mirror://pypi/A/Automat/${name}.tar.gz"; + sha256 = "1hnpknkqnc2m900kkzrzx9l6g5dy5dassrdj9pn34x1pcdkyr2a8"; + }; + + buildInputs = [ m2r setuptools_scm ]; + propagatedBuildInputs = [ six attrs ]; + + # Some tests require twisetd, but twisted requires Automat to build. + # this creates a circular dependency. + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/glyph/Automat; + description = "Self-service finite-state machines for the programmer on the go"; + license = licenses.mit; + maintainers = [ ]; + }; +} diff --git a/pkgs/development/python-modules/bcrypt.nix b/pkgs/development/python-modules/bcrypt.nix index 94f04880c8e..8a099983521 100644 --- a/pkgs/development/python-modules/bcrypt.nix +++ b/pkgs/development/python-modules/bcrypt.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, isPyPy, fetchurl -, cffi, pycparser, mock, pytest, py }: +, cffi, pycparser, mock, pytest, py, six }: with stdenv.lib; @@ -12,7 +12,7 @@ buildPythonPackage rec { sha256 = "1al54xafv1aharpb22yv5rjjc63fm60z3pn2shbiq48ah9f1fvil"; }; buildInputs = [ pycparser mock pytest py ]; - propagatedBuildInputs = optional (!isPyPy) cffi; + propagatedBuildInputs = [ six ] ++ optional (!isPyPy) cffi; meta = { maintainers = with maintainers; [ domenkozar ]; diff --git a/pkgs/development/python-modules/bibtexparser/default.nix b/pkgs/development/python-modules/bibtexparser/default.nix new file mode 100644 index 00000000000..0f624a145e0 --- /dev/null +++ b/pkgs/development/python-modules/bibtexparser/default.nix @@ -0,0 +1,25 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "bibtexparser"; + version = "0.6.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "5888219ac5db1c63ae0ad4db52ec7ad87fe7a32bd60e62ee87bceedb8ebf73b8"; + }; + + # No tests in archive + doCheck = false; + + meta = { + description = "Bibtex parser for python 2.7 and 3.3 and newer"; + homepage = https://github.com/sciunto-org/python-bibtexparser; + license = with lib.licenses; [ gpl3 bsd3 ]; + maintainer = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/branca/default.nix b/pkgs/development/python-modules/branca/default.nix new file mode 100644 index 00000000000..886433a358a --- /dev/null +++ b/pkgs/development/python-modules/branca/default.nix @@ -0,0 +1,30 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, jinja2 +, selenium +}: + +buildPythonPackage rec { + pname = "branca"; + version = "0.2.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "327b0bae73a519f25dc2f320d8d9f1885aad2e8e5105add1496269d5391b8ea4"; + }; + + checkInputs = [ pytest selenium ]; + propagatedBuildInputs = [ jinja2 ]; + + # Seems to require a browser + doCheck = false; + + meta = { + description = "Generate complex HTML+JS pages with Python"; + homepage = https://github.com/python-visualization/branca; + license = with lib.licenses; [ mit ]; + }; +} diff --git a/pkgs/development/python-modules/certifi/default.nix b/pkgs/development/python-modules/certifi/default.nix new file mode 100644 index 00000000000..8658c76df79 --- /dev/null +++ b/pkgs/development/python-modules/certifi/default.nix @@ -0,0 +1,22 @@ +{ lib +, fetchPypi +, buildPythonPackage +}: + +buildPythonPackage rec { + pname = "certifi"; + version = "2017.1.23"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1klrzl3hgvcf2mjk00g0k3kk1p2z27vzwnxivwar4vhjmjvpz1w1"; + }; + + meta = { + homepage = http://certifi.io/; + description = "Python package for providing Mozilla's CA Bundle"; + license = lib.licenses.isc; + maintainers = with lib.maintainers; [ koral ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/cffi/default.nix b/pkgs/development/python-modules/cffi/default.nix new file mode 100644 index 00000000000..55bd8deef9a --- /dev/null +++ b/pkgs/development/python-modules/cffi/default.nix @@ -0,0 +1,30 @@ +{ lib, buildPythonPackage, isPyPy, fetchPypi, libffi, pycparser, pytest }: + +if isPyPy then null else buildPythonPackage rec { + pname = "cffi"; + version = "1.10.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1mffyilq4qycm8gs4wkgb18rnqil8a9blqq77chdlshzxc8jkc5k"; + }; + + propagatedBuildInputs = [ libffi pycparser ]; + buildInputs = [ pytest ]; + + patchPhase = '' + substituteInPlace testing/cffi0/test_ownlib.py --replace "gcc" "cc" + ''; + + checkPhase = '' + py.test + ''; + + meta = with lib; { + maintainers = with maintainers; [ domenkozar ]; + homepage = https://cffi.readthedocs.org/; + license = with licenses; [ mit ]; + description = "Foreign Function Interface for Python calling C code"; + }; +} diff --git a/pkgs/development/python-modules/channels/default.nix b/pkgs/development/python-modules/channels/default.nix index c7466d242c7..a589369210d 100644 --- a/pkgs/development/python-modules/channels/default.nix +++ b/pkgs/development/python-modules/channels/default.nix @@ -3,11 +3,11 @@ }: buildPythonPackage rec { name = "channels-${version}"; - version = "1.0.3"; + version = "1.1.3"; src = fetchurl { url = "mirror://pypi/c/channels/${name}.tar.gz"; - sha256 = "1bwlqnfc27p1qnjmdl8jnr941gpl8ggnxxfy8anh9qgmg20q9pfd"; + sha256 = "182war437i6wsxwf2v4szn8ig0nkpinpn4n27fxhh5q8w832hj93"; }; # Files are missing in the distribution diff --git a/pkgs/development/python-modules/confluent-kafka/default.nix b/pkgs/development/python-modules/confluent-kafka/default.nix new file mode 100644 index 00000000000..bd5d8b7dca6 --- /dev/null +++ b/pkgs/development/python-modules/confluent-kafka/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi, isPy3k, rdkafka, requests, avro3k, avro}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + version = "0.9.4"; + pname = "confluent-kafka"; + + src = fetchPypi { + inherit pname version; + sha256 = "1v8apw9f8l01ql42jg1sfqv41yxvcbxn1a3ar01y0ni428swq6wk"; + }; + + buildInputs = [ rdkafka requests ] ++ (if isPy3k then [ avro3k ] else [ avro ]) ; + + # Tests fail for python3 under this pypi release + doCheck = if isPy3k then false else true; + + meta = with stdenv.lib; { + description = "Confluent's Apache Kafka client for Python"; + homepage = "https://github.com/confluentinc/confluent-kafka-python"; + license = licenses.asl20; + maintainers = with maintainers; [ mlieberman85 ]; + }; +} diff --git a/pkgs/development/python-modules/constantly/default.nix b/pkgs/development/python-modules/constantly/default.nix new file mode 100644 index 00000000000..44fbeb6d39f --- /dev/null +++ b/pkgs/development/python-modules/constantly/default.nix @@ -0,0 +1,18 @@ +{ stdenv, buildPythonPackage, fetchurl +}: +buildPythonPackage rec { + name = "constantly-${version}"; + version = "15.1.0"; + + src = fetchurl { + url = "mirror://pypi/c/constantly/${name}.tar.gz"; + sha256 = "0dgwdla5kfpqz83hfril716inm41hgn9skxskvi77605jbmp4qsq"; + }; + + meta = with stdenv.lib; { + homepage = https://github.com/twisted/constantly; + description = "symbolic constant support"; + license = licenses.mit; + maintainers = [ ]; + }; +} diff --git a/pkgs/development/python-modules/coveralls/default.nix b/pkgs/development/python-modules/coveralls/default.nix new file mode 100644 index 00000000000..57431c2c2c2 --- /dev/null +++ b/pkgs/development/python-modules/coveralls/default.nix @@ -0,0 +1,51 @@ +{ buildPythonPackage +, lib +, fetchPypi +, mock +, pytest_27 +, sh +, coverage +, docopt +, requests +, git +}: + +buildPythonPackage rec { + pname = "coveralls"; + name = "${pname}-python-${version}"; + version = "1.1"; + + # wanted by tests + src = fetchPypi { + inherit pname version; + sha256 = "0238hgdwbvriqxrj22zwh0rbxnhh9c6hh75i39ll631vq62h65il"; + }; + + buildInputs = [ + mock + sh + pytest_27 + git + ]; + + # FIXME: tests requires .git directory to be present + doCheck = false; + + checkPhase = '' + python setup.py test + ''; + + propagatedBuildInputs = [ + coverage + docopt + requests + ]; + + meta = { + description = "Show coverage stats online via coveralls.io"; + homepage = https://github.com/coveralls-clients/coveralls-python; + license = lib.licenses.mit; + }; +} + + diff --git a/pkgs/development/python-modules/cram/default.nix b/pkgs/development/python-modules/cram/default.nix new file mode 100644 index 00000000000..4db709769a6 --- /dev/null +++ b/pkgs/development/python-modules/cram/default.nix @@ -0,0 +1,40 @@ +{stdenv, lib, buildPythonPackage, fetchPypi, coverage, bash, which, writeText}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + version = "0.7"; + pname = "cram"; + + buildInputs = [ coverage which ]; + + src = fetchPypi { + inherit pname version; + sha256 = "0bvz6fwdi55rkrz3f50zsy35gvvwhlppki2yml5bj5ffy9d499vx"; + }; + + postPatch = '' + substituteInPlace tests/test.t \ + --replace "/bin/bash" "${bash}/bin/bash" + ''; + + # This testing is copied from Makefile. Simply using `make test` doesn't work + # because it uses the unpatched `scripts/cram` executable which has a bad + # shebang. Also, for some reason, coverage fails on one file so let's just + # ignore that one. + checkPhase = '' + # scripts/cram tests + #COVERAGE=${coverage}/bin/coverage $out/bin/cram tests + #${coverage}/bin/coverage report --fail-under=100 + COVERAGE=coverage $out/bin/cram tests + coverage report --fail-under=100 --omit="*/_encoding.py" + ''; + + meta = { + description = "A simple testing framework for command line applications"; + homepage = https://bitheap.org/cram/; + license = lib.licenses.gpl2Plus; + maintainers = with lib.maintainers; [ jluttine ]; + # Tests fail on i686: https://hydra.nixos.org/build/52896671/nixlog/4 + broken = stdenv.isi686; + }; +} diff --git a/pkgs/development/python-modules/csvkit/default.nix b/pkgs/development/python-modules/csvkit/default.nix new file mode 100644 index 00000000000..bfabf4376e7 --- /dev/null +++ b/pkgs/development/python-modules/csvkit/default.nix @@ -0,0 +1,28 @@ +{ stdenv, fetchPypi, buildPythonPackage, + dateutil, dbf, xlrd, sqlalchemy, openpyxl, + agate-excel, agate-dbf, agate-sql, isPy3k }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "csvkit"; + version = "1.0.2"; + + src = fetchPypi { + inherit pname version; + sha256 = "05vfsba9nwh4islszgs18rq8sjkpzqni0cdwvvkw7pi0r63pz2as"; + }; + + propagatedBuildInputs = [ dateutil dbf xlrd sqlalchemy openpyxl + agate-excel agate-dbf agate-sql ]; + + doCheck = !isPy3k; + # (only) python 3 we had 9 failures and 57 errors out of a much larger + # number of tests. + + meta = with stdenv.lib; { + description = "A library of utilities for working with CSV, the king of tabular file formats"; + maintainers = with maintainers; [ vrthra ]; + license = with licenses; [ mit ]; + homepage = https://github.com/wireservice/csvkit; + }; +} diff --git a/pkgs/development/python-modules/daphne/default.nix b/pkgs/development/python-modules/daphne/default.nix index 6e19d9d9e86..34cc597ede9 100644 --- a/pkgs/development/python-modules/daphne/default.nix +++ b/pkgs/development/python-modules/daphne/default.nix @@ -1,15 +1,16 @@ { stdenv, buildPythonPackage, fetchurl, - asgiref, autobahn, twisted + asgiref, autobahn, twisted, hypothesis }: buildPythonPackage rec { name = "daphne-${version}"; - version = "1.0.3"; + version = "1.2.0"; src = fetchurl { url = "mirror://pypi/d/daphne/${name}.tar.gz"; - sha256 = "1bpavq3sxr66mqwnnfg67pcchyaq7siqyin2r89aqadf6nab58d2"; + sha256 = "084216isw7rwy693i62rbd8kvpqx418jvf1q72cplv833wz3in7l"; }; + buildInputs = [ hypothesis ]; propagatedBuildInputs = [ asgiref autobahn twisted ]; meta = with stdenv.lib; { diff --git a/pkgs/development/python-modules/dbf/default.nix b/pkgs/development/python-modules/dbf/default.nix new file mode 100644 index 00000000000..2343ea2918b --- /dev/null +++ b/pkgs/development/python-modules/dbf/default.nix @@ -0,0 +1,25 @@ +{ stdenv, fetchPypi, buildPythonPackage, aenum, isPy3k }: + +buildPythonPackage rec { + pname = "dbf"; + version = "0.96.8"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1z8n7s4cka6x9ybh4qpfhj51v2qrk38h2f06npizzhm0hmn6r3v1"; + }; + + propagatedBuildInputs = [ aenum ]; + + doCheck = !isPy3k; + # tests are not yet ported. + # https://groups.google.com/forum/#!topic/python-dbase/96rx2xmCG4w + + meta = with stdenv.lib; { + description = "Pure python package for reading/writing dBase, FoxPro, and Visual FoxPro .dbf files"; + homepage = "https://pypi.python.org/pypi/dbf"; + license = licenses.bsd2; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/dbfread/default.nix b/pkgs/development/python-modules/dbfread/default.nix new file mode 100644 index 00000000000..6bbc4775605 --- /dev/null +++ b/pkgs/development/python-modules/dbfread/default.nix @@ -0,0 +1,19 @@ +{ stdenv, fetchPypi, buildPythonPackage }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "dbfread"; + version = "2.0.5"; + + src = fetchPypi { + inherit pname version; + sha256 = "0r5axq9ax0czyapm7b69krcv22r1nyb4vci7c5x8mx8pq1axim93"; + }; + + meta = with stdenv.lib; { + description = "Read DBF Files with Python"; + homepage = http://dbfread.readthedocs.org/; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/django-compat/default.nix b/pkgs/development/python-modules/django-compat/default.nix new file mode 100644 index 00000000000..d8a314750ca --- /dev/null +++ b/pkgs/development/python-modules/django-compat/default.nix @@ -0,0 +1,23 @@ +{ stdenv, buildPythonPackage, fetchurl, + django, django_nose, six +}: +buildPythonPackage rec { + name = "django-compat-${version}"; + version = "1.0.14"; + + src = fetchurl { + url = "mirror://pypi/d/django-compat/${name}.tar.gz"; + sha256 = "18y5bxxmafcd4np42mzbalva5lpssq0b8ki7zckbzvdv2mnv43xj"; + }; + + doCheck = false; + + buildInputs = [ django_nose ]; + propagatedBuildInputs = [ django six ]; + + meta = with stdenv.lib; { + description = "Forward and backwards compatibility layer for Django 1.4, 1.7, 1.8, 1.9, 1.10 and 1.11"; + homepage = https://github.com/arteria/django-compat; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/django/1_11.nix b/pkgs/development/python-modules/django/1_11.nix new file mode 100644 index 00000000000..01d9992220f --- /dev/null +++ b/pkgs/development/python-modules/django/1_11.nix @@ -0,0 +1,37 @@ +{ stdenv, buildPythonPackage, fetchurl, substituteAll, + pythonOlder, + geos, gdal, pytz +}: +buildPythonPackage rec { + name = "Django-${version}"; + version = "1.11.1"; + disabled = pythonOlder "2.7"; + + src = fetchurl { + url = "http://www.djangoproject.com/m/releases/1.11/${name}.tar.gz"; + sha256 = "131swdygapgrnkicvksqf904gkrfvljcrsqq8z82rvzf4bwgvkmv"; + }; + + patches = [ + (substituteAll { + src = ./1.10-gis-libs.template.patch; + geos = geos; + gdal = gdal; + }) + ]; + + # patch only $out/bin to avoid problems with starter templates (see #3134) + postFixup = '' + wrapPythonProgramsIn $out/bin "$out $pythonPath" + ''; + + propagatedBuildInputs = [ pytz ]; + + # too complicated to setup + doCheck = false; + + meta = { + description = "A high-level Python Web framework"; + homepage = https://www.djangoproject.com/; + }; +} diff --git a/pkgs/development/python-modules/django_guardian.nix b/pkgs/development/python-modules/django_guardian.nix index 1b31456162b..aee9707a523 100644 --- a/pkgs/development/python-modules/django_guardian.nix +++ b/pkgs/development/python-modules/django_guardian.nix @@ -4,11 +4,11 @@ }: buildPythonPackage rec { name = "django-guardian-${version}"; - version = "1.4.6"; + version = "1.4.8"; src = fetchurl { url = "mirror://pypi/d/django-guardian/${name}.tar.gz"; - sha256 = "1r3xj0ik0hh6dfak4kjndxk5v73x95nfbppgr394nhnmiayv4zc5"; + sha256 = "039mfx47c05vl6vlld0ahyq37z7m5g68vqc38pj8iic5ysr98drm"; }; buildInputs = [ pytest pytestrunner pytest-django django_environ mock setuptools_scm ]; diff --git a/pkgs/development/python-modules/dkimpy/default.nix b/pkgs/development/python-modules/dkimpy/default.nix new file mode 100644 index 00000000000..df768f5d122 --- /dev/null +++ b/pkgs/development/python-modules/dkimpy/default.nix @@ -0,0 +1,44 @@ +{ stdenv, fetchurl, openssl, makeWrapper, buildPythonApplication +, pytest, dns }: + +buildPythonApplication rec { + name = "${pname}-${majorversion}.${minorversion}"; + pname = "dkimpy"; + majorversion = "0.6"; + minorversion = "1"; + + src = fetchurl { + url = "https://launchpad.net/${pname}/${majorversion}/${majorversion}.${minorversion}/+download/${name}.tar.gz"; + sha256 = "0zmvyw18ww1jqrbqws636w3xki59fyqva553r6s74q5c4jvy36v2"; + }; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [ openssl dns ]; + + patchPhase = ''substituteInPlace dknewkey.py --replace \ + /usr/bin/openssl ${openssl}/bin/openssl + ''; + + postInstall = '' + mkdir -p $out/bin $out/libexec + mv $out/bin/*.py $out/libexec + makeWrapper "$out/libexec/dkimverify.py" $out/bin/dkimverify + makeWrapper "$out/libexec/dkimsign.py" $out/bin/dkimsign + makeWrapper "$out/libexec/arcverify.py" $out/bin/arcverify + makeWrapper "$out/libexec/arcsign.py" $out/bin/arcsign + makeWrapper "$out/libexec/dknewkey.py" $out/bin/dknewkey + ''; + + meta = with stdenv.lib; { + description = "DKIM + ARC email signing/verification tools + Python module"; + longDescription = ''Python module that implements DKIM (DomainKeys Identified Mail) + email signing and verification. It also provides a number of convєnient tools + for command line signing and verification, as well as generating new DKIM records. + This version also supports the experimental Authenticated Received Chain (ARC) + protocol. + ''; + homepage = "https://launchpad.net/dkimpy"; + license = licenses.bsd3; + maintainers = with maintainers; [ leenaars ]; + }; +} diff --git a/pkgs/development/python-modules/docker.nix b/pkgs/development/python-modules/docker.nix index 12c9aac4c23..84c7b5ff38b 100644 --- a/pkgs/development/python-modules/docker.nix +++ b/pkgs/development/python-modules/docker.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchurl -, six, requests2, websocket_client +, six, requests, websocket_client , ipaddress, backports_ssl_match_hostname, docker_pycreds }: buildPythonPackage rec { @@ -13,7 +13,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ six - requests2 + requests websocket_client ipaddress backports_ssl_match_hostname diff --git a/pkgs/development/python-modules/docker_compose.nix b/pkgs/development/python-modules/docker_compose.nix index c21b69e1643..9af95f72598 100644 --- a/pkgs/development/python-modules/docker_compose.nix +++ b/pkgs/development/python-modules/docker_compose.nix @@ -1,7 +1,7 @@ { stdenv, buildPythonApplication, fetchurl, pythonOlder , mock, pytest, nose , pyyaml, backports_ssl_match_hostname, colorama, docopt -, dockerpty, docker, ipaddress, jsonschema, requests2 +, dockerpty, docker, ipaddress, jsonschema, requests , six, texttable, websocket_client, cached-property , enum34, functools32 }: @@ -19,7 +19,7 @@ buildPythonApplication rec { buildInputs = [ mock pytest nose ]; propagatedBuildInputs = [ pyyaml backports_ssl_match_hostname colorama dockerpty docker - ipaddress jsonschema requests2 six texttable websocket_client + ipaddress jsonschema requests six texttable websocket_client docopt cached-property ] ++ stdenv.lib.optional (pythonOlder "3.4") enum34 ++ diff --git a/pkgs/development/python-modules/dogpile.cache/default.nix b/pkgs/development/python-modules/dogpile.cache/default.nix new file mode 100644 index 00000000000..de6efe40af7 --- /dev/null +++ b/pkgs/development/python-modules/dogpile.cache/default.nix @@ -0,0 +1,30 @@ +{ stdenv, buildPythonPackage, fetchPypi +, dogpile_core, pytest, pytestcov, mock, Mako +}: + +buildPythonPackage rec { + pname = "dogpile.cache"; + version = "0.6.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "73793471af07af6dc5b3ee015abfaca4220caaa34c615537f5ab007ed150726d"; + }; + + # Disable concurrency tests that often fail, + # probably some kind of timing issue. + prePatch = '' + rm tests/test_lock.py + ''; + + propagatedBuildInputs = [ dogpile_core ]; + buildInputs = [ pytest pytestcov mock Mako ]; + + meta = with stdenv.lib; { + description = "A caching front-end based on the Dogpile lock"; + homepage = http://bitbucket.org/zzzeek/dogpile.cache; + platforms = platforms.unix; + license = licenses.bsd3; + }; +} diff --git a/pkgs/development/python-modules/ezdxf/default.nix b/pkgs/development/python-modules/ezdxf/default.nix new file mode 100644 index 00000000000..c6c6137a2d4 --- /dev/null +++ b/pkgs/development/python-modules/ezdxf/default.nix @@ -0,0 +1,26 @@ +{ stdenv, buildPythonPackage, fetchFromGitHub, pyparsing, pytest }: + +buildPythonPackage rec { + version = "0.8.1"; + name = "ezdxf-${version}"; + + src = fetchFromGitHub { + owner = "mozman"; + repo = "ezdxf"; + rev = "v${version}"; + sha256 = "1c20j96n3rsgzaakfjl0wnydaj2qr69gbnnjs6mfa1hz2fjqri22"; + }; + + buildInputs = [ pytest ]; + checkPhase = "python -m unittest discover -s tests"; + + propagatedBuildInputs = [ pyparsing ]; + + meta = with stdenv.lib; { + description = "Python package to read and write DXF drawings (interface to the DXF file format)"; + homepage = https://github.com/mozman/ezdxf/; + license = licenses.mit; + maintainers = with maintainers; [ hodapp ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/python-modules/flask-restplus/0.8.nix b/pkgs/development/python-modules/flask-restplus/0.8.nix new file mode 100644 index 00000000000..bd586aeb32f --- /dev/null +++ b/pkgs/development/python-modules/flask-restplus/0.8.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, blinker +, tzlocal +, mock +, rednose +, flask +, six +, jsonschema +, pytz +, aniso8601 +, flask-restful +}: + +buildPythonPackage rec { + pname = "flask-restplus"; + version = "0.8.6"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "3bb76cc156b9a09da62396d82b29fa31e4f27cccf79528538fe7155cf2785593"; + }; + + checkInputs = [ nose blinker tzlocal mock rednose ]; + propagatedBuildInputs = [ flask six jsonschema pytz aniso8601 flask-restful ]; + + # RuntimeError: Working outside of application context. + doCheck = false; + + checkPhase = '' + nosetests + ''; + + meta = { + homepage = "https://github.com/noirbizarre/flask-restplus"; + description = "Fast, easy and documented API development with Flask"; + license = lib.licenses.mit; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/folium/default.nix b/pkgs/development/python-modules/folium/default.nix new file mode 100644 index 00000000000..387da64219d --- /dev/null +++ b/pkgs/development/python-modules/folium/default.nix @@ -0,0 +1,45 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, numpy +, nbconvert +, pandas +, mock +, jinja2 +, branca +, six +}: + +buildPythonPackage rec { + pname = "folium"; + version = "0.3.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "7729ddd6766b9c5dab17b3709e2387935fd5c655872f1cbab7b7036474415217"; + }; + + postPatch = '' + # Causes trouble because a certain file cannot be found + rm tests/notebooks/test_notebooks.py + ''; + + checkInputs = [ pytest numpy nbconvert pandas mock ]; + propagatedBuildInputs = [ jinja2 branca six ]; + + # +# doCheck = false; + +# checkPhase = '' +# py.test -k 'not test_notebooks' +# ''; + + meta = { + description = "Make beautiful maps with Leaflet.js & Python"; + homepage = https://github.com/python-visualization/folium; + license = with lib.licenses; [ mit ]; + maintainers = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/guessit/default.nix b/pkgs/development/python-modules/guessit/default.nix new file mode 100644 index 00000000000..7cf051b89a6 --- /dev/null +++ b/pkgs/development/python-modules/guessit/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytestrunner +, dateutil +, babelfish +, rebulk +}: + +buildPythonPackage rec { + pname = "guessit"; + version = "2.1.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "9f7e12b7f2215548284631a20aae6fc009c8af2bb8cc5d5e5e339cb15361dd95"; + }; + + # Tests require more packages. + doCheck = false; + buildInputs = [ pytestrunner ]; + propagatedBuildInputs = [ + dateutil babelfish rebulk + ]; + + meta = { + homepage = http://pypi.python.org/pypi/guessit; + license = lib.licenses.lgpl3; + description = "A library for guessing information from video files"; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/httpbin/default.nix b/pkgs/development/python-modules/httpbin/default.nix new file mode 100644 index 00000000000..72917fdd771 --- /dev/null +++ b/pkgs/development/python-modules/httpbin/default.nix @@ -0,0 +1,27 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +, flask +, markupsafe +, decorator +, itsdangerous +, six }: + +buildPythonPackage rec { + pname = "httpbin"; + version = "0.5.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "6b57f563900ecfe126015223a259463848daafbdc2687442317c0992773b9054"; + }; + + propagatedBuildInputs = [ flask markupsafe decorator itsdangerous six ]; + + meta = with stdenv.lib; { + homepage = https://github.com/kennethreitz/httpbin; + description = "HTTP Request & Response Service"; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/httpserver/default.nix b/pkgs/development/python-modules/httpserver/default.nix new file mode 100644 index 00000000000..0e4ae14acd7 --- /dev/null +++ b/pkgs/development/python-modules/httpserver/default.nix @@ -0,0 +1,27 @@ +{ lib, fetchPypi, buildPythonPackage, docopt, pythonOlder }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "httpserver"; + version = "1.1.0"; + + buildInputs = [ docopt ]; + + # Tests pull in lots of other dependencies to emulate different web + # drivers. + doCheck = false; + + # Because it uses asyncio + disabled = pythonOlder "3.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "1q62g324dvb0hqdwwrnj41sqr4d3ly78v9nc26rz1whj4pwdmhsv"; + }; + + meta = { + description = "Asyncio implementation of an HTTP server"; + homepage = https://github.com/thomwiggers/httpserver; + license = with lib.licenses; [ bsd3 ]; + }; +} diff --git a/pkgs/development/python-modules/hypothesis.nix b/pkgs/development/python-modules/hypothesis.nix index 271251b830e..d5251f1fa55 100644 --- a/pkgs/development/python-modules/hypothesis.nix +++ b/pkgs/development/python-modules/hypothesis.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { # If you need these, you can just add them to your environment. name = "hypothesis-${version}"; - version = "3.6.1"; + version = "3.7.0"; # Upstream prefers github tarballs src = fetchFromGitHub { owner = "HypothesisWorks"; repo = "hypothesis"; rev = "${version}"; - sha256 = "1zwr9g4h4jizbvm2d7fywdpcxmw8i1m85h8g72kizah07gk12aq1"; + sha256 = "1zsv1ggf3g9rrigxl3zd1z8qc6fcj8lmszm8ib1ya4ar6r64x0yz"; }; buildInputs = stdenv.lib.optionals doCheck [ pytest flake8 flaky ]; diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix new file mode 100644 index 00000000000..a77f6ac9c2f --- /dev/null +++ b/pkgs/development/python-modules/ipykernel/default.nix @@ -0,0 +1,43 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, isPy27 +, mock +, ipython +, jupyter_client +, pexpect +, traitlets +, tornado +}: + +buildPythonPackage rec { + pname = "ipykernel"; + version = "4.6.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "2e1825aca4e2585b5adb7953ea16e53f53a62159ed49952a564b1e23507205db"; + }; + + buildInputs = [ nose ] ++ lib.optional isPy27 mock; + propagatedBuildInputs = [ + ipython + jupyter_client + pexpect + traitlets + tornado + ]; + + # Tests require backends. + # I don't want to add all supported backends as propagatedBuildInputs + doCheck = false; + + meta = { + description = "IPython Kernel for Jupyter"; + homepage = http://ipython.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/ipyparallel/default.nix b/pkgs/development/python-modules/ipyparallel/default.nix new file mode 100644 index 00000000000..3e8ea048920 --- /dev/null +++ b/pkgs/development/python-modules/ipyparallel/default.nix @@ -0,0 +1,41 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, dateutil +, ipython_genutils +, decorator +, pyzmq +, ipython +, jupyter_client +, ipykernel +, tornado +, isPy3k +, futures +}: + +buildPythonPackage rec { + pname = "ipyparallel"; + version = "6.0.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "7eea4780266252fcc987b220a302d589fbb4d6b0569bd131115a20b31891103d"; + }; + + buildInputs = [ nose ]; + + propagatedBuildInputs = [ dateutil ipython_genutils decorator pyzmq ipython jupyter_client ipykernel tornado + ] ++ lib.optionals (!isPy3k) [ futures ]; + + # Requires access to cluster + doCheck = false; + + meta = { + description = "Interactive Parallel Computing with IPython"; + homepage = http://ipython.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/ipython/5.nix b/pkgs/development/python-modules/ipython/5.nix new file mode 100644 index 00000000000..b25039cc71e --- /dev/null +++ b/pkgs/development/python-modules/ipython/5.nix @@ -0,0 +1,65 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchPypi +, pythonOlder +# Build dependencies +, glibcLocales +# Test dependencies +, nose +, pygments +, testpath +, isPy27 +, mock +# Runtime dependencies +, backports_shutil_get_terminal_size +, jedi +, decorator +, pathlib2 +, pickleshare +, requests +, simplegeneric +, traitlets +, prompt_toolkit +, pexpect +, appnope +}: + +buildPythonPackage rec { + pname = "ipython"; + version = "5.3.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "bf5e615e7d96dac5a61fbf98d9e2926d98aa55582681bea7e9382992a3f43c1d"; + }; + + prePatch = stdenv.lib.optionalString stdenv.isDarwin '' + substituteInPlace setup.py --replace "'gnureadline'" " " + ''; + + buildInputs = [ glibcLocales ]; + + checkInputs = [ nose pygments testpath ] ++ lib.optional isPy27 mock; + + propagatedBuildInputs = [ + backports_shutil_get_terminal_size decorator pickleshare prompt_toolkit + simplegeneric traitlets requests pathlib2 pexpect + ] ++ lib.optionals stdenv.isDarwin [ appnope ]; + + LC_ALL="en_US.UTF-8"; + + doCheck = false; # Circular dependency with ipykernel + + checkPhase = '' + nosetests + ''; + + meta = { + description = "IPython: Productive Interactive Computing"; + homepage = http://ipython.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ bjornfor jgeerds orivej lnl7 ]; + }; +} diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix new file mode 100644 index 00000000000..de7d0a8d81b --- /dev/null +++ b/pkgs/development/python-modules/ipython/default.nix @@ -0,0 +1,69 @@ +{ lib +, stdenv +, buildPythonPackage +, fetchPypi +, pythonOlder +# Build dependencies +, glibcLocales +# Test dependencies +, nose +, pygments +# Runtime dependencies +, jedi +, decorator +, pickleshare +, simplegeneric +, traitlets +, prompt_toolkit +, pexpect +, appnope +}: + +buildPythonPackage rec { + pname = "ipython"; + version = "6.0.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "f429b82b8d9807068da734b15965768bd21b15d0b706340b6d1b4d6f6f5b98a4"; + }; + + prePatch = lib.optionalString stdenv.isDarwin '' + substituteInPlace setup.py --replace "'gnureadline'" " " + ''; + + buildInputs = [ glibcLocales ]; + + checkInputs = [ nose pygments ]; + + propagatedBuildInputs = [ + jedi + decorator + pickleshare + simplegeneric + traitlets + prompt_toolkit + pexpect + ] ++ lib.optionals stdenv.isDarwin [appnope]; + + LC_ALL="en_US.UTF-8"; + + doCheck = false; # Circular dependency with ipykernel + + checkPhase = '' + nosetests + ''; + + # IPython 6.0.0 and above does not support Python < 3.3. + # The last IPython version to support older Python versions + # is 5.3.x. + disabled = pythonOlder "3.3"; + + meta = { + description = "IPython: Productive Interactive Computing"; + homepage = http://ipython.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ bjornfor jgeerds fridh ]; + }; +} diff --git a/pkgs/development/python-modules/ipywidgets/default.nix b/pkgs/development/python-modules/ipywidgets/default.nix new file mode 100644 index 00000000000..dcd5b89b6b8 --- /dev/null +++ b/pkgs/development/python-modules/ipywidgets/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, fetchPypi +, python +, nose +, pytest +, mock +, ipython +, ipykernel +, traitlets +, notebook +, widgetsnbextension +}: + +buildPythonPackage rec { + pname = "ipywidgets"; + version = "6.0.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "afa6248850cff14ef86117db87aeab0b12237e4eaf740e73716460ed593a43a7"; + }; + + # Tests are not distributed + # doCheck = false; + + buildInputs = [ nose pytest mock ]; + propagatedBuildInputs = [ + ipython + ipykernel + traitlets + notebook + widgetsnbextension + ]; + + checkPhase = '' + ${python.interpreter} -m unittest discover + ''; + + meta = { + description = "IPython HTML widgets for Jupyter"; + homepage = http://ipython.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/jedi/default.nix b/pkgs/development/python-modules/jedi/default.nix new file mode 100644 index 00000000000..3f5d4897537 --- /dev/null +++ b/pkgs/development/python-modules/jedi/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +}: + +buildPythonPackage rec { + pname = "jedi"; + version = "0.10.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "7abb618cac6470ebbd142e59c23daec5e6e063bfcecc8a43a037d2ab57276f4e"; + }; + + checkInputs = [ pytest ]; + + checkPhase = '' + py.test test + ''; + + # 7 failed + #doCheck = false; + + meta = { + homepage = https://github.com/davidhalter/jedi; + description = "An autocompletion tool for Python that can be used for text editors"; + license = lib.licenses.lgpl3Plus; + maintainers = with lib.maintainers; [ garbas ]; + }; +} diff --git a/pkgs/development/python-modules/jupyter_client/default.nix b/pkgs/development/python-modules/jupyter_client/default.nix new file mode 100644 index 00000000000..a45a4a84a3a --- /dev/null +++ b/pkgs/development/python-modules/jupyter_client/default.nix @@ -0,0 +1,39 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, traitlets +, jupyter_core +, pyzmq +, dateutil +, isPyPy +, py +}: + +buildPythonPackage rec { + pname = "jupyter_client"; + version = "5.0.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1fe573880b5ca4469ed0bece098f4b910c373d349e12525e1ea3566f5a14536b"; + }; + + buildInputs = [ nose ]; + propagatedBuildInputs = [traitlets jupyter_core pyzmq dateutil] ++ lib.optional isPyPy py; + + checkPhase = '' + nosetests -v + ''; + + # Circular dependency with ipykernel + doCheck = false; + + meta = { + description = "Jupyter protocol implementation and client libraries"; + homepage = http://jupyter.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/keras/default.nix b/pkgs/development/python-modules/keras/default.nix index 65c72ca9831..ab9d315e794 100644 --- a/pkgs/development/python-modules/keras/default.nix +++ b/pkgs/development/python-modules/keras/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "Keras"; - version = "1.2.2"; + version = "2.0.3"; name = "${pname}-${version}"; src = fetchPypi { inherit pname version; - sha256 = "0bby93sffjadrxnx9j9nn2lq0ygsgqjp16260c6lz77b6r1qrcfj"; + sha256 = "1x4p179smmnki6mng9n3lsi9glv2jg0y1ls154msplz9jm5bv39r"; }; checkInputs = [ diff --git a/pkgs/development/python-modules/kitchen/default.nix b/pkgs/development/python-modules/kitchen/default.nix new file mode 100644 index 00000000000..895cdedcb6e --- /dev/null +++ b/pkgs/development/python-modules/kitchen/default.nix @@ -0,0 +1,17 @@ +{ stdenv, buildPythonPackage, fetchPypi }: +buildPythonPackage rec { + pname = "kitchen"; + version = "1.2.4"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "0ggv3p4x8jvmmzhp0xm00h6pvh1g0gmycw71rjwagnrj8n23vxrq"; + }; + + meta = with stdenv.lib; { + description = "Kitchen contains a cornucopia of useful code"; + license = licenses.lgpl2; + maintainers = with maintainers; [ mornfall ]; + }; +} diff --git a/pkgs/development/python-modules/libsoundtouch/default.nix b/pkgs/development/python-modules/libsoundtouch/default.nix new file mode 100644 index 00000000000..132f5edf518 --- /dev/null +++ b/pkgs/development/python-modules/libsoundtouch/default.nix @@ -0,0 +1,35 @@ +{ buildPythonPackage +, fetchFromGitHub +, stdenv +, lib +, pythonOlder +, requests +, enum34 +}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "libsoundtouch"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "CharlesBlonde"; + repo = "libsoundtouch"; + rev = "7c8f943298bcae5f0c25ad7be7469de51373cdbd"; + sha256 = "1a9mdy09n4bjx6nang7wfn2nq87dg2s18px4yqsj53mn5kjf44n0"; + }; + + postPatch = lib.optionalString (! (pythonOlder "3.4")) '' + substituteInPlace setup.py --replace "'enum34>=1.1.6'" "" + ''; + + propagatedBuildInputs = [ requests enum34 ]; + + doCheck = false; + + meta = with stdenv.lib; { + description = "Bose Soundtouch Python library"; + homepage = https://github.com/CharlesBlonde/libsoundtouch; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/line_profiler/default.nix b/pkgs/development/python-modules/line_profiler/default.nix new file mode 100644 index 00000000000..570bba2a8c4 --- /dev/null +++ b/pkgs/development/python-modules/line_profiler/default.nix @@ -0,0 +1,36 @@ +{ lib +, buildPythonPackage +, fetchPypi +, cython +, isPyPy +, ipython +, python +}: + +buildPythonPackage rec { + pname = "line_profiler"; + version = "2.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "739f8ad0e4bcd0cb82e99afc09e00a0351234f6b3f0b1f7f0090a8a2fbbf8381"; + }; + + buildInputs = [ cython ]; + + propagatedBuildInputs = [ ipython ]; + + disabled = isPyPy; + + checkPhase = '' + ${python.interpreter} -m unittest discover -s tests + ''; + + meta = { + description = "Line-by-line profiler"; + homepage = https://github.com/rkern/line_profiler; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/llvmlite/default.nix b/pkgs/development/python-modules/llvmlite/default.nix index 1da50341750..6b6be639851 100644 --- a/pkgs/development/python-modules/llvmlite/default.nix +++ b/pkgs/development/python-modules/llvmlite/default.nix @@ -11,13 +11,13 @@ buildPythonPackage rec { pname = "llvmlite"; name = "${pname}-${version}"; - version = "0.15.0"; + version = "0.16.0"; disabled = isPyPy; src = fetchurl { url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.tar.gz"; - sha256 = "c855835537eda61f3a0d19aedc44f006d5084a2d322aee8ffa87aa06bb800dc4"; + sha256 = "ef3bae32482f91742d91571b5225a6943804291eb9405b98090a7b50942ec5e9"; }; propagatedBuildInputs = [ llvm ] ++ stdenv.lib.optional (pythonOlder "3.4") enum34; diff --git a/pkgs/development/python-modules/ltc_scrypt/default.nix b/pkgs/development/python-modules/ltc_scrypt/default.nix new file mode 100644 index 00000000000..273571c66e1 --- /dev/null +++ b/pkgs/development/python-modules/ltc_scrypt/default.nix @@ -0,0 +1,22 @@ +{ stdenv +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "ltc_scrypt"; + version = "1.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1h90hh3iw4i7zs7jgskdjlk8gi97b3v2zqsxdfwdvhrrnhpvv856"; + }; + + meta = with stdenv.lib; { + description = "Bindings for scrypt proof of work used by Litecoin"; + homepage = https://pypi.python.org/pypi/ltc_scrypt; + maintainers = with maintainers; [ asymmetric ]; + license = licenses.bsd2; + }; +} diff --git a/pkgs/development/python-modules/m2r/default.nix b/pkgs/development/python-modules/m2r/default.nix new file mode 100644 index 00000000000..49f1e2da5ba --- /dev/null +++ b/pkgs/development/python-modules/m2r/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchurl, + mistune, docutils } : +buildPythonPackage rec { + name = "m2r-${version}"; + version = "0.1.5"; + + src = fetchurl { + url = "mirror://pypi/m/m2r/${name}.tar.gz"; + sha256 = "08rjn3x1qag60wawjnq95wmgijrn33apr4fhj01s2p6hmrqgfj1l"; + }; + + propagatedBuildInputs = [ mistune docutils ]; + + # Some tests interfeere with each other (test.md and test.rst are + # deleted by some tests and not properly regenerated) + doCheck = false; + + meta = with stdenv.lib; { + homepage = https://github.com/miyakogi/m2r; + description = "converts a markdown file including reST markups to a valid reST format"; + license = licenses.mit; + maintainers = [ ]; + }; +} diff --git a/pkgs/development/python-modules/magic-wormhole/default.nix b/pkgs/development/python-modules/magic-wormhole/default.nix index 483e9aa3a3b..99da5e83a87 100644 --- a/pkgs/development/python-modules/magic-wormhole/default.nix +++ b/pkgs/development/python-modules/magic-wormhole/default.nix @@ -1,18 +1,34 @@ -{ stdenv, fetchurl, nettools, glibcLocales, pythonPackages }: +{ lib +, buildPythonPackage +, fetchPypi +, nettools +, glibcLocales +, autobahn +, cffi +, click +, hkdf +, pynacl +, spake2 +, tqdm +, python +, mock +}: -pythonPackages.buildPythonApplication rec { - name = "magic-wormhole-${version}"; +buildPythonPackage rec { + pname = "magic-wormhole"; version = "0.8.1"; + name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://pypi/m/magic-wormhole/${name}.tar.gz"; + src = fetchPypi { + inherit pname version; sha256 = "1yh5nbhh9z1am2pqnb5qqyq1zjl1m7z6jnkmvry2q14qwspw9had"; }; + checkInputs = [ mock ]; buildInputs = [ nettools glibcLocales ]; - propagatedBuildInputs = with pythonPackages; [ autobahn cffi click hkdf pynacl spake2 tqdm ]; + propagatedBuildInputs = [ autobahn cffi click hkdf pynacl spake2 tqdm ]; - patchPhase = '' + postPatch = '' sed -i -e "s|'ifconfig'|'${nettools}/bin/ifconfig'|" src/wormhole/ipaddrs.py sed -i -e "s|if (os.path.dirname(os.path.abspath(wormhole))|if not os.path.abspath(wormhole).startswith('/nix/store') and (os.path.dirname(os.path.abspath(wormhole))|" src/wormhole/test/test_scripts.py # XXX: disable one test due to warning: @@ -24,10 +40,10 @@ pythonPackages.buildPythonApplication rec { export PATH="$PATH:$out/bin" export LANG="en_US.UTF-8" export LC_ALL="en_US.UTF-8" - ${pythonPackages.python.interpreter} -m wormhole.test.run_trial wormhole + ${python.interpreter} -m wormhole.test.run_trial wormhole ''; - meta = with stdenv.lib; { + meta = with lib; { description = "Securely transfer data between computers"; homepage = "https://github.com/warner/magic-wormhole"; license = licenses.mit; diff --git a/pkgs/development/python-modules/metaphone/default.nix b/pkgs/development/python-modules/metaphone/default.nix new file mode 100644 index 00000000000..b72789369f2 --- /dev/null +++ b/pkgs/development/python-modules/metaphone/default.nix @@ -0,0 +1,23 @@ +{ stdenv, buildPythonPackage, isPy3k, fetchPypi, nose }: + +buildPythonPackage rec { + pname = "Metaphone"; + version = "0.6"; + name = "metaphone-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "09ysaczwh2rlsqq9j5fz7m4pq2fs0axp5vvivrpfrdvclvffl2xd"; + }; + + disabled = isPy3k; + + buildInputs = [ nose ]; + + meta = with stdenv.lib; { + homepage = https://github.com/oubiwann/metaphone; + description = "A Python implementation of the metaphone and double metaphone algorithms"; + license = licenses.bsd3; + maintainers = with maintainers; [ ris ]; + }; +} diff --git a/pkgs/development/python-modules/mplleaflet/default.nix b/pkgs/development/python-modules/mplleaflet/default.nix new file mode 100644 index 00000000000..29984eed9e9 --- /dev/null +++ b/pkgs/development/python-modules/mplleaflet/default.nix @@ -0,0 +1,28 @@ +{ lib +, buildPythonPackage +, fetchPypi +, jinja2 +, six +}: + +buildPythonPackage rec { + pname = "mplleaflet"; + version = "0.0.5"; + name = "${pname}-${version}"; + + propagatedBuildInputs = [ jinja2 six ]; + + # No tests in archive + doCheck = false; + + src = fetchPypi { + inherit pname version; + sha256 = "049e0b91797ce5b462853395138161fed9e8dfc1f4723f482ebb0739a0bbd289"; + }; + + meta = { + description = "Convert Matplotlib plots into Leaflet web maps"; + homepage = http://github.com/jwass/mplleaflet; + license = with lib.licenses; [ bsd3 ]; + }; +} diff --git a/pkgs/development/python-modules/natsort/default.nix b/pkgs/development/python-modules/natsort/default.nix new file mode 100644 index 00000000000..79ec9f5bd89 --- /dev/null +++ b/pkgs/development/python-modules/natsort/default.nix @@ -0,0 +1,54 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchPypi +, hypothesis +, pytestcache +, pytestcov +, pytestflakes +, pytestpep8 +, pytest +, glibcLocales +, mock ? null +, pathlib ? null +}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "natsort"; + version = "5.0.3"; + + buildInputs = [ + hypothesis + pytestcache + pytestcov + pytestflakes + pytestpep8 + pytest + glibcLocales + ] + # pathlib was made part of standard library in 3.5: + ++ (lib.optionals (pythonOlder "3.4") [ pathlib ]) + # based on testing-requirements.txt: + ++ (lib.optionals (pythonOlder "3.3") [ mock ]); + + src = fetchPypi { + inherit pname version; + sha256 = "1h87n0jcsi6mgjx1pws6g1lmcn8jwabwxj8hq334jvziaq0plyym"; + }; + + # do not run checks on nix_run_setup.py + patches = [ ./setup.patch ]; + + # testing based on project's tox.ini + checkPhase = '' + pytest --doctest-modules natsort + pytest --flakes --pep8 --cov natsort --cov-report term-missing + ''; + + meta = { + description = "Natural sorting for python"; + homepage = https://github.com/SethMMorton/natsort; + license = lib.licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/natsort/setup.patch b/pkgs/development/python-modules/natsort/setup.patch new file mode 100644 index 00000000000..4c52b740152 --- /dev/null +++ b/pkgs/development/python-modules/natsort/setup.patch @@ -0,0 +1,20 @@ +diff --git a/setup.cfg b/setup.cfg +index 604994d..e38c3ec 100644 +--- a/setup.cfg ++++ b/setup.cfg +@@ -6,6 +6,7 @@ formats = gztar + + [tool:pytest] + flakes-ignore = ++ nix_run_setup.py ALL + natsort/compat/py23.py UndefinedName + natsort/__init__.py UnusedImport + natsort/compat/* UnusedImport +@@ -14,6 +15,7 @@ flakes-ignore = + test_natsort/test_locale_help.py UnusedImport RedefinedWhileUnused + test_natsort/compat/* UnusedImport + pep8ignore = ++ nix_run_setup.py ALL + natsort/ns_enum.py E126 E241 E123 E221 + test_natsort/test_*.py E501 E241 E221 + test_natsort/test_natsort_keygen.py E501 E241 E221 E701 diff --git a/pkgs/development/python-modules/notebook/default.nix b/pkgs/development/python-modules/notebook/default.nix new file mode 100644 index 00000000000..3a24c5566bf --- /dev/null +++ b/pkgs/development/python-modules/notebook/default.nix @@ -0,0 +1,52 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, glibcLocales +, isPy27 +, mock +, jinja2 +, tornado +, ipython_genutils +, traitlets +, jupyter_core +, jupyter_client +, nbformat +, nbconvert +, ipykernel +, terminado +, requests +, pexpect +}: + +buildPythonPackage rec { + pname = "notebook"; + version = "5.0.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1cea3bbbd03c8e5842a1403347a8cc8134486b3ce081a2e5b1952a00ea66ed54"; + }; + + LC_ALL = "en_US.UTF-8"; + + buildInputs = [nose glibcLocales] ++ lib.optionals isPy27 [mock]; + + propagatedBuildInputs = [jinja2 tornado ipython_genutils traitlets jupyter_core + jupyter_client nbformat nbconvert ipykernel terminado requests pexpect ]; + + checkPhase = '' + nosetests -v + ''; + + # Certain tests fail due to being in a chroot. + # PermissionError + doCheck = false; + meta = { + description = "The Jupyter HTML notebook is a web-based notebook environment for interactive computing"; + homepage = http://jupyter.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/numba/default.nix b/pkgs/development/python-modules/numba/default.nix index 422fee39641..3ce40f2618a 100644 --- a/pkgs/development/python-modules/numba/default.nix +++ b/pkgs/development/python-modules/numba/default.nix @@ -14,12 +14,12 @@ }: buildPythonPackage rec { - version = "0.30.1"; + version = "0.31.0"; name = "numba-${version}"; src = fetchurl { url = "mirror://pypi/n/numba/${name}.tar.gz"; - sha256 = "66e6254b3002f448fd212c5df4c8a69964dff9b9f315fb733e3c95e7e2b6c8fd"; + sha256 = "69f8ecacca687e89625abbc9f9ff2b64b3cc8649c284a3bc92f2df6dc82a7c80"; }; NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1"; diff --git a/pkgs/development/python-modules/numpy.nix b/pkgs/development/python-modules/numpy/default.nix index 16c919eb4b2..d427a33f80f 100644 --- a/pkgs/development/python-modules/numpy.nix +++ b/pkgs/development/python-modules/numpy/default.nix @@ -1,16 +1,17 @@ -{lib, python, buildPythonPackage, isPy27, isPyPy, gfortran, nose, blas}: +{lib, fetchurl, python, buildPythonPackage, isPy27, isPyPy, gfortran, nose, blas}: -args: +buildPythonPackage rec { + pname = "numpy"; + version = "1.12.1"; + name = "${pname}-${version}"; -let - inherit (args) version; -in buildPythonPackage (args // rec { - - name = "numpy-${version}"; + src = fetchurl { + url = "mirror://pypi/n/numpy/numpy-${version}.zip"; + sha256 = "a65266a4ad6ec8936a1bc85ce51f8600634a31a258b722c9274a80ff189d9542"; + }; disabled = isPyPy; - buildInputs = args.buildInputs or [ gfortran nose ]; - propagatedBuildInputs = args.propagatedBuildInputs or [ passthru.blas ]; + buildInputs = [ gfortran nose blas ]; patches = lib.optionals (python.hasDistutilsCxxPatch or false) [ # See cpython 2.7 patches. @@ -26,8 +27,8 @@ in buildPythonPackage (args // rec { echo "Creating site.cfg file..." cat << EOF > site.cfg [openblas] - include_dirs = ${passthru.blas}/include - library_dirs = ${passthru.blas}/lib + include_dirs = ${blas}/include + library_dirs = ${blas}/lib EOF ''; @@ -56,5 +57,5 @@ in buildPythonPackage (args // rec { description = "Scientific tools for Python"; homepage = "http://numpy.scipy.org/"; maintainers = with lib.maintainers; [ fridh ]; - } // (args.meta or {}); -}) + }; +} diff --git a/pkgs/development/python-modules/numpy-distutils-C++.patch b/pkgs/development/python-modules/numpy/numpy-distutils-C++.patch index 4b2d5c640e6..4b2d5c640e6 100644 --- a/pkgs/development/python-modules/numpy-distutils-C++.patch +++ b/pkgs/development/python-modules/numpy/numpy-distutils-C++.patch diff --git a/pkgs/development/python-modules/os-testr/default.nix b/pkgs/development/python-modules/os-testr/default.nix new file mode 100644 index 00000000000..3dbf54102e9 --- /dev/null +++ b/pkgs/development/python-modules/os-testr/default.nix @@ -0,0 +1,32 @@ +{ stdenv, buildPythonPackage, fetchurl, python, + pbr, Babel, testrepository, subunit, testtools, + coverage, oslosphinx, oslotest, testscenarios, six, ddt +}: +buildPythonPackage rec { + name = "os-testr-${version}"; + version = "0.8.1"; + + src = fetchurl { + url = "mirror://pypi/o/os-testr/${name}.tar.gz"; + sha256 = "10ws7l5p25psnp6rwymwdzh4zagmmnbf56xwg06cn2292m95l4i7"; + }; + + patchPhase = '' + sed -i 's@python@${python.interpreter}@' .testr.conf + sed -i 's@python@${python.interpreter}@' os_testr/tests/files/testr-conf + ''; + + checkPhase = '' + export PATH=$PATH:$out/bin + ${python.interpreter} setup.py test + ''; + + propagatedBuildInputs = [ pbr Babel testrepository subunit testtools ]; + buildInputs = [ coverage oslosphinx oslotest testscenarios six ddt ]; + + meta = with stdenv.lib; { + description = "A testr wrapper to provide functionality for OpenStack projects"; + homepage = http://docs.openstack.org/developer/os-testr/; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 21a7755c409..eb5b5987a40 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -1,8 +1,9 @@ { buildPythonPackage +, fetchPypi , python , stdenv , fetchurl -, nose +, pytest , glibcLocales , cython , dateutil @@ -27,16 +28,16 @@ let inherit (stdenv) isDarwin; in buildPythonPackage rec { pname = "pandas"; - version = "0.19.2"; + version = "0.20.1"; name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.tar.gz"; - sha256 = "6f0f4f598c2b16746803c8bafef7c721c57e4844da752d36240c0acf97658014"; + src = fetchPypi { + inherit pname version; + sha256 = "42707365577ef69f7c9c168ddcf045df2957595a9ee71bc13c7997eecb96b190"; }; LC_ALL = "en_US.UTF-8"; - buildInputs = [ nose glibcLocales ] ++ optional isDarwin libcxx; + buildInputs = [ pytest glibcLocales ] ++ optional isDarwin libcxx; propagatedBuildInputs = [ cython dateutil @@ -56,7 +57,7 @@ in buildPythonPackage rec { # For OSX, we need to add a dependency on libcxx, which provides # `complex.h` and other libraries that pandas depends on to build. - patchPhase = optionalString isDarwin '' + postPatch = optionalString isDarwin '' cpp_sdk="${libcxx}/include/c++/v1"; echo "Adding $cpp_sdk to the setup.py common_include variable" substituteInPlace setup.py \ @@ -70,15 +71,10 @@ in buildPythonPackage rec { ''; # The flag `-A 'not network'` will disable tests that use internet. - # The `-e` flag disables a few problematic tests. - checkPhase = '' runHook preCheck - # The flag `-w` provides the initial directory to search for tests. - # The flag `-A 'not network'` will disable tests that use internet. - nosetests -w $out/${python.sitePackages}/pandas --no-path-adjustment -A 'not slow and not network' --stop \ - --verbosity=3 - runHook postCheck + py.test $out/${python.sitePackages}/pandas --skip-slow --skip-network + runHook postCheck ''; meta = { diff --git a/pkgs/development/python-modules/pbr/default.nix b/pkgs/development/python-modules/pbr/default.nix new file mode 100644 index 00000000000..15c0d921ef8 --- /dev/null +++ b/pkgs/development/python-modules/pbr/default.nix @@ -0,0 +1,21 @@ +{ stdenv, buildPythonPackage, fetchPypi }: + +buildPythonPackage rec { + pname = "pbr"; + version = "2.0.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "0ccd2db529afd070df815b1521f01401d43de03941170f8a800e7531faba265d"; + }; + + # circular dependencies with fixtures + doCheck = false; + + meta = { + homepage = "http://docs.openstack.org/developer/pbr/"; + license = stdenv.lib.licenses.asl20; + description = "Python Build Reasonableness"; + }; +} diff --git a/pkgs/development/python-modules/phpserialize/default.nix b/pkgs/development/python-modules/phpserialize/default.nix new file mode 100644 index 00000000000..57dd687604d --- /dev/null +++ b/pkgs/development/python-modules/phpserialize/default.nix @@ -0,0 +1,22 @@ +{lib, buildPythonPackage, fetchPypi}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "phpserialize"; + version = "1.3"; + + src = fetchPypi { + inherit pname version; + sha256 = "19qgkb9z4zjbjxlpwh2w6pxkz2j3iymnydi69jl0jg905lqjsrxz"; + }; + + # project does not have tests at the moment + doCheck = false; + + meta = { + description = "A port of the serialize and unserialize functions of PHP to Python"; + homepage = http://github.com/mitsuhiko/phpserialize; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ jluttine ]; + }; +} diff --git a/pkgs/development/python-modules/piexif/default.nix b/pkgs/development/python-modules/piexif/default.nix new file mode 100644 index 00000000000..e21593993cd --- /dev/null +++ b/pkgs/development/python-modules/piexif/default.nix @@ -0,0 +1,24 @@ +{lib, buildPythonPackage, fetchurl, pillow}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "piexif"; + version = "1.0.12"; + + # pillow needed for unit tests + buildInputs = [ pillow ]; + + # No .tar.gz source available at PyPI, only .zip source, so need to use + # fetchurl because fetchPypi doesn't support .zip. + src = fetchurl { + url = "mirror://pypi/${builtins.substring 0 1 pname}/${pname}/${name}.zip"; + sha256 = "15dvdr7b5xxsbsq5k6kq8h0xnzrkqzc08dzlih48a21x27i02bii"; + }; + + meta = { + description = "Simplify Exif manipulations with Python"; + homepage = https://github.com/hMatoba/Piexif; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ jluttine ]; + }; +} diff --git a/pkgs/development/python-modules/pika-pool/default.nix b/pkgs/development/python-modules/pika-pool/default.nix new file mode 100644 index 00000000000..93933c43523 --- /dev/null +++ b/pkgs/development/python-modules/pika-pool/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi +, pika +}: + +buildPythonPackage rec { + pname = "pika-pool"; + version = "0.1.3"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "f3985888cc2788cdbd293a68a8b5702a9c955db6f7b8b551aeac91e7f32da397"; + }; + + # Tests require database connections + doCheck = false; + + propagatedBuildInputs = [ pika ]; + meta = with stdenv.lib; { + homepage = "https://github.com/bninja/pika-pool"; + license = licenses.bsdOriginal; + description = "Pools for pikas."; + }; +} diff --git a/pkgs/development/python-modules/plotly/default.nix b/pkgs/development/python-modules/plotly/default.nix new file mode 100644 index 00000000000..6e5627a58ca --- /dev/null +++ b/pkgs/development/python-modules/plotly/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchPypi +, decorator +, nbformat +, pytz +, requests +, six +}: + +buildPythonPackage rec { + pname = "plotly"; + version = "2.0.8"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "1zbwx771w6425w4g6l9fhq4x1854fdnni6xq9xhvs8xqgxkrljm5"; + }; + + propagatedBuildInputs = [ + decorator + nbformat + pytz + requests + six + ]; + + # No tests in archive + doCheck = false; + + meta = { + description = "Python plotting library for collaborative, interactive, publication-quality graphs"; + homepage = https://plot.ly/python/; + license = with lib.licenses; [ mit ]; + }; +} diff --git a/pkgs/development/python-modules/plumbum/default.nix b/pkgs/development/python-modules/plumbum/default.nix new file mode 100644 index 00000000000..216c163bc9d --- /dev/null +++ b/pkgs/development/python-modules/plumbum/default.nix @@ -0,0 +1,21 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +}: + +buildPythonPackage rec { + pname = "plumbum"; + version = "1.6.3"; + name = "${pname}-${version}"; + + checkInputs = [ pytest ]; + + # No tests in archive + doCheck = false; + + src = fetchPypi { + inherit pname version; + sha256 = "0249e708459f1b05627a7ca8787622c234e4db495a532acbbd1f1f17f28c7320"; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/pycryptodome/default.nix b/pkgs/development/python-modules/pycryptodome/default.nix index 04964ab03dd..d465c0befe1 100644 --- a/pkgs/development/python-modules/pycryptodome/default.nix +++ b/pkgs/development/python-modules/pycryptodome/default.nix @@ -3,7 +3,6 @@ buildPythonPackage rec { version = "3.4.3"; name = "pycryptodome-${version}"; - namePrefix = ""; src = fetchurl { url = "mirror://pypi/p/pycryptodome/${name}.tar.gz"; diff --git a/pkgs/development/python-modules/pydot/default.nix b/pkgs/development/python-modules/pydot/default.nix new file mode 100644 index 00000000000..38123acd32e --- /dev/null +++ b/pkgs/development/python-modules/pydot/default.nix @@ -0,0 +1,27 @@ +{ lib +, buildPythonPackage +, fetchPypi +, chardet +, pyparsing +, graphviz +}: + +buildPythonPackage rec { + pname = "pydot"; + version = "1.2.3"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "edb5d3f249f97fbd9c4bb16959e61bc32ecf40eee1a9f6d27abe8d01c0a73502"; + }; + checkInputs = [ chardet ]; + # No tests in archive + doCheck = false; + propagatedBuildInputs = [pyparsing graphviz]; + meta = { + homepage = https://github.com/erocarrera/pydot; + description = "Allows to easily create both directed and non directed graphs from Python"; + licenses = with lib.licenses; [ mit ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/pylint/default.nix b/pkgs/development/python-modules/pylint/default.nix index 844d2e22954..67604c3f253 100644 --- a/pkgs/development/python-modules/pylint/default.nix +++ b/pkgs/development/python-modules/pylint/default.nix @@ -35,7 +35,7 @@ meta = with stdenv.lib; { homepage = http://www.logilab.org/project/pylint; description = "A bug and style checker for Python"; - platform = platforms.all; + platforms = platforms.all; license = licenses.gpl1Plus; maintainers = with maintainers; [ nand0p ]; }; diff --git a/pkgs/development/python-modules/pyproj/default.nix b/pkgs/development/python-modules/pyproj/default.nix new file mode 100644 index 00000000000..8b15c63fb20 --- /dev/null +++ b/pkgs/development/python-modules/pyproj/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildPythonPackage +, fetchPypi +, python +, nose2 +, proj ? null +}: + +buildPythonPackage (rec { + pname = "pyproj"; + version = "1.9.5.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "53fa54c8fa8a1dfcd6af4bf09ce1aae5d4d949da63b90570ac5ec849efaf3ea8"; + }; + + buildInputs = [ nose2 ]; + + checkPhase = '' + runHook preCheck + pushd unittest # changing directory should ensure we're importing the global pyproj + ${python.interpreter} test.py && ${python.interpreter} -c "import doctest, pyproj, sys; sys.exit(doctest.testmod(pyproj)[0])" + popd + runHook postCheck + ''; + + meta = { + description = "Python interface to PROJ.4 library"; + homepage = http://github.com/jswhit/pyproj; + license = with lib.licenses; [ isc ]; + }; +} // (if proj == null then {} else { PROJ_DIR = proj; })) diff --git a/pkgs/development/python-modules/pyrax.nix b/pkgs/development/python-modules/pyrax.nix index 0abf54f03fe..87c0c3db264 100644 --- a/pkgs/development/python-modules/pyrax.nix +++ b/pkgs/development/python-modules/pyrax.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchurl, requests2, novaclient, keyring, +{ lib, buildPythonPackage, fetchurl, requests, novaclient, keyring, rackspace-novaclient, six, isPy3k, pytest, glibcLocales }: buildPythonPackage rec { name = "pyrax-1.9.8"; @@ -15,7 +15,7 @@ buildPythonPackage rec { ''; disabled = isPy3k; - propagatedBuildInputs = [ requests2 novaclient keyring rackspace-novaclient six ]; + propagatedBuildInputs = [ requests novaclient keyring rackspace-novaclient six ]; LC_ALL = "en_US.UTF-8"; buildInputs = [ pytest glibcLocales ]; diff --git a/pkgs/development/python-modules/pyroute2/default.nix b/pkgs/development/python-modules/pyroute2/default.nix index 91bfa97cb97..1b47b7f3f7d 100644 --- a/pkgs/development/python-modules/pyroute2/default.nix +++ b/pkgs/development/python-modules/pyroute2/default.nix @@ -16,6 +16,6 @@ buildPythonPackage rec { homepage = https://github.com/svinota/pyroute2; license = licenses.asl20; maintainers = [maintainers.mic92]; - platform = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/development/python-modules/pyside/apiextractor.nix b/pkgs/development/python-modules/pyside/apiextractor.nix index a27a365bb2c..e02f32f223d 100644 --- a/pkgs/development/python-modules/pyside/apiextractor.nix +++ b/pkgs/development/python-modules/pyside/apiextractor.nix @@ -1,6 +1,9 @@ -{ stdenv, fetchurl, cmake, libxml2, libxslt, python, sphinx, qt4 }: +{ stdenv, fetchurl, cmake, libxml2, libxslt, python2, qt4 }: -stdenv.mkDerivation { +# This derivation does not provide any Python module and should therefore be called via `all-packages.nix`. +let + pythonEnv = python2.withPackages(ps: with ps; [ sphinx ]); +in stdenv.mkDerivation { name = "pyside-apiextractor-0.10.10"; src = fetchurl { @@ -10,7 +13,7 @@ stdenv.mkDerivation { enableParallelBuilding = true; - buildInputs = [ cmake libxml2 libxslt sphinx qt4 ]; + buildInputs = [ cmake qt4 pythonEnv libxml2 libxslt ]; meta = { description = "Eases the development of bindings of Qt-based libraries for high level languages by automating most of the process"; diff --git a/pkgs/development/python-modules/pyside/default.nix b/pkgs/development/python-modules/pyside/default.nix index 4aff09b8f8f..009afdd3a03 100644 --- a/pkgs/development/python-modules/pyside/default.nix +++ b/pkgs/development/python-modules/pyside/default.nix @@ -1,5 +1,6 @@ { lib, fetchurl, cmake, python, buildPythonPackage, pysideGeneratorrunner, pysideShiboken, qt4 }: +# This derivation provides a Python module and should therefore be called via `python-packages.nix`. buildPythonPackage rec { name = "pyside-${version}"; version = "1.2.4"; diff --git a/pkgs/development/python-modules/pyside/generatorrunner.nix b/pkgs/development/python-modules/pyside/generatorrunner.nix index 28ea88ad1fa..8ecf2734832 100644 --- a/pkgs/development/python-modules/pyside/generatorrunner.nix +++ b/pkgs/development/python-modules/pyside/generatorrunner.nix @@ -1,7 +1,12 @@ -{ stdenv, fetchurl, cmake, pysideApiextractor, python, sphinx, qt4 }: +{ stdenv, fetchurl, cmake, pysideApiextractor, python2, qt4 }: -stdenv.mkDerivation { - name = "pyside-generatorrunner-0.6.16"; +# This derivation does not provide any Python module and should therefore be called via `all-packages.nix`. +let + pythonEnv = python2.withPackages(ps: with ps; [ sphinx ]); +in stdenv.mkDerivation rec { + pname = "pyside-generatorrunner"; + version = "0.6.16"; + name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/PySide/Generatorrunner/archive/0.6.16.tar.gz"; @@ -10,7 +15,7 @@ stdenv.mkDerivation { enableParallelBuilding = true; - buildInputs = [ cmake pysideApiextractor sphinx qt4 ]; + buildInputs = [ cmake pysideApiextractor qt4 pythonEnv ]; meta = { description = "Eases the development of binding generators for C++ and Qt-based libraries by providing a framework to help automating most of the process"; diff --git a/pkgs/development/python-modules/pyside/shiboken.nix b/pkgs/development/python-modules/pyside/shiboken.nix index 8c91b63d0e1..cef78c21550 100644 --- a/pkgs/development/python-modules/pyside/shiboken.nix +++ b/pkgs/development/python-modules/pyside/shiboken.nix @@ -1,10 +1,14 @@ -{ stdenv, fetchurl, cmake, libxml2, libxslt, pysideApiextractor, pysideGeneratorrunner, python, sphinx, qt4, isPy3k, isPy35 }: +{ lib, fetchurl, cmake, buildPythonPackage, libxml2, libxslt, pysideApiextractor, pysideGeneratorrunner, python, sphinx, qt4, isPy3k, isPy35 }: +# This derivation provides a Python module and should therefore be called via `python-packages.nix`. # Python 3.5 is not supported: https://github.com/PySide/Shiboken/issues/77 -stdenv.mkDerivation rec { - name = "pyside-shiboken-${version}"; +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pyside-shiboken"; version = "1.2.4"; + format = "other"; + src = fetchurl { url = "https://github.com/PySide/Shiboken/archive/${version}.tar.gz"; sha256 = "1536f73a3353296d97a25e24f9554edf3e6a48126886f8d21282c3645ecb96a4"; @@ -25,9 +29,9 @@ stdenv.mkDerivation rec { meta = { description = "Plugin (front-end) for pyside-generatorrunner, that generates bindings for C++ libraries using CPython source code"; - license = stdenv.lib.licenses.gpl2; + license = lib.licenses.gpl2; homepage = "http://www.pyside.org/docs/shiboken/"; - maintainers = [ stdenv.lib.maintainers.chaoflow ]; - platforms = stdenv.lib.platforms.all; + maintainers = [ lib.maintainers.chaoflow ]; + platforms = lib.platforms.all; }; } diff --git a/pkgs/development/python-modules/pyside/tools.nix b/pkgs/development/python-modules/pyside/tools.nix index 11f2bd97175..9d02a016e72 100644 --- a/pkgs/development/python-modules/pyside/tools.nix +++ b/pkgs/development/python-modules/pyside/tools.nix @@ -1,7 +1,11 @@ -{ stdenv, fetchurl, cmake, pyside, python, qt4, pysideShiboken }: +{ lib, fetchurl, cmake, pyside, qt4, pysideShiboken, buildPythonPackage }: -stdenv.mkDerivation { - name = "pyside-tools-0.2.15"; +# This derivation provides a Python module and should therefore be called via `python-packages.nix`. +buildPythonPackage rec { + pname = "pyside-tools"; + version = "0.2.15"; + name = "${pname}-${version}"; + format = "other"; src = fetchurl { url = "https://github.com/PySide/Tools/archive/0.2.15.tar.gz"; @@ -10,13 +14,13 @@ stdenv.mkDerivation { enableParallelBuilding = true; - buildInputs = [ cmake pyside python qt4 pysideShiboken ]; + buildInputs = [ cmake pyside qt4 pysideShiboken ]; meta = { description = "Tools for pyside, the LGPL-licensed Python bindings for the Qt cross-platform application and UI framework"; - license = stdenv.lib.licenses.gpl2; + license = lib.licenses.gpl2; homepage = "http://www.pyside.org"; - maintainers = [ stdenv.lib.maintainers.chaoflow ]; - platforms = stdenv.lib.platforms.all; + maintainers = [ lib.maintainers.chaoflow ]; + platforms = lib.platforms.all; }; } diff --git a/pkgs/development/python-modules/pyspread/default.nix b/pkgs/development/python-modules/pyspread/default.nix new file mode 100644 index 00000000000..2f275005c19 --- /dev/null +++ b/pkgs/development/python-modules/pyspread/default.nix @@ -0,0 +1,57 @@ +{ buildPythonPackage +, fetchPypi +, isPy3k +, stdenv +, numpy +, wxPython +, matplotlib +, pycairo +, python-gnupg +, xlrd +, xlwt +, jedi +, pyenchant +, basemap +, pygtk +, makeDesktopItem +}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pyspread"; + version = "1.1"; + + src = fetchPypi { + inherit pname version; + sha256 = "0m1a4zvzrfrnc42j8mrbm7747w03nzyl9z02wjagccmlhi6nd9hx"; + }; + + propagatedBuildInputs = [ numpy wxPython matplotlib pycairo python-gnupg xlrd xlwt jedi pyenchant basemap pygtk ]; + # Could also (optionally) add pyrsvg and python bindings for libvlc + + # Tests try to access X Display + doCheck = false; + + disabled = isPy3k; + + desktopItem = makeDesktopItem rec { + name = pname; + exec = name; + icon = name; + desktopName = "Pyspread"; + genericName = "Spreadsheet"; + comment = meta.description; + categories = "Development;Spreadsheet;"; + }; + + postInstall = '' + mkdir -p $out/share/applications + cp $desktopItem/share/applications/* $out/share/applications + ''; + + meta = with stdenv.lib; { + description = "Pyspread is a non-traditional spreadsheet application that is based on and written in the programming language Python"; + homepage = https://manns.github.io/pyspread/; + license = licenses.gpl3; + }; +} diff --git a/pkgs/development/python-modules/pytest-asyncio/default.nix b/pkgs/development/python-modules/pytest-asyncio/default.nix new file mode 100644 index 00000000000..966a207e50c --- /dev/null +++ b/pkgs/development/python-modules/pytest-asyncio/default.nix @@ -0,0 +1,21 @@ +{ stdenv, buildPythonPackage, fetchurl, pytest, isPy3k }: +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pytest-asyncio"; + version = "0.5.0"; + + disabled = !isPy3k; + + src = fetchurl { + url = "mirror://pypi/p/${pname}/${name}.tar.gz"; + sha256 = "03sxq8fglr4lw4y6wqlbli9ypr65fxzx6hlpn5wpccx8v5472iff"; + }; + + buildInputs = [ pytest ]; + + meta = with stdenv.lib; { + description = "library for testing asyncio code with pytest"; + license = licenses.asl20; + homepage = https://github.com/pytest-dev/pytest-asyncio; + }; +} diff --git a/pkgs/development/python-modules/pytest-cram/default.nix b/pkgs/development/python-modules/pytest-cram/default.nix new file mode 100644 index 00000000000..fdd2b2316e2 --- /dev/null +++ b/pkgs/development/python-modules/pytest-cram/default.nix @@ -0,0 +1,34 @@ +{lib, buildPythonPackage, fetchPypi, pytest, cram, bash, writeText}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + version = "0.1.1"; + pname = "pytest-cram"; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [ cram ]; + + src = fetchPypi { + inherit pname version; + sha256 = "0ad05999iqzyjay9y5lc0cnd3jv8qxqlzsvxzp76shslmhrv0c4f"; + }; + + postPatch = '' + substituteInPlace pytest_cram/tests/test_options.py \ + --replace "/bin/bash" "${bash}/bin/bash" + ''; + + # Remove __init__.py from tests folder, otherwise pytest raises an error that + # the imported and collected modules are different. + checkPhase = '' + rm pytest_cram/tests/__init__.py + pytest pytest_cram + ''; + + meta = { + description = "Test command-line applications with pytest and cram"; + homepage = https://github.com/tbekolay/pytest-cram; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ jluttine ]; + }; +} diff --git a/pkgs/development/python-modules/pytest-datafiles/default.nix b/pkgs/development/python-modules/pytest-datafiles/default.nix new file mode 100644 index 00000000000..6df1792f884 --- /dev/null +++ b/pkgs/development/python-modules/pytest-datafiles/default.nix @@ -0,0 +1,19 @@ +{ stdenv, buildPythonPackage, fetchPypi, py, pytest }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pytest-datafiles"; + version = "1.0"; + src = fetchPypi { + inherit version pname; + sha256 = "1w5435b5pimk6479ml53lmld3qbag7awcg4gl3ljdywc1v096r5v"; + }; + + buildInputs = [ py pytest ]; + + meta = with stdenv.lib; { + license = licenses.mit; + website = https://pypi.python.org/pypi/pytest-catchlog/; + description = "py.test plugin to create a 'tmpdir' containing predefined files/directories."; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/pytest-flake8/default.nix b/pkgs/development/python-modules/pytest-flake8/default.nix new file mode 100644 index 00000000000..93883283627 --- /dev/null +++ b/pkgs/development/python-modules/pytest-flake8/default.nix @@ -0,0 +1,29 @@ +{lib, buildPythonPackage, fetchPypi, pytest, flake8}: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pytest-flake8"; + version = "0.8.1"; + + # although pytest is a runtime dependency, do not add it as + # propagatedBuildInputs in order to allow packages depend on another version + # of pytest more easily + buildInputs = [ pytest ]; + propagatedBuildInputs = [ flake8 ]; + + src = fetchPypi { + inherit pname version; + sha256 = "1za5i09gz127yraigmcl443w6149714l279rmlfxg1bl2kdsc45a"; + }; + + checkPhase = '' + pytest --ignore=nix_run_setup.py . + ''; + + meta = { + description = "py.test plugin for efficiently checking PEP8 compliance"; + homepage = https://github.com/tholo/pytest-flake8; + maintainers = with lib.maintainers; [ jluttine ]; + license = lib.licenses.bsd2; + }; +} diff --git a/pkgs/development/python-modules/pytest-httpbin/default.nix b/pkgs/development/python-modules/pytest-httpbin/default.nix new file mode 100644 index 00000000000..34a2bf7e31c --- /dev/null +++ b/pkgs/development/python-modules/pytest-httpbin/default.nix @@ -0,0 +1,36 @@ +{ buildPythonPackage +, lib +, fetchFromGitHub +, pytest +, flask +, decorator +, httpbin +, six +, requests +}: + +buildPythonPackage rec { + name = "pytest-httpbin-${version}"; + version = "0.2.3"; + + src = fetchFromGitHub { + owner = "kevin1024"; + repo = "pytest-httpbin"; + rev = "v${version}"; + sha256 = "0j3n12jjy8cm0va8859wqra6abfyajrgh2qj8bhcngf3a72zl9ks"; + }; + + checkPhase = '' + py.test -k "not test_chunked_encoding" + ''; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [ flask decorator httpbin six requests ]; + + meta = { + description = "Easily test your HTTP library against a local copy of httpbin.org"; + homepage = https://github.com/kevin1024/pytest-httpbin; + license = lib.licenses.mit; + }; +} + diff --git a/pkgs/development/python-modules/pytest-xdist/default.nix b/pkgs/development/python-modules/pytest-xdist/default.nix new file mode 100644 index 00000000000..b3577908cf9 --- /dev/null +++ b/pkgs/development/python-modules/pytest-xdist/default.nix @@ -0,0 +1,33 @@ +{ stdenv, fetchPypi, buildPythonPackage, isPy3k, execnet, pytest, setuptools_scm }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "pytest-xdist"; + version = "1.16.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "42e5a1e5da9d7cff3e74b07f8692598382f95624f234ff7e00a3b1237e0feba2"; + }; + + buildInputs = [ pytest setuptools_scm ]; + propagatedBuildInputs = [ execnet ]; + + postPatch = '' + rm testing/acceptance_test.py testing/test_remote.py testing/test_slavemanage.py + ''; + + checkPhase = '' + py.test testing + ''; + + # Only test on 3.x + # INTERNALERROR> AttributeError: 'NoneType' object has no attribute 'getconsumer' + doCheck = isPy3k; + + meta = with stdenv.lib; { + description = "py.test xdist plugin for distributed testing and loop-on-failing modes"; + homepage = https://github.com/pytest-dev/pytest-xdist; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/pytest/default.nix b/pkgs/development/python-modules/pytest/default.nix index d3fea5a3b43..90b67022c5b 100644 --- a/pkgs/development/python-modules/pytest/default.nix +++ b/pkgs/development/python-modules/pytest/default.nix @@ -1,7 +1,7 @@ { stdenv, buildPythonPackage, fetchurl, isPy26, argparse, hypothesis, py }: buildPythonPackage rec { name = "pytest-${version}"; - version = "3.0.6"; + version = "3.0.7"; preCheck = '' # don't test bash builtins @@ -10,7 +10,7 @@ buildPythonPackage rec { src = fetchurl { url = "mirror://pypi/p/pytest/${name}.tar.gz"; - sha256 = "0h6rfp7y7c5mqwfm9fy5fq4l9idnp160c82ylcfjg251y6lk8d34"; + sha256 = "b70696ebd1a5e6b627e7e3ac1365a4bc60aaf3495e843c1e70448966c5224cab"; }; buildInputs = [ hypothesis ]; diff --git a/pkgs/development/python-modules/python-slugify/default.nix b/pkgs/development/python-modules/python-slugify/default.nix new file mode 100644 index 00000000000..03c37f7a6c4 --- /dev/null +++ b/pkgs/development/python-modules/python-slugify/default.nix @@ -0,0 +1,24 @@ +{ stdenv, fetchPypi, buildPythonPackage, unidecode, regex, isPy3k }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "python-slugify"; + version = "1.2.4"; + + src = fetchPypi { + inherit pname version; + sha256 = "097qllxys22kghcv2a5jcc1zdlr9zzqayvk6ywavsv8wgbgqb8sp"; + }; + doCheck = !isPy3k; + # (only) on python3 unittest loader (loadTestsFromModule) fails + + propagatedBuildInputs = [ unidecode regex ]; + + meta = with stdenv.lib; { + homepage = https://github.com/un33k/python-slugify; + description = "A Python Slugify application that handles Unicode"; + license = licenses.mit; + platforms = platforms.all; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/pytimeparse/default.nix b/pkgs/development/python-modules/pytimeparse/default.nix new file mode 100644 index 00000000000..ce5ff058664 --- /dev/null +++ b/pkgs/development/python-modules/pytimeparse/default.nix @@ -0,0 +1,21 @@ +{ stdenv, fetchPypi, buildPythonPackage, nose }: + +buildPythonPackage rec { + pname = "pytimeparse"; + version = "1.1.6"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "0imbb68i5n5fm704gv47if1blpxd4f8g16qmp5ar07cavgh2mibl"; + }; + + propagatedBuildInputs = [ nose ]; + + meta = with stdenv.lib; { + description = "A small Python library to parse various kinds of time expressions"; + homepage = "https://github.com/wroberts/pytimeparse"; + license = licenses.mit; + maintainers = with maintainers; [ vrthra ]; + }; +} diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix new file mode 100644 index 00000000000..b09458de568 --- /dev/null +++ b/pkgs/development/python-modules/qtconsole/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, isPy27 +, mock +, traitlets +, jupyter_core +, jupyter_client +, pygments +, ipykernel +, pyqt5 +}: + +buildPythonPackage rec { + pname = "qtconsole"; + version = "4.3.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "2821ccf85853b83e4958521f82e36325208787eaf79b19b83905a99cc41aa209"; + }; + + buildInputs = [ nose ] ++ lib.optionals isPy27 [mock]; + propagatedBuildInputs = [traitlets jupyter_core jupyter_client pygments ipykernel pyqt5]; + + # : cannot connect to X server + doCheck = false; + + meta = { + description = "Jupyter Qt console"; + homepage = http://jupyter.org/; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/rackspace-novaclient.nix b/pkgs/development/python-modules/rackspace-novaclient.nix index 0eaed7e36fd..144b61c9b9a 100644 --- a/pkgs/development/python-modules/rackspace-novaclient.nix +++ b/pkgs/development/python-modules/rackspace-novaclient.nix @@ -1,4 +1,4 @@ -{ buildPythonPackage, fetchurl, isPy3k, requests2, novaclient, six, lib }: +{ buildPythonPackage, fetchurl, isPy3k, requests, novaclient, six, lib }: let os-virtual-interfacesv2-python-novaclient-ext = buildPythonPackage rec { name = "os_virtual_interfacesv2_python_novaclient_ext-0.20"; @@ -129,7 +129,7 @@ buildPythonPackage rec { disabled = isPy3k; propagatedBuildInputs = [ - requests2 + requests novaclient six # extensions diff --git a/pkgs/development/python-modules/rarfile/default.nix b/pkgs/development/python-modules/rarfile/default.nix new file mode 100644 index 00000000000..7231da9d3d0 --- /dev/null +++ b/pkgs/development/python-modules/rarfile/default.nix @@ -0,0 +1,29 @@ +{ stdenv, buildPythonPackage, fetchFromGitHub, pytest, nose, unrar, glibcLocales }: + +buildPythonPackage rec { + name = "rarfile-${version}"; + version = "3.0"; + + src = fetchFromGitHub { + owner = "markokr"; + repo = "rarfile"; + rev = "rarfile_3_0"; + sha256 = "07yliz6p1bxzhipnrgz133gl8laic35gl4rqfay7f1vc384ch7sn"; + }; + buildInputs = [ pytest nose glibcLocales ]; + + prePatch = '' + substituteInPlace rarfile.py \ + --replace 'UNRAR_TOOL = "unrar"' "UNRAR_TOOL = \"${unrar}/bin/unrar\"" + ''; + LC_ALL = "en_US.UTF-8"; + checkPhase = '' + py.test test -k "not test_printdir" + ''; + + meta = with stdenv.lib; { + description = "RAR archive reader for Python"; + homepage = https://github.com/markokr/rarfile; + license = licenses.isc; + }; +} diff --git a/pkgs/development/python-modules/requests-oauthlib.nix b/pkgs/development/python-modules/requests-oauthlib.nix index a353ebd39d9..62ecf134b49 100644 --- a/pkgs/development/python-modules/requests-oauthlib.nix +++ b/pkgs/development/python-modules/requests-oauthlib.nix @@ -1,5 +1,5 @@ { stdenv, buildPythonPackage, fetchurl -, oauthlib, requests2 }: +, oauthlib, requests }: buildPythonPackage rec { version = "0.7.0"; @@ -11,7 +11,7 @@ buildPythonPackage rec { }; doCheck = false; # Internet tests fail when building in chroot - propagatedBuildInputs = [ oauthlib requests2 ]; + propagatedBuildInputs = [ oauthlib requests ]; meta = with stdenv.lib; { description = "OAuthlib authentication support for Requests"; diff --git a/pkgs/development/python-modules/rfc3986/default.nix b/pkgs/development/python-modules/rfc3986/default.nix new file mode 100644 index 00000000000..dde36e7592e --- /dev/null +++ b/pkgs/development/python-modules/rfc3986/default.nix @@ -0,0 +1,24 @@ +{ stdenv, buildPythonPackage, fetchPypi, + pytest }: + +buildPythonPackage rec { + pname = "rfc3986"; + version = "0.4.1"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "5ac85eb132fae7bbd811fa48d11984ae3104be30d44d397a351d004c633a68d2"; + }; + + buildInputs = [ pytest ]; + checkPhase = '' + py.test + ''; + + meta = with stdenv.lib; { + homepage = "https://rfc3986.readthedocs.org"; + license = licenses.asl20; + description = "Validating URI References per RFC 3986"; + }; +} diff --git a/pkgs/development/python-modules/scipy.nix b/pkgs/development/python-modules/scipy/default.nix index 023335a5e34..a7428f134a7 100644 --- a/pkgs/development/python-modules/scipy.nix +++ b/pkgs/development/python-modules/scipy/default.nix @@ -1,16 +1,17 @@ -{lib, python, buildPythonPackage, isPyPy, gfortran, nose}: +{lib, fetchurl, python, buildPythonPackage, isPyPy, gfortran, nose, numpy}: -args: +buildPythonPackage rec { + pname = "scipy"; + version = "0.19.0"; + name = "${pname}-${version}"; -let - inherit (args) version; - inherit (args) numpy; -in buildPythonPackage (args // rec { - - name = "scipy-${version}"; + src = fetchurl { + url = "mirror://pypi/s/scipy/scipy-${version}.zip"; + sha256 = "4190d34bf9a09626cd42100bbb12e3d96b2daf1a8a3244e991263eb693732122"; + }; - buildInputs = (args.buildInputs or [ gfortran nose ]); - propagatedBuildInputs = (args.propagatedBuildInputs or [ passthru.blas numpy]); + buildInputs = [ gfortran nose numpy.blas ]; + propagatedBuildInputs = [ numpy ]; # Remove tests because of broken wrapper prePatch = '' @@ -25,8 +26,8 @@ in buildPythonPackage (args // rec { echo "Creating site.cfg file..." cat << EOF > site.cfg [openblas] - include_dirs = ${passthru.blas}/include - library_dirs = ${passthru.blas}/lib + include_dirs = ${numpy.blas}/include + library_dirs = ${numpy.blas}/lib EOF ''; @@ -48,5 +49,5 @@ in buildPythonPackage (args // rec { description = "SciPy (pronounced 'Sigh Pie') is open-source software for mathematics, science, and engineering. "; homepage = http://www.scipy.org/; maintainers = with lib.maintainers; [ fridh ]; - } // (args.meta or {}); -}) + }; +} diff --git a/pkgs/development/python-modules/sqlalchemy-migrate/default.nix b/pkgs/development/python-modules/sqlalchemy-migrate/default.nix new file mode 100644 index 00000000000..11ed3a8d673 --- /dev/null +++ b/pkgs/development/python-modules/sqlalchemy-migrate/default.nix @@ -0,0 +1,34 @@ +{ stdenv, buildPythonPackage, fetchurl, python, + unittest2, scripttest, pytz, pylint, tempest-lib, mock, testtools, + pbr, tempita, decorator, sqlalchemy, six, sqlparse +}: +buildPythonPackage rec { + name = "sqlalchemy-migrate-${version}"; + version = "0.11.0"; + + src = fetchurl { + url = "mirror://pypi/s/sqlalchemy-migrate/${name}.tar.gz"; + sha256 = "0ld2bihp9kmf57ykgzrfgxs4j9kxlw79sgdj9sfn47snw3izb2p6"; + }; + + buildInputs = [ unittest2 scripttest pytz pylint tempest-lib mock testtools ]; + propagatedBuildInputs = [ pbr tempita decorator sqlalchemy six sqlparse ]; + + checkPhase = '' + export PATH=$PATH:$out/bin + echo sqlite:///__tmp__ > test_db.cfg + # depends on ibm_db_sa + rm migrate/tests/changeset/databases/test_ibmdb2.py + # wants very old testtools + rm migrate/tests/versioning/test_schema.py + # transient failures on py27 + substituteInPlace migrate/tests/versioning/test_util.py --replace "test_load_model" "noop" + ${python.interpreter} setup.py test + ''; + + meta = with stdenv.lib; { + homepage = http://code.google.com/p/sqlalchemy-migrate/; + description = "Schema migration tools for SQLAlchemy"; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/statsmodels/default.nix b/pkgs/development/python-modules/statsmodels/default.nix new file mode 100644 index 00000000000..60e35d2ade4 --- /dev/null +++ b/pkgs/development/python-modules/statsmodels/default.nix @@ -0,0 +1,33 @@ +{ lib +, self +, buildPythonPackage +, fetchPypi +, nose +, numpy +, scipy +, pandas +, patsy +, cython +, matplotlib +}: + +buildPythonPackage rec { + pname = "statsmodels"; + version = "0.8.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "26431ab706fbae896db7870a0892743bfbb9f5c83231644692166a31d2d86048"; + }; + + buildInputs = with self; [ nose ]; + propagatedBuildInputs = with self; [numpy scipy pandas patsy cython matplotlib]; + + meta = { + description = "Statistical computations and models for use with SciPy"; + homepage = "https://www.github.com/statsmodels/statsmodels"; + license = lib.licenses.bsd3; + maintainers = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/stevedore/default.nix b/pkgs/development/python-modules/stevedore/default.nix new file mode 100644 index 00000000000..c6ce6c0d922 --- /dev/null +++ b/pkgs/development/python-modules/stevedore/default.nix @@ -0,0 +1,23 @@ +{ stdenv, buildPythonPackage, fetchPypi, oslosphinx, pbr, six, argparse }: + +buildPythonPackage rec { + pname = "stevedore"; + version = "1.21.0"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "12sg88ax0lv2sxr685rqdaxm9gryjrpj4fvax459zvwy1r4n83ma"; + }; + + doCheck = false; + + buildInputs = [ oslosphinx ]; + propagatedBuildInputs = [ pbr six argparse ]; + + meta = with stdenv.lib; { + description = "Manage dynamic plugins for Python applications"; + homepage = "https://pypi.python.org/pypi/stevedore"; + license = licenses.asl20; + }; +} diff --git a/pkgs/development/python-modules/tables/default.nix b/pkgs/development/python-modules/tables/default.nix index e5de7c4e2a4..7faad8ec4f4 100644 --- a/pkgs/development/python-modules/tables/default.nix +++ b/pkgs/development/python-modules/tables/default.nix @@ -1,5 +1,5 @@ { stdenv, fetchurl, python, buildPythonPackage -, cython, bzip2, lzo, numpy, numexpr, hdf5, six }: +, cython, bzip2, lzo, numpy, numexpr, hdf5, six, c-blosc }: buildPythonPackage rec { version = "3.3.0"; @@ -10,7 +10,7 @@ buildPythonPackage rec { sha256 = "0b4211s0zzdmh74k49ss0m9lc2ql2iazq2aa95ams6h45vqcr0w3"; }; - buildInputs = [ hdf5 cython bzip2 lzo ]; + buildInputs = [ hdf5 cython bzip2 lzo c-blosc ]; propagatedBuildInputs = [ numpy numexpr six ]; # The setup script complains about missing run-paths, but they are @@ -19,6 +19,7 @@ buildPythonPackage rec { [ "--hdf5=${hdf5}" "--lzo=${lzo}" "--bzip2=${bzip2.dev}" + "--blosc=${c-blosc}" ]; # Run the test suite. diff --git a/pkgs/development/python-modules/tensorflow/default.nix b/pkgs/development/python-modules/tensorflow/default.nix index 04e820307a4..8946877eb14 100644 --- a/pkgs/development/python-modules/tensorflow/default.nix +++ b/pkgs/development/python-modules/tensorflow/default.nix @@ -11,6 +11,7 @@ , six , protobuf3_2 , swig +, werkzeug , mock , gcc , zlib @@ -31,7 +32,7 @@ assert ! (stdenv.isDarwin && cudaSupport); buildPythonPackage rec { pname = "tensorflow"; - version = "1.0.0"; + version = "1.1.0"; name = "${pname}-${version}"; format = "wheel"; disabled = ! (isPy35 || isPy27); @@ -49,31 +50,31 @@ buildPythonPackage rec { darwin.cpu = { py2 = { url = tfurl "mac" "cpu" "py2-none-any" ; - sha256 = "15ayil28p20wkgpwkr4mz0imjxnf049xx4117jspg1qkjg2bn1b2"; + sha256 = "1fgf26lw0liqxc9pywc8y2mj8l1mv48nhkav0pag9vavdacb9mqr"; }; py3 = { url = tfurl "mac" "cpu" "py3-none-any" ; - sha256 = "1ynyhbm7yrp421364s49a1r3p83zxy74iiy5c4hx2xm5c4gs29an"; + sha256 = "0z5p1fra7bih0vqn618i2w3vyy8d1rkc72k7bmjq0rw8msl717ia"; }; }; linux-x86_64.cpu = { py2 = { url = tfurl "linux" "cpu" "cp27-none-linux_x86_64"; - sha256 = "1hwhq1qhjrfkqfkxpsrq6mdmdibnqr3n7xvzkxp6gaqj73vn5ch2"; + sha256 = "0ld3hqx3idxk0zcrvn3p9yqnmx09zsj3mw66jlfw6fkv5hznx8j2"; }; py3 = { url = tfurl "linux" "cpu" "cp35-cp35m-linux_x86_64"; - sha256 = "0jx2mmlw0nxah9l25r46i7diqiv31qcz7855n250lsxfwcppy7y3"; + sha256 = "0ahz9222rzqrk43lb9w4m351klkm6mlnnvw8xfqip28vbmymw90b"; }; }; linux-x86_64.cuda = { py2 = { url = tfurl "linux" "gpu" "cp27-none-linux_x86_64"; - sha256 = "0l8f71x3ama5a6idj05jrswlmp4yg37fxhz8lx2xmgk14aszbcy5"; + sha256 = "1baa9jwr6f8f62dyx6isbw8yyrd0pi1dz1srjblfqsyk1x3pnfvh"; }; py3 = { url = tfurl "linux" "gpu" "cp35-cp35m-linux_x86_64"; - sha256 = "12q7s0yk0h3r4glh0fhl1fcdx7jl8xikwwp04a1lcagasr51s36m"; + sha256 = "0606m2awy0ifhniy8lsyhd0xc388dgrwksn87989xlgy90wpxi92"; }; }; }; @@ -96,7 +97,7 @@ buildPythonPackage rec { ); propagatedBuildInputs = with stdenv.lib; - [ numpy six protobuf3_2 swig mock ] + [ numpy six protobuf3_2 swig werkzeug mock ] ++ optionals cudaSupport [ cudatoolkit cudnn gcc49 ]; # Note that we need to run *after* the fixup phase because the @@ -121,6 +122,7 @@ buildPythonPackage rec { description = "TensorFlow helps the tensors flow"; homepage = http://tensorflow.org; license = licenses.asl20; + maintainers = with maintainers; [ jpbernardy ]; platforms = with platforms; if cudaSupport then linux else linux ++ darwin; }; } diff --git a/pkgs/development/python-modules/tqdm/default.nix b/pkgs/development/python-modules/tqdm/default.nix new file mode 100644 index 00000000000..6a0dd6a3655 --- /dev/null +++ b/pkgs/development/python-modules/tqdm/default.nix @@ -0,0 +1,32 @@ +{ lib +, buildPythonPackage +, fetchPypi +, nose +, coverage +, glibcLocales +, flake8 +, matplotlib +, pandas +}: + +buildPythonPackage rec { + pname = "tqdm"; + version = "4.11.2"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "14baa7a9ea7723d46f60de5f8c6f20e840baa7e3e193bf0d9ec5fe9103a15254"; + }; + + buildInputs = [ nose coverage glibcLocales flake8 ]; + + LC_ALL="en_US.UTF-8"; + + meta = { + description = "A Fast, Extensible Progress Meter"; + homepage = https://github.com/tqdm/tqdm; + license = with lib.licenses; [ mit ]; + maintainers = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/treq/default.nix b/pkgs/development/python-modules/treq/default.nix index 37f9e3324c7..14a2ac9cb92 100644 --- a/pkgs/development/python-modules/treq/default.nix +++ b/pkgs/development/python-modules/treq/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, buildPythonPackage, service-identity, requests2, +{ stdenv, fetchurl, buildPythonPackage, service-identity, requests, six, mock, twisted, incremental, coreutils, gnumake, pep8, sphinx, openssl, pyopenssl }: @@ -19,7 +19,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ service-identity - requests2 + requests twisted incremental sphinx diff --git a/pkgs/development/python-modules/twisted/default.nix b/pkgs/development/python-modules/twisted/default.nix new file mode 100644 index 00000000000..0cfb00c48b8 --- /dev/null +++ b/pkgs/development/python-modules/twisted/default.nix @@ -0,0 +1,45 @@ +{ stdenv, buildPythonPackage, fetchurl, python, + zope_interface, incremental, automat, constantly +}: +buildPythonPackage rec { + + name = "Twisted-${version}"; + version = "17.1.0"; + + src = fetchurl { + url = "mirror://pypi/T/Twisted/${name}.tar.bz2"; + sha256 = "1p245mg15hkxp7hy5cyq2fgvlgjkb4cg0gwkwd148nzy1bbi3wnv"; + }; + + propagatedBuildInputs = [ zope_interface incremental automat constantly ]; + + # Patch t.p._inotify to point to libc. Without this, + # twisted.python.runtime.platform.supportsINotify() == False + patchPhase = stdenv.lib.optionalString stdenv.isLinux '' + substituteInPlace src/twisted/python/_inotify.py --replace \ + "ctypes.util.find_library('c')" "'${stdenv.glibc.out}/lib/libc.so.6'" + ''; + + # Generate Twisted's plug-in cache. Twisted users must do it as well. See + # http://twistedmatrix.com/documents/current/core/howto/plugin.html#auto3 + # and http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=477103 for + # details. + postInstall = "$out/bin/twistd --help > /dev/null"; + + checkPhase = '' + ${python.interpreter} -m unittest discover -s twisted/test + ''; + # Tests require network + doCheck = false; + + meta = with stdenv.lib; { + homepage = http://twistedmatrix.com/; + description = "Twisted, an event-driven networking engine written in Python"; + longDescription = '' + Twisted is an event-driven networking engine written in Python + and licensed under the MIT license. + ''; + license = licenses.mit; + maintainers = [ ]; + }; +} diff --git a/pkgs/development/python-modules/txaio/default.nix b/pkgs/development/python-modules/txaio/default.nix new file mode 100644 index 00000000000..66b01d61094 --- /dev/null +++ b/pkgs/development/python-modules/txaio/default.nix @@ -0,0 +1,28 @@ +{ stdenv, buildPythonPackage, fetchurl, + pytest, mock, six, twisted +}: +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "txaio"; + version = "2.7.0"; + + buildInputs = [ pytest mock ]; + propagatedBuildInputs = [ six twisted ]; + + checkPhase = '' + py.test -k "not test_sdist" + ''; + + src = fetchurl { + url = "mirror://pypi/t/${pname}/${name}.tar.gz"; + sha256 = "0hwd6jx6hb44p40id9r0m42y07rav5jvddf0f1bcm269i3dnwr47"; + }; + + meta = with stdenv.lib; { + description = "Utilities to support code that runs unmodified on Twisted and asyncio."; + homepage = "https://github.com/crossbario/txaio"; + license = licenses.mit; + maintainers = with maintainers; [ nand0p ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/python-modules/vcrpy/default.nix b/pkgs/development/python-modules/vcrpy/default.nix new file mode 100644 index 00000000000..c82a02cb4a4 --- /dev/null +++ b/pkgs/development/python-modules/vcrpy/default.nix @@ -0,0 +1,50 @@ +{ buildPythonPackage +, lib +, six +, fetchPypi +, pyyaml +, mock +, contextlib2 +, wrapt +, pytest +, httpbin +, pytest-httpbin +, yarl +, pythonOlder +, pythonAtLeast +}: + +buildPythonPackage rec { + pname = "vcrpy"; + version = "1.10.5"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "12kncg6jyvj15mi8ca74514f2x1ih753nhyz769nwvh39r468167"; + }; + + checkInputs = [ + pytest + pytest-httpbin + ]; + + propagatedBuildInputs = [ + pyyaml + wrapt + six + ] + ++ lib.optionals (pythonOlder "3.3") [ contextlib2 mock ] + ++ lib.optionals (pythonAtLeast "3.4") [ yarl ]; + + checkPhase = '' + py.test --ignore=tests/integration -k "not TestVCRConnection" + ''; + + meta = with lib; { + description = "Automatically mock your HTTP interactions to simplify and speed up testing"; + homepage = https://github.com/kevin1024/vcrpy; + license = licenses.mit; + }; +} + diff --git a/pkgs/development/python-modules/whoosh/default.nix b/pkgs/development/python-modules/whoosh/default.nix new file mode 100644 index 00000000000..7e2a571b1bb --- /dev/null +++ b/pkgs/development/python-modules/whoosh/default.nix @@ -0,0 +1,30 @@ +{ stdenv, buildPythonPackage, fetchPypi, pytest }: + +buildPythonPackage rec { + name = "${pname}-${version}"; + pname = "Whoosh"; + version = "2.7.4"; + src = fetchPypi { + inherit pname version; + sha256 = "10qsqdjpbc85fykc1vgcs8xwbgn4l2l52c8d83xf1q59pwyn79bw"; + }; + buildInputs = [ pytest ]; + + # Wrong encoding + postPatch = '' + rm tests/test_reading.py + ''; + checkPhase = '' + # FIXME: test_minimize_dfa fails on python 3.6 + py.test -k "not test_timelimit and not test_minimize_dfa" + ''; + + meta = with stdenv.lib; { + description = "Fast, pure-Python full text indexing, search, and spell +checking library."; + homepage = "http://bitbucket.org/mchaput/whoosh"; + license = licenses.bsd2; + maintainers = with maintainers; [ nand0p ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/python-modules/widgetsnbextension/default.nix b/pkgs/development/python-modules/widgetsnbextension/default.nix new file mode 100644 index 00000000000..dda58c65f60 --- /dev/null +++ b/pkgs/development/python-modules/widgetsnbextension/default.nix @@ -0,0 +1,29 @@ +{ lib +, buildPythonPackage +, fetchPypi +, notebook +, ipywidgets +}: + +buildPythonPackage rec { + pname = "widgetsnbextension"; + name = "${pname}-${version}"; + version = "2.0.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "566582a84642d0c0f78b756a954450a38a8743eeb8dad04b7cab3ca66f455e6f"; + }; + + propagatedBuildInputs = [ notebook ]; + + # No tests in archive + doCheck = false; + + meta = { + description = "IPython HTML widgets for Jupyter"; + homepage = http://ipython.org/; + license = ipywidgets.meta.license; # Build from same repo + maintainers = with lib.maintainers; [ fridh ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/python-modules/wxPython/3.0.nix b/pkgs/development/python-modules/wxPython/3.0.nix index defdc920d6e..14f6f802ba2 100644 --- a/pkgs/development/python-modules/wxPython/3.0.nix +++ b/pkgs/development/python-modules/wxPython/3.0.nix @@ -12,6 +12,8 @@ , isPy3k , isPyPy , python +, cairo +, pango }: assert wxGTK.unicode; @@ -43,6 +45,15 @@ buildPythonPackage rec { # this check is supposed to only return false on older systems running non-framework python substituteInPlace src/osx_cocoa/_core_wrap.cpp \ --replace "return wxPyTestDisplayAvailable();" "return true;" + '' + lib.optionalString (!stdenv.isDarwin) '' + substituteInPlace wx/lib/wxcairo.py \ + --replace 'cairoLib = None' 'cairoLib = ctypes.CDLL("${cairo}/lib/libcairo.so")' + substituteInPlace wx/lib/wxcairo.py \ + --replace '_dlls = dict()' '_dlls = {k: ctypes.CDLL(v) for k, v in [ + ("gdk", "${wxGTK.gtk}/lib/libgtk-x11-2.0.so"), + ("pangocairo", "${pango.out}/lib/libpangocairo-1.0.so"), + ("appsvc", None) + ]}' ''; NIX_LDFLAGS = lib.optionalString (!stdenv.isDarwin) "-lX11 -lgdk-x11-2.0"; diff --git a/pkgs/development/python-modules/xarray/default.nix b/pkgs/development/python-modules/xarray/default.nix new file mode 100644 index 00000000000..fe0497bc0e8 --- /dev/null +++ b/pkgs/development/python-modules/xarray/default.nix @@ -0,0 +1,33 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytest +, numpy +, pandas +, python +}: + +buildPythonPackage rec { + pname = "xarray"; + version = "0.9.5"; + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "d23bfcc317829570daa1fe8306ad7ff62cd77847bbd68e3ffc53d847bff7c36d"; + }; + + buildInputs = [ pytest ]; + propagatedBuildInputs = [numpy pandas]; + + checkPhase = '' + py.test $out/${python.sitePackages} + ''; + + meta = { + description = "N-D labeled arrays and datasets in Python"; + homepage = https://github.com/pydata/xarray; + license = lib.licenses.asl20; + maintainers = with lib.maintainers; [ fridh ]; + }; +} diff --git a/pkgs/development/python-modules/zxcvbn-python/default.nix b/pkgs/development/python-modules/zxcvbn-python/default.nix new file mode 100644 index 00000000000..65d343cbec9 --- /dev/null +++ b/pkgs/development/python-modules/zxcvbn-python/default.nix @@ -0,0 +1,25 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "zxcvbn-python"; + version = "4.4.14"; + + name = "${pname}-${version}"; + + src = fetchPypi { + inherit pname version; + sha256 = "fd3a46536035851571e3f4142b64d6e7bcf0ade3cd40d8fecae7a1243945e327"; + }; + + # No tests in archive + doCheck = false; + + meta = { + description = "Python implementation of Dropbox's realistic password strength estimator, zxcvbn"; + homepage = https://github.com/dwolfhub/zxcvbn-python; + license = with lib.licenses; [ mit ]; + }; +} \ No newline at end of file diff --git a/pkgs/development/r-modules/README.md b/pkgs/development/r-modules/README.md index 5aa839b3b5a..477059cbb2c 100644 --- a/pkgs/development/r-modules/README.md +++ b/pkgs/development/r-modules/README.md @@ -12,7 +12,7 @@ use by adding the following snippet to your $HOME/.config/nixpkgs/config.nix fil { rEnv = super.rWrapper.override { - packages = with self.rPackages; [ + packages = with self.rPackages; [ devtools ggplot2 reshape2 @@ -55,28 +55,23 @@ available. ## RStudio -RStudio by default will not use the libraries installed like above. -You must override its R version with your custom R environment, and -set `useRPackages` to `true`, like below: +RStudio uses a standard set of packages and ignores any custom R +environments or installed packages you may have. To create a custom +environment, see `rstudioWrapper`, which functions similarly to +`rWrapper`: ```nix { packageOverrides = super: let self = super.pkgs; in { - rEnv = super.rWrapper.override { - packages = with self.rPackages; [ - devtools + rstudioEnv = super.rstudioWrapper.override { + packages = with self.rPackages; [ + dplyr ggplot2 reshape2 - yaml - optparse ]; }; - rstudioEnv = super.rstudio.override { - R = rEnv; - useRPackages = true; - }; }; } ``` @@ -106,4 +101,3 @@ nix-build test-evaluation.nix --dry-run ``` If this exits fine, the expression is ok. If not, you have to edit `default.nix` - diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 7d5db5a744a..a5bfe4ccea0 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,1217 +4,1297 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { rVersion = "3.3"; }; +let derive2 = derive { rVersion = "3.4"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.2.2"; sha256="1jb88iwgp80i3ir1509chr7cjrjvk92a2d5hcdyl0vg9b0qxymbj"; depends=[ABAData gplots Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.8.1"; sha256="099z80h097sf0slj3m29nfdmn1a5p3b0c7sgh1wfnm6dg6y7g26k"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.40.0"; sha256="1qylnf9x8hihc9g64xpcb6jrphysmlg61aa14jd3afjak3xh52g4"; depends=[Biobase multtest]; }; - ACME = derive2 { name="ACME"; version="2.28.0"; sha256="0l56y211r9i50gksv7bm7jzdpk8b3dmc83vkpd5xfnbigdfn7al4"; depends=[Biobase BiocGenerics]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.12.0"; sha256="0ndgqrg0d02yx9ykgqss9n21dfmldfmgx1hpfj9bmsblyf074gxm"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.20.0"; sha256="0j1n9r8xagb5wrwhs7sdmvzg2vz9nwl9rf3214kq87hgwbkqn64m"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.4.0"; sha256="1sq9gwsmvrq4fdhh5p9wwrikrhgpzw5pv07ncvmirpkhh0qi50l6"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.4.0"; sha256="0vhsfa7asfd8rwvi9z1g0wjsx91dldfhisa6a447wahb7m73cs4y"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.12.0"; sha256="1y79fll7jxw8h80h0zld0ys4an23f0f86phl8r40kbxlk002mpsq"; depends=[ARRmData]; }; - ASEB = derive2 { name="ASEB"; version="1.16.0"; sha256="0g2qsmqmsk1ka4mvf2qkh9pxdi0xm1n7csqhwsfbmlmv3za0zkdy"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.6.0"; sha256="0y1gq5xii5p5m0x19xmbs00hlc68zgw7nqnpxkk3jf8g995gvsvb"; depends=[MASS Matrix]; }; - ASSET = derive2 { name="ASSET"; version="1.10.0"; sha256="0yb1ps4cwb36zr6f3na3wp6v6l0wi1x1hqck4irzpwmlh7vazkqj"; depends=[MASS msm mvtnorm rmeta tmvnsim]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.8.0"; sha256="18pdw43ibbhqf25z1vcm34gpyxwxm96d28clqp8grq50zr60n9ii"; depends=[gplots msm Rlab]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.32.0"; sha256="15cg6jbmn7fq89cmmfkwykmxqrz8fvq59ip691ai93n18js8hzwf"; depends=[Biostrings RCurl XML]; }; - AffyExpress = derive2 { name="AffyExpress"; version="1.38.0"; sha256="1kq17y9864d94pvpw9hvrrl8s8fh9c7sd6cf4cykzj34729k6xm1"; depends=[affy limma]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.18.0"; sha256="1p8j3286ix36sckzrw726q7nsxivcgxggkmp76vmrd6l0a67bz75"; depends=[affy]; }; - AffyTiling = derive2 { name="AffyTiling"; version="1.29.0"; sha256="0s5hrlzzxpyw52lpp7xq7vd5wds5ymph2gav4mhbbplvism7wnjz"; depends=[affxparser affy preprocessCore]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.22.0"; sha256="1fkl1rnj9pj654pdjfs2k6r74yvpbm331gf9cdcsq3baafygv48z"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.10.2"; sha256="09p2z1vh7hq7fkfz49n7c8yfsji66p6dry5dmi6b6gm22fj5q7f2"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.6.2"; sha256="0fws4b2cln0i9fn5cnvggjk86y2mcbzvd1r5gfs8idjsm79mzaxn"; depends=[Biobase graph log4r rjson]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.0.3"; sha256="1a0kaxd65r9453cx8jw5y2zvybqxjlyw68x3vn0kvgz6pv84dwq1"; depends=[AneuFinderData BiocGenerics Biostrings cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 IRanges mclust preseqR ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.34.4"; sha256="1k3gfsjrivc7467vg0h705hh4dvzgdhknz62j7zmfxm67qk9r8rq"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.14.2"; sha256="1vkdd1qdv5g680ipw4vwjvn52xn66xpg6ngmwyknz77ckxnnpf4q"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors XML]; }; - AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.22.0"; sha256="1mc2y5ra8cmbmr10vnywx4hjdklrq3ihwl9m11g2vaqylwy7gh1c"; depends=[AnnotationDbi DBI]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="2.4.2"; sha256="1jjl1q5wgwfjhrm96c7wh0w8dpaxzqy9wjisy3pmg483vg0960y4"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.2.2"; sha256="1h9qljbyjg2qgxx9knwwyfiy0kw7wp2k281hxzq66c24idp3kkrl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings curl DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.32.0"; sha256="08fcvhjmpr1fx90qyik12hc3yb3v6i4bvx62xadxm3m2zq52nmgl"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.22.1"; sha256="1p5flrkb8xwhw51fjr8zm27qgzm5v10s4kccjajiykiv0v301snh"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - ArrayTV = derive2 { name="ArrayTV"; version="1.10.0"; sha256="0vh53xlg4yidmk39rxa0nw2cr12f6mld1vwiq6jba5j51szqm0aw"; depends=[DNAcopy foreach oligoClasses S4Vectors]; }; - ArrayTools = derive2 { name="ArrayTools"; version="1.32.0"; sha256="09cqab10xh052d0932p2y3svspn9lqi1zylkm7kglkksn7j27vih"; depends=[affy Biobase limma xtable]; }; - AtlasRDF = derive2 { name="AtlasRDF"; version="1.8.0"; sha256="1hw5i074cxkwqi4gkb3abqvl9q3wz93s5fvym28id63qsmpdssl9"; depends=[hash SPARQL]; }; - BAC = derive2 { name="BAC"; version="1.32.0"; sha256="07f8vcbdqlq4i0b6xqrlf6fr3zj8kbbjssc3pf9gy2s0kf1da6p0"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.10.0"; sha256="1ibcchi6qgd49m4kjz3dx8nc31nkg5bjw8g5w5ih05pki0gl4219"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.12.0"; sha256="1krnkamjxk71lxmm1n1zg8c2agv4w0xksz3gngpjjgzcybfnnn2i"; depends=[Biobase breastCancerVDX]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.2.0"; sha256="0q8kj2gp0j6xrmgq1zd1230hddiy139qrdrz64m2nab5avn1fmlm"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.34.0"; sha256="0y6dj26qd6a3jm7lp0jcdkpvdc4jq3gp11mvv1ix724zasb57k3d"; depends=[Biostrings]; }; - BEAT = derive2 { name="BEAT"; version="1.10.0"; sha256="0v7hl5v84bn2iik89j4wsq9vnnr392n4h2x2n8x9fdips2bjpq3w"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="1.4.0"; sha256="17p4g4gh6vnnymsrhfh1xhjj4ahm0dilapnlh4mf883x9q8acbda"; depends=[Matrix snowfall]; }; - BGmix = derive2 { name="BGmix"; version="1.32.0"; sha256="1z0i0h43din2659yzzjx10bzmbak5nwrbgnab4ifq8hq6sgxyzg2"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.24.0"; sha256="0v906vnh5ph1srr1s5i4cbplkyqfim6fmxn0wp290jb0ilkp3ziv"; depends=[]; }; - BRAIN = derive2 { name="BRAIN"; version="1.18.0"; sha256="0iwz6yy164hwy1mqa869y6d1qs69ijx566dfff8mj0ym655pd3rz"; depends=[Biostrings lattice PolynomF]; }; - BSgenome = derive2 { name="BSgenome"; version="1.40.1"; sha256="0zmlzlcwairka59is5wmkh6knh6j4d328z9fsw3v91fx6gavjl2n"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; - BUS = derive2 { name="BUS"; version="1.28.0"; sha256="1z8l27rsz6zz8d0sga5pwn77iv5pwjgy3zjm8rcc6w3ql86za5m3"; depends=[infotheo minet]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.0.0"; sha256="1rxncqjv7bw4f17ra00cq1xp9g72mlj1wc335g5ln7778wiax1g9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.16.0"; sha256="1w1n9m5j9mcphvhsdj7dh8awvj1r10zna7dx13b2f280jmglg215"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.8.0"; sha256="0216xhqj4ysscj4lr66vibijrac7kmkmxnqsqcwwxwzqsrk5gh7z"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.0.2"; sha256="1ryarcvb9cpmgc3yzd7qck46ff2xc417dhnfiwma3gy3gm2g4lyi"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.0.22"; sha256="18c675pnah7xc089ny6h8zf4150d9f3ayf5wyxji0zdkvk2gnxjv"; depends=[corpcor d3heatmap ggvis gplots knitr limma matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesPeak = derive2 { name="BayesPeak"; version="1.24.0"; sha256="1m8c6akdi4mw1aj6482s9x8918m2a3d58s0fvvhpwzcppz7yjw33"; depends=[IRanges]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.24.2"; sha256="04jviwwx4brbv19kzzw69vjqhprl8sgsghw71gxmp91c6i1pv5a2"; depends=[]; }; - BgeeDB = derive2 { name="BgeeDB"; version="1.0.3"; sha256="0g84hyirg3blbk6vxwjazgvpqzn384i6i01r7fxyqfdyfczprsfp"; depends=[Biobase data_table dplyr graph RCurl tidyr topGO]; }; - BiGGR = derive2 { name="BiGGR"; version="1.8.0"; sha256="15ffri2xdjwqxf7mn6mxk5h9c7m0xkq2di6nlvdwvapwm9945ldq"; depends=[hyperdraw hypergraph LIM rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.2.1"; sha256="0y32y9vfs1sh7lwpkzpsmvgrll3x5l7y8xm3rcxalag17lkfax65"; depends=[igraph Matrix slam tsne]; }; - BiSeq = derive2 { name="BiSeq"; version="1.12.0"; sha256="14gr8dmkpm2wzdwlhrf9gkj9307cxpsap7a0a6bfip2zgrp82414"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.30.0"; sha256="0faq2w40ikgrzcf39908icb0kph9sxbrplh86m12xwjwsbfwys47"; depends=[Biobase GSEABase multtest]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.40.0"; sha256="1249q8qpnva9a1wh1q8mi0x2yggbg5kmfkcv75wdbzmc82hkck42"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNet = derive2 { name="BioNet"; version="1.32.0"; sha256="0zrfdlqfy18zk6z8a3slg8ksywknjbywr5r90ksyfqmvd869ick2"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioQC = derive2 { name="BioQC"; version="1.0.0"; sha256="0zqpdfdjlsfm203kva8jfv09rwdwmr47daz1zjj06p1m82bwhg1v"; depends=[Biobase Rcpp]; }; - BioSeqClass = derive2 { name="BioSeqClass"; version="1.30.0"; sha256="1gcy27f9jim5b5q7979pz5m9rbphij0cln4mhvzwmkdwvi2ddyj8"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; - Biobase = derive2 { name="Biobase"; version="2.32.0"; sha256="0q4icv9n5rc2qfkv6k1wjhmfcpzcyr8f45m2z3xharbdv912kl1i"; depends=[BiocGenerics]; }; - BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.34.0"; sha256="1g4307x962ccvxdb421n3cksrrydglmp0hjhwlqlvfyddmkxmym0"; depends=[Biobase]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.8.2"; sha256="0bvkhxmr25nb0gkncifbc3x48i5zgls3737g3xais6jx16wd4q35"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.18.0"; sha256="1jjp48vbph09w5bmc7368gjjywsa1lmzfybpiwlypr60b51vlkp6"; depends=[]; }; - BiocInstaller = derive2 { name="BiocInstaller"; version="1.22.3"; sha256="02qkfq6f2b7v9klri6d1nv21r54bywv1zd5x47ka0jhhp946cqpr"; depends=[]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.6.6"; sha256="1l39zmvhjlvlczrk5wal4y2s4g0b2kmaczgq5biah9qn45y474mw"; depends=[futile_logger snow]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.0.3"; sha256="06aaj0snj0y3bhhfh7lr949fi6cg7gz6fwf5drdm10ckbs4zp9dk"; depends=[]; }; - Biostrings = derive2 { name="Biostrings"; version="2.40.2"; sha256="153rfws5sdha324p1nv7jp75ip6ny0f62jzhqcvs46l85h3i8zgh"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.16.0"; sha256="1w585sk92053pwhw1h1qd421rr7s42cm8l8b6mm9cdvrf9095p9r"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; - BrainStars = derive2 { name="BrainStars"; version="1.16.0"; sha256="0y6l0c17xlm8q3nbhy21bk2mrbb0a660x6h19q14x01jm58gxwis"; depends=[Biobase RCurl RJSONIO]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="1.6.0"; sha256="0i5cqyvgyk9yjd8sc8mqrbw0dvkr24hkzlwvw3dn1zk553nwyg98"; depends=[RCurl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="1.4.0"; sha256="15j9cz4x9azn81myjnhckcil24ql3lbf83dfyl33qndszi9aqin4"; depends=[BiocGenerics httpuv jsonlite]; }; - BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.4.0"; sha256="1krl88q9z7y2f25p8c9ghr9iyrldgw64xa5za6dv35d7aiihgr9s"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.2.2"; sha256="1gg1qxvs930lq7f2awpgmfq455306snzvyp4qxx1cm25yklvc0h6"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr rainbow RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.36.0"; sha256="19yxbw4g4l1gmn14yrr8lmd627f4br5gkgzxpif21gmjvq2iaal1"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.36.0"; sha256="00jwgdk1y8is5256q664ph9rhsm4n1pqzrzrbabf9ahq2cm75f96"; depends=[BufferedMatrix]; }; - CAFE = derive2 { name="CAFE"; version="1.8.0"; sha256="13lf4xm55qr8knjh644gb9a610lxxn8b97lkcprjv4n7pbc4vqxp"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEr = derive2 { name="CAGEr"; version="1.14.0"; sha256="14fkr47hq97wh6a9ig4k4gnybzwvcgf61yqqay4wma0aqi07cd3l"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; - CALIB = derive2 { name="CALIB"; version="1.38.0"; sha256="1fb5w9bhwd9n818mrahbv2i6bllgzq2lslzkcybyp3llbrckbigy"; depends=[limma]; }; - CAMERA = derive2 { name="CAMERA"; version="1.28.0"; sha256="02shq9gh2zpj2vkpzyslqzqa5q68lzz6hr07pklj5qldyvgxma52"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CAnD = derive2 { name="CAnD"; version="1.4.0"; sha256="1hmyi76bhjihj7313f9jxcpnmpzs8r59s2prc2in4p1xmj2v26ha"; depends=[ggplot2 reshape]; }; - CFAssay = derive2 { name="CFAssay"; version="1.6.0"; sha256="1ni4hss9m2i8cxjnsslp0s2rlpikd78w3c0x1590l0pqki5kbgbq"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.8.0"; sha256="1zandlkv5fnm4zk6xpakpqbadrc9bgd73716rlwmlxrqqbqhqzdb"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.32.0"; sha256="1v4h2zlfrb45y80skl3f2hqnzz8gk1k387m7sz2izx33dwfxgdpd"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.34.1"; sha256="0vpvlddkihsvhr03m6kvn72p3dl2qd9ncr46va05hrvhgqxr976k"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.26.0"; sha256="033ckmn74zhmmy3fi8sbrvb2zzxyzwzmkdyal7djm63rf8f52km1"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.30.0"; sha256="1lglc0wglckc6c24yzjjc9l86p7i37ag837n75d0h4lv8x1yfzik"; depends=[Biobase CGHbase]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.0.3"; sha256="1a87shlr88i0ampzayybpnhmzd9k9j05fylb2q6n4ykk1igq5mdy"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; - CINdex = derive2 { name="CINdex"; version="1.0.2"; sha256="1f2gqfj88dlihqw0ba24sygcg7sr7pm91hv7s2jylys3r1013r0f"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.30.0"; sha256="03yirnn476as8ml97valczx2ad6a2g22mfp4czg1a3kblw4s3r3k"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.18.0"; sha256="0wi76k3qz5zvhqyhx2zabw7baj1pyzi0srynbdws3zdcc2qaks57"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.8.3"; sha256="169pbzm6k1kqy5214s7ka5snmbz98zi515nfjki2crnvr1fjjgxb"; depends=[BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges readr RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.14.0"; sha256="0gp0fb1rqjlcxf3sa1miq5abzcmqnpnp62lmb88a6ljkisi2hqnq"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.12.0"; sha256="19yggabd3m5afd1lbivhqninfif4ra88nlf3kv4qi6ixvbp685km"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.14.0"; sha256="052hb464pq3sr513rmn8i12mz6xczfaqd9fax6djfwwdzprva315"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.14.0"; sha256="07xyqd51pz7ygvya4pvqpapglj82w4fwmra7c7r1yny7lcq7ylh6"; depends=[CellNOptR genalg]; }; - CNPBayes = derive2 { name="CNPBayes"; version="1.2.2"; sha256="1r1spk29zy7sc9kgyh1r2s7awc3hh5rl2c1p5chhik39lpdvmnbs"; depends=[BiocGenerics coda combinat GenomeInfoDb GenomicRanges gtools IRanges matrixStats RColorBrewer Rcpp S4Vectors SummarizedExperiment]; }; - CNTools = derive2 { name="CNTools"; version="1.28.0"; sha256="1iwgcphdcd5hxb4a61s30lgdp10s0435vkjz6cvhriimwq0bia4z"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.2.2"; sha256="1mcdyib8gbg4w9m3r437z3a1az249pgad0db2w9cjk78hblxsi8d"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq openxlsx plyr Rsamtools S4Vectors]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.10.2"; sha256="1r0fjb6br699rkkqpkpwi8s8bk9gv5lgck4xfgbydjllbbvmiq35"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - CNVtools = derive2 { name="CNVtools"; version="1.66.0"; sha256="1v6y0j20d306snr3r8zrvk574ybcyg00pjxjya09r6srmci2bz74"; depends=[survival]; }; - CODEX = derive2 { name="CODEX"; version="1.4.0"; sha256="0cjfnryzxxhmhcbwsf34509b7srgxzlv4barrh8h8dyq2wfzzrqp"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools]; }; - COHCAP = derive2 { name="COHCAP"; version="1.10.0"; sha256="0qdwd7igd2aaqbwl5lpfrzw9qilz651b1p88794qmxwih7lmd6s5"; depends=[COHCAPanno WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.10.2"; sha256="1y9r6d9gd1fbvmxi3cvxcmz2b3n9gbncw6p2s8gjdzqj7i0nar7x"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; }; - CONFESS = derive2 { name="CONFESS"; version="1.0.2"; sha256="0xc8bns00980fwxdpbx48r6h7pddv2jiplw38svmsv497zcb2mny"; depends=[changepoint cluster contrast EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CORREP = derive2 { name="CORREP"; version="1.38.0"; sha256="16zhb5ajkh10azb2mkjbq6hmf6vqvxz3bzm4q424ir4azfqrd3qs"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.6.0"; sha256="16gfbz6i5kmi8msgs0n5igybxz9kd4qyqv3p2dhr6n5nxzcqlhfw"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.12.0"; sha256="0kl20amakkyl3296zbfifi669ajm6i9x4hslav20ibzykgdwkscc"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; - CRImage = derive2 { name="CRImage"; version="1.20.0"; sha256="0061qhplzjwhdyqa1m4jzwfmpjlc24a87b5z3p7yr2vrihp66n7y"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.24.0"; sha256="1m48njl4w0x7dyxqsfpflchclwy8nj07ldwckkh6522zdqmijb46"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.10.0"; sha256="0p2zs1ny4khmdpnbma53npb1lh4d8fh7szp2g8xhnilvmj744y1q"; depends=[]; }; - CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.14.0"; sha256="13nivw19hqaglg3v6pmqshwy2gnfjvigciw3wpl2791a22iaimn2"; depends=[AnnotationDbi limma qvalue]; }; - Cardinal = derive2 { name="Cardinal"; version="1.4.0"; sha256="0b4yb6sf27by2cjqy6cr4qrzs5ms83h210m1777vy33c7l4idlc7"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; }; - Category = derive2 { name="Category"; version="2.38.0"; sha256="0c8px9ar589f3iqkbk9vfhwj30dpnxj81h8sfq20cl1cbmcx2a04"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL RSQLite]; }; - CausalR = derive2 { name="CausalR"; version="1.4.3"; sha256="0307k6wnhar675l25xvwi0h97x6jpi64a5y874h8gqm2a5f0ybyl"; depends=[igraph]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.18.0"; sha256="0vqjyjn2248mpc1lc4p4sivf1lhvjiwvgyi0jifm9as2yqz2np7k"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; - CexoR = derive2 { name="CexoR"; version="1.10.0"; sha256="0g2ln2l3vlp86zymyf2bdlc3g2piwv65vaxb7w7wd8ngp06zqais"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="1.10.0"; sha256="168z9lgfmhmymflfiml8g8kq6v695r94sfjhcng8wjkjn8dfbz6x"; depends=[bumphunter ChAMPdata DNAcopy doParallel GenomicRanges Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest impute isva limma marray minfi plyr preprocessCore quadprog qvalue RefFreeEWAS RPMM sva wateRmelon]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.2.0"; sha256="1l120wiq8xmvxa513vy4vgz34ddbh870djr776yvlcsrapxdl2iz"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.8.9"; sha256="1d3rm2shs2f66dahllspb4sgnqzkds6ds0b1pp6jnrzkqhw07s5h"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.14.0"; sha256="1ilqkx21jsvj3x0im4fgp4kacspynqn234pjj6vpsx1981lvavxy"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.6.5"; sha256="0mncyh1ixsp4ngpc8flmkq1czi1kkgcy14ws556rymkx02v3c9pc"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR S4Vectors seqinr SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.8.9"; sha256="0c2sm9zs377iq9fhpqlmqkfxxldww97yd0p1isbvmzz4m8j81nqb"; depends=[AnnotationDbi BiocGenerics boot DOSE dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.26.0"; sha256="14c4hyzj19c4r8s74zfpkslv0nswmb2pqf0pihn43hycn1z9dhfi"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.26.0"; sha256="0b992sv8xrrafrj30bmgmy1p7zb5qdw5kyjm23bmnk7jd9fck382"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.10.2"; sha256="0jxnlwprn8r8mwqgkij6r4xrh94rxx8l44h1x3scplkphdwslxbk"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="2.24.2"; sha256="02idsylmrpm2g20vbg81i12r6snp95lg0wbljcvrri91p09xb8xy"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; }; - Chicago = derive2 { name="Chicago"; version="1.0.4"; sha256="10dx3ka4habmgw1ykybpb3f93qn4xghy2mivmym904i8fgli28ys"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.26.0"; sha256="08zpng276f2dq56sgmzrjpf76plh9778f11liw01yx0c16ysxvj5"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; }; - ClassifyR = derive2 { name="ClassifyR"; version="1.6.2"; sha256="1vz569b6prmndq4vw7g6xprx39ckprhi8bk0hn7gj62hv4drcalv"; depends=[Biobase BiocParallel locfit ROCR]; }; - Clomial = derive2 { name="Clomial"; version="1.8.0"; sha256="1vzzb1lxmzwihihi4241xhj3l0szllzvq70da6nsir4sqikfljdm"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.20.0"; sha256="19fizpvnpzqcjlkyalg341c3v5w9ll7a6h3g2fqnq4ffn1n61a05"; depends=[DNAcopy]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.0.3"; sha256="15pfs74k6ggp2v1ilbgzv5ab0w2rvq9f4igxzaq17krdakgq2krs"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.44.0"; sha256="1v22ld0iprp2c3hrr0vnfga2j1wvlay43p9g4mdbkiw7a6mxi21x"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="2.6.0"; sha256="0wy072pdjss5jzk5s9vm70y9xj6basqwhbiawllr716c7shcgmlb"; depends=[BH gplots RColorBrewer Rcpp]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.8.2"; sha256="19i9mnbqnfaglfljgngcqw63gg1nka4qcqrn1l6siqx15sfc77zb"; depends=[arules igraph shiny]; }; - CompGO = derive2 { name="CompGO"; version="1.8.1"; sha256="18vlkgrdsd2hq2w787zqg2b0hyqnxsjnx82nnk024fsirgrb5p6a"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.10.2"; sha256="0974qmzy93msn0xr1bz98bzmmq3pnc2y43116yv7vnaabqb2mml1"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.36.0"; sha256="1kb2h46hp20b2mij120nz8lmn8icbjm0ixchg0p4izhsj1g3l8s2"; depends=[ALL Biobase cluster]; }; - CopyNumber450k = derive2 { name="CopyNumber450k"; version="1.8.0"; sha256="0swjl0jh25ybnayx2q7kk6f01q1vjgplp5791im5r4q6djdisfay"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.4.0"; sha256="0lr9m7b5hn3a983y6614905yhs86676x53d78i2bk0ndh7p5hah9"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CorMut = derive2 { name="CorMut"; version="1.14.0"; sha256="0asakw2bqwb8qp0zcwjachyx4w7kiw8fzwwa7sllfpa57m5m1v64"; depends=[igraph seqinr]; }; - Cormotif = derive2 { name="Cormotif"; version="1.18.0"; sha256="17ldh2yfiapka2clz6j71jqla6a7avas3hnnxpi0p0598vawp6x0"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.0.2"; sha256="192i2mvzsf558lsh2zshvgrm9q0a4xbhbgjjma1403v5cyrks8j1"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam]; }; - CoverageView = derive2 { name="CoverageView"; version="1.8.0"; sha256="1z4prmf20r2y872yjlj5zza31rn5dlcn95348gib04hwwba6d5ak"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.0.2"; sha256="0y16rlk5yi2bsq28m0gw4sbr0w1rf4msyimgh28rh0imd63rmmwc"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - DAPAR = derive2 { name="DAPAR"; version="1.4.8"; sha256="0m1jbv3l3qz972q53wylrybl872ldxm1sscyw8l8p7rcznk0q5fl"; depends=[Cairo cp4p doParallel foreach ggplot2 gplots impute imputeLCMD knitr lattice limma Matrix MSnbase norm pcaMethods png preprocessCore RColorBrewer reshape2 scales tmvtnorm XLConnect]; }; - DART = derive2 { name="DART"; version="1.20.0"; sha256="17x980mix19pb72yag6v0ingq64vn6hpynfpy4vcjrlhf9874pf6"; depends=[igraph]; }; - DASiR = derive2 { name="DASiR"; version="1.11.0"; sha256="078ligzx37pa3apd5xpjbf8pq0i1q7cz709767aalbwhbw2zf6ak"; depends=[Biostrings GenomicRanges IRanges XML]; }; - DBChIP = derive2 { name="DBChIP"; version="1.16.0"; sha256="1ilq33jpynz51ipsrjdbwcbl6h6a40l7d230mfqzq922347dd9ll"; depends=[DESeq edgeR]; }; - DChIPRep = derive2 { name="DChIPRep"; version="1.2.3"; sha256="10h2nwzd9z7c0nb1pw28zivq0fjpn7slzavhcwjfbynixhq2v84i"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.0.2"; sha256="01plhsbw94pjvj9hc9css0zj7vp3xzad39sbwicx7rc0wpzk5knw"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEDS = derive2 { name="DEDS"; version="1.46.0"; sha256="1pli8wgcgcsdv2r4gw9fygiv842iyi1a2w80axla98l53wjzljyw"; depends=[]; }; - DEFormats = derive2 { name="DEFormats"; version="1.0.2"; sha256="034kbmsjgdg916cgihjmaa237dx6xn24ndz50a5fxvjmpy8y99am"; depends=[checkmate DESeq2 edgeR GenomicRanges SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.24.0"; sha256="1yarc6xr0swlc6q583kmm65vpp195v86h8gsidr9as2y6cm6ggww"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.8.2"; sha256="1763z307m4k8h66xd7fjzljxggcgnf74k0rhdn40j83mbvcs4ar4"; depends=[BiocGenerics edgeR ggplot2 plyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.26.0"; sha256="04fxbnhgg6l674vr0xav0fl7vg8isqsnksvhanssarvaa1wqlrys"; depends=[qvalue samr]; }; - DESeq = derive2 { name="DESeq"; version="1.24.0"; sha256="01v5ikwpzxlp6f9p17qrvxbigxdhr0y24b9pjkh7n6ak2faqz5k7"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.12.4"; sha256="12h77f0dpi5xaj7aqf50kkyn6lq9j7bcsly1r0ffmyfcszrp1sfx"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.18.4"; sha256="0dm9n0k26gg78v8qmnjly3mdigfjdp2lzaabyss8ilcbx81z64ic"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DFP = derive2 { name="DFP"; version="1.30.0"; sha256="0r5jjzmirnb4ngcb497yqg0fg1di1lcax2nlhbq27v1grb9001q9"; depends=[Biobase]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.4.2"; sha256="1s57yfjajjw9m5i15p3wywfc1dins22fwd18bly7a14yxb6qdyrk"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="1.8.6"; sha256="0y1ysmavim5jc0mr1higk5sz9cg8bydav7zj2vn0p6da45ijjzqd"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi plyr S4Vectors]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.8.0"; sha256="1hjw3d3pwdg10bwkxwjcrcjxrcanyk13zbrhb50p0zhys5gksp78"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.2.2"; sha256="12qw1f3h4sb89fv5i9wr65hb86x84a6j5f3khwv8r9w0y6cp9llq"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.46.0"; sha256="0vwv2mndfjpcjp4sybg75abc7xnx8zyw8zjk717k6xh8c33ymcip"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.0.2"; sha256="10x1331rmvdywsfd9agzir4lalv97bzwsa4vwifw7gizdbb3a5b8"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOQTL = derive2 { name="DOQTL"; version="1.8.0"; sha256="0vlvvwhqg8vw45p6kp3p3nazvy9hkpr8wz8sxrvkdy6pyj4nwws1"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; - DOSE = derive2 { name="DOSE"; version="2.10.7"; sha256="1i3pfkvx7z1n6wzb4rnmdrnsjisfl0lnh29wl1k8kj1pgj1qbjy5"; depends=[AnnotationDbi DO_db ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.0.2"; sha256="0gkv3xvsklnhsyiwzxwqvsj3nii9rqswfbvw7nxk209zrmmqkj7l"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.12.0"; sha256="0l9sgp198pdmd36hipsk3whf29d44qqay2d1k4mchsbq0qbmwsza"; depends=[Biobase bsseq]; }; - DTA = derive2 { name="DTA"; version="2.18.0"; sha256="0y7516d5yxijnl15wmvh8n5wyp3551ph5vzdm6i0yy0riaihqki8"; depends=[LSD scatterplot3d]; }; - DeMAND = derive2 { name="DeMAND"; version="1.2.1"; sha256="1haqr8mq77jvvkrc1pfs37i89fd3zjjdi59nnl9qlll1k761qh99"; depends=[KernSmooth]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.14.0"; sha256="14bd8yd5zy4nagmcfr9r510410va9avcljaxxwjbbprp6chxm64h"; depends=[ggplot2 limSolve pcaMethods]; }; - DiffBind = derive2 { name="DiffBind"; version="2.0.9"; sha256="0sy1mb986mi1cxzy1ar5hmshzmqdw8082h725d0yiinymqbfc529"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; - DiffLogo = derive2 { name="DiffLogo"; version="1.2.1"; sha256="0dj8qkxx17sn1yh5wwcb4mmghsigicfz5kb5sldk3j988f0pnbcj"; depends=[cba]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.14.0"; sha256="14xr8g3bzhni780pafi2jm53fd124xw9rnvdanhqzwqk5l8mrqzn"; depends=[BiocGenerics IRanges S4Vectors]; }; - DriverNet = derive2 { name="DriverNet"; version="1.12.0"; sha256="1xwvryjf98hi4l5g4qwg8ilw3kw206r9ipn4dy5jv5kzgirp3p4f"; depends=[]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.12.0"; sha256="1bj86zlcp73km49zqv8ijlq9zq7bjnmf2bhcdhrcf0rixph52q62"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - DupChecker = derive2 { name="DupChecker"; version="1.10.2"; sha256="0npx294zvpypk23z0h2pmyazc7w8d5wywl6psyr2m2vhmcrax5xl"; depends=[R_utils RCurl]; }; - DynDoc = derive2 { name="DynDoc"; version="1.50.0"; sha256="0j00kjlv1h9vx5jmq7cwj2vwnif52rqcs4mb0j9dv1mndqcdf2p6"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.14.2"; sha256="1dvjnkzjfsshm15jxcmzs82jarxqx9dr8z5kafyxjklh2arivwgx"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.0.0"; sha256="11wgdgrqv83bhlngl9wqrazydsjvawnwrdb9b82h50hd5h080vvh"; depends=[edgeR gtools limma]; }; - EBSeq = derive2 { name="EBSeq"; version="1.12.0"; sha256="0yqrrabx78ml8na1ppwg6b0a47pc2c488c5pfavyi75v04k708yp"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.6.0"; sha256="001swq9m414mk6r8j5iglfbp1cw3xp165hf68jk2dy9sz0p0l25j"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.36.0"; sha256="1jvfk0f4rr8f502vhgh4fq5x7m9823xl3ncyl032rdsrwbildbxp"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.16.0"; sha256="069smdyv8bpd5v2nz2i67h6vqpfdf5r9n5s2cyk7g136a0p29zca"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.6.2"; sha256="05infzrah41xh3mzbckh2g9hywbn3xqwx3jjzvyxs3q5z209av91"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EDDA = derive2 { name="EDDA"; version="1.10.0"; sha256="10rlahznhva9b6f4isb604a7di753md6l260z987291vp70m0pyf"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; - EGAD = derive2 { name="EGAD"; version="1.0.4"; sha256="0ysn42wpji4nphdwdy2j25v137rlxpyvg2wqifqm0vh09m7mgwr5"; depends=[arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.0.3"; sha256="1f7fsh3kzhq3l55lczxmv724hwy6pq4gb1rnhc4pkqandl7vvsig"; depends=[AnnotationDbi Biobase edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils hwriter limma org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview safe stringi topGO]; }; - ELBOW = derive2 { name="ELBOW"; version="1.8.0"; sha256="0133j9zdmpy22l4672dhz8y1i2hi8a1izxakrvd0ldbmg502jscw"; depends=[]; }; - ELMER = derive2 { name="ELMER"; version="1.4.2"; sha256="0nbbh2rwynr28y2rmsd0nmpc5b22x5bbvhgrh447w9znl05smqx6"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; }; - EMDomics = derive2 { name="EMDomics"; version="2.2.2"; sha256="0qdachnnhvwyh9v3s9isd6yyksxi8gs56nf29v5rfw7429v2wgmf"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENCODExplorer = derive2 { name="ENCODExplorer"; version="1.4.3"; sha256="0khc5qfwjl2adqgayjz5yhg0g3jw0blkqxqih9jxkccrw83b28b6"; depends=[jsonlite RCurl RSQLite]; }; - ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.20.0"; sha256="012f7scrmnxqjg52gjhswrrxbvagsdxmiwbxs4n6358yf214wr2h"; depends=[rJava XML]; }; - ENmix = derive2 { name="ENmix"; version="1.8.0"; sha256="01r332wngrvzg5daspaf6dqkwanyc40mv2k6qc8iz2wvh3vdpg4q"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; }; - EWCE = derive2 { name="EWCE"; version="1.0.2"; sha256="1qcqadqfjmhr96mnd86wx9x5ncc6pm593kcqx8wnlgkkdzr6flq5"; depends=[biomaRt ggplot2 reshape2]; }; - EasyqpcR = derive2 { name="EasyqpcR"; version="1.14.0"; sha256="1vnh0g87x52qlrqk1nwfcaa4r7nb7mr6xdzrxqsivrx13k5d070q"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.0.2"; sha256="183zn477pjrj71d5b3dnkf4mgvjb8razply0lrpq8ickvqn3z3s6"; depends=[]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.2.2"; sha256="1fky5gb6ix2y0xfn8whwsrw793msmcrf5bjlpzk1vmvyyc5pvc9a"; depends=[ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.2.3"; sha256="0l1zxb5425li1jzhqd0x1dwwhl92g2d5j5jrms2bpl70klyy2af1"; depends=[AnnotationDbi Biobase biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.14.0"; sha256="0krk4dgnla63dmn5r3qy5nmq0rkmff26qdhw7rilmh3yb95ri7lx"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.0.3"; sha256="1yvvqhd2d7lz8fwfrag68xn7sndhag89dnj37w5zwg0hfippyas9"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - ExpressionView = derive2 { name="ExpressionView"; version="1.24.0"; sha256="1sirhz91xfcbsya2s9y565hffrsjbyd4bippn92x5c8y4qhyw11z"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; - FEM = derive2 { name="FEM"; version="2.8.0"; sha256="1jgy0k5a7h46vda32a2m077w4z1gif3vvxxch7qp7hx982y4xyjy"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; - FGNet = derive2 { name="FGNet"; version="3.6.2"; sha256="1b4v0hx1xrzi7zyah8wb983akr9jl3f4xqr9b5yy8cv72bqvch0x"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.6.2"; sha256="1j4gsmzzkbz0mifqqrfgaxxrvprc1rp62dhv897wx0yhn893fynv"; depends=[abind EBImage]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.8.0"; sha256="02y0jx0lqsikh947cs6byjahbi6yxplwv6gqfrdv2imd47g38309"; depends=[fda MASS]; }; - FamAgg = derive2 { name="FamAgg"; version="1.0.2"; sha256="17v6jy03f3x6a09f5fdqkw0gd4h5ipl1bcsqzq39vvkmrvdr6q09"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.2.2"; sha256="18wz62sr4nf3df165bik57khz7wq5xab6s6b100ml7crn912a7li"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; - FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.4.0"; sha256="1rixa090sdbv8crfccygaq3lhx5171fqaf7vn8dsbawfqczzmyam"; depends=[jsonlite RCurl XML]; }; - FlowSOM = derive2 { name="FlowSOM"; version="1.4.0"; sha256="05rsy2hdjv4fr9bv1b8phzdj0xw4ilgk8m3dgqlnlm6m8sylhnk2"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; - FourCSeq = derive2 { name="FourCSeq"; version="1.6.2"; sha256="13c23ndssfhzcqv8wl37zmswajyk4x08aj0v562j0zcqnqcrscg1"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; - FunciSNP = derive2 { name="FunciSNP"; version="1.14.0"; sha256="197v7kf6xl3b4jkyjpzgy1z49dh4dbrf8nsfa9mlzi114l5kbyy8"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - GENE_E = derive2 { name="GENE.E"; version="1.12.2"; sha256="0ri377knly3cwlif64c68rsk8f1fjdfx1abq55j3lr30pxyphc97"; depends=[RCurl rhdf5]; }; - GENESIS = derive2 { name="GENESIS"; version="2.2.7"; sha256="1dllw2kjrnmp61xakxavwbrgr1rfrad7hs2msbc8k6axw4n90hl4"; depends=[Biobase gdsfmt graph GWASTools SeqArray SeqVarTools]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.32.2"; sha256="1pr2zl4814b5zpzn0msyy2hwf39kv03ci3fi5113xlpbiy1rj9ch"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.38.4"; sha256="1ckgxd7h8009h0bnmvggpd6yppp461zw2bcqkda5hiwys8mfb78x"; depends=[Biobase httr RCurl XML]; }; - GEOsearch = derive2 { name="GEOsearch"; version="1.2.2"; sha256="0fdkf590kvjscvvjg2lfkz7bw7jg2vpay1z99l9yrnpgaqv146vl"; depends=[org_Hs_eg_db org_Mm_eg_db]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.24.0"; sha256="0fvdps5ly55j442lisg6hj96wn6821427xc1bdfyc7ri1ds4fxgy"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.16.0"; sha256="1qrs0apb27isv8aabv64ym1rr4zvv201v43zhmgdjdlbmwcfyjky"; depends=[car]; }; - GGBase = derive2 { name="GGBase"; version="3.34.0"; sha256="1nbqpfdpi3bh26wqmvrrfk8khpy6sgsrvkj7b193ycbdnsjv2iqk"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; - GGtools = derive2 { name="GGtools"; version="5.8.0"; sha256="1zrl22p5cfhw6w0034176js8y0rzmdhdias1acin7dwbw588rp5l"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; - GLAD = derive2 { name="GLAD"; version="2.36.0"; sha256="09wpmh5mahvg16hfl8h5rqvrxpc81df4k7z5wv93s0p41kx6kil7"; depends=[]; }; - GMRP = derive2 { name="GMRP"; version="1.0.0"; sha256="15rh0sy29v91c0s91vjfmci64ar6x58lfm3ixgwm6z7lf0xhbrl3"; depends=[diagram GenomicRanges plotrix]; }; - GOFunction = derive2 { name="GOFunction"; version="1.20.0"; sha256="06y42nydbc19z5kzp80iy3b3xhq0wmk2mfsp9chxvgrc54a21ynj"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; - GOSemSim = derive2 { name="GOSemSim"; version="1.30.3"; sha256="15g7r0cccfphm32pw9bmk28k54vl21b0jczx8nr1z2q5kgg04ca8"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.10.0"; sha256="03s79r03f2nv6blf3qrvfazx89jiyyn9bm41b53rig1lpadp2fzh"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.8.1"; sha256="0s4jsk4j2yxh5mqvvni5c606hyfqjgh9p7g4rssh9gq9saglpgni"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.6.1"; sha256="09m0g03f0s9fnp1c1h1d1mv0dw73msbifpdf8ldyqcx75c3xdx6k"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; }; - GOstats = derive2 { name="GOstats"; version="2.38.1"; sha256="1hhw6vqr8f3g4jzq0v8f2za0r1h117j5s6av87zxs41cv7dq1wb3"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.6.0"; sha256="0skhvpr80jgxfzk1c7jf2206jnxs44v6r2j39l4xj4llcfjf46b1"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GRENITS = derive2 { name="GRENITS"; version="1.24.0"; sha256="1qhjqpjdasql1i8njnq431qp8zqklb1xh170lqlwjcfhhmnprzai"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GSALightning = derive2 { name="GSALightning"; version="1.0.2"; sha256="1ahcm9iikql1d73ng7irs37rwp99q1jp5g2nbxdk7436f7hglcgv"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.6.0"; sha256="1q3pjwf66mi3kws88whw72xfh5xskvw55g7wiq3dp0kr0r45d5am"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.2.0"; sha256="0vq94s36yq591lgva3v1317kh6dpq3wvy38ayxab0zmxzqhnighb"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.34.1"; sha256="1mvgja8malrnbzfakzjl5mmi7g080kj8zgxwc5964hcmn33i937j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.32.0"; sha256="0axqalz4ixjsv91ga3sc9f9f5ncm8lr5fk6v40ng58nzb6xsk0sc"; depends=[Biobase]; }; - GSRI = derive2 { name="GSRI"; version="2.20.0"; sha256="0mwv7riwgg0jc06skna8cph7q7ry1a9k7alrhxxgysd9458m8v9l"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.6.0"; sha256="1wibhyqi2kfbi5fqmx867lxb4dw8ymfk6xkg0vjws5d2a5r5yf1d"; depends=[]; }; - GSVA = derive2 { name="GSVA"; version="1.20.0"; sha256="1n3hi48p7p5alzlw4rlxk7mp5bp3ybkf76a8b2swa7ifq52jiin2"; depends=[Biobase BiocGenerics GSEABase]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.2.1"; sha256="07ihkg1am7mfwc6f51zwpmm41sh1a3fsdkbdwk0p396f3069lva7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; - GWASTools = derive2 { name="GWASTools"; version="1.18.0"; sha256="07rxyl5b32ydnywx6z9ic156s1q6nn8wqx096pknyawi7wi9k3ad"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf4 quantsmooth RSQLite sandwich survival]; }; - GenRank = derive2 { name="GenRank"; version="1.0.2"; sha256="0dipv90wskcymvkmdw0313w5asz6wcnpx4nph3ab7kidgii6d8gp"; depends=[matrixStats reshape2 survcomp]; }; - GenVisR = derive2 { name="GenVisR"; version="1.0.4"; sha256="1593xfyk9pz92ndxgjr0ma4b1q7kjkx03a9kln4y16y2rxvfm4zh"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI FField GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales viridis]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.14.0"; sha256="17zfm2zm52m6x4kc07d9n06xyfw4ym7rk6d8z4mgxrmns7v83dkw"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.2.0"; sha256="1k9f4vdg09h2bxs5gn7fjc6vm9zdq3afdcjl0bv33m6703k50k6i"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.18.0"; sha256="055n0m0nwblasr6rwd28zpq6iranyymm403dd5bqi4kq6zg6ld4a"; depends=[Biobase PGSEA]; }; - GeneGA = derive2 { name="GeneGA"; version="1.22.0"; sha256="1p77yncy6frzqyc22yhaqx63j8xkv4idfqysald7bc8n8cvk7x03"; depends=[hash seqinr]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.44.0"; sha256="1l1ldj01a7p0ygb055kfbl2j2cj0y9xgalbq9fdn07j21jxf6wxl"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.14.4"; sha256="0560351z8f7rv7jn1ff88y1z9lyn7hd53zghfkhy2mbkjwvbn3lw"; depends=[graph plyr Rcpp]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.8.0"; sha256="0dnp91knca25l5q62ga36p04kwb7a1drmzjcbyvhkxxfd6d7h6jh"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.28.0"; sha256="0z2m96i7rv9vffw5h70lgkq9b6wj8m0p8n6nl184rkpq1d14fhk3"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.16.0"; sha256="1kj1xdscqhi84x89ygw9sc8yr991y19bc932ynhblhjrxs1fxrjb"; depends=[Biobase limma MASS survival]; }; - GeneSelector = derive2 { name="GeneSelector"; version="2.22.0"; sha256="1ykmmzr2cal43n72547ywl5w871pfxilhxnqdl2ki0dxss9l8cap"; depends=[Biobase limma multtest samr siggenes]; }; - GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.40.0"; sha256="17r1bqa0ay6d5dyihgxwv4i1mc12980dkc5j995c5qkpcg0f3zv2"; depends=[gmodels gtools mvtnorm]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.34.0"; sha256="04lgnrpx8zd1rz7zdsyvjbvnlg6l4r4rbf82xdr5bhrn9805hw7c"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="1.0.3"; sha256="0ag9v97hdk7vi0052ksapvsgh61w6i5g4fp9lygyfvb5kbzh6k5n"; depends=[BiocParallel data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; - GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.32.0"; sha256="17w40q7ykmc01xgr72z2j5yk3gyvf5y62s17n0yk4vlary01g9iv"; depends=[biomaRt]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.8.7"; sha256="1x96468bbjx7z3ikp1dgr2krnz9pwx86vmssfbfrsikaxfs4q829"; depends=[BiocGenerics IRanges S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.8.4"; sha256="1cccvalmm83ilk1kpq31ll8kdy9xclsr4pm4mlcc7bmp0rwkd2p2"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.24.5"; sha256="17qpisdgqyjz2mnaiwc4dx7dg11pwq3mkvmkah9zn07g9rhh8f7p"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.8.0"; sha256="1blvi0817c2926msjiggmrizchqzmsa2ksvfl8yg13a45s52rkil"; depends=[Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.6.2"; sha256="1cm2zp9l9jdb6bgpq1sx799j24gs077ysvg02yn4qvag0p0xf1h5"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.24.3"; sha256="098a34hfgb5z120v6wpl5nv8v61nm65yg6xq0j7i9bigvxr7apg2"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.6.2"; sha256="04pq3f474lbhdni2hx942qs1wbsbq4454pgnr75bfj7q94rbx0fr"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - Genominator = derive2 { name="Genominator"; version="1.26.0"; sha256="1d4j1k2m19w7bh41xjpl898yxhd05b2ja2ysrrpnincigdzsrczk"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; - Glimma = derive2 { name="Glimma"; version="1.0.0"; sha256="147bjpll9rjz77wdhmn75pjxv8znihix5f5sm539m897inviabcm"; depends=[DESeq2 edgeR]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="3.40.0"; sha256="0ir53i68zvb9vjvsiwqhqgppkk6r6jm6ydjcff6264mhp5pbmjsf"; depends=[annotate AnnotationDbi corpcor globaltest]; }; - GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.4.2"; sha256="03y56akzkz7dy6868kcy03gqsnsjl7si5cfsx972m8wrhx5wa466"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; - GraphAT = derive2 { name="GraphAT"; version="1.44.0"; sha256="1rb4zvlbljpvb0091j0phv6fdcpvk3f9b77dg3x2jcj321kbcgd2"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.36.0"; sha256="1nayinwnpqsn66idxyliwi6md7c7w3j9bdn4b049sqk45yq25v05"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.14.0"; sha256="14ia19g7k05r7hljybl8ipqh6bk2yc04l7vq3j30fxq9ahjx0l5h"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.4.1"; sha256="18fxm3mns373ljdsc6aqm9k3m6088fhg095bg6gamyd99dyf7y9p"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="1.10.0"; sha256="1mgswk1gr2y5ilj8v07rincibg941i4rbmk8nd73xvw2pg83gvx8"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.16.5"; sha256="0r83ml7jfpdn2286wh1614arla3ih5nqvjjnsb3n9883j2prakr4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HCsnip = derive2 { name="HCsnip"; version="1.12.0"; sha256="11sfhf931xnk6qmxmfiybfs5izgr932r3r0xxbbm96xbm6xxk7n5"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.0.2"; sha256="0df0xyn8f58vycyakx1xsv0jz43mkhbr3d9bb2cc0p5082hwk65a"; depends=[BiocGenerics IRanges rhdf5 S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.6.0"; sha256="0838l4fnfany068fz20vrcr4m4yb6di88i0whn8hyfjm8ws21461"; depends=[]; }; - HELP = derive2 { name="HELP"; version="1.30.0"; sha256="0aql69piqrfgav9fh3ff1byamd3c9k8nil3a09k4affdxl3nhqah"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.44.0"; sha256="1fj92nzkng5cgy2wkifjmcpn2lfqw3ginyxzs36pxryz12v8yg2f"; depends=[Biobase]; }; - HIBAG = derive2 { name="HIBAG"; version="1.8.3"; sha256="0s6vcx03kzxyqddzr7h3qhf6m9ax7l9n9jx9amk2f046wfhy4z7d"; depends=[]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.14.0"; sha256="0ac2d8byinx6li1r622k960lpyihgf5xp0jdifvl5dmn1va0gmdl"; depends=[geneplotter IRanges]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.12.0"; sha256="03bd29q6irgq6nqfp1grq3dzv1x1pz5bl2sx1z4714i75i8wildw"; depends=[Biobase DESeq DESeq2 edgeR]; }; - HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.24.0"; sha256="0cmcihsqxacvxf4nan48i1f22bzz4g0j2vcn0vc3r4jirznxcjs6"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.2.0"; sha256="0v5m8ix7j6db2fa461w4c50rn7xp415gaa3dl78hwbhns30f0il0"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.26.0"; sha256="0lk6qrq6in9y8xg1656m1j9mrwfajbadhr2ry7lyp8wx5acai7nz"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.0.2"; sha256="0v7szj4xh8xr4zg3p0x1gf7b278a6y8blz962ygj77pnccmqikf6"; depends=[Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.44.0"; sha256="10dq78la4kby2zay69l3s9plrd271w5f8kmkmwxmscfqbv0zhi59"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="2.18.0"; sha256="13rzsahx3a4w2s1v99kz4lg6sgll2md9ibf2jz7dkk8gafbn1yri"; depends=[RColorBrewer]; }; - HiTC = derive2 { name="HiTC"; version="1.16.0"; sha256="1rk3q4s4kpcbkm23ccw61p1isvrim3y3dhvi1kcs6yqbb3lg1nvl"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.2.2"; sha256="0gjv39l5sxsllc3c620ndnarvl4x2fd3i86pwy4wqy5riq5xxaph"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.30.0"; sha256="0przsvy6zqs4chwn0m625h421zi7dpapma7wib6v8i5lf85d4d2a"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.30.0"; sha256="0w2n511dkazajbm80kq9paypwphryf61x2rpfprc5va5wxhs36x8"; depends=[HilbertVis]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.16.0"; sha256="0g2cknzbj043m8gm8qps0mdnamcqg08pd40hm7fmz70piw7sjw3f"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.0.2"; sha256="1drhgvgl6gfzi0ii5dw86mw8bm6f008v07nbzn3865vq4l99kmm1"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.6.0"; sha256="155633pgv06qqch0x8isczm7i5w4azg99vfzbbx31xh7y0dawb8y"; depends=[rjson]; }; - INPower = derive2 { name="INPower"; version="1.8.0"; sha256="12xixf4wzsa5fbcp7prbj7lg0aswlcqcx6f6q2y6x34g7jyh047n"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.2.2"; sha256="1bmd1f662nf6s2aw2lg7pfq2d5rqbmpj7zp7wp6abc94gm8vsxzx"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; - IONiseR = derive2 { name="IONiseR"; version="1.2.3"; sha256="1dwdkqf493c19p5b3phbj4g364h0aj32szjq3n3h3rn8aw0cjs87"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; }; - IPPD = derive2 { name="IPPD"; version="1.20.0"; sha256="030pyqdmlqmriwcm3bikk0wf4qjhkrdjb306csr7327iqq4kbm0d"; depends=[bitops digest MASS Matrix XML]; }; - IRanges = derive2 { name="IRanges"; version="2.6.1"; sha256="06pyam3bjjfw2m3l86rda503lsz2jcg645lcnhvrz6qi0nv359yg"; depends=[BiocGenerics S4Vectors]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.0.2"; sha256="1nc3r8y49fgvgx0vj2m79cd5ywnm93a6vqy20cr1llg4fpnmdlb4"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.32.0"; sha256="18afl5gkrzh89wzmlpsfjzcm32yl1521dm2vrdhmy1kjjsy1g1f6"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="1.4.0"; sha256="10q5wmvwi10f81a0gss0shjv947yfghib1pk26cj04icr96v6b6f"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.44.0"; sha256="0aw92cq446dpwi6nnck72xvk67jwfr829klzbn9a6b0z53qmlb1w"; depends=[survival]; }; - IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.16.0"; sha256="1q7s0zy9bx1ypca232yqj25k8g3w33078dp5ik48j1ga71bp1xwk"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; - IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.20.0"; sha256="1z67dj5qil8l2acryqvax6v1qp0z4jnf1iiy1l87j09kyn2949p4"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.6.0"; sha256="111vqwx7cxi419jzcz3yqhzv4436flj1h839rimn5vhlk9dlq6zr"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - Imetagene = derive2 { name="Imetagene"; version="1.2.2"; sha256="1bfqjq3c62j5hirx95bi03q0mxnizgqsm6mf6snfd8b33752fy0r"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.0.2"; sha256="08nfnvchbimhdrywcf8bsghml5pwhb2ys2jyqh0nvmj9g19khhg5"; depends=[Biobase data_table ggplot2 gplots gtools pheatmap RCurl reshape2 Rlabkey scales]; }; - InPAS = derive2 { name="InPAS"; version="1.4.4"; sha256="0939f6ag20im9n8vq04k2nza1hl32mwm1xr9lyg4kpbq80gyscs4"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.0.4"; sha256="05sa7rrgw7563af9fzy8r1ndhy9f8cd2ymxc9p9fd4xmw1yk31s9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors SummarizedExperiment]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.8.0"; sha256="0sg1fqsblhxynm4yvh5jzkrjw7h7rqi3n5ck5996xd0r5zhyqd1q"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; - JunctionSeq = derive2 { name="JunctionSeq"; version="1.2.4"; sha256="1allsshg9bbl0krx9as31g41px0fvk3hn00vis3saxshq95mcn76"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix S4Vectors statmod stringr SummarizedExperiment]; }; - KCsmart = derive2 { name="KCsmart"; version="2.30.0"; sha256="0fpmjdlnvrcj6s3pnrhvb09hm1ws2nqxw7is7rdx4grq1j21ppgj"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.12.3"; sha256="14p6506ml6l1h2j3pr1hda8475sa4rvph4vc1z3h84bj0czciibz"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.30.0"; sha256="14zwnncks3ayb4dwa2i08aqf7abyxcwpd95dag6si8fwhz1di4v9"; depends=[graph XML]; }; - KEGGprofile = derive2 { name="KEGGprofile"; version="1.14.0"; sha256="04997klqr44vi87zasvr41bgjjn2gfa3abv23zqjmj4xqr5693r8"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; }; - LBE = derive2 { name="LBE"; version="1.40.0"; sha256="174bwp93lnb1lg19yd1r1piza23zm8wi2mnk3kk0r79hj9y1vx04"; depends=[]; }; - LEA = derive2 { name="LEA"; version="1.4.0"; sha256="1srrabmvb9ghvhi3vqmr348as0vjzqfmcln2lclsc6za5prqnaja"; depends=[]; }; - LMGene = derive2 { name="LMGene"; version="2.28.0"; sha256="0d0nvkcrg8hqrjlhhmcw1194w2aw363xr5dfqv9r10r618x5s5zy"; depends=[affy Biobase multtest survival]; }; - LOLA = derive2 { name="LOLA"; version="1.2.2"; sha256="0fjs5z64s6xd62161qkpb38dblsl9dycw4ij0kggrkrjsfqnnapa"; depends=[BiocGenerics data_table GenomicRanges IRanges S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.46.0"; sha256="14j8ha907nsj382hx67ci0675n15j7anxg95kz7v4lrd5w6bbb5f"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.32.0"; sha256="1lx2p99dyjg1vamglnc2j1qan52wpz2sn9lyzhq9gxh77716rxlj"; depends=[LPE]; }; - LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.22.0"; sha256="0cx9msy13cdihpdl92xz66c9hi5lblmfm113zmd6p7zzpfjzb8rg"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; - LedPred = derive2 { name="LedPred"; version="1.6.1"; sha256="1ryggr2n2rhsxcgxy3rkxhvvjxcmbj8rm274qyzi0i7na4m98jkq"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - Linnorm = derive2 { name="Linnorm"; version="1.0.6"; sha256="1s66vzwyrmxwd3y52nxikcplbl5crvcamr0cfyg5hw5hmhbx4n1g"; depends=[limma MASS Rcpp RcppArmadillo statmod]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.26.0"; sha256="04g4rh6digbdymlbbblvscsdvkq6nxnbsc7g5y2zp1afn175wg45"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LowMACA = derive2 { name="LowMACA"; version="1.4.2"; sha256="1aj59sxnbxwl5lz9nk18jb6n2da0qr3b3zz2fiw5z5bd8qd06aj1"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.0.2"; sha256="0gii3d4w8219p8lc4isbkh3y6hhz2mhgr3qb5cm7hq0v10a9w85w"; depends=[circlize data_table dplyr ggplot2 ineq LymphoSeqDB plyr RColorBrewer reshape VennDiagram]; }; - M3D = derive2 { name="M3D"; version="1.6.2"; sha256="0z20kfhx8p8l6c2lh4mhnmp8ib8jcb3ld5h2sw7n5prsd22qs1mv"; depends=[BiocGenerics BiSeq GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - MAIT = derive2 { name="MAIT"; version="1.6.0"; sha256="0qbpdilk9h6sz64p4r18iay9v8kh19y3sgik9h8mmlywfvjl2d36"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.44.0"; sha256="1h3ia41anx3bg2nzfa40vjzgrd30aayprlhj2amgiidv37xam7jd"; depends=[GLAD]; }; - MBASED = derive2 { name="MBASED"; version="1.6.0"; sha256="1a69ymyn817qn5xdm1lnc5nf1iir8sshj4awkn2vm7nc5zf0yyw6"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.6.0"; sha256="1wjd3v2kj1g7hc39rg5g8npvppyrdp99fvcqiyv7fybpp4i106ws"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.26.0"; sha256="1hv14jmmh8vzispdbww3hpbkb57naxqy7wcy5ilc1kz2sg4a6h30"; depends=[preprocessCore tcltk2]; }; - MBttest = derive2 { name="MBttest"; version="1.0.0"; sha256="1df76rma5j9nc4pzz7ql9zs08hzvsclh8crhrh3pwgidny6i485h"; depends=[gplots gtools]; }; - MCRestimate = derive2 { name="MCRestimate"; version="2.28.0"; sha256="02zlkrkzia1398wxvrqgdhika3v7nnkcy4w6bd0s1c3mzri3br4i"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; - MEAL = derive2 { name="MEAL"; version="1.2.3"; sha256="0jji6c0g6ks13g52v0xdzk97g6ifh2jkphlbwhs1qz930wmzmyk1"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi MultiDataSet permute S4Vectors SNPassoc snpStats sva vegan]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.22.0"; sha256="1c6p2jkx3p8fgxah1qs74ia4934m9cbw8gdmm9kig1sfipmw5rjs"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.32.0"; sha256="062dqr4l6fg6azalfl93zrfzj7xnx9fn0l4gbn5gmmvxz5ldqp86"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.6.0"; sha256="1bmb27ka2d4khghzp8wja5aqh82jlkqsjiqg3vc550k02g9yyf2j"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.6.0"; sha256="1ly89riycn4x92q58jhmdpqpk3y069cpipbajwla59iczjl333qj"; depends=[annotate AnnotationDbi]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.10.2"; sha256="0c82szbvk84h8p4zws8za1lk0hchf2n9p38m9dav8g8p8p2mvm37"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.52.0"; sha256="17plgfwj8n4861rpg4a5qlp951v5wsdr6p7xplb2did0hz555lw2"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rgl rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.20.0"; sha256="0s923x14xdbfqa6vnmsijfw7bifvkj4dpbvkqnnppgdm0n0y42gq"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; - MLSeq = derive2 { name="MLSeq"; version="1.12.2"; sha256="045nbqn369lisnn5b6y1lq4xhzd724dv3b58zcl3mgi3yja3rzq5"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; - MMDiff = derive2 { name="MMDiff"; version="1.12.0"; sha256="11gzg1qshfrhf7m7w60pqfndpq9xbjns1kzq83fhmg3xydw8byb5"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.0.2"; sha256="05nnk927h0bywcwkqasyhb6zq8iky18bcjhiavmjbm6rs44x8r38"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MPFE = derive2 { name="MPFE"; version="1.8.0"; sha256="0ipsvsan3z0z7ax94fg7vmmzyhzh9184nd0k1b26sr0ddqk36n8k"; depends=[]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.6.2"; sha256="1b7bv47avxhvnr0ilbsfmr2yg6q3k5m62qkmxn9fapar0c7w6my1"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.6.2"; sha256="04jqff48h48s7kwhai76y1y80hwgpw8x5svl0xzb6qvqwz12lsc9"; depends=[mzID]; }; - MSnID = derive2 { name="MSnID"; version="1.6.0"; sha256="0xgqq5gx9jgk0hflbmwsbp9l3652mm2l0jkyanxqbwn5ys6k9l2n"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; }; - MSnbase = derive2 { name="MSnbase"; version="1.20.7"; sha256="0540ha72mkd9paylq5qzpcxw63d6b4rzjplg2rdixzzdhfg5rcgc"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; }; - MSstats = derive2 { name="MSstats"; version="3.4.0"; sha256="0fkdfvd0fm5p5x5a23n2hnysawl6idwni0ib1a4ckdgx9mb183dm"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray minpack_lm MSnbase preprocessCore Rcpp reshape reshape2 survival]; }; - MVCClass = derive2 { name="MVCClass"; version="1.46.0"; sha256="1aa63zn86m9nc3pr9y4rnzh5irfmkqkxbgbx5qf87x0rxnl7b8c2"; depends=[]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.42.0"; sha256="1123cvr1psl5hvin8fw3zx3rp0317pfs7jzliyl1namkyz86nmyy"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.24.0"; sha256="1ijrsgfzfqg4knvfdd2jlhzc0d58q90phwjkfklxq416r68za7sh"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.38.0"; sha256="0xyilbr0qcli8qkj5nj3zydgpbx6xlqf9877vyyb471isd0h764p"; depends=[waveslim]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.4.0"; sha256="1f114p00splb8rkz0s4l44m16xf4i00ig6h56jvca3i9knhv9g4p"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.8.0"; sha256="1jf4jx7cybivlasmlsn369fwcjv4jyid0i5p7aj5hqs9cb48kzfz"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; - MeSHSim = derive2 { name="MeSHSim"; version="1.4.0"; sha256="1dgvpqfg41kawmdy9vag6ysm3iwkfijc48blw6rr5pbjmx75f3wg"; depends=[RCurl XML]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.44.0"; sha256="1snrpm5dx9rwb2i7g0y6q80cdjmmw5pcybifq3z1li86i5w1llic"; depends=[]; }; - MergeMaid = derive2 { name="MergeMaid"; version="2.44.0"; sha256="1dblfravkmvjcwmd9c9c5gzl68ygczsvpydcz6n2qjfnvv2qz3cq"; depends=[Biobase MASS survival]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.0.0"; sha256="01fz5ms2giwj18irr2rdm98hzg0hscai9zi3zwyqmkjwpifz845g"; depends=[]; }; - Metab = derive2 { name="Metab"; version="1.6.0"; sha256="0v6003ra26lm7gcadlc8ijn3lfiqrbc3i3bqwfmgsrd477kb3ppg"; depends=[pander svDialogs xcms]; }; - MethPed = derive2 { name="MethPed"; version="1.0.2"; sha256="0ijvk0pmjgr0x12hv12p7lbvarlaz5pg7nc2nly8hh7hmv8y807p"; depends=[Biobase randomForest]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.4.0"; sha256="19yws0346kia30p4sjmikbsvzfynl920n8ici3wpmcks2vs1a1xd"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.6.2"; sha256="1ih9s9jmixfa1h060y7sqmip1rwz32a445cfjhcff20bsjblld42"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; }; - MethylMix = derive2 { name="MethylMix"; version="1.6.0"; sha256="0waq027d51gnz6l883dph2srklzf3d1fwlan3khzcmi8yq75ciar"; depends=[doParallel foreach optimx RColorBrewer RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.12.0"; sha256="1x6kc2xl2jf8f6r2yjpybh51kk75xhmpb7m9j1zs1hzi0aqd0rz4"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.32.0"; sha256="17afgpshz7nb0kcdks19z6izb6hrmgy9rigzw3mvk488mxhczlw8"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.26.0"; sha256="0fddfvay8zjamb6gzmf6f6xvqjh163ss3wikf1a04ihj7if8x6nf"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.44.0"; sha256="0ffiyrkda0hwjg4l062kxx5rrp57q2f716gk6n3f8dicx938fc4d"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.14.0"; sha256="02x8p9l48g0b7s2pjq5j3w4dxnr6r0495di1y7sknrsbc2gdczib"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; - MineICA = derive2 { name="MineICA"; version="1.12.0"; sha256="0155kj48kxajd4sg1ajvppk1jss1wqkkyjz6xhzr3xpl9g2jnh51"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.16.0"; sha256="1yw8ym00bkvn955d8yrz068yxszy3jv7gh55z3357k9spf1r9kmi"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - Mirsynergy = derive2 { name="Mirsynergy"; version="1.8.1"; sha256="1zs09wm9n51d1bswbl6q9xmd5kb9rgbjgmqniq4nril18cqksqnp"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; - MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.22.0"; sha256="05fnam7yak4jxjwmkzmczwrfvbqw7y91layz6g7kgzz56ifqj33s"; depends=[Biobase lattice limma statmod vsn xtable]; }; - MoPS = derive2 { name="MoPS"; version="1.6.0"; sha256="19bkydam974lam2v7ljzmj6xs8hw5ggd839j5mld1in44q7p8y3h"; depends=[Biobase]; }; - MotIV = derive2 { name="MotIV"; version="1.28.0"; sha256="1yzx1m1csi9x8i0jljcqla3hgwly3yb9r710q23f5kswir3qdawn"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; - MotifDb = derive2 { name="MotifDb"; version="1.14.0"; sha256="05pbqrq547am6l74cv3pqnlw6kiasnlfx9hgicfp290ir6ws0clx"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; }; - Mulcom = derive2 { name="Mulcom"; version="1.22.0"; sha256="08h94yykypmm5zshmf0i547g6lw4bsyn5zw8swgpiv4c2p46drhd"; depends=[Biobase fields]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.0.2"; sha256="05gx3kdzrc1lyw2xx1w2vw0c562x7cj3raqi6mafs40dlxyplf0h"; depends=[Biobase BiocGenerics GenomicRanges IRanges minfi S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="1.6.0"; sha256="1shl11v2m926c2ccypj561rb17h490bndw2nflcpg19bgw43smj6"; depends=[]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.20.0"; sha256="08kjg6ynynbccdi57hns1bxnr9cjh07w71rah8zkx2irsgg22485"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; }; - NGScopy = derive2 { name="NGScopy"; version="1.6.0"; sha256="07hrqv4xdsi2w3ln4lbjgfkyqv22m9nj9zwcaxdxhy8sr3dr7zzw"; depends=[changepoint rbamtools Xmisc]; }; - NOISeq = derive2 { name="NOISeq"; version="2.16.0"; sha256="0j2698rsdbm76rcdc9b1ddhrs7ka0qwi51p8cqzcymkjks4pb4jh"; depends=[Biobase Matrix]; }; - NTW = derive2 { name="NTW"; version="1.22.0"; sha256="094lwailsdl889h880igkwmg1vkbs4k44m5l9zdncy2d4cbmz9fx"; depends=[mvtnorm]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.2.0"; sha256="00bw33qa0szb0g46ni35jaxk848pbfqcy5z7jv3sbfc3kfv2qzki"; depends=[Biobase matrixStats]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.4.0"; sha256="1y68zx0psvnyfxbslw59spdv054shrfj3m8l30f13x734ff2bcd2"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.16.0"; sha256="08x5hv0qpkg241pxzgfs5pbs5vmf7bj36hdhr1iakmqic3p88xaf"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.8.0"; sha256="1brr77b0gj4mbfcxiwk0ip11shj1829i12ivwjhls2f2iwn72s4b"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.12.0"; sha256="16hcg60fnqznjj218ms3i9yz8sw9r5fgbcbg7m6fbqdf9wvblbdn"; depends=[graph igraph seriation]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.18.0"; sha256="1h2x08ns8q4fr26mk3sqn65rqb3j6i7a0ni3fasbjsbc6yhbi2lf"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="1.22.0"; sha256="0q0qh9xwlz6flhqzvmc438h0ywj66y794mzlqyjm648qc33csd2x"; depends=[]; }; - OCplus = derive2 { name="OCplus"; version="1.46.0"; sha256="1qib8knxymmdy0a7afmjg1zvrpb4nx1mkdc53zpdicjrv1k64v6h"; depends=[akima multtest]; }; - OGSA = derive2 { name="OGSA"; version="1.2.0"; sha256="17cc03pv4lgs7306mhwd62hnkl74gvqpaw71rk8sas2iy0rd2xnf"; depends=[Biobase gplots limma]; }; - OLIN = derive2 { name="OLIN"; version="1.50.0"; sha256="0a4ahksrng4bvcslx7mw6q3gf6wlgkskqigk1axaxa6jy6jyg70c"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.46.0"; sha256="1vdkxkbwxf42fp9y24xqd598ksif4najbp77s689qr2hbi3mw0rp"; depends=[marray OLIN tkWidgets widgetTools]; }; - OSAT = derive2 { name="OSAT"; version="1.20.0"; sha256="0hccp457gqb2c1qs9jlwglvhm8dqazxgk3qj6cidh9wmdd97ppcw"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.22.0"; sha256="0i14424m00ivvssb9qax48dxk2pm68hkwykd1xqpl38p0p4d1fh5"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.10.0"; sha256="0s55hrr712z15v0svrijgr0gvn5r8c39jyff0ihl7wyddvyky982"; depends=[GenomicRanges]; }; - OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.4.2"; sha256="05vjkr2gaa1w8lnrxpmqnf1a89clwlzjq4vb9nxmjk21gp6dgqf8"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; - OncoScore = derive2 { name="OncoScore"; version="1.0.2"; sha256="1wynyfc76vz1qinfvbyzgawcwwyic1khdsmjqkr2b8mcs3sb97xs"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="2.2.2"; sha256="06i2scrv2dh5yhpaf2dnhjmmdknm0x06597baxk85k95q1m4zpg2"; depends=[data_table graph gtools igraph RColorBrewer Rcpp Rgraphviz]; }; - OperaMate = derive2 { name="OperaMate"; version="1.4.0"; sha256="0qn2r3347khd671yf200p2wfbqysi2k4wk0y52vr1kji39shjqy4"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; }; - OrderedList = derive2 { name="OrderedList"; version="1.44.0"; sha256="0z32bp9gjy0sf7qw626p2dignrcq22h6l5zwza2ap5c0hr0m7l2r"; depends=[Biobase twilight]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.14.1"; sha256="0h48qkliiyl4fk1dnk2310gy76bj7nhgnw92cxllvbcq4caakv52"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.2.0"; sha256="0p9ri0djqf87jbb6pcjz5m8l0vgjc04mspdahqaj258yg2zgkvdp"; depends=[BiocParallel cluster EBSeq testthat]; }; - OutlierD = derive2 { name="OutlierD"; version="1.36.0"; sha256="1carw9ylv7gwcawfdpx3aahbw1hnglila3miry5vhg978lk662f2"; depends=[Biobase quantreg]; }; - PAA = derive2 { name="PAA"; version="1.7.1"; sha256="1kgqb4q6jmr34w7pkgksbzbhvvlyr57xgv7k17hibggy0b1ykp1j"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.14.0"; sha256="1s1adlswz3na5k072nbsp419ix75jg4h94jgg1w54730dymphasm"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; - PANR = derive2 { name="PANR"; version="1.18.0"; sha256="1b4r8bz22rfykysbp2cfxa98gq2hsig8nx2kfizx5z7z28gnsfba"; depends=[igraph MASS pvclust RedeR]; }; - PAPi = derive2 { name="PAPi"; version="1.12.0"; sha256="1dvhghn0g7ka2qvfyj785ma6pm25p7j8j76cqwjhg9n8kja9999i"; depends=[KEGGREST svDialogs]; }; - PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.36.0"; sha256="1s2b0s5pb2yhji756y21sy22sypvp3zkmdg7jv7xnsrrnvkqjnqd"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - PCAN = derive2 { name="PCAN"; version="1.0.2"; sha256="1rkgkash3y07srq2y5r0hrhs8gzzwn739g5jhjdmky73m7xbdc3p"; depends=[BiocParallel]; }; - PCpheno = derive2 { name="PCpheno"; version="1.34.0"; sha256="0y93qv6gghr461rqbq11vl0khf25n6pvrqzszybwbrw9q6hynzhw"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; - PECA = derive2 { name="PECA"; version="1.8.0"; sha256="0qm40zwmbzj06z18k8wyqvlk6rvv70h7m8g4zrrslsjdx8anhzll"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PGA = derive2 { name="PGA"; version="1.2.2"; sha256="13a4q8dldyp2djc2f33w8kj6vpaa7xzymf3p1l47mmv6gz9n17yv"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; - PGSEA = derive2 { name="PGSEA"; version="1.46.0"; sha256="1sx7ffg0sjzs9hxh1fhp0149h6j4fhaqqrq56aanmacqpcd8lhna"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; - PICS = derive2 { name="PICS"; version="2.16.0"; sha256="0gn1dqmhii2ys95gs85sm812kgw2pnph7mv6yml0xg0929rph3pa"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - PING = derive2 { name="PING"; version="2.16.0"; sha256="13yhwmcvhcvn99x6czq09zhrqaw0p644iw3jhw2gv3r93q39blci"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.32.0"; sha256="0i114wl9w4ka7w8w1jllfcq436mgpjkxaaymbxn81kfjw3jp4pql"; depends=[Biobase LPE MASS]; }; - PREDA = derive2 { name="PREDA"; version="1.18.0"; sha256="10bnsf62vlxzymwlh683g0asmkwldgr66fwfxhdlk807lh4phi8k"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.24.0"; sha256="04wd1s0ki10scspd48h2m0y5wzxab2q6jd8farnca62sr7nzz46x"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.4.2"; sha256="1pqa3k4id6j1j8nwrp4ax3fbpxc9vhkyddy9vylg0s6l5c3jnqkh"; depends=[edgeR]; }; - PROcess = derive2 { name="PROcess"; version="1.48.0"; sha256="0dna1smq8phmm2xd4928wbr2y9a4l3yv98ss8ida1fxmbxhy3sxy"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.6.0"; sha256="07bsdx8vclk2mjpq65zqgzx8l9pb31vj00j1qi3krk2gjb64pj1j"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.10.0"; sha256="1psivm4zlg0nidg0kzy61m0my0y8pdjwprlyzcidbjqal1s8mpzc"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.8.2"; sha256="1afyrrqdxacnnx1r0pzqp1nhbjrb0wqaamycvxmap9x0nq96a6ww"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.0.3"; sha256="0n3i9385zq09jqwp81q869h5qk4xjnrnx7mlcsyng087h2sgnmvh"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.2.2"; sha256="00cbchrvqwxdv777f3rbgdqj127wi5383gk7j0amxvdx9xrkjyp1"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.12.0"; sha256="12wv9izq6hk27v2x8dv7mfvp9s51jyjydwdd2vb44a6d1pz8fn94"; depends=[]; }; - Pbase = derive2 { name="Pbase"; version="0.12.2"; sha256="1cl9j8s5hxib5wzj42rbp747ckbidni5dii6qxylp89msvp1wlia"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; - PhenStat = derive2 { name="PhenStat"; version="2.6.0"; sha256="0f69r7qg6cbpmlrbcz8ddmcfkzx5bixry0nksmkfbf6hbw08pgn1"; depends=[car logistf MASS nlme nortest]; }; - Polyfit = derive2 { name="Polyfit"; version="1.6.0"; sha256="1szx61apdn014496qzr5aqzy9nfyvnbhc7w949kxmw1vrgjkrdmc"; depends=[DESeq]; }; - Prize = derive2 { name="Prize"; version="1.2.0"; sha256="0birhqvk5myb1j41hffy71dmshc43vfx5qd9rnpwylq66dp9f9f9"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; - ProCoNA = derive2 { name="ProCoNA"; version="1.10.0"; sha256="0hh21hdhgaf63mbbfi5pnpds2bgkybnr1xrc0w2siqnyfvva1613"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; - Prostar = derive2 { name="Prostar"; version="1.4.12"; sha256="0720rlql0wq9spxrr438gsjn3xd7hci6vssdxa1mqq1p8xcv12ik"; depends=[DAPAR DAPARdata data_table DT rhandsontable shiny shinyAce shinyjs]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.4.0"; sha256="15n8ykfwh8zng8px25qybskwcr627xwap3wzz3qs8g9mgxk69avn"; depends=[]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.2.2"; sha256="1z5708sh0ar98xyrj3xpl87pn9zwj19wa2yq30kspp84kl924dz4"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PureCN = derive2 { name="PureCN"; version="1.0.4"; sha256="1nprrvr5mfccji6iw7cfwvi1d087nxa43l30lvi0fkqnaw5ba7x2"; depends=[data_table DNAcopy GenomeInfoDb GenomicRanges IRanges RColorBrewer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Pviz = derive2 { name="Pviz"; version="1.6.2"; sha256="1kqamr8ir84jy6ija3y3v99wadrfajwycwb687x9l219a0l8h5k4"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.8.1"; sha256="1r9j3324qc3r597gry39jbkvzhwgmsqkn8ss5z78k84b97n7raz9"; depends=[Biobase CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QUALIFIER = derive2 { name="QUALIFIER"; version="1.16.1"; sha256="00303dl9sypzl2zii1jyjmjvcmq4ff5qqy5i4aavzq1d82slf5g4"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; - QUBIC = derive2 { name="QUBIC"; version="1.0.3"; sha256="12qrk97m42ifqj6mk8alrhr4pxqddb2ca23raf528hxphc6z7hml"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.4.0"; sha256="1gw79h59xl45k89hj2d3l964y7w61svwlyjibz17z1r2pxc9vzj1"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.12.0"; sha256="15f9xqvhf7c57l12xapm4jfm32np0y8lgi31vp44dwz281gxh61q"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.0.2"; sha256="152iby14x0xx8h05c1c5wqk6ndv38hl3zzwj7iiw9m2apbfms9fs"; depends=[Rcpp]; }; - R3CPET = derive2 { name="R3CPET"; version="1.4.2"; sha256="1cv4dxlvxdbcynm49syajhlrk9vak54v6gmljsbry0g6hjiyfiv1"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.22.0"; sha256="11clxpbkzkvjrj6s0415285ajjziymmn5hgz61n61sjxm08al6qj"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.0.0"; sha256="0v6sl6xxnwkkkvs2j496kv9hqk7f5lbgpgk39fz2pyvxysccwi5y"; depends=[Biostrings]; }; - RBGL = derive2 { name="RBGL"; version="1.48.1"; sha256="1k82zcbyfx3p9hc8r0hwq73krbhakjan8fgbfr6w8z2crfkv3zmz"; depends=[graph]; }; - RBM = derive2 { name="RBM"; version="1.4.0"; sha256="0a17l6wmlqimb3jlh5i4qjyyhkymv4mcdhjbkis2qrf4zx6yn428"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.32.0"; sha256="0yvbvhcydsqx2c4vmdbgcsccn71yswci82xb2qcjbps4z1q31g4x"; depends=[graph]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.18.0"; sha256="15har8sa0drdjn033fia2gny1iacb5q06h2hr36k6hqr42y33p07"; depends=[]; }; - RCy3 = derive2 { name="RCy3"; version="1.2.0"; sha256="020j4ay8r4rsbwpc9bjgw96hwp4m4q4rg078grg9scqfz9jjpksw"; depends=[graph httr RCurl RJSONIO]; }; - RCyjs = derive2 { name="RCyjs"; version="1.4.0"; sha256="10d55bjav4fshn92fiif63fb17b58wsbg39fxslcyg5hl2wa8vhl"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; - RCytoscape = derive2 { name="RCytoscape"; version="1.21.1"; sha256="0jr3wlqk8aghaxdpq9a9z7gp7hmdfgmzkflv561p9g6yawv3v1q2"; depends=[BiocGenerics graph]; }; - RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.10.0"; sha256="1ly2xfmq3vwp2zxjqlmsjfy415h3zf6hhb71blf56g0naws7j5xh"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.22.0"; sha256="1p2c7l16q9lyiki1a6vq076r9crjqpr6pgjckhpcis9p9gh5gapy"; depends=[MASS rgl]; }; - REDseq = derive2 { name="REDseq"; version="1.18.0"; sha256="14f2vh1s16dmar21h673qx8ypq5rbajazvmw6iw0bvxzbk6fy7f6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - RGSEA = derive2 { name="RGSEA"; version="1.6.2"; sha256="1y5qfcspj0l1ckfqlyy0dhl3aaach2mhk8bkqyx4qr68rh496y3s"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.16.2"; sha256="03ippdid60iql6dlc5c7f2njfjfs7ssgfs8gl1p8kmrg4c4hd3p0"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.0.0"; sha256="0mhj021nczpf6ji5297zx0k7kc7503i2w5z9js5irlj5d6552700"; depends=[digest graph rjson whisker]; }; - RIPSeeker = derive2 { name="RIPSeeker"; version="1.12.0"; sha256="1dymn67l2d6165misxh4p6j8cwlydkh75j77pxx5wdnr2x2nfkcb"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - RImmPort = derive2 { name="RImmPort"; version="1.0.2"; sha256="0278fgq6b9jl5qy2nf6r1qijcrwkzyi6wpx1hq0021k3m1q2sl0b"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RLMM = derive2 { name="RLMM"; version="1.34.0"; sha256="0inyvbr5khwf24j7wdnn6x0b8zqcqf11jm5jqn6lgyxwljl5j0lq"; depends=[MASS]; }; - RMassBank = derive2 { name="RMassBank"; version="2.0.0"; sha256="0b0aghrr1s9izk7bsxj6qr2gdavxpyjk5ks7zbnqdjwc95hprndv"; depends=[Biobase digest MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.12.0"; sha256="0y5cgdcj4wn3j9pxyv0hsjpbsc7ahl2a19mj6agjf8l4hn3wg3ky"; depends=[]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.20.0"; sha256="0a33sr1iqsym990d76rhrxpmcf0g0zzg7waidc5i608496kx3012"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAither = derive2 { name="RNAither"; version="2.20.0"; sha256="0a4h1wmr158wmm477pbn2jkn5hcfj0w5dxi071shbv26b88lvfgg"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; - RNAprobR = derive2 { name="RNAprobR"; version="1.4.0"; sha256="08cp1ycx6h9h7df58v84x5l7a3b2as27hap4jd37frvhy8bwkkay"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; - ROC = derive2 { name="ROC"; version="1.48.0"; sha256="01n66xmy2wsh2m7vxvlnvh5n40cfnqngsgzywnx5ywbq3g570328"; depends=[]; }; - ROTS = derive2 { name="ROTS"; version="1.0.0"; sha256="1s48zavs9w3swn3q0hjq6rnld28hd8jsbqq1jr38dd4rmh1mxgxr"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.0.0"; sha256="0rmi1f8nr1ks5mwqmriqyh025qzs7j8a5fmfk7y3kb9wm5is7dm7"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.28.0"; sha256="08cj1li41vgxg61bgbv5gw6fnqsc1hgsm6xl3yldpy33rl3q0sg2"; depends=[affy BiocGenerics phyloseq]; }; - RRHO = derive2 { name="RRHO"; version="1.12.0"; sha256="0vv4lxavgm1jfj2lvm7j589cbnd23mp77jfwacaswgz8q3s7l936"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.12.0"; sha256="1pbsp2an6y4mgcwcsc25v6v68yn8fxpkn4anmx6rmhpdl2dvwpzc"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RTCA = derive2 { name="RTCA"; version="1.24.0"; sha256="0q7cfkhayir6a437q7glyk536jhlq61kpapsrh6kvl0m5jcknai8"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.2.5"; sha256="112xmvk4cx6y4ma9kmrl6yryadml3mwd1i2924gbj1xy3wk0p0f2"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.2.2"; sha256="0gfhvzswjdlxpy6i7bhni39a5qvqdkdqiwrm411g2mx38zicgnxm"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; }; - RTN = derive2 { name="RTN"; version="1.10.0"; sha256="14dixlh8fr7kjzf6jrgcr7qhqpdbwl5r76c78mzqig5lzba3s0gy"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; }; - RTopper = derive2 { name="RTopper"; version="1.18.0"; sha256="0bmgyn74h0i2jbqw470l3ffv6lv7iwqilgb2zx6zh1f0gsy11km9"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.6.2"; sha256="0kwgf512gld4vdmygwps0zqlas936fg05b573xvhag88rcdx8b5b"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.4.2"; sha256="0japqgx5jvava36hsc3jjx5x762ayhsklnn7m242wb77k97qwi4p"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.6.0"; sha256="0pnx0zxacwi5qbm4cy83da60r306phzc9j8sib2n166g9wpqiypw"; depends=[Biobase RUVnormalizeData]; }; - RWebServices = derive2 { name="RWebServices"; version="1.36.0"; sha256="03x97qwv3nryazz4d3g70lfs6la2v79favlgskbr3x3ajjc2n0cg"; depends=[RCurl SJava TypeInfo]; }; - RamiGO = derive2 { name="RamiGO"; version="1.18.0"; sha256="0rq2xvb4gpcj5daczrj2if7v3kzs00kkvsa7kb78v37vvhif4rh8"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; - RankProd = derive2 { name="RankProd"; version="2.44.0"; sha256="1vyghlm4a1wvq6mcw7ls0jnwf0q64730zvvycjb34x38v18wml3y"; depends=[]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="1.6.2"; sha256="1ia1gdaw8n3v091yp1hsgy6i2dcshcm179vnm3q40ip05mm9yshz"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; }; - Rariant = derive2 { name="Rariant"; version="1.8.3"; sha256="0cnqrl8n9piyzbrxpk22nqkkmrnnz7vrhpbg20i6sfyp34353gzj"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.40.0"; sha256="19cwhsshw9fgq933cgrr9j31n9nf85jjix7ykdcs43rbfryzy99s"; depends=[Biobase graph rpart]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.12.0"; sha256="1gpjc4h11g4c0v2g6fpf1kjyws93i7w1slh12gwpn4hfbha1vsp2"; depends=[]; }; - Rcade = derive2 { name="Rcade"; version="1.14.0"; sha256="0z2rd8g9dbw2q48jmw0d25qrq4x47n708kryp5r7ssb78jmvk7nc"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; }; - Rchemcpp = derive2 { name="Rchemcpp"; version="2.10.0"; sha256="1i4fm7ybclj5c87azqv2kjijq28wklrhs3vclyjfk5wapf6kfj5d"; depends=[ChemmineR Rcpp]; }; - RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.12.0"; sha256="1vkfsjl0krp69vhg5riq0bnlmij1qg8xbip5sd2m48z13qwysv6b"; depends=[flowType graph Rgraphviz sfsmisc]; }; - Rcpi = derive2 { name="Rcpi"; version="1.8.0"; sha256="0zx2x5zzx8n4ixyqk5h9sbd48nx3y68cknjpmby8j06csdzjdcc1"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rdisop = derive2 { name="Rdisop"; version="1.32.0"; sha256="1x8sdgksx4wh3kdapfmlgq312ip3a8lwi4diafgjkzjyb3rpqwgd"; depends=[Rcpp RcppClassic]; }; - ReQON = derive2 { name="ReQON"; version="1.18.0"; sha256="0kx7mz8m4siygdg1saq1xk9n4qxpz6ymsm6hf3d566sn3ldb97dr"; depends=[rJava Rsamtools seqbias]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.16.2"; sha256="1rd58nfkbjkryg5z2if9g2lck3da65bbr4pkph3wnlhxdn1i5q9l"; depends=[AnnotationDbi DOSE GOSemSim graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.18.0"; sha256="11hzn2lvgjys8jj5y6999s90jngmj8gnnq7cywql0l6dg7y4mjgq"; depends=[affy Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.20.0"; sha256="1gy2i8kkakv89d335cj0agdbdbrrcaaz5ykpgh46aphag2z2z3fw"; depends=[igraph pvclust RCurl XML]; }; - RefNet = derive2 { name="RefNet"; version="1.8.0"; sha256="0wc93cq5g9x7ah925k7jcz4cnlpccfkrzq4l3ahzxc338xyrsj5j"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; - RefPlus = derive2 { name="RefPlus"; version="1.42.0"; sha256="18pnia63wxqanc8v2ljlhvxiff0l9dshfm68rq5kwlhzmihxdz9q"; depends=[affy affyPLM Biobase preprocessCore]; }; - Repitools = derive2 { name="Repitools"; version="1.18.3"; sha256="0h1sm6jq0kn1ahkj9k8xlj9smb8j63d482wvknmx8j3xn3qmjg1r"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.12.2"; sha256="04acgb7gqf6p0dgimi5sm54kwppclamayfk8m7373bjnzd25m88w"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.16.0"; sha256="0zspfl87qz60hlnc6hcbd2sjjc9fgcq72zd75wnmf20h7ry1ngd7"; depends=[graph]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.4.3"; sha256="1wgpn9x8abjj7fc087pdavqc3fz0pl5xdh231mgjila18irwlhb3"; depends=[zlibbioc]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.2.1"; sha256="18s35h70isvy6q4psa5j04x7w0srvd3rlslzvkmb0qs2m2x786mz"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.36.0"; sha256="18rbl1mvhmh31wvlvh1mjcmy4r7688alzzg0hjswvs8dmb66pr86"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.14.0"; sha256="0lss7cx84f2sm4r6g1r3m8qpv0ml5y0mkgdbigx49676d8hir9d8"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.28.0"; sha256="19hvhrbzca631n4jz88k52zlaxj21lpcfcz6gdwqiibpa8p0hqhd"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.28.0"; sha256="10bbwcwssidad2lvk25nm9n40dgmklj7k5m7fps61ny1my4bmbhs"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; - RnBeads = derive2 { name="RnBeads"; version="1.4.0"; sha256="0jmlcjxiri356ykg6dm0cxbmh85kljq8m3cndrfqc1wdj3jg3my3"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.4.2"; sha256="1jrf22a8f5g8scpaqwyp62hlpkfa9cm9y8ifqzz6fkr319i892yy"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.6.2"; sha256="1h1g3wqrcsgmixs8bqbray6p0zknfh2gr47dxlwcmlb6gacwzkra"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - Roleswitch = derive2 { name="Roleswitch"; version="1.10.0"; sha256="1vfywgjnk0dgr47brpalcg8dwgway5lkc4b320mxrpjvkfa9nh60"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; - Rolexa = derive2 { name="Rolexa"; version="1.27.0"; sha256="002bsgk5b7zkxzf26wj53k5qjfjqn55fy3qfaql6xa78yb8kzfad"; depends=[Biostrings IRanges mclust ShortRead]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.14.0"; sha256="018l540g50nsnqwazpkla2sqf2zvsnlp4ps6j7rly2cl3qay2kzn"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.6.2"; sha256="0jm2ib52fjy13lh31xm8fn0z2rkx8sld7zykhjj2ci8514hqcczm"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="1.24.0"; sha256="0w0drs8cpk8nlazq64ag7nm1w5jd1m8riialivm01hz5zcra7scb"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="1.22.3"; sha256="0p7d542gbk5d9pqlyhvqmapfqbay2cgdrs83dvyq0fbg98nzf32l"; depends=[]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.34.0"; sha256="0xxkii2fmkphxj478ykdym1z09asz28cyzg8r7h6f4adns2rby7h"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.10.3"; sha256="09lrvy3d5q58hsgw9as4hyyx07k1vyy2zjn3xsvhyfd97yk6w6lv"; depends=[BiocGenerics]; }; - SAGx = derive2 { name="SAGx"; version="1.46.0"; sha256="1rp190n21p5cav07rkm400al354b4wwqicz3nk095jdrjw6d5pcx"; depends=[Biobase multtest]; }; - SANTA = derive2 { name="SANTA"; version="2.10.2"; sha256="19v4kvfsj6zqv18q1hhl1r0ngkxd3b18h19mbpd4p0chzrfzj36d"; depends=[igraph Matrix snow]; }; - SBMLR = derive2 { name="SBMLR"; version="1.68.0"; sha256="0xamsiq5dqmb2l52ckzbra5q072s5y1xbg6983fp9626mns350ry"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.1.4"; sha256="1laxigz5141s877f22dkw4r0icq282s2s4wxlaapdnyg062m2qic"; depends=[cluster colorspace doParallel doRNG e1071 foreach ggplot2 pheatmap RColorBrewer robustbase ROCR rrcov RSelenium Rtsne shiny WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.14.0"; sha256="038d5rd649xyfl66h0gmfgp9ldmikl39qivmz0knl4g20b8p5ma0"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SELEX = derive2 { name="SELEX"; version="1.4.0"; sha256="1gxdcql81l8anjdrpi4mc8aw36srry076yhi7vwlia3s9rg3371i"; depends=[Biostrings rJava]; }; - SEPA = derive2 { name="SEPA"; version="1.2.2"; sha256="0nmi87s9288p5mrqajpkqq80y17lh71dhr996snp9przq00g2ga4"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; - SGSeq = derive2 { name="SGSeq"; version="1.6.12"; sha256="1swb3yac81s97m2bp15j02x0s364rf1szbhfmfpnmxmqmm9jdpsb"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SICtools = derive2 { name="SICtools"; version="1.2.2"; sha256="12jpr2w61pyx61rliz0snsa1ynyxl0kszvjqvk12rkihwgfrmld9"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.42.0"; sha256="0sqm6rgfillq0fbiisy0g3cy0xyaaa7l93vw0gcjcyysyy0gls7c"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.4.0"; sha256="1z53q0f862irgdplszcpljkf27lsgw20055w0g80knygf6kkzyvq"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SISPA = derive2 { name="SISPA"; version="1.2.1"; sha256="17qvzlmbb4mpijfglfgnmk6xvirdc3xfi2fc8wwgcv4f3vw2sqmw"; depends=[changepoint data_table ggplot2 GSVA plyr]; }; - SJava = derive2 { name="SJava"; version="0.98.0"; sha256="05y04474frdm78lpwvbqsqbg9d1nw746j0ndllh2489p6qk0w2ky"; depends=[]; }; - SLGI = derive2 { name="SLGI"; version="1.32.0"; sha256="1ki1vyaabzlcjkmmdf1rj73wadnahdgvnyz5zkasfszxfifxa5x5"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.38.0"; sha256="0jzfcbhm45sgppxm21y969l2wwvvi3i0k73pgi91djxww9iax302"; depends=[]; }; - SMAP = derive2 { name="SMAP"; version="1.36.0"; sha256="0w43xrmcy6rk0rfrd5jx3s646bk2nwjcignd8gh4wg9x2wp03f9n"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.0.2"; sha256="1y6i5bifxfabhpp60np60rxqj5flxwrc3dxz5nclgm4c3kr95gk1"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.12.0"; sha256="00vxji06x84fh3sfgpdfk67ll1mxvbh58p16dyhd5xjw2rb37s6q"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.6.6"; sha256="0cjgzww9pj4ivg8rdiaz1v1kv83ghsypjm57pqbx093b1xdjgkq8"; depends=[gdsfmt]; }; - SNPchip = derive2 { name="SNPchip"; version="2.18.0"; sha256="0ajzpwspbw9jn6lpf5z0rgg1gxfr8d4qw8pwxd64784lwfcvn063"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; - SNPhood = derive2 { name="SNPhood"; version="1.2.3"; sha256="00kr6ri7vv7m0qz5wzx7bd6hj92mp2pbprbyc79ggan5dzpfaxsc"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SPEM = derive2 { name="SPEM"; version="1.12.0"; sha256="0m3cd58nm3jmdzsph3yq8ndp8civmckhf553yl1q8y4v99y9dpa4"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.24.0"; sha256="1mp626ygyyyi2faad0qg5bi86rg21sq2bs0jxs95fwcwyziwj8np"; depends=[KEGGgraph]; }; - SQUADD = derive2 { name="SQUADD"; version="1.22.0"; sha256="098621vqfykkry6hf06yg4fg4ickrcb8wscv89s763kjc1nlkly8"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.30.0"; sha256="0adrrs5bcpxqsji41wah2pww591wv8g1abrkim08cry5wpprznj9"; depends=[GEOquery graph RCurl RSQLite]; }; - SSPA = derive2 { name="SSPA"; version="2.12.0"; sha256="0v9xi3s7ayab6qcark77kblnyzh2jp0vschh4ylpfgjqljy0cing"; depends=[lattice limma qvalue]; }; - STAN = derive2 { name="STAN"; version="2.0.3"; sha256="0fkiskqylpdwgwr9nanf4xajdq9v09f6dqja69d4rw2bksb1xxqs"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.6.2"; sha256="1np76zcxqh3yqjbxqvlzfasf95bjp3sa5f7nwyzz3xffykb4fzbp"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="1.12.0"; sha256="0vww6nqv00n1230xqf48j99252dmpwa9sd9pgsjlvcgzbwgnccnk"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - SVM2CRM = derive2 { name="SVM2CRM"; version="1.4.0"; sha256="10418yvdyw9n74qjhlm9zcdnw2qpyxc75j5i3ayqdnym2xq5qfvm"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.2.3"; sha256="06pajvvis9wi9pn9rfgsdwhpvdyp6zf2iv0kd3rjkvr9ypl9m0z4"; depends=[data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.26.0"; sha256="1m47ysqnihm0kggqwzczvl8c2njcv7whbl1pz7q75bn02wn2nx09"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.44.0"; sha256="0yqq5jnyksnlwpxq9n5ajg7h0fzvm4pphsc6xks0fx7zkb7j65b2"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; - SemDist = derive2 { name="SemDist"; version="1.6.0"; sha256="1na6imf2n5q3sjfrjnhyf8jwygn4h5mafsnmlqpjjsamn7jnnp2d"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.12.9"; sha256="083wkjbmph9lw9psfb8gvmkpwwgrs6p8l6wldcffq1bp46kzmlpk"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.12.0"; sha256="06srbq183hdgvjg7dlx9iycb557j9pv9ip9ffm66kigwyyyg7ys0"; depends=[Biobase biomaRt DESeq doParallel]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.10.1"; sha256="1jali8s39gc9v9r69gknwsgkjxjp4sqyv45gkri289qx1cv4ck69"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges logistf S4Vectors SeqArray stringr VariantAnnotation]; }; - ShortRead = derive2 { name="ShortRead"; version="1.30.0"; sha256="0qlxns4bhwfpafx3km2lnivgl2qyp7n4g1ardm6vrinpq8paxbjg"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.4.0"; sha256="0c2wlp96dvwjxaa533lf0dqn42nbiilca0klzw8ca0b8qq81506c"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.10.0"; sha256="142aas9vcsf9n69c22rfmz1aidr6r9bi6q2vzl5dcj9yyfgm44h7"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.10.0"; sha256="11k8vwwjiz5q586cqcc4z2yr9h6kj78n3k4kwc33cb5yxvv5yf4p"; depends=[Biobase limma mclust Ringo]; }; - SomatiCA = derive2 { name="SomatiCA"; version="2.2.1"; sha256="17kmqrqjis7zg4wn2h1jmq27q57l3p8fb8sy9x3wm5wh2kh476nn"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.8.4"; sha256="1mkwsvn5z78sba9sx0hxrfnpkqz5xjs0zhc2a93ljx1fxzsxx8kh"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.10.0"; sha256="11vn9l50ndkxb0yi4nx1g23hzmcwlgiqjrv74vyncpkc8dw6kx76"; depends=[iPAC]; }; - SpeCond = derive2 { name="SpeCond"; version="1.26.0"; sha256="0f2m2cyqnr495hlv167hpki2syn8pq3aicsnn52qycyx7ym4rywa"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.2.5"; sha256="0q3l0fw9yx47d02w4ivaafrb4rclnd85fmyf46lxhjaskmsb10gl"; depends=[AnnotationDbi ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.12.0"; sha256="1jqngzakzc28vclxd14cbgfihvh161qh665ps5zmc00sjiapfh14"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - Starr = derive2 { name="Starr"; version="1.28.0"; sha256="15h869kg4ba6qcx0gvjfp3k4dkdxxl9pbr1cpmyjha05zvbk3zss"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; - Streamer = derive2 { name="Streamer"; version="1.18.0"; sha256="03p4dpi5lfl3q4wfh2q26vmshawxzpj5linh1933724lip4bn20l"; depends=[BiocGenerics graph RBGL]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.2.3"; sha256="0c43fsrha886sd0diislnlf8r5h5x7fbhphkzcm0rw3k2jz8wlyk"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - Sushi = derive2 { name="Sushi"; version="1.10.0"; sha256="0y9gz80xf5y2pilcg7c3gffsdspgr2hr51jbk4xhazijzimwf70k"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="1.0.0"; sha256="1j0dzmx8d247s206cfzf80p6gjgh44qfccvbn0xmjrpswbwsj3sy"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SwimR = derive2 { name="SwimR"; version="1.10.0"; sha256="0prwypkjq3kry70akfah50bfh6rdhfwgcc5a7wp7vd7nz2sn78cs"; depends=[gplots heatmap_plus R2HTML signal]; }; - TCC = derive2 { name="TCC"; version="1.12.1"; sha256="1zk7njhdv50lryrdnlnvrbkzpjz4zizwzv0v7hdxg45jak1q7zvd"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.0.13"; sha256="0hs370sjkx5x8fgz902a91q1r5p9am6s0a2sscsw1x391xz659ad"; depends=[affy Biobase BiocGenerics biomaRt circlize coin ComplexHeatmap ConsensusClusterPlus data_table dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicFeatures GenomicRanges GGally ggplot2 ggrepel ggthemes gplots httr igraph IRanges jsonlite knitr limma matlab parmigene plyr R_utils RColorBrewer readr reshape2 rvest S4Vectors scales stringr SummarizedExperiment supraHex survival TxDb_Hsapiens_UCSC_hg19_knownGene XML xml2 xtable]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.22.0"; sha256="11hy6j6yv008bfkggjyb08k9dzk2xy5sdklga62v8lczpwd161wn"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="3.12.0"; sha256="0ayw4ir8rpq1lk2ml7djp8x67fhn43x852p3myjnb0d8war46whm"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.10.4"; sha256="1hgaqng02y0kgmjnxv8z93698hslr7cqbmgdf8rpaxg6zbn9cb0h"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TIN = derive2 { name="TIN"; version="1.4.1"; sha256="1mgbbk2jifb04c07bwhj9azhgsnza05qf28l2jpi9d10qnfn0nxq"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TPP = derive2 { name="TPP"; version="2.2.6"; sha256="1xzvd2pf6j7d9wwjsfvxzl4xib0h2nxkp4zzb3g60p6mfydr78gd"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr RColorBrewer RCurl reshape2 VennDiagram VGAM]; }; - TRONCO = derive2 { name="TRONCO"; version="2.4.3"; sha256="0j32db8d067nd7fiiny4whv1hm4w8fv1ivq91ri728n21f92qw52"; depends=[bnlearn cgdsr circlize doParallel foreach gRapHD gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.10.2"; sha256="15mi3qg8qrwa44h52cbrmalyi13bbllzcjc4dglpp9mnybwrs126"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; - TSSi = derive2 { name="TSSi"; version="1.18.0"; sha256="0y2grk912mv2jfadypfrxr5k2kkwl6s2dcnn7g3svj65038b92jw"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.2.0"; sha256="1a2gg203j9djf01w5xk04h79mn7wgd1yibgrvp1qaj3hvl0i0n54"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetScore = derive2 { name="TargetScore"; version="1.10.0"; sha256="1rj56jjhp4cz6jp5xrbmj9s3jszq5dmczf5szbzc34fg70y4fbqs"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.28.1"; sha256="0wl9qx6q1czz2nhzz7di928ldv2x0bwj5si6kfm9rpw9q5v6wcs2"; depends=[ncdf4]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.10.0"; sha256="085z6j0a0rk86lm8c1asks2rvl7f0w1ncvsly2p8s9jfbk8yahwc"; depends=[foreach GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - ToPASeq = derive2 { name="ToPASeq"; version="1.6.0"; sha256="1q9ys84ccv79jm475vm40ncm15dchlw8ak3xarsw9vkdrr4dv5wl"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz SummarizedExperiment TeachingDemos]; }; - TransView = derive2 { name="TransView"; version="1.16.0"; sha256="1s4i694g2qlf9hsci6flm6z7vxic0n63rc1fi4dh8ag9ds2b9wzj"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.20.0"; sha256="0rda1gw43nbs9p3axsiwr3vv2rxnpnpsip8pjk8z6jbk01hc76jx"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.38.0"; sha256="1lg9s53a1cn8zqh4jkns7x9ivp4wc1557nphv6g5m227pi008vrx"; depends=[]; }; - UNDO = derive2 { name="UNDO"; version="1.14.0"; sha256="1i9hsyrmzlnkl37wkxkxb4y26qr3ds987kb0f18c1g75pm3pg5vd"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.12.0"; sha256="09wayrpkk9mpmm8a6ckjyazlyqy9lfnz89xj665khnpblicn0f89"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="1.0.8"; sha256="04zc53lh2r4mv6sybs3rf4b7gqv66q1gic8fycyba8fhb4p49glp"; depends=[DBI R_utils RSQLite stringr WriteXLS]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.34.0"; sha256="038ziyk80ilfwyxg104sz436all2spblwfy7gk64prshzlb04hbc"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.18.7"; sha256="002kif2c66wbcng953m3g1jys7w1lgz7hh3zsk4jlnhc20jdv1vj"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.8.6"; sha256="1na1z0hk8xyvlwb43d4knnhaggbirlq1bdsb53q3s9agqkc8lki2"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.14.1"; sha256="08kasppyj8h2vrs3sk9m8f1ixk5r689j9i43j0qjdp3kl8kr8ply"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - Vega = derive2 { name="Vega"; version="1.20.0"; sha256="19pd5jgc83gwgdmi1c2n5hjark0qk20svh0w5ay49xs82f939hj2"; depends=[]; }; - VegaMC = derive2 { name="VegaMC"; version="3.10.0"; sha256="05mkdqriizqddi6p9mnb52zamvgm8w967g1jjbinakhb6fbxqv76"; depends=[Biobase biomaRt genoset]; }; - XBSeq = derive2 { name="XBSeq"; version="1.2.2"; sha256="1ilvzhl373lpxsq9ff5i1hx09s0jj3ahkhg6i4x2dnqciq2kkax4"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; }; - XDE = derive2 { name="XDE"; version="2.18.0"; sha256="032bvdc2740cni5lkvkiybmyf01y6hg8xmz216p73aj75ggbp6i1"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; - XVector = derive2 { name="XVector"; version="0.12.1"; sha256="1kydy9f5y0ihn2mbkamr1kh0g1d3g1k9d7s4i09qgw9ysr6j414v"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - a4 = derive2 { name="a4"; version="1.20.0"; sha256="0da0wivzg69f115yc77vajmzkqvb6y98lg35q2gsrb44wyhsvv2f"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.20.0"; sha256="0pjanqc2z19ya3p87sqfb6avb3xmmhmr96c2bg0psjrh986d67q9"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.20.0"; sha256="13a97mbfrzs4wfrm2qswrzw0rxiqc8405imz5lii7qygrmw3l8mr"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.20.0"; sha256="0aqrb7d54mbdpkk1q86y5ixfnp569kzrw9azl7v4fwcb9y54k344"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.20.0"; sha256="06y6v1lj3wbhvr6y6q36qvkpxbbj2wcbhzzwkh4dsfvblwr90sw6"; depends=[AnnotationDbi]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.20.0"; sha256="0rfaqy40m7mhf3zjgcmsz99sm9f4nvbk8sqxn7lswwr42656ga8g"; depends=[annaffy xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.50.0"; sha256="0g5gxc7204171lb1mf00vdi5yj4cfvvaspzd12xxp6z62ndw8ws7"; depends=[Biobase cluster multtest survival]; }; - acde = derive2 { name="acde"; version="1.2.0"; sha256="04r23mxk2srspzl2sghkjvr98apyq2kz213wmks4kpa6lpzvsipx"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.42.0"; sha256="1qrni9jsn9q1y9kskxynyi7pihzf79kbgchpfnbqr8q3xfjbfcm1"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; - affxparser = derive2 { name="affxparser"; version="1.44.0"; sha256="125ckbcc1bg041a9khiv9m3hdvzhm7mmi3hk2zp4hzza11a9mww6"; depends=[]; }; - affy = derive2 { name="affy"; version="1.50.0"; sha256="15620q8x0d42izn5hdbbmj7207id5ld1waws2d9ykplbv88ld8a5"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.30.0"; sha256="0bzifl3dvccy2x2al3p9fqwhznxp8j0hisa2sr9hs896s0frc5a6"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.24.0"; sha256="0w2x43xziy1d5nq6vmgnr753z36841y5n552h1liwbf6wzrwm4mi"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.48.0"; sha256="1g4ci0k5b8i05wpa4kyxm9f83qyb0ym4v8v5vzqq35yhsh78lhw7"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affyPara = derive2 { name="affyPara"; version="1.32.0"; sha256="183npqbc6zr8rwkfrsk78s8vha8fcmahwzn4fh39chf010kkxjvy"; depends=[affy affyio aplpack snow vsn]; }; - affyQCReport = derive2 { name="affyQCReport"; version="1.50.0"; sha256="12yk6qdwj1840kys8j8iipsbyrgqkv826arqsvvb0kk9h0bqw3b8"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; - affycomp = derive2 { name="affycomp"; version="1.48.0"; sha256="0w1095afp97c2qi2rrlp64yhxh0qrlnrgd6d3q1v608lv9nwknxs"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.44.3"; sha256="11cvxkir715kj3z9qsshss6zpxshynzw19nk9dpvvw7g76wvljfn"; depends=[affy AnnotationDbi Biobase edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.42.0"; sha256="0rx7vf9fpl4jpnvdcvwh250nnpzxarrrl87dp0pwasmghzdyl9vw"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.46.0"; sha256="1xspid2m74cyivhmhx4jlpli9pixvx0jfs5r05w4k9mj7jjxaivv"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - affypdnn = derive2 { name="affypdnn"; version="1.46.0"; sha256="1yvr21w5s7kxl8rcp052f440l2czbwchmyi3hcpiqjvxc6fjmb9q"; depends=[affy]; }; - agilp = derive2 { name="agilp"; version="3.4.0"; sha256="18gd0wj3gz0fbasrfi8jx1r6m0nl7q83p9dcp2jqbkgrqk6r3ki5"; depends=[]; }; - alsace = derive2 { name="alsace"; version="1.8.0"; sha256="054pbjii52325xf3ar1ma8afnmxzwirgygj2xl5y2ngq09lyd9m6"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.34.0"; sha256="009cqk05bld0h0p8wmz8103irs1gbgyrpsnq5nsglywk1i5hqq4a"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - ampliQueso = derive2 { name="ampliQueso"; version="1.10.0"; sha256="1kliy097yycls88cd3qxdg8vjwbb8v8iv9kp12kdq2ws5rc1gcvn"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; - annaffy = derive2 { name="annaffy"; version="1.44.0"; sha256="11dfl5mfzghyc8rc3dnclmwnn4kbrgmzizbqgj5dvy5x70s79hi8"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; - annmap = derive2 { name="annmap"; version="1.14.0"; sha256="01s00vg5p0kcpdsh4mib9xiv6y2fygqxi6n7bm6q94vrwaipjwmd"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.50.1"; sha256="0anjh1b3vckgcfdxdd7jdhzsdivjlgx381i97iz59691kmvf8pqk"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.46.0"; sha256="1ywpxlb3faikjqvaksr4xx1b48daa6yf6vmhs20llp9rrpwnl51p"; depends=[Biobase]; }; - anota = derive2 { name="anota"; version="1.20.0"; sha256="0kzf4lkgb54w8dy5xkadgnf9j4s47xnc53s3xn824k6sdg0l6grh"; depends=[multtest qvalue]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.12.0"; sha256="1y2sw41rv92wyq4dsqy45r0yqbmvp0dyh2jq8prqaniiiwhxh1b4"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.38.0"; sha256="0virfxj7x7nzs1xhh9cia3c951mlcgj918sfzy9w75p6cpciaww8"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - aroma_light = derive2 { name="aroma.light"; version="3.2.0"; sha256="0yjmmxh8gl5nr5w3913xvk9nxmxd8qidjmzkdxwf756g01a6gr4m"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.30.0"; sha256="12ws1bc7jwnys7dj43bd2iib7gdak9i3sirsnkldcyk6ndd18wi1"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.50.0"; sha256="0jv03ywh3hngykll9zbywlsdq0wl7629qlm285z3as6kjzv04dkk"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.28.2"; sha256="08jm8wxrnxik6s9lnchq5crglzxscrnh1a06nbfdaj3h9nxwcb01"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; - attract = derive2 { name="attract"; version="1.24.0"; sha256="0d7bcdmk9dgx2yqsvvmq39l63lajx4nvx4km1b3nnqiwqph3cmlr"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - bacon = derive2 { name="bacon"; version="1.0.5"; sha256="1cnjlgjivxgswfqvk9yk8b4pi89sr8mxaci486mybpbjvzrjzsc8"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.4.3"; sha256="09nd5792cfi5zbqi58a8ggl4nff6n87jyix0fwn3xgf91qzcrgmr"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bamsignals = derive2 { name="bamsignals"; version="1.4.3"; sha256="1xqiqvg52p6fcvhr4146djbz79r3j1kmh75mq7rndwglmiybpwmy"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - baySeq = derive2 { name="baySeq"; version="2.6.0"; sha256="1c2la9fw65mz4ns07h9n97di1rvzw8q8ga84x4x14y4hcm1zcr5a"; depends=[abind GenomicRanges perm]; }; - beadarray = derive2 { name="beadarray"; version="2.22.2"; sha256="03dzp6fpwwc3znf6by1c1s279ry41c8rlszclixzkmhm1q7vxf43"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.38.0"; sha256="0wy6zva0z93i4hgcms8fvsbrhk9kzrapsiha72rsirgsd94zxsrw"; depends=[Biobase quantsmooth]; }; - betr = derive2 { name="betr"; version="1.28.0"; sha256="147i92ki54l0m26i6da1mp4cx7d3g3dd3sp9dk2lz0j46wd3476n"; depends=[Biobase limma mvtnorm]; }; - bgafun = derive2 { name="bgafun"; version="1.34.0"; sha256="0z8p6zl2080kkr48q86kqh2bhs3fiq6zzzjj8vgv7mqjwgwf8w06"; depends=[ade4 made4 seqinr]; }; - bgx = derive2 { name="bgx"; version="1.38.0"; sha256="17dmjh35hr4jbxqwvw5r5w99m27ck8zyfdysd86cc679fc1d6ird"; depends=[affy Biobase gcrma]; }; - bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.18.1"; sha256="0qv3l5yvg530a3mqdgnp01z3idkxr8qlnd30qplr8wr33gxvqa9f"; depends=[bigmemory]; }; - bioDist = derive2 { name="bioDist"; version="1.44.0"; sha256="1z1pgyrz1fswvsjravamx1w756w7y1ld4v8ijbhms8n39397jzza"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.10.15"; sha256="01gr7k0irkblhivnz4vj2y6pxwkhz2ccw9y4wcw4cf6j0yp6aq9x"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.4.2"; sha256="1i5y32sb8zm23nkxx05b05wcqr1zgg2mh2rfdif3a27ax6r6vkiy"; depends=[Biobase broom dplyr tidyr]; }; - biocGraph = derive2 { name="biocGraph"; version="1.34.0"; sha256="0x1ka2b6gwzncb3s8k4dz8wnwfwiwzcmfzp0xrh94mrmwhda618p"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.40.1"; sha256="1d1g06zwx3xhc07mdhs5x31730xw08fg3x73xyfj0qdy2ykww3f9"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; }; - biomaRt = derive2 { name="biomaRt"; version="2.28.0"; sha256="1g0w6an9hkflgyhvq6pmrs92s93qarv23v636b9a4bz771wjvm5v"; depends=[AnnotationDbi RCurl XML]; }; - biomformat = derive2 { name="biomformat"; version="1.0.2"; sha256="1shbf6gscvj6n52azvx6phcql3p462bk68cr9gr44lshq3y3g49d"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.12.0"; sha256="1yr8bhqmkmvmw26fv53xkam05z17b0chwziv8b793f8zlkq34hw7"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.0.8"; sha256="16v3kvd4zgsws59cz67642dnyzk9a8fjdb5g2mssh6znk9v6ig4a"; depends=[e1071 randomForest ropls]; }; - biosvd = derive2 { name="biosvd"; version="2.8.0"; sha256="11wzvy6x5zvqxl1g3z7xbsmn94ygy7fiazaq97fg88xqcc910kmv"; depends=[Biobase BiocGenerics NMF]; }; - biovizBase = derive2 { name="biovizBase"; version="1.20.0"; sha256="1plrwh1rqm6830xzmws9fna6azyalfnvn6r55bxifnhxy2zi1dpv"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - birta = derive2 { name="birta"; version="1.16.0"; sha256="0nrvdpfjra9ndqk2v07pl8srizg5nfigk3l25d28wzz81ngvcdfq"; depends=[Biobase limma MASS]; }; - birte = derive2 { name="birte"; version="1.8.1"; sha256="1d9hvwc7fcdbk4c93qgmgcrs5fpjjl4f469z8sk60ryrc8v58i9f"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; - blima = derive2 { name="blima"; version="1.6.0"; sha256="1hirr1g1q6bn6l877m9zz9vl8vnpdv8ziacp8d2if98anh8xmp4q"; depends=[beadarray Biobase BiocGenerics]; }; - bridge = derive2 { name="bridge"; version="1.36.0"; sha256="027098brim9m6dwf5m5ksjidy4g5q4s7hq92spqvnmjpcfrc9bzx"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.8.2"; sha256="0pv4fsw0mjcyq3171d507bwv8aqwzsqdy0v2ghlkx5z94qxsk67g"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges limma locfit matrixStats permute R_utils S4Vectors scales SummarizedExperiment]; }; - bumphunter = derive2 { name="bumphunter"; version="1.12.0"; sha256="02apjhvwqizlwmcw6qzaqj9p73j5qvnnf7bxzmgqy76m0723k2qi"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.2.0"; sha256="1a90karz4m13lpsys9zlif6y95xxh4b5g8l6db2v0hfcfrz5msk5"; depends=[bc3net igraph]; }; - canceR = derive2 { name="canceR"; version="1.4.0"; sha256="1fk8mv5jx22y36m7bb8avf51dgpzyhx5j1kk1vglcyym9g4d39cw"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.16.0"; sha256="0j3apzzkh744hha3nzsg0inhgr24dp9l217vgzjyrxq2x6rq9fra"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.6.0"; sha256="071x3182mjwd56dchz6mndzc3gpibxbvh30k957qdmmfc6bpadi0"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.16.2"; sha256="0l4zaw9f3h0innxpxphv46f7blk0aa1xfy6r7rya2rqb89rnf3vk"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; }; - ccrepe = derive2 { name="ccrepe"; version="1.8.2"; sha256="0qh1a5j4i1x4w6d7nvv4fb4prhyfhb54knav3849c6flkx4px2pn"; depends=[infotheo]; }; - cellGrowth = derive2 { name="cellGrowth"; version="1.16.0"; sha256="00qijblp5ycjhl6vrvdjfzx87k95p84mxglk1gpnrsqxkvaf61dx"; depends=[lattice locfit]; }; - cellHTS = derive2 { name="cellHTS"; version="1.42.0"; sha256="0ghls72gnsgqc28km5a1i37y0hg2774b09ws20l6jfgj215lsfas"; depends=[Biobase genefilter prada RColorBrewer]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.36.0"; sha256="0f6406a1r5gqh25kq6fl9hws5bxjcmg8dz93hf24iqfkri8qzzw8"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.2.2"; sha256="0wzdbyg8yj602mndpmwaqfhyql424w0fgnphyv4v2qr52wwzpz12"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellity = derive2 { name="cellity"; version="1.0.2"; sha256="0qg1g8k6wfamsazj13nlrra3zydj5r2yn42zkzniwyrc40fvlm86"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cghMCR = derive2 { name="cghMCR"; version="1.30.0"; sha256="1g66pc61nj628dip1rysc0mdq6yjhiznv6p8nfw5lmm1kbg3jzn1"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - charm = derive2 { name="charm"; version="2.18.0"; sha256="1lram97r7bqbmi6qxwdjsi4m6vvqry84f2l2afzl1f6v7yjzs1fj"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; - chimera = derive2 { name="chimera"; version="1.14.0"; sha256="01j46sycs492j550n6z38nj23s6v0b0mrffpyc2hv95g6nf5vmx7"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - chipenrich = derive2 { name="chipenrich"; version="1.10.0"; sha256="0nx5mmdxjra1vkdssn3dwf6jafdqvjbc53vcqfva0ns4jyyzx89l"; depends=[chipenrich_data GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.22.0"; sha256="0b42aikjq4wk83v314yrq1jjmz0vszk9z00xw069h84shz4zrnng"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.36.0"; sha256="01r6w9y7gw0zja2vpr5g4mp4400njixc0mrlmy010brdfjx6zgg1"; depends=[survival]; }; - chroGPS = derive2 { name="chroGPS"; version="1.16.0"; sha256="1h0nfn74agdhwcr1w1xj0iid3y0g0mkf22b3zajxyr9yjpjws7z8"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; }; - chromDraw = derive2 { name="chromDraw"; version="2.2.0"; sha256="16p54kd35ghdx67pnlcm6v9paic0iwl5sz4343v8rhf8yf9dxyih"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.0.0"; sha256="1qwnqmihapc0xiii8ihpw9xralwaac2jn1k62rd1a83w6b3l76f7"; depends=[biomaRt GenomicRanges]; }; - cisPath = derive2 { name="cisPath"; version="1.12.0"; sha256="1a3kjahscpdpgv07d3sjag29szyjnrn2fmgv534ljasjqdk7ay5k"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.10.2"; sha256="1p2c2a7snnz25msmzxa30aijpha8mivpw6rmbqcqhv78xv5a51qq"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; - cleaver = derive2 { name="cleaver"; version="1.10.2"; sha256="08v4a6rc5yx3vqjdjdzxsxh6m4dnj52ybnchhhx0qq3y8ma4djd3"; depends=[Biostrings IRanges S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.22.0"; sha256="19in9vc3w35v1ixwc2i7n1nm8zc7i79hhig2n224zjrl15j0bd9a"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.12.0"; sha256="0f8zx4s7linhwflnz57qhgx16zkxlgd8mlsck4py5zvs9zz7ph6c"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.10.2"; sha256="1l4dmbszg4qkw4ksj1lcfrfi5j8fvk51qsc1l7bhvcvzwvbp9p6b"; depends=[]; }; - clst = derive2 { name="clst"; version="1.20.0"; sha256="04wq05qyrxbd138y7npfmnr7d8pngldcm77ksf5ckn92n6gc46nk"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.20.0"; sha256="0fz7mcf7csfmw9r18anliwkh77nv6bhkq6ah6cx1a5nvn05pq4l9"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.0.0"; sha256="0k0l8s50hnpsfsfalfcvjfg38dv9pyi12g8m17nqrrvkldld7p9y"; depends=[sm]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="3.0.5"; sha256="1sm8dcyps81phf2jz7xc27wg3i43nr32883r2pb4s7syqsl4kvn0"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim GSEABase IRanges magrittr plyr qvalue S4Vectors tidyr topGO]; }; - clusterStab = derive2 { name="clusterStab"; version="1.44.0"; sha256="039xnvsji3aqvxkj4zq02lv5nk0hkgkhhvk7x9bqhgc1jlafgbrf"; depends=[Biobase]; }; - cn_farms = derive2 { name="cn.farms"; version="1.20.0"; sha256="1f55s7x8g7jyljgcdxvcfgy65h5dm7fmgwxb1qdh557sifalvy0v"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.18.0"; sha256="08mhnn6vgbcfb1y84s2f7mk96z5fhafrb72cacfc8ija4l0a86ki"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.16.0"; sha256="1ggm0gk6vjx7161xc8pcy7d9z1z4mngxbhjmmnj9w7qd2225yblk"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.16.0"; sha256="1y5c43s6ivmin43rahvywm0jqyflw3klzj56b5f5yvbcn13m463w"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.4.4"; sha256="0cawkc12cj2039p7d416jalz0n6p311lir2f5cdly79n2phi1wyx"; depends=[biomaRt colortools corrplot GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; - coRNAi = derive2 { name="coRNAi"; version="1.22.0"; sha256="1ib66fljgiqykjs0i9yrqsa979ibz7nllh3f3gybzrs86k8i5p6h"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; - cobindR = derive2 { name="cobindR"; version="1.10.0"; sha256="16b085jxfc2ph69m8rd7523mkvribbykzv05g54jakqcgz613g6f"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; - codelink = derive2 { name="codelink"; version="1.40.2"; sha256="16a2qshsc7515a35cah6snifv30rbb3gzb034amz1g3a2h24z2bq"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.6.2"; sha256="0xy31pr6ginsxzf2lwyd9mnraw690zj37xylm7xfi1w1kchg3nfh"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.6.4"; sha256="1v22hzp89409vfdi6v56cg4galfb8yr3sqpv9igjjvbbyvyil7p2"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; - compcodeR = derive2 { name="compcodeR"; version="1.8.2"; sha256="0w39pnyygvgicdivmcb6p0691fbrmg628d54i1wan070ndxkqn2x"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.0.2"; sha256="1lwzp5l463xg2q97mhf1cz1fgqyf0gwkzipnw1ars6832vpd579s"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.0.0"; sha256="1apjm3i4vlkwfgrrby58aimixqlmc56l24dc2vff8s8b568582w6"; depends=[BH BiocParallel clue cluster colorspace diagram DNAcopy exomeCopy GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.4.2"; sha256="0hk6chlakd2alghnzsfgzw9bw2js4byqd7lsk5kz3iwb3dds8k9b"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.48.0"; sha256="1pr5nn3k8a85r1ssp6hvgayrq6hars82m9v6h5arbz93ksjj4ax3"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.40.0"; sha256="0ly8af559z74v2lkhiviamb54b7jfpmmnqp9fxvv2c2vg56nnigx"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.12.0"; sha256="1rrc8mbkh73fizp2jdqqiarxbwryf25lwcf05dwvyqbnaz8c94zl"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - cosmiq = derive2 { name="cosmiq"; version="1.6.0"; sha256="0057j6a4lsmjfvjk48x2axmg13f6qbf4pjzc2ijz98laljlakc18"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.4.0"; sha256="0hcamhbxrs5vpgw2rrm399s17ywnqqi4lx78aga2x8v9l9acga1z"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.18.0"; sha256="01rqvs400ldfcyayjbqd2jpp550v8xh4a4kvic4b82dn3cxb301y"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crlmm = derive2 { name="crlmm"; version="1.30.0"; sha256="0z8b97v04gmcv2zs7pnk3bwccx28whzgkgl4d1gah1b9rjpdifaj"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; - csaw = derive2 { name="csaw"; version="1.6.1"; sha256="18qj9axgs94vkhxwx91lmpm8rssvwiidgbijzrzabss69y1m9g8y"; depends=[AnnotationDbi BiocGenerics edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - ctc = derive2 { name="ctc"; version="1.46.0"; sha256="0568b5b2f97jdsmhf6biixpjxd1wgh2imalcr94szynpsr5j2knz"; depends=[amap]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.14.0"; sha256="1ni7ldzbj5sjk2124i7s2p840z4igcaak4kjb28yhv7c0c2nx362"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customProDB = derive2 { name="customProDB"; version="1.12.0"; sha256="1nlyb71mrr7dd73n7gq5dvxp9yisqb8skfdabpn67wvx2kl0qq68"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cycle = derive2 { name="cycle"; version="1.26.0"; sha256="0clsi3dm3dbmfd7g03gvfhc4zczfv6lfivrxgjbhs3wm79zgbl7l"; depends=[Biobase Mfuzz]; }; - cytofkit = derive2 { name="cytofkit"; version="1.4.10"; sha256="1gdbc8k0rqrk83h90rshax6bilbb8wip9xa9bf42301a87lysnk3"; depends=[Biobase destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny vegan VGAM]; }; - daMA = derive2 { name="daMA"; version="1.44.0"; sha256="1xx0ba5wjh1ma0fpshy50ajshfpv1w1zdmzrf21jdbq1zz8ciw87"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.0.3"; sha256="12bb9vp2yxayzxicnxjs0cb5bria6h9w06qcfn4yhnp4641ql914"; depends=[Biostrings data_table ggplot2 Rcpp reshape2 ShortRead]; }; - dagLogo = derive2 { name="dagLogo"; version="1.10.2"; sha256="018vdgbyfmsrxhkv9kf80yfsgdl3mqmvzfwcw5lanfyipwpl4jgm"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; - dcGSA = derive2 { name="dcGSA"; version="1.0.1"; sha256="1nnh3xa7gg1ap24wf79clkm4vrlr9jbvq5f5crl7f5mmfmxpzp43"; depends=[BiocParallel Matrix]; }; - ddCt = derive2 { name="ddCt"; version="1.28.0"; sha256="1k7r0w22as0226sq11kwfb5ihbim5i5bny2qvn7gx86fzyy0br43"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddgraph = derive2 { name="ddgraph"; version="1.16.0"; sha256="1yqkrzbkjn86mwjf5x5cq1gf8k20hnbhwppzkpspsdcyi68ldbf5"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; - debrowser = derive2 { name="debrowser"; version="1.0.10"; sha256="1l3pc6xqsvhmjddv27pkndgf9dz529svyj4dkm166yq4vm6pcska"; depends=[annotate AnnotationDbi clusterProfiler DESeq2 DOSE DT edgeR GenomicRanges ggplot2 ggvis gplots igraph IRanges jsonlite org_Hs_eg_db org_Mm_eg_db RColorBrewer ReactomePA reshape2 S4Vectors shiny shinyjs stringi SummarizedExperiment]; }; - deepSNV = derive2 { name="deepSNV"; version="1.18.1"; sha256="150aqdhzzydn2f3nr8zq6r7iwsr8l2jpaig5c8h7li9rhlzjma45"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.12.2"; sha256="0m071s1qs9xv0dxb8applj0dldv4aji9vlrflbszw82gp60wzpvf"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - derfinder = derive2 { name="derfinder"; version="1.6.4"; sha256="1iyabwad32g0p69651zph79zi0rvv7bpdrx66qkp7xqllddhxi8i"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.6.3"; sha256="1d58n1xm1rpr65hg5p3y3abylhcp6ih5vnld8ny89492n0ssvf4n"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.6.3"; sha256="1mdcd0cxarbjwq4qznlks9mpfz9x4w2cd04jfhfkywpf45fkc797"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="1.2.1"; sha256="0cwgdqx07bflrpan49ra2qcxc5dhv5xq733gb3blcam7pvjj7mfw"; depends=[Biobase BiocGenerics FNN Hmisc igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; }; - dexus = derive2 { name="dexus"; version="1.12.1"; sha256="1ra6wxp3wvb9g5qpvh8bm0xb13yqjmnda60mq63hks6jdg2ippmp"; depends=[BiocGenerics]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.54.0"; sha256="0fbk3idxd9hzh9v8gk6dma7l4512k0682kcsfr72h8v0l587ayfr"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.4.3"; sha256="1gvw6kslpadlyhslwngjfh81pgdgzn1h8dpxq32l29fpyrhiig9d"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - diffloop = derive2 { name="diffloop"; version="1.0.2"; sha256="0kgzvidpm6zxgh7rjrh4fvzvvkg4p3nm6pa9l57qnb1223r8ygwv"; depends=[Biobase biomaRt dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats plyr readr reshape2 S4Vectors statmod Sushi]; }; - diggit = derive2 { name="diggit"; version="1.5.2"; sha256="1rpp472cx3pvhi2f1xr52hdxkd9s79w4wp1iy89plam86wrp0xh9"; depends=[Biobase ks viper]; }; - dks = derive2 { name="dks"; version="1.18.0"; sha256="1nzpjph8n9s4kzyyffj6k1pbrvgzryagmr10l97dh2j2qsydz5kh"; depends=[cubature]; }; - domainsignatures = derive2 { name="domainsignatures"; version="1.32.0"; sha256="1jv72qiq5hyajryf91f6mnvbqd4klwsb0viiw4ykid02cj14vwz1"; depends=[AnnotationDbi biomaRt KEGG_db prada]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.0.2"; sha256="11g57fwhq7yzrzb5wdd07xxb75plrqdmdlar2qvn6kmbi2knn7dg"; depends=[Biobase BiocParallel digest impute mnormt sva]; }; - dualKS = derive2 { name="dualKS"; version="1.32.0"; sha256="1f31qwds9xb0lymb1cdkspk4r65rm6y7v90zrxdd6j1vij42g6m9"; depends=[affy Biobase]; }; - dupRadar = derive2 { name="dupRadar"; version="1.2.2"; sha256="1n07sr5g2hr7rgpcybcaksrihyxlgyghy5l6ldmxqdchzrz90shc"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.32.0"; sha256="0g3lslnbbqxfbbyg16is33gd4v55cvqx00bcj0ig8w3xk31lpfph"; depends=[Biobase marray]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.8.2"; sha256="0bmwcx8gpr3a1fl4vz41s9k5rsi4l0jivsfxwvsw1kw87py00qvl"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - ecolitk = derive2 { name="ecolitk"; version="1.44.0"; sha256="16zsqrvbwl8ayh4x87ycnzv3iyqjixwd2rkc5xhk3ywd8khvdp0i"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.4.2"; sha256="168qgzszvmv9rjk999a1csvv9k27bgpjl67m9qi46y14y0mnlgmk"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.14.0"; sha256="14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"; depends=[limma]; }; - eiR = derive2 { name="eiR"; version="1.12.2"; sha256="00vzydf6nf6cql7qds5nxbw46cr5w4h02xiayi7ayg7nl54xdfa2"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; }; - eisa = derive2 { name="eisa"; version="1.24.0"; sha256="0pn6ilkvnji974j9qjhvqgfh7427nxaqwjvd22mplsnr81mfrr6d"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.12.0"; sha256="1akhzdk9kczy34fczff1j420682rkbniwcjx1bqrml75jd87xz36"; depends=[BiocGenerics Biostrings GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="1.4.7"; sha256="1310n4ws68xw0ymac59w172jd61s547wl6zagzkk2zhk00bfwfma"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - epigenomix = derive2 { name="epigenomix"; version="1.12.0"; sha256="0rhhnh835ah5d9hsv64i6y9hqb9yqmd15f7g4xkc7hws84jw3alb"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epivizr = derive2 { name="epivizr"; version="2.2.4"; sha256="0jvp08mfk05v2gmmxnbxbr825w2n75dc7jwvw88aymn0cc4bv5mf"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; - epivizrData = derive2 { name="epivizrData"; version="1.0.3"; sha256="101jn7fabzk3jkn25vn5r3g4iyjjm9qq8gdqq8wk45m0b5gglf7p"; depends=[Biobase epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.0.3"; sha256="1zzixb6gz43l9wlj4g6givax9rykb26xjx0i1xfnlwbxfl62z3wm"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.0.4"; sha256="0sd9vddihba3xwi2yjmzilklavggrwpavffbs9mhrjnh6hl62h73"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.6.0"; sha256="0f4q701yd8zghzxj6mj8ljd0h09q7f694mlm566p4867gc4iqs3c"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="0.4.2"; sha256="09fmys40b2vz8py69bblq7chxqwn34mcq460zqlxpj51f7d1zn1d"; depends=[AnnotationDbi Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny SummarizedExperiment]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.2.0"; sha256="1pcfbx120vyxvdw7hfaqmy1snc2ksvra59kz0qi0mjimvva69hd9"; depends=[Biostrings plyr R_utils Rsamtools]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.18.0"; sha256="008dvhcha5jjawzvxknqzxgv3cp0v1nxv60ngjkqczzihac66pby"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak = derive2 { name="exomePeak"; version="2.6.0"; sha256="1lwk5y3ma373mcr3l9cq9biq6qj7yc1lljmpa8qndwckgkg2dzl7"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; - explorase = derive2 { name="explorase"; version="1.36.0"; sha256="1aa21qgx59g8iipys9rm57ll3smjwz49wi7l2s833svd5z53amkf"; depends=[limma rggobi RGtk2]; }; - fCI = derive2 { name="fCI"; version="1.2.2"; sha256="1fhxhy6jkkly439l2sfz8mg4nknqgh167j6b413iikl2b7w9sg83"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.18.1"; sha256="1hm6zlcky156zb3wppmxhkrm8xjkl12kcn8hh2kc95k6hsajc6zb"; depends=[Biobase]; }; - facopy = derive2 { name="facopy"; version="1.6.0"; sha256="0wgd05sg3h9h8v7y9kva0v6296928bbzbifdkfp2910fsjw8pvdl"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz S4Vectors scales]; }; - factDesign = derive2 { name="factDesign"; version="1.48.0"; sha256="1cxyzxxz0cli21bqcsg2arcdqnimczql8d47skdwv449mxgcan9c"; depends=[Biobase]; }; - farms = derive2 { name="farms"; version="1.24.0"; sha256="06swwfjbaq2xqbkrabv4jk4xxnxkmvjpx3a0rx0mi0j7fv8i5xs8"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.8.0"; sha256="1d7y120sxh3dqfyhpc4bayplrfwvarfj31imrad3h8mpk6j7a3jg"; depends=[Hmisc LiquidAssociation WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.18.0"; sha256="1dnlws7wv9dl5adimzmzcmhg7zlc7xrfxvbzdf86hnh6ci0wvxji"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fdrame = derive2 { name="fdrame"; version="1.44.0"; sha256="16dlcmn8ldh4irxbczr0pyljj98rgjz6xb084nz7gqg7w5mfdakl"; depends=[]; }; - ffpe = derive2 { name="ffpe"; version="1.16.0"; sha256="1nhi0xbicw7iglizq3kxhywmlmyxaj30c588ccaf039v9p0rx165"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - flagme = derive2 { name="flagme"; version="1.28.0"; sha256="01andc84ls5r3pa0m63mxl3f203kf5i6z00hj4fs1c0999jyv14x"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flipflop = derive2 { name="flipflop"; version="1.10.0"; sha256="1pm64f58m3i4vq95s6y4kan2cw5zc70xjh1z3h6343jqn9vfpnxv"; depends=[GenomicRanges IRanges Matrix]; }; - flowAI = derive2 { name="flowAI"; version="1.2.9"; sha256="1gb3a8f4xsjwspyacdbi2h5kicsawh20dd22xnpg8nlviypqz912"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.10.0"; sha256="1vvggb937iabdn9y6z81sc5vshdyi9017ivz0mf5npi09gm02xb5"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.8.0"; sha256="138h229ny5k9abclby79phlywyckgkqdkd02sdg16028amckmgq7"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.6.0"; sha256="1gy7cgyy1ifn989vgkik3b633li6ir3kznhb4wh21wqvrfy9d39n"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.10.0"; sha256="14z6pyjc5v5zi3l9qiz85yrbhaykyfw77vmvb4nzrvm6mdqm1z5r"; depends=[Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.10.0"; sha256="1slf34rss2l1faj2kszgaiafaj0n0wddfgrnpylav62lfricyzih"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.10.1"; sha256="0y5mylb09fnyk8a8bhr8g3xpzz3l8pcs7xi91gdxjqamkqi8v700"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; - flowCore = derive2 { name="flowCore"; version="1.38.2"; sha256="1pspsjmvc3lk06i0mrccdpmp0snpb79ng7dip4lc5rbbr9764ps3"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.8.0"; sha256="1vj97swrfqh3v50js0hk1agfnjzdawsc0pjrvcncs3avh9awag1r"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.6.0"; sha256="1x9jfkv4s5l1pa4cjm5d96l1s9nvxjv8vxlkyax33h009cci4yzs"; depends=[car flowCore GEOmap gplots RFOC]; }; - flowFP = derive2 { name="flowFP"; version="1.30.0"; sha256="1nqqm0zmv9rf46dflshmhcgwi15kg0f7szljxm4l4j4vg377hc0w"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowFit = derive2 { name="flowFit"; version="1.10.0"; sha256="0wfsg359zi7bi8wgf5zfwj3gjk5sghynsd9la5x1idsm2hfkqh7x"; depends=[flowCore flowViz gplots kza minpack_lm]; }; - flowMap = derive2 { name="flowMap"; version="1.10.2"; sha256="11fkd89rcwmzfln375p9hgv1z79ipvvhha7krz6wvi0z63lv1131"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.8.0"; sha256="071fkhwfwwabbrb1vmwwdvg96lizyf67wvf6g080qac9jsqq2xid"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.32.0"; sha256="0z06479v8xihjyvb8y615yqkd5mkw2879z7qciwkyc32dy3kp6zs"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.20.0"; sha256="1ibclh3wdz07rqzri61y01ijvrrj8bjmv3l9ddlzgzs6wk07r842"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.14.0"; sha256="0ypp5qhl4wxfsbz64d7zvkk606h7wniz4s01zswv61vhygjhr8p0"; depends=[]; }; - flowPlots = derive2 { name="flowPlots"; version="1.20.0"; sha256="01gjkks9cvrjzacpynsv5i9ir4569b7q9yzfzk337xhz5r140brh"; depends=[]; }; - flowQ = derive2 { name="flowQ"; version="1.32.0"; sha256="1bf5avnjn5vg2569pyvrrsq1jv6n0sslyxm9rav2mj321smy05lm"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; - flowQB = derive2 { name="flowQB"; version="1.18.4"; sha256="15gk1nbn4yhjw7378d84y3lh4kr1p2bxdra1wfd8scz7nyd6q8kr"; depends=[extremevalues flowCore]; }; - flowStats = derive2 { name="flowStats"; version="3.30.1"; sha256="0sblxshpkw9sx16p1ni9wg6hmhdv9q5i8ssccq41rhrgnyiahacc"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS]; }; - flowTrans = derive2 { name="flowTrans"; version="1.24.0"; sha256="1ri3frs5z702scn88zrymhm8slwl4g1273yn14w065vay9gq2klr"; depends=[flowClust flowCore flowViz]; }; - flowType = derive2 { name="flowType"; version="2.10.0"; sha256="0w0zgddk89bavjhjnkjv7bmqpg2q3d9fxadll4da2dsqzg4nwpy2"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; - flowUtils = derive2 { name="flowUtils"; version="1.36.0"; sha256="1vd01iw2ki7yqq7g9islqy3z8ks6ciih7j2ja2gff31kvn95lyyc"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.4.2"; sha256="0d0xrsscnsxl3b2rm7rhvjm0rhca9x6hckxq5hvnmwdcnyswr2jr"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.36.2"; sha256="1b1sp46lbkdsyx43g3qxx3ggvj8hy17bg71n6l8r6gh0i39fagqn"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="3.18.11"; sha256="0i16fq30lbrjq3nkd6lkkz9c9p2azprnsjw9bm0y01wkzjlhc9hz"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz scales stringr XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.6.2"; sha256="0p1yb5gz2zyc6g9k3jxsbllvysj65srhnj1bsh57qmk7glkda7wl"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; - fmcsR = derive2 { name="fmcsR"; version="1.14.2"; sha256="07c14iix1c31axskgxf8ffwyrryxpdmsq33nwfpv20951c3n9zc1"; depends=[BiocGenerics ChemmineR RUnit]; }; - focalCall = derive2 { name="focalCall"; version="1.6.0"; sha256="16y4ry894ricj3jyq26y5kcyb90za2f7bpc8n9qxb5b69179dsdw"; depends=[CGHcall]; }; - frma = derive2 { name="frma"; version="1.24.0"; sha256="0rglkly4b0n9hsw47hznymmzk1g6c64qk12bkhfj6hcp8hg4swss"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.24.0"; sha256="1wgybdhqvh1ip9qiqcgnsav0bdm9lspxgb611vh7nga4qlham2y5"; depends=[affy Biobase DBI preprocessCore]; }; - gCMAP = derive2 { name="gCMAP"; version="1.16.0"; sha256="0914vnpzy5kmff9d09x5bdisy01r0j482hm0jy3d7v1c0ij57psl"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; - gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.12.0"; sha256="1ba4ayc2ylyrijym48lyrmkn2az3x42n8q0cb7snwb9wc8c4pn5x"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; - gQTLBase = derive2 { name="gQTLBase"; version="1.4.2"; sha256="1xhpxpjhnjzwwpmsm9v0jxqikl52fwaw6h8lyp6svzjwcxni863h"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; - gQTLstats = derive2 { name="gQTLstats"; version="1.4.3"; sha256="0lbhmicn47zqblnanwd8j05lnmcgmxz21n7r3fr1vj3wigkl2p77"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggplot2 gQTLBase IRanges limma mgcv reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - gaga = derive2 { name="gaga"; version="2.18.0"; sha256="0pp0k2gqb5ysxxgfw4551lc87rd5b5n4fxkp0c59hdiwqr2gm9jv"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.22.0"; sha256="1hcl0ipripvkz8i9bk6vlb0qhx7mq487vay7668h4byjdxw33axq"; depends=[AnnotationDbi graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.40.0"; sha256="0xs2rblfh4wa05jdb6fjf8mgqhfwgjzbrf8gq9nsh8lgv4a8azz0"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.16.0"; sha256="14fnwf7rizc8vp7mjbnw16ar5l21kkgggxn1rrmwpsjd321rzyc3"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.0.2"; sha256="00xpv7aqx0bh9azmpkxlpwjn0kp0wijpac9ssz9ic9chs2p9b4ga"; depends=[]; }; - gaucho = derive2 { name="gaucho"; version="1.8.2"; sha256="0w09hd7r1y41yv3fyarzrkqw3gzzqk6qplbqrdd74hz7iq4rxcqg"; depends=[GA graph heatmap_plus png Rgraphviz]; }; - gcatest = derive2 { name="gcatest"; version="1.2.2"; sha256="04il1idfisf99d7v50gpk5dscn9vs787mxw4h3ga9f5a73ii1hn9"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.44.0"; sha256="0zvv9wqv5cxs203cfnxgvlf7xmdkcm66jx4jjdamjvvlnlbgbvd4"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.8.3"; sha256="1cvg87fzgd1fzdphxkl5vh0frbjwrghf2i4hrwgh9h9pszkjpirc"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.12.0"; sha256="0i5pbcsz1y9z75yvc7fdk7820y1hmbr28jfmvm382c43namcki55"; depends=[Biobase e1071 EBarrays minet]; }; - geecc = derive2 { name="geecc"; version="1.6.0"; sha256="11a3dlgzaagb6iyx8pa38kxv50wvb1s96m36w0azcg1z3z77h6yy"; depends=[gplots hypergea MASS]; }; - genArise = derive2 { name="genArise"; version="1.48.0"; sha256="0zyxnx2xx5ywz3cgbmkh7ay0fwgmgn320knbs8mz8bniilc2mm0b"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.0.4"; sha256="0x6m9qa61cka549gd0fvywc63rkj2afxhgyfjmyfg4x9dxdxc670"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.44.0"; sha256="0hij3vx023z9wc905hhq845wya4ivapnpf5cp57vvcssxxks91nl"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.8.0"; sha256="1nrq2sfazs0zpnlh70lsnalvgqb3z8sqr3fryxqdb4vp26alddbk"; depends=[GenomicRanges IRanges]; }; - genefilter = derive2 { name="genefilter"; version="1.54.2"; sha256="1hmz6as0njvrsrdbgmk72jyclnnqvfdvp6kqv456h43ldq2ajfv5"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; - genefu = derive2 { name="genefu"; version="2.4.2"; sha256="09priw4chfy853dadylfk8h2jjwajccq4kcyjxdfycd8np02f6sq"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; - geneplotter = derive2 { name="geneplotter"; version="1.50.0"; sha256="0lvrywl0251g4y0h0qlgkbg4l83ja5544c85z1wj30qxiy77iqc2"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.24.0"; sha256="1wd21qd153lnq8z69mia84ij8v9323is81njxivh4lqcrr2m0lgr"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.4.2"; sha256="017hxh3yhizlsswd2vw8504arkckrcgq5zraiw67lldq9wzs5qzg"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.28.0"; sha256="0ic0h1jd1qddqg90j7i55cyjc28jqc1s1qvbjdv0xi2zfl0yfi5g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.2.0"; sha256="16gyr1wb822hw92cf00njkgls1i718n67zprpc9q364b9js1095g"; depends=[curl readr]; }; - genoset = derive2 { name="genoset"; version="1.28.2"; sha256="1zrng0c0yws8hlhz09gm68dlc6xk5kmjz3xxqhfg5dr56sdryg1y"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.2.2"; sha256="1asmy822hb6i02jgbx005zb7p02zladhp5zvbgi3apxy9h17fwlw"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.0.0"; sha256="1030gg9cqmzz4iwssv9y0ai42ar356w6y61aj96p3901jbq78v0v"; depends=[Biostrings e1071 effsize ggplot2 randomForest]; }; - gespeR = derive2 { name="gespeR"; version="1.4.2"; sha256="1npbfm20cbq9raq9d26biy65c1ag705k1s068yc9z6j51w4a9h8m"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - ggbio = derive2 { name="ggbio"; version="1.20.2"; sha256="167ppjb4kkxhgxmlzfcgwa7ggm6mkfg2b0z2q1iav0kc9sdy1zz4"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.0.6"; sha256="1xpavy6dcgq5zwlyi7wb0ldavqdh74bkg2plpbp7lmmn496w26n6"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; - ggtree = derive2 { name="ggtree"; version="1.4.20"; sha256="15fnkbq9jcw5n54z5vm5dj9giaxm0a8w3017gkd3klyywlcpk7mp"; depends=[ape ggplot2 jsonlite magrittr tidyr]; }; - girafe = derive2 { name="girafe"; version="1.24.0"; sha256="0qr0mv1biv6xs86sc3kv97p19kc12hvxa96mhbpw4qabbmaaadh8"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - globalSeq = derive2 { name="globalSeq"; version="1.0.2"; sha256="1hbi19i0jyg3axjgmvakdckk5hdbm6p3hxxnqh2xgnf7qwkj74v3"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.26.0"; sha256="0myg87l3aqrk03qiibzya8fx12xn7w3myizhhvbd84v86xgjl8dp"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.14.0"; sha256="034z2z2gav7nny0c9npn9h71hlq15ag866fbab7ii8rqvapy6vh0"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - goProfiles = derive2 { name="goProfiles"; version="1.34.0"; sha256="0m2cki0mrf874nhj390zb7i41v6a9lrr22sx2x6yq22qs6067p32"; depends=[AnnotationDbi Biobase GO_db]; }; - goTools = derive2 { name="goTools"; version="1.46.0"; sha256="15n35kp826lgp0bl91p1zxy65a7vx8ln895vqp31ss06hqlgrksf"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.24.0"; sha256="05zm23bj1i9al9bsg870pyk1r663vsv08sz9wn5dmriwv9rq2i4b"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpls = derive2 { name="gpls"; version="1.44.0"; sha256="07v0k6bsf35rkj7irsz7rwfba3fnnszy2kx6n0qzphlcgwda94hx"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.16.0"; sha256="103z7bsjqwc4d4mimaavrd46v8l0pchrahhgqkkpyjxq6ibk7krw"; depends=[gptk]; }; - graph = derive2 { name="graph"; version="1.50.0"; sha256="0ys5s19m5r30rlr0fnx2h0z2qw7n2xrad4l2yfb1bbrk8dwyf4pi"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.18.1"; sha256="0s9si7jz044nv80r0zyy4kvc0sjd8mckhnhn05bb16ym5650qg2r"; depends=[AnnotationDbi BiocGenerics graph rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.6.0"; sha256="1l9mcyzyc548114ysb9r0q7hgzw3yy7gpiahrzkzj6hblc4f1jyp"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gtrellis = derive2 { name="gtrellis"; version="1.4.2"; sha256="133wlm7807rz9wa37prjrwginwlljbyvf5j7zlslzihpfj3b1q2n"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.4.2"; sha256="1q6wfp234c2ja2k3r2m21mfgwz3dwy2ayml9vxbdhgsi496ixray"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.6.3"; sha256="0x4frfkx6l30ns686ybqqhqvxn3x8gwm5m9zbcvnk8yd864jxfwh"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.14.1"; sha256="1fmlw49ab6b5ry7qsh9riismki8slh4kym4agpkfbdj4qjhicdwq"; depends=[Biobase fabia]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.6.2"; sha256="1p6w035pm6ikkf8nv1lah0055rblmj8313bjwxkqm8m5g51imz7b"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.8.2"; sha256="18iq1f6hvxi3n7bm25np8daa5bvmyayhq47w2qf1nbbl7j8vyi4z"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator rSFFreader sonicLength xlsx]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.2.0"; sha256="0gnc9cnwy9ji8r7jiy2irsikb06v044cmhpjfgphsqchaf53h4sv"; depends=[fastcluster fmsb glmnet]; }; - hopach = derive2 { name="hopach"; version="2.32.0"; sha256="15x6mrk9f0vjbddafzr8g5p3j1a7z5ws2a361nj83djnx4z7mnh8"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.14.2"; sha256="0rmnwrkblljlpa1d19sxjwqw6hcqx6aajl2vv8g9qlcwklp0igl8"; depends=[]; }; - htSeqTools = derive2 { name="htSeqTools"; version="1.18.0"; sha256="0n05bsqxmji335nkfg7a38i91k8nf7mf1vkhi8mg6mags7sqysl2"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.24.0"; sha256="1bng0b48blj3mmga799j2103lwdnrh1shbp0jjczzyrhh8l30xby"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.44.0"; sha256="10vyxw05a6asyvphzxdv10fl437nqwxcy8z2maqijxhhkrq91mz9"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.16.0"; sha256="0ggcpygyf4x39ky1y0p7f67i0knnhrmpab20gcf5cs5239l1k369"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.16.0"; sha256="1776i6jsgfhwmbzflx487l7aav5a9xa5v3md6wzwkalmq4vz1h0s"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.12.0"; sha256="14rmnzzq5ix2in0hhz36nzixvm51jgsrhrzp28767vfrw3d59dqn"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.0.0"; sha256="035i02mi92kqsrn1n81j7bqxzf1czra4fdrfya0ihjyvjl363hsx"; depends=[]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.0.2"; sha256="16f7vdlwnnlk73lwi3y5yvcb5ww9qkc6ynyyafi73a4mj4vyiw0x"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.2.0"; sha256="16rr1l1s0kbhk8xhbr4cac0xb7sd9p92y9dm8hyi5hd65w3yryzc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d vsn]; }; - iChip = derive2 { name="iChip"; version="1.26.0"; sha256="1271033d2rfj4ib50955rk3bspj78h1aslmf8pkfbmb2y1pm1jz9"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.8.0"; sha256="1ryalbvf24pd2lk3brxy6zb616n5sfqn484lxgsl04mb8k4qppzd"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.2.2"; sha256="0p8nhybxn82c82i6z7hy4ddlnkrw5r3zsal67wkvbxw40h0ljpmx"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.16.0"; sha256="0qh1fikcqkl2hxqfkgxy16nlzqnqkkpz93b81kbpj1bgb4y3amnm"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iSeq = derive2 { name="iSeq"; version="1.24.0"; sha256="0sbnnr0mcnidvk3bb303a3i4n5f5lf3c2p3rnaj1m96msfjfhfmw"; depends=[]; }; - ibh = derive2 { name="ibh"; version="1.20.0"; sha256="1fx1bb14z0is1zbarxy3bd7ynrlxf97z2501k2ajq5c5ijm05kkr"; depends=[simpIntLists]; }; - idiogram = derive2 { name="idiogram"; version="1.48.0"; sha256="0p0ji1yqp8ygzm8bqdq5zw73rw1n5c9y104k2bnf90vp9q8428kr"; depends=[annotate Biobase plotrix]; }; - illuminaio = derive2 { name="illuminaio"; version="0.14.0"; sha256="0vywygdg57msqm1a9m5ld40rf06fir686gc0h5ygs9gcs2rm7979"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.22.0"; sha256="0rrjwf1yfdln7xwsizssjfavr4dwmdm1bwys09bk8ja63d5s9zb5"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - immunoClust = derive2 { name="immunoClust"; version="1.4.0"; sha256="144nhjg6r3jjn7ws0gqfhzsfhkx4b2azvijrjqndr958bip81qnr"; depends=[flowCore lattice]; }; - impute = derive2 { name="impute"; version="1.46.0"; sha256="0v9ibgv8kp8il52miz7b7z65mv6irqxylx6lfzkxgvxd970dgrz0"; depends=[]; }; - inSilicoDb = derive2 { name="inSilicoDb"; version="2.7.0"; sha256="14sv2rwfjv3h5l9qxd4c1wc83gfghmwbwds92g4wfvflbda9i6g8"; depends=[Biobase RCurl rjson]; }; - inSilicoMerging = derive2 { name="inSilicoMerging"; version="1.15.0"; sha256="1dvbkjn5pj6w6ixrkvljbz843dsmihcnhbs6vm6a1iyc2l6dx41k"; depends=[Biobase]; }; - intansv = derive2 { name="intansv"; version="1.10.0"; sha256="0fgc45gaqm2vpvcbvwm54w93i7fmp4pv365pqqcq6sy3lilzxn92"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.10.2"; sha256="1rvqh3krhcmqk82ykhcpqm93xci5bsh0xg8dw45jb80ldfz00nrh"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.10.3"; sha256="0gn19dd8m8jc8cjkwy12m7g7mzbxpfg2lhw0pklhbb00nq1hykqa"; depends=[BiocGenerics shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.20.0"; sha256="1sjrpcccnnk2jfiwxm1ly0mzj8h6z3dvv9r3sa2ph5k4v13rn3gn"; depends=[haplo_stats]; }; - iontree = derive2 { name="iontree"; version="1.18.0"; sha256="07j97v062sm1dv3bz7n5s7z5vimizkmv5g8ck4irvdjwm7my572a"; depends=[rJava RSQLite XML]; }; - isobar = derive2 { name="isobar"; version="1.18.0"; sha256="1zckdyaclbnmyhmzavlr350q1pqqwrl9s0cdplfr1bj6hjififc0"; depends=[Biobase distr plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.0.3"; sha256="1kclz9kl3pvg2djm6kkxwg8nds33pryf7l27ilx51hcarci78gkq"; depends=[BiocGenerics DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots IRanges plyr RColorBrewer S4Vectors SummarizedExperiment]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.30.0"; sha256="0x6sd1zdw5lr5r5fw3xig1466cch3snradcms8dl9y1dwnv7vr2v"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.30.0"; sha256="0vbvkqlj2facp4wfww650wm9m3czh33rj99d7mmi9h2qsvmbza21"; depends=[BMA leaps survival]; }; - jmosaics = derive2 { name="jmosaics"; version="1.11.0"; sha256="1wg8mqh72dqwzqyx0wr1y0wqqmy10qv7fx0ybb78fh76jdwrq4lw"; depends=[mosaics]; }; - joda = derive2 { name="joda"; version="1.20.0"; sha256="06lli20fxdvf9836xmg1dkf7f62khnd4lpz9c3xna9wqawcdk3wa"; depends=[bgmm RBGL]; }; - kebabs = derive2 { name="kebabs"; version="1.6.2"; sha256="1bc5qg23h0f648l2xpizvyagd6jwwhwj1hw5s70jkb42qfvgpyr5"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.24.0"; sha256="0340gpvjpnk00iyn06bp0ad1cibp6b0kq4gk143mvkcvyk8vhk01"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kimod = derive2 { name="kimod"; version="1.0.0"; sha256="05g1kvdfnhb77iwnad85214lf2q6lmrsz29lgc95kwyn62r60fj8"; depends=[Biobase cluster]; }; - lapmix = derive2 { name="lapmix"; version="1.38.0"; sha256="1k4057cykcm1nzzp09yb31pl2w9ii047cc4iknndklp3827riyc0"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.2.2"; sha256="1rr01m9dgzg3lxnql0fvak89rnjwnlqxclq70wks1j6wr5ggyxqi"; depends=[Matrix snpStats]; }; - les = derive2 { name="les"; version="1.22.0"; sha256="17cxxbf5z2v5ada43lj6blb6c0wcfp8izvgyi58dv1rf8nmp77w7"; depends=[boot fdrtool gplots RColorBrewer]; }; - lfa = derive2 { name="lfa"; version="1.2.2"; sha256="1xqjj7q70qxx952yf28s2ry03mj4csbri21gi7rl5ixi0581ji3a"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.28.21"; sha256="1dvisifd2rr7s1rrsqj5vrv2qcg4la4yi2ajbn0zkk5z81ffxv9f"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.48.0"; sha256="0rr6202jp7qx2csbvqr6qcg8584v9msmiqgcm6r1wmrwggh7nksb"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; - lmdme = derive2 { name="lmdme"; version="1.14.0"; sha256="1ng0ng1pxdrxpmmaqzg8dxl4wics06z9g28zfgpdzq1hacckspd4"; depends=[limma pls stemHypoxia]; }; - logicFS = derive2 { name="logicFS"; version="1.42.0"; sha256="0311x3miljdg9d1fw0x24il4c2i0d799z3si44vw7r6xxws11fzb"; depends=[LogicReg mcbiopi]; }; - logitT = derive2 { name="logitT"; version="1.30.0"; sha256="16fqyk0kkidz7as21zslii97mhzclmf7pd5bimvajv9hbx7m1284"; depends=[affy]; }; - lol = derive2 { name="lol"; version="1.20.0"; sha256="1vp25q5a1q9fzagy85lb0ab3iiapj4ilas5wkjxavh6bx6198z4w"; depends=[Matrix penalized]; }; - lpNet = derive2 { name="lpNet"; version="2.4.0"; sha256="02bq0fw0hq50y591ys85lk50hy2ad72izrvf7wds1x4c3sgcbhnm"; depends=[lpSolve nem]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.0.2"; sha256="1ckijz59g5sx8phwg28xv17iwlja6mdnffnzrwqg1f17kc423vzm"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.24.0"; sha256="1p8w6lfwlzcizc6517hb85ih8p9wzqklk2s7qsacsprfwh1h7wvq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - mAPKL = derive2 { name="mAPKL"; version="1.4.2"; sha256="089hsy6x144qrwqd555py8zlb7zka4yjf1qww0lx7kv131295wkf"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.26.0"; sha256="1c57c3dfaxdzalqnsfg9ac5kppn8hdajnxmy58rzma0509k9kjkd"; depends=[Biobase oligoClasses SNPchip]; }; - mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.6.0"; sha256="1p2wk16db2g2ns6vvk7ms5s10n3xk37nbbpdgjrim9b1jxiv7mf3"; depends=[GenABEL MASS outliers qtl]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.42.0"; sha256="14i8q92jhp22r6mkb2813507q270z6jhpq1qvagaardvhvaqjqzj"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.10.0"; sha256="0w3csffy6285d3y9lj8b7i59x5x4zkgwf2pl07y5vx7rdpjg9rfr"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.44.0"; sha256="05piq7h2zg8pgxd29xgk346ikbbam02fsg8i4k9q55i5bnx7ifmb"; depends=[Biobase limma MASS Mfuzz]; }; - maanova = derive2 { name="maanova"; version="1.42.0"; sha256="0kypia11sal5gmiykapzaly18qsrbv4qi22ilz5c1plrk65rz0li"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.46.0"; sha256="137g4wmdyzfyj45gjxla0caf0pp0gbns30v521j7awlxq8rsd6qh"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.46.0"; sha256="1wj7pfajhwhl6gbja4hr8jlzciighgzhhvy8553pkj4mnrv204r3"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; - maigesPack = derive2 { name="maigesPack"; version="1.36.0"; sha256="061bp7mqi1n0c1vcbnbmmpxbj2lvjvbcny4vh55klqw1r7wqjbm6"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.48.0"; sha256="0s065hgmrinrixxc813114cqi91n0s10ngkbm8r20q5jm3xfsiqd"; depends=[affy affyio Biobase zlibbioc]; }; - manta = derive2 { name="manta"; version="1.18.0"; sha256="0kqic6985zxz9hwcmyhc0px6ggdmshbsz4x3xyw9mc1q2d6svjdp"; depends=[caroline edgeR Hmisc]; }; - marray = derive2 { name="marray"; version="1.50.0"; sha256="1rzbk40zzkr7xll5dzfy92jjmf0qkkw9l806kaz1mwfal8qka87m"; depends=[limma]; }; - maskBAD = derive2 { name="maskBAD"; version="1.16.0"; sha256="0s1l2s2niqsvjk2083i8141mrvf8ardxg5mg7w742r5ga0m469sq"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.8.0"; sha256="01yhz3cf9wgxszrcvxkyqj8ab8a5p52kqj1zg499147kaf8hciqn"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.14.0"; sha256="1fnxyig4wmhaymbn4adh7pxxk9qqck796n34w4lrrx0ggxwlz2g1"; depends=[]; }; - mcaGUI = derive2 { name="mcaGUI"; version="1.20.0"; sha256="0akv7l6sy6nvj658q8pjp7dhkkfsx7x9iww9mv0jwyfdn811saa2"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; - mdgsa = derive2 { name="mdgsa"; version="1.4.2"; sha256="047syngjdzjpad3iqy0s1a6f5pyl3rmsmadasjzc4f3l7xyq6jmn"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; - mdqc = derive2 { name="mdqc"; version="1.34.0"; sha256="0xm6v7irlkhbi1ny93fglhixajbp41lkv7yjzr8ysszvdakwrmmr"; depends=[cluster MASS]; }; - meshr = derive2 { name="meshr"; version="1.8.0"; sha256="171is2w5d7i26mmdncz2wx3y48dnqhbzgskwsn3l3c1acmnrpbr6"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; - messina = derive2 { name="messina"; version="1.8.2"; sha256="01p0zbmay73v2ba41fs0hmnn47q7flggc0y0jhgf22cpjmsqm0qj"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaArray = derive2 { name="metaArray"; version="1.50.0"; sha256="1kfhiplzxvz0j99h2kigqfwpgpqzp17yl3dq2qw51s99257gwjvd"; depends=[Biobase MergeMaid]; }; - metaCCA = derive2 { name="metaCCA"; version="1.0.2"; sha256="0g345pxmlhkxdx8fm725y52vx8zd24wi5rxhqh5xs087dqyzmy6k"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.8.0"; sha256="1skvlqz8q9k3pqibbjyr9ajx9x1p11649lmh8f0sgi6y4xframq7"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.12.0"; sha256="1x398spd55qwj4pj5bfsmh0skj4gqy7h4dv16c65lk7r9qmkg99s"; depends=[NOISeq Rcpp snow]; }; - metaX = derive2 { name="metaX"; version="1.4.2"; sha256="0d70jnljn2r26vrsyndf8pac0k731q38l8g84sb932ff7w48sqkf"; depends=[ape BBmisc boot bootstrap CAMERA caret data_table DiffCorr DiscriMiner doParallel dplyr faahKO ggplot2 igraph impute lattice missForest mixOmics Nozzle_R1 pcaMethods pheatmap pls plyr preprocessCore pROC RColorBrewer RCurl reshape2 scales scatterplot3d SSPA stringr tidyr VennDiagram vsn xcms]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.6.0"; sha256="0shgzl0k2b3ig6gycgl4xf09qwk288p61dqd2gi231p4q825sc5v"; depends=[Biobase Formula multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.4.4"; sha256="0p8d6fq1zn0k8r7fb6iz80azk866abw1kqahx1lx35vgaxxm9smx"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges matrixStats muStat R6 Rsamtools rtracklayer]; }; - metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.1.0"; sha256="1z7wj7zglm05ny0caqkj8h22sxgawrh295i4jlis6y39lhwbv6bj"; depends=[Biobase Biostrings dplyr lattice lazyeval magrittr RSQLite ShortRead stringr]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.14.2"; sha256="08iwmv4ggsw98h6pf26dzbpb5qg77pcmjapxr77z4mhcram6yaxi"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; - metahdep = derive2 { name="metahdep"; version="1.30.0"; sha256="0yifwp5cya5j8c1kl9a8nfqgn2l8imfjb1gzcxf32c53jwppwbf9"; depends=[]; }; - metaseqR = derive2 { name="metaseqR"; version="1.12.2"; sha256="0ycfqjxd9vyx4dky42yxg3754lx37s1yc3r1nr774r0kbzaykbc3"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; - methVisual = derive2 { name="methVisual"; version="1.24.0"; sha256="1g4ijymr6bv384vcsdpkamn5mk0gkd5mf7yiyjmbsgzwxx6mrpii"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; - methyAnalysis = derive2 { name="methyAnalysis"; version="1.14.0"; sha256="1nva4c9f30x5ym3cd2f3r4dxksihdaqzzskkanb7f6n89xdl512h"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; - methylMnM = derive2 { name="methylMnM"; version="1.10.0"; sha256="1944palwb2hfvsi8j4384fhjmqfk41fihq2w9y3cff0993j5i8cp"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.6.2"; sha256="1mci0y9dy1lb5vv7makh4mbm4h5ybdi0ay6qqf343y56zpjdlwmm"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.18.2"; sha256="1jxmk1r44x847sny1jrkka20a1z27yh7fv9pwgaabl5z8vxhpbyy"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mgsa = derive2 { name="mgsa"; version="1.20.0"; sha256="0zy1mmil5s2jiwknixavxhn05b58qyr87gc1yd7i86z7d0f66zjh"; depends=[gplots]; }; - miRLAB = derive2 { name="miRLAB"; version="1.2.2"; sha256="1wd591kd12dlj8dzxyv7dadi5clr0l6ar9n6lscc2yr16jwlwcv6"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.0.2"; sha256="1nc4qgk5sr1l007q5rqm2492azbbmffd7y17r0kfscr2pv67cs4x"; depends=[AnnotationDbi DBI miRBaseVersions_db]; }; - miRNApath = derive2 { name="miRNApath"; version="1.32.0"; sha256="1cijz8wbaq0wg6f0qf37b65fska619fw8vxy57anm258nasi1z8m"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.6.0"; sha256="0dbqh8jwzqhdjs8gd8095qzhbwn5c8ahqn7qq0dhl1yhhv3hpbw5"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRcomp = derive2 { name="miRcomp"; version="1.2.2"; sha256="19x8ldv1bdnbmjwjaicqmaf7iy391n42h5y1lckjlbcsxbss84bi"; depends=[Biobase KernSmooth miRcompData]; }; - microRNA = derive2 { name="microRNA"; version="1.30.0"; sha256="1y997xxnf6b3magg2jkg26pa6sibz9c30bcc2131minvw2a1x7i4"; depends=[Biostrings]; }; - minet = derive2 { name="minet"; version="3.30.0"; sha256="06ya26k7k8a3pphqfr93xcplrl2di895mnqmvywqg17lgn2df557"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.18.6"; sha256="1mbrjmmjib5fw8jvk9fw6gfwfcqwi87qgwjphsvdfwhczlzkii7j"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter data_table genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.2.0"; sha256="0axnmf01xdbf50jzi16awx4anj44diyshzhwjy9akcq0fw3x9bs9"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - missMethyl = derive2 { name="missMethyl"; version="1.6.2"; sha256="02i343siji4z48zg8p9daxl57smgc3myx2f0s67mmzp59gbabz7q"; depends=[AnnotationDbi BiasedUrn IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; - mitoODE = derive2 { name="mitoODE"; version="1.10.0"; sha256="1vgywn96b1p6yndhxcx2297p93skdpw8r7yzfz6ph828camw7g73"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; - mmnet = derive2 { name="mmnet"; version="1.10.2"; sha256="18ypmvx4pjqv40k2jclq92gl2cw9qpkakifv2jnaa27qnp1x9ivc"; depends=[Biobase flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; }; - mogsa = derive2 { name="mogsa"; version="1.6.4"; sha256="14mfnsylckgv01k8g2hj5vxbfiih0d0jk77rb0r8p21lcd25ls7a"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monocle = derive2 { name="monocle"; version="1.6.2"; sha256="1j65kdzrlzyfzv1in0lswqksv3rs336jddnpxyw8k27iz343dvvf"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 HSMMSingleCell igraph irlba limma matrixStats plyr reshape2 VGAM]; }; - mosaics = derive2 { name="mosaics"; version="2.10.0"; sha256="0kazrdn03a5969d7gy86wfvskpw3bmfib7pbd1p59pic5nnhqznp"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - motifRG = derive2 { name="motifRG"; version="1.16.0"; sha256="1ds22paqc0923y6z1fy0arw0wxvvmglfvfgarhywv1qywhq68mbq"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; - motifStack = derive2 { name="motifStack"; version="1.16.2"; sha256="1a37h7ryj9hj43mb1ynrsi5ypfaw2cr1cfmccw44bwf1fn5grzl3"; depends=[ade4 Biostrings grImport MotIV scales XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="1.2.2"; sha256="0zfvig6rf4ix5hh6mk5lada9sh7cr6nbngqr6gqgm5hy5bvkn51m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; - msa = derive2 { name="msa"; version="1.4.5"; sha256="0g3p5kfyszll09dwdfjwkkdyhnfj1ymk4bfk1j01vlzqhcd3d2hl"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.10.0"; sha256="0spbbj1vxyyhmhbg79sby9i7hw8lxzn95qp1qpcds6pzbi98555p"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.10.0"; sha256="04gdsxdpmrpj8nzm5jn96dzvyxrcjj29nks4n0rx53lqada3zx8y"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - multiClust = derive2 { name="multiClust"; version="1.0.2"; sha256="1a4brwg01ni96p661aqvaivdrfg6x7iwv5sh1303bm7fzr8kyhhh"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiscan = derive2 { name="multiscan"; version="1.32.0"; sha256="0kxnnk55605km690ikfglbnc39kps4a26r2v9wcdfngza0jcf4xa"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.28.0"; sha256="11z0rzfzfk2fgl0l7hv9sb6g19d9ixkn634fnfb2pz141bbsrcwd"; depends=[Biobase BiocGenerics MASS survival]; }; - muscle = derive2 { name="muscle"; version="3.14.0"; sha256="0h9czpi4qvl94kgdil6c263k4r55a0baw2h11qn0i8vy6szgb4l0"; depends=[Biostrings]; }; - mvGST = derive2 { name="mvGST"; version="1.6.0"; sha256="16gdxqghch4422vnjf1phzfrdp63043bag2jmhm3yni0z92b47p1"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; }; - mygene = derive2 { name="mygene"; version="1.8.0"; sha256="17a5q7zbsm1qk7asz4ddf5vgyxvfsxkpxhn52p5gd6aikv5kjdqr"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.2.0"; sha256="06d7awkmx8fg4m8j09lscs1kvk9nx1nbd0xmb6divsjhb3mx1p0j"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.10.2"; sha256="18fwrd3df0gbji1g48dd1zblmf7hz33h1jwfx0nana0j8y8x3xr1"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.6.3"; sha256="1kfz5kwbjpz3pg0ccrkx0alq14bcp4z6az4k8h3766n9zcb69774"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.18.0"; sha256="01614r9507vwz7irdccxb3swlx5jlxrmdcnxjgd7yxzfdwsc012x"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; - neaGUI = derive2 { name="neaGUI"; version="1.9.0"; sha256="12sca0i2h7k6lcr525cnc476bf1g6gqzvi6zm0zpdbciyl9cxbny"; depends=[hwriter]; }; - nem = derive2 { name="nem"; version="2.46.0"; sha256="0aa6lgivy69daaixx5zzymlfypn22gn1x0126ygrbv9g8vpzr470"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; - netbenchmark = derive2 { name="netbenchmark"; version="1.4.2"; sha256="0id1b0v6vkzdh030vq3ppfr808kq1blyb6s4jncr772izy4irnmb"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; }; - netbiov = derive2 { name="netbiov"; version="1.6.0"; sha256="12d28igggc8mw05bzxl67647akx1yrw671s67jfdc0zyg2xvfgi9"; depends=[igraph]; }; - nethet = derive2 { name="nethet"; version="1.4.2"; sha256="0ygz7zqksp5i1fk5gqpb4dlsqyi3z609379h654arzkr1s1kvdqj"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; - netresponse = derive2 { name="netresponse"; version="1.32.2"; sha256="1qx8xsxlgib73c2bgjxj01y8y47c8mi15708pdb589dm8aldkilq"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; - networkBMA = derive2 { name="networkBMA"; version="1.14.0"; sha256="1az74f0fa9z9x4d68mjxlzf1d5x1zjam494qs79r294qbf7h7jpr"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; }; - nnNorm = derive2 { name="nnNorm"; version="2.36.0"; sha256="02s0rcwq5b0bar5h8x08xgz1gdvr69dlv4l3s84d4s1rb2bmjipa"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.2.0"; sha256="06dkj8fd2l3a0x2zz84g3kfyqsw3pridn05admhag0nalzqiy6c3"; depends=[Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.0.0"; sha256="0rfzvg4lc8wppx5g5zhcgp8vh4qw9gynmmnwdgnf48fmdvkirpm9"; depends=[Biobase illuminaio quadprog]; }; - npGSEA = derive2 { name="npGSEA"; version="1.8.0"; sha256="130w9rw7njff90b070kkq395ariy9y409kxxmbq61fmdmnqvxnnk"; depends=[Biobase BiocGenerics GSEABase]; }; - nucleR = derive2 { name="nucleR"; version="2.4.0"; sha256="1s6k181g4q23x1pk9728vbsjia8dlcwn1gl2b9rvwagspidyvq1p"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.0.2"; sha256="0vyjr0lbswfwdil48pafljz79s384qr7pk4jsfqnih07c8drj5pb"; depends=[IRanges S4Vectors]; }; - nudge = derive2 { name="nudge"; version="1.38.0"; sha256="01gvisf0894hz1jgmhf9d0b98rj92k1bfhy3pn1fpqp4qq9i3dp0"; depends=[]; }; - occugene = derive2 { name="occugene"; version="1.32.0"; sha256="06ywswmbmkajwa7wwj0bbmgwk50h0af9b5m1bvm26w6yqkpxyn0v"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.0.2"; sha256="1y2nvm05pf7pmrrb1kfvkspqwrlq5fsk28kbp6bh3df7f4rahwpx"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.36.1"; sha256="1jwbj5b3n9vwgf81cr8cnxhiynmnh2yjzsd1520a67na739ddsxr"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.34.0"; sha256="1jz5s7srrdxxfppplajq7q4c1sqwbw6lwsb0xms2chw1qnshj3r5"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicade4 = derive2 { name="omicade4"; version="1.12.0"; sha256="031vnyv15aw1kmw0cdjsmb2q0g90hc1316dh8za64z0k0cmhdkb9"; depends=[ade4 made4]; }; - oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.38.0"; sha256="0x7s8f6cvl6dlrjq5g7wq9542rpjqqgal1x0jh1za667n5cw1zgv"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; - ontoCAT = derive2 { name="ontoCAT"; version="1.24.0"; sha256="188j6wl5y9zvki4gzfv58i50vf56q36snk025pkj973nll82m4vl"; depends=[rJava]; }; - openCyto = derive2 { name="openCyto"; version="1.10.3"; sha256="1i0qq7v5s09cm6icp7347dlcbf9n81fai8xxv6ahk90jngmlsncs"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - oposSOM = derive2 { name="oposSOM"; version="1.10.0"; sha256="0ybyqxy4z0djppjj7gqw71pm4ll6b5rzwrc7zfsil9n1n33ajvdj"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; - oppar = derive2 { name="oppar"; version="1.0.2"; sha256="0nzjiy18amidc7x388lpq65i2yj0lvy0xgwzzgnlyqfjcdhlasi4"; depends=[Biobase GSEABase GSVA]; }; - pRoloc = derive2 { name="pRoloc"; version="1.12.4"; sha256="1qvg41wyn9snqr0fqygcpma4q80kr7gxsfh78yz4jmykqdvgwm53"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="1.6.2"; sha256="1ka87amamlzbapb1ih0x5mlcq0lmz4prqsdf0j4il01kq5x9ml5i"; depends=[dplyr DT MSnbase pRoloc scales shiny]; }; - paircompviz = derive2 { name="paircompviz"; version="1.10.0"; sha256="0b1vfkg554pmm0nmfjlbriqvbvy4fzik8cwn7qqsvzqs1928ii0i"; depends=[Rgraphviz]; }; - pandaR = derive2 { name="pandaR"; version="1.4.2"; sha256="17gx2hfr1s79c69y8w3fmfrrvkzbr2m0917cq7wwdpxxi376b6yk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panp = derive2 { name="panp"; version="1.42.0"; sha256="17hlbi20bxm2qidk8aa224vsqp9dfjjd79yhh0711h9aylwixn6m"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.4.2"; sha256="1k04zpwwk1aknlwg5xqsl1pszwbh2873606y2ycqsi7ngz1yhwnx"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.30.0"; sha256="03hvv8jgk56h60gfm62ia4f67fhszs8dv5whx3frriwbf7w2jxaw"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.40.0"; sha256="1fa9d2sp1rxwmxkd1snqa5ay5q5znx8xbmn3jsga9giw9nh7iras"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.2.0"; sha256="15jha74blfxdr5398gdwg59p4wmymjkmwvinrspw29dqkxn0wm64"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.10.0"; sha256="0kj9jm0az186d89lr6p016zsnj3zjcbwcs094jqf322zz795c275"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.12.0"; sha256="1vx6s2ad0yaqv2mnc6257qgmghffhyh7cwsir2pcvy7jd7xdkcl8"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.6.3"; sha256="1l6d4r6c3mjsaczw4cyiglfc8dw34k56bz0vd5ddaiy01kqn5g1w"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; }; - pbcmc = derive2 { name="pbcmc"; version="1.0.0"; sha256="0xchby283wni800wlslk7rfdm7nqnasli1d81al8rsn98lachyiq"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="1.0.2"; sha256="0nr84v2mwzw0bbz5y8llgkpkg10jalc0ciwnqgaskl1skxvhc4ja"; depends=[AnnotationDbi d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges limma NMF plyr S4Vectors scales shiny shinyBS shinydashboard SummarizedExperiment topGO]; }; - pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.16.0"; sha256="08c8ppxb6md10ar252xii7qgr6pjlbbiim9ap1giib7dyvzf4qjj"; depends=[AnnotationDbi Biostrings ellipse]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.64.0"; sha256="0dkvsh758hv16h6irhr8xy4sgsxp2ki1gpan33vyqq0fzlbibhxl"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcot2 = derive2 { name="pcot2"; version="1.40.0"; sha256="011p0935bkvlm12f0lbcflcprlzn34m25gj64169wp15lpygpcky"; depends=[amap Biobase]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.36.0"; sha256="0f57fsp1aaz4sliqzamjma7shmiqfn82ggdcnzaysizn4r86gd4b"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pdmclass = derive2 { name="pdmclass"; version="1.44.0"; sha256="0mcd1s33j0l0nqma31dwh7wyx3vfbvw68rnlxksp5a6d6fx0sxlb"; depends=[Biobase fibroEset mda]; }; - pepStat = derive2 { name="pepStat"; version="1.6.2"; sha256="1a95f5sha96ww4y92qjycimclikd19x4dc5az9nha6c7v5l67nqw"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.6.0"; sha256="1amgga42b7rds5k9c2m3is1s6lgh80sc8df7y9yfw1m09gwjg8vd"; depends=[XML]; }; - phenoDist = derive2 { name="phenoDist"; version="1.20.0"; sha256="1car8mpffbbabnh7fbsrk445y0ld45lz7953sbsbrfwd9chj4dk9"; depends=[e1071 imageHTS]; }; - phenoTest = derive2 { name="phenoTest"; version="1.20.0"; sha256="0bcg6qd51i9npskjsiflz5fl6135wchlk0pqpbnv0g33fzqvgrgi"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; - phyloseq = derive2 { name="phyloseq"; version="1.16.2"; sha256="12h69xckgsnl12mlmn7nard4pac42w5r8m8gj4vaml9w2hwlxcgq"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="1.12.1"; sha256="08zl41mv4wldpbnjhgqynp56csksz9x2ggy3v6axbsf4av08xl0p"; depends=[Biobase BiocGenerics gplots igraph marray relations]; }; - pickgene = derive2 { name="pickgene"; version="1.44.0"; sha256="0ilz8dcidximbrijy8a957hf6rxp54h45c36wmd90cbmxj54lv3c"; depends=[MASS]; }; - pint = derive2 { name="pint"; version="1.22.0"; sha256="01ydp1y039vq359ir7h13wl7avar8layx10r132488qdv7g65gnd"; depends=[dmt Matrix mvtnorm]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.38.0"; sha256="0rcrq32y3qi63ad8inc71y1gxydjc110lgz4bsvdkxykwmyxabgk"; depends=[graph RBGL]; }; - plateCore = derive2 { name="plateCore"; version="1.30.0"; sha256="00ccxrad5xfklwh2040hvp20wqqqgh0351qj00y11bmpz4ylng2p"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; - plethy = derive2 { name="plethy"; version="1.10.0"; sha256="0mvvhzacz1m4k9ig898r6kn7c1f7f96lky358km28gpk463cm3bp"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.44.0"; sha256="07ygi6gvll2bnjwn8y4nmmgcz1daah0zzgidnwblzbyj4s2d4dam"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.42.0"; sha256="0fqdvp75hz8c3k3779kdbl4xdjfqqvbd11vp0ad9jxan7j5giyca"; depends=[affy Biobase]; }; - plrs = derive2 { name="plrs"; version="1.12.0"; sha256="0pwpbpp05r95qcsk00icspna35lbw67d3h5apvgl4mibdw4jyvw4"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; - plw = derive2 { name="plw"; version="1.32.0"; sha256="114lpq9ksf8sbbcwvaczkmqgqqjfwpay1c82v192bmrhpjr3g6y4"; depends=[affy MASS]; }; - pmm = derive2 { name="pmm"; version="1.4.0"; sha256="1kh9h6033lq4mix4x4nw67dj6kw4y4k333i72swfki0vl6b43lip"; depends=[lme4]; }; - podkat = derive2 { name="podkat"; version="1.4.2"; sha256="0bfa2f04yr71vm1w9bqqij8gb68d5n5v1ydcnai016y7gkxxrb25"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; - polyester = derive2 { name="polyester"; version="1.8.3"; sha256="13visqfz6kpjqyqq8i6zwg7mr2f2p5rlk6pssysa8yc0j7bk1hrn"; depends=[BiocGenerics Biostrings IRanges limma logspline S4Vectors]; }; - ppiStats = derive2 { name="ppiStats"; version="1.38.0"; sha256="1z24495iy33qk7ymq08zrpl4kfv0s61slibsycn1diwhgshzglx3"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; - pqsfinder = derive2 { name="pqsfinder"; version="1.0.2"; sha256="0zqxr39lpzhlv22fdhlbihnr7hwwql94amhdvddbp25frdizmann"; depends=[BH Biostrings flowCore GenomicRanges IRanges Rcpp S4Vectors]; }; - prada = derive2 { name="prada"; version="1.48.0"; sha256="0209h2v72kqp6993kvfbddpc1s2qh880ag6j60lqfaz3zb09cd32"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; - prebs = derive2 { name="prebs"; version="1.12.0"; sha256="0rbas8hkzlsn1ch3pgwz8sh5siwfgdfr0hpr592vjp9mmxz4jl2j"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.18.0"; sha256="0b39arsfjxz43ybm479aisl5pc2n5z4vpva5whzr8z7qh382bfan"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.34.0"; sha256="0bcfi26ahs4ybagvz29vlp1wldhhbwwh73xz6v6xb07nakyzb6cf"; depends=[]; }; - proBAMr = derive2 { name="proBAMr"; version="1.6.0"; sha256="0r5sw67h8dwqbaizvaz7prch4jxzj6gfvcym1iv30nim7iadnd0m"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - procoil = derive2 { name="procoil"; version="2.0.2"; sha256="0j3n3nxldwzv3pjn2djnk8ql97x6xppn0lhcz6nq4glwcdrly47b"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.0.2"; sha256="0fl71nlvzl7gi96py4q63qkrd33xrpqcvld2jly7sv0cj2ng36nc"; depends=[BiocGenerics Rcpp]; }; - prot2D = derive2 { name="prot2D"; version="1.10.0"; sha256="1iy2lklhd4hmmf66z2yzs5bm8zmbcmdk52b0n6f4m1hlfwb0cv8n"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.12.1"; sha256="07ymi2m0vrnf4dzd0m6hard90y80k1v1r4i3ci8pa5mgfziws70s"; depends=[]; }; - proteoQC = derive2 { name="proteoQC"; version="1.8.2"; sha256="0z8swyyvwcw8phwnnsvjrvr21fh2m453k57b69sqb87hisczg2ra"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.4.0"; sha256="1mw1d95fbq2b88by9hmil3vycrqbmpmg2kasx4grypiz1ximyngb"; depends=[BgeeDB biomaRt ggplot2 igraph RCurl reshape2 stringr topGO]; }; - puma = derive2 { name="puma"; version="3.14.0"; sha256="0pd87cd4qn81839vvlxcvivwnfl40rbgjqz1mrmv4rbwgqz1ail5"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.20.0"; sha256="0n62i5byxrw879q0gxd9sbg2by4cy76f8ngmbxnwpz4bnc8j6vpj"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.12.0"; sha256="0jcswb05gwrwc2zv3idzr0qcp7p1bn32xx8rhmq557aiirql1dib"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.4.0"; sha256="121qvb2mlnq7as5bjb2xzq7y8gz4x47wg2z3s7s40zvglgpdjf03"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.10.2"; sha256="0mr0iabnj51wdhv9q5wifhisfl002dhddvscqpp78kycv12dvmga"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.30.0"; sha256="127lqq0p80h920c5lf6k2ffng9fl3p78ivhnkk9y9drv2p2imr5f"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.6.1"; sha256="0y2dlaww0wyrmj73h50478fjzlg8cib6rsimzhrhh48gvgaw5whl"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.26.0"; sha256="0r0gds35czs1xq5gv94n3c5i5gr2bjswij7l048npb8cqsmpvdq5"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; - quantro = derive2 { name="quantro"; version="1.6.2"; sha256="1rv0hihccq35cjf70vpk12y60w5kl9iwhhxx0fmjbax230v4vjmg"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.38.0"; sha256="1c69rrl8cijixlcr9kzcs3wfvgizvvrsyglqr8s10s23drrwywzb"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.4.0"; sha256="125mp6w9g335sjkf2894iycp98s5jcz3jljy0l6s46pbpy0hc77v"; depends=[Biobase limma lsmeans nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.4.2"; sha256="08zcqxs6mrqxin01m998s9lglb9ylcb4p7sqd8am57z4qcqwwcra"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.18.0"; sha256="05rli70p45q10b7gk9k4fanw35ayljj6b6079phdsm1v7vnbdkw5"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.10.0"; sha256="1yzaj7fra1m4f89j5n1iqv9iiq9w9j5crscdhd2plm331nparhiv"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.2.2"; sha256="0ysyhgnzb50222mjlyzawdw0xw10xw8isd5knj81hwn9x80ag6jp"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rGADEM = derive2 { name="rGADEM"; version="2.20.0"; sha256="0m1nmab4xmw4v1b6nvb3x7f7kiq24rdw4xzh591qs90rl4r0y339"; depends=[Biostrings BSgenome IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.4.2"; sha256="08daai2dwsahsnc1yzrnbs8bs2yadz2vd7fkpaigp4k6i9b0mvrm"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rHVDM = derive2 { name="rHVDM"; version="1.38.0"; sha256="0806iyx00mpi4jv9ff6x3ncfzvrk4smp60l91w5xldwysxmwn10q"; depends=[affy Biobase minpack_lm R2HTML]; }; - rMAT = derive2 { name="rMAT"; version="3.22.0"; sha256="00gg376hqxpg02vwv6qklgaivxj04bcb6d8vd6cvdnn43j2ffpdr"; depends=[affxparser Biobase BiocGenerics IRanges]; }; - rRDP = derive2 { name="rRDP"; version="1.6.0"; sha256="0rv2cj91w6xp7q066imgkw3r3yiwfvrl3qhm89nmnqbda8sgnw2i"; depends=[Biostrings]; }; - rSFFreader = derive2 { name="rSFFreader"; version="0.20.0"; sha256="067mykdwa1xzr0jhp95nmdvj4z0kp983vsimpcshqzpifv7xj32s"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; - rTANDEM = derive2 { name="rTANDEM"; version="1.12.0"; sha256="01ghsf4wr9pvssd6qs1jkxav53bw1mjyirik7992rdam7j9lidzr"; depends=[data_table Rcpp XML]; }; - rTRM = derive2 { name="rTRM"; version="1.10.2"; sha256="1lr3f2ysw8rwqb1l5x29vqsyp4934jl9jb3yjyqqbacgrfxf7syb"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.10.0"; sha256="0j622hasfzqszsh09q9w4prv8dqbdy7hnyrrdvhbx2fkm1r6h9zp"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rain = derive2 { name="rain"; version="1.6.0"; sha256="07xcqq6wb81220l8c6hb8i2d9s8vysr577bb53khxsrqnv4am57w"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.46.0"; sha256="01xc7ys5505a8krb785w4l36yf7n050m4cdnk00vhkd60j0g6dy9"; depends=[]; }; - randPack = derive2 { name="randPack"; version="1.18.0"; sha256="08mnwj7lb7z6pffnpvilii6bphzb5vkc4f1fzyvgbbk3zvdcrajf"; depends=[Biobase]; }; - rbsurv = derive2 { name="rbsurv"; version="2.30.0"; sha256="1q89kz0wqixl6m9vp8x54255j2qjpkb60jd0y8a24kpphln54afq"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="1.4.2"; sha256="0256asrz6ivjvhkwskfk71q6n3xdgnjqbggp9lz8dvsk2wl8snrn"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; }; - reb = derive2 { name="reb"; version="1.50.0"; sha256="0bi8jv4r5h7hbkn6m8wc2kv2qyadc0gvx16jkwsk5p450lh5c5ba"; depends=[Biobase idiogram]; }; - recoup = derive2 { name="recoup"; version="1.0.2"; sha256="09cgbdqv9q60dhd972mcgyrfcczv52idni69yj2c4jnbmx1224ks"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; - regionReport = derive2 { name="regionReport"; version="1.6.5"; sha256="0fa9vhx2as2agbij1scpsih5f31ksqdvvrfj7mn2d3rkz8sqi9a7"; depends=[DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.4.2"; sha256="0qn5say4gy9l1lli0i98i4amjqz75f390689dxn9ncfdcaqxkprw"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer]; }; - rfPred = derive2 { name="rfPred"; version="1.10.0"; sha256="1k1s7i9va0dnnii76nnhcv4g4a4b03rmhicl7hsbmy56fnx91qf9"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rgsepd = derive2 { name="rgsepd"; version="1.4.2"; sha256="0nj8x65q0642c6gimll84r2794bw41iz1iimqfznjkndv344a8g8"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.16.0"; sha256="1a1bwnwqfx40jfhf0cv6ajxdh4k9y9z5zm446cjdx8fw6garam3j"; depends=[zlibbioc]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.6.0"; sha256="0n4apcqgcyw71sypjkia45q61i4z35rq7r653i53fhsck4prwgzx"; depends=[abind GenomicRanges]; }; - rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.30.0"; sha256="0y5m2prpvg10xpidvihvzmywi08vhj23mi3xx9i49kn5jx46jiix"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.2.2"; sha256="0hfixw4fv0s38ar1faafvvm2z9jflh7lxzcmb8m8751b0wn9mkq2"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.8.0"; sha256="1ymc4bgbi90nyz4lalrwr51n138vxr59f9lvr8j454ikdda6vpgs"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.0.3"; sha256="0irk8h8vgpxgcka1ad5grsxq6dw734flshlsyicv96kg3nb7qqrq"; depends=[Biobase httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.4.6"; sha256="1pls9c5l8lidj6cdvls3gk0mc1sy4374mbikn95fzj4vw46vcpaz"; depends=[]; }; - rpx = derive2 { name="rpx"; version="1.8.3"; sha256="1aq4hp38wiqv1p6lhjj8d759sr4sk6jy1jmnnb16ln4jls77hs7f"; depends=[RCurl XML]; }; - rqubic = derive2 { name="rqubic"; version="1.18.0"; sha256="0lv9xmip5prbkb4dha7lj7nii7wvk1wvcyad8chir76lks1ysdhn"; depends=[biclust Biobase BiocGenerics]; }; - rsbml = derive2 { name="rsbml"; version="2.30.0"; sha256="1q30yl7fny5rh1bai0z5gc5l7ci6qys0j59j417glc2pwsampcq4"; depends=[BiocGenerics graph]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.32.2"; sha256="190767zpwc7maqjpy0x5bpkm0jp1vfawy9991fifw0mc634cjkga"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; - sRAP = derive2 { name="sRAP"; version="1.12.0"; sha256="1wxg597ks3xa1srl8mwh90y09jc73758bfcw1pfwq2wpym5x6qsf"; depends=[gplots pls qvalue ROCR WriteXLS]; }; - sSeq = derive2 { name="sSeq"; version="1.10.0"; sha256="1w33zc6kaxm5ripji4n2gc0sk29fqq0nzv8nmddx3qwvhv1x91k2"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.12.0"; sha256="0f2i6zqc5x742r6501qsn0c8g0ld4lkvmvj6a2sjjacpj8g663am"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.42.0"; sha256="181sw6wdkv7c3sb9m9hfgd7ki3rv63p0k5mfhal7j48wphd1l8f9"; depends=[SparseM]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.8.2"; sha256="106p78f804b2ibkrkg6j2dxp6v9qsr03g4shkkcawb698qvgbr38"; depends=[Biostrings shiny]; }; - sapFinder = derive2 { name="sapFinder"; version="1.10.0"; sha256="0a5kq447l0f3mdml4ykcdvp4whqzc4pn3zsvzjhrxc06d4a91y5k"; depends=[pheatmap Rcpp rTANDEM]; }; - saps = derive2 { name="saps"; version="2.4.2"; sha256="191kmdf5czf96d7likysfxm13z240qd4z22n3dwdw94akpsfvrrp"; depends=[piano reshape2 survcomp survival]; }; - savR = derive2 { name="savR"; version="1.10.0"; sha256="14d3r64w00j99cd9wdlcxcyhlp278skyadn0dcmmjg2lfcwv9dj5"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - sbgr = derive2 { name="sbgr"; version="1.1.1"; sha256="1z6xz5apv8cg6b0ciarvj0zn8s5xa93sfirzmldwsx9wmnm95kqq"; depends=[httr jsonlite objectProperties stringr]; }; - scater = derive2 { name="scater"; version="1.0.4"; sha256="1zmaml2mbj5fkxfnah5klm2kyx09fghqddmbb4084bz7w737s2by"; depends=[Biobase BiocGenerics biomaRt data_table dplyr edgeR ggplot2 limma matrixStats plyr reshape2 rhdf5 rjson shiny shinydashboard tximport viridis]; }; - scde = derive2 { name="scde"; version="2.0.1"; sha256="1d1wfcaxj7j4zhvs35038z7zdsn3idqhv1hb1s0bhhrvxyh95j1v"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scran = derive2 { name="scran"; version="1.0.4"; sha256="0z748nmy5z346anbv33p7knh489d556aghrwdpp8jjv8lqqy6fha"; depends=[Biobase BiocGenerics BiocParallel dynamicTreeCut edgeR limma Matrix scater zoo]; }; - scsR = derive2 { name="scsR"; version="1.8.0"; sha256="033f6kdmw70mf2hjadsanb1wx5wgnj69ipixb4n16262bvz54ajy"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.6.0"; sha256="07xh6gpi1pprinza2vswjpihff7hjqzsj3j6yrqmrhyja63n0ni8"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.4.0"; sha256="19r1gpmpzrxiyjx7gila1ldn714k15whhjg25kv79s2ji5fsqcrb"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCNA = derive2 { name="seqCNA"; version="1.18.0"; sha256="16hbmzlc69jpirl8yix3lnx3hbw7jdj7njwxar47w3r3vbqhc7xg"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.38.0"; sha256="01jddx62nhi3r7czbh9hxy0wwpazbc9ax1fgagfxl6p4kx9xz9rb"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.4.0"; sha256="1dj9hfnbdj11yjxwd8jmxrdkj7n6gmaaj6244g2psgarhjcp4wfb"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.6.0"; sha256="1xzc2457rjnc901dq0jaqpya04cxmk9c1y41495hmx5yimls2hnj"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.20.0"; sha256="0yhzc8iyiqja93d919sh8jxnxq4wkydfbiygk8g3h45amzzx3iwb"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; - seqplots = derive2 { name="seqplots"; version="1.10.2"; sha256="0dd6pmmidbkrr1gxflly1skj8qk3h882jas0a49ibmyyhgydffqx"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.2.8"; sha256="1b8l26anjq1bv1x71y1py3807kv4f9wzc4n2fxdgrvzdkimmnymp"; depends=[curl docopt dplyr httr jsonlite liftr objectProperties rstudioapi S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.6.2"; sha256="0q7lkmyh2hrxfmv5vl42d35hrgisc6x0iwgw9ahdiskmp13dwjqs"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.10.0"; sha256="0xg5mhkgdpx12x9ys9w9bfqrg2595av88g975p50k2wikv9map14"; depends=[mixtools rTANDEM shiny xtable]; }; - sigPathway = derive2 { name="sigPathway"; version="1.40.0"; sha256="0q1xwm87ia1zp5ry5pk5qb2rcxfi2s4ifiyn4yi24a7n2byanqy4"; depends=[]; }; - sigaR = derive2 { name="sigaR"; version="1.15.0"; sha256="0z1nkxafiv71virpgsb32ji6z88yb9r6w7jvp2ck5yqxvv0brsg2"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; }; - siggenes = derive2 { name="siggenes"; version="1.46.0"; sha256="05adv1phvj8x9f1rnd2cz1xxyfbyk6zl0004vgfnsipklqy22z2c"; depends=[Biobase multtest]; }; - sigsquared = derive2 { name="sigsquared"; version="1.4.0"; sha256="0683my2rflshlgx9nhamqvp3fqnxp0fb8jj14wqh29drrx6v93jk"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.4.2"; sha256="1rdpf77mbqrs4ja0f9298qp8jfcwxl2hcbxk0ss5aia1cds8g475"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; }; - simpleaffy = derive2 { name="simpleaffy"; version="2.48.0"; sha256="1v16zgqz2kg943lcwdc6v2hwq4ngd0qw9611pv145ysd4bx6p92l"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; - simulatorZ = derive2 { name="simulatorZ"; version="1.6.0"; sha256="1bxpk4kigaymfgnf723s9pyfgpckhqfryjbz6b572jadf3swdjhc"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; - sincell = derive2 { name="sincell"; version="1.4.2"; sha256="0hdx2wzs6z5birxvin0xp0xvh0zrpmbwzxgralv2aghkv21ji5l6"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - sizepower = derive2 { name="sizepower"; version="1.42.0"; sha256="0c17hs0yqqi92c1f27s7nh0vr1y6ak06mrv8m537w98cr659vlas"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.4.2"; sha256="0k11mvxkrgqx5gxzi2li7pdw44zdvdyb41yh0wjqxn413qj67jp2"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; - snapCGH = derive2 { name="snapCGH"; version="1.42.0"; sha256="10fap32vzbjwpgvbq4i1jh8sca0bdcza9xzw7mmw8cnr20ddv388"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snm = derive2 { name="snm"; version="1.20.0"; sha256="15nh0p79jpwdzd3l2yzc0kfg9gbl5y5cjzbvcvklpprhh11s787r"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.22.0"; sha256="1hyznmdgjl96jf8aisa5nyjp4in74vn5nhipwxnc8g65j8qlmgdv"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.4.4"; sha256="0wdg7p5rmfdhqy7294h99pf84l1hfpqmjkvmxkx87p1a8590a9nl"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - spade = derive2 { name="spade"; version="1.20.0"; sha256="17x550ixg8f8gcjg3sc80v7bimzbvdi687m3znavkdpw03v7jcg9"; depends=[Biobase flowCore igraph Rclusterpp]; }; - specL = derive2 { name="specL"; version="1.6.2"; sha256="1kg6zhrd7fp07jl0njd54z4m4886drkks0b8k4w17vdxw2cpajc5"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.32.0"; sha256="0qk447fyrfj0ha0faf62i2h5hv8wnyfng42jkqcn8k391ga33w03"; depends=[]; }; - spkTools = derive2 { name="spkTools"; version="1.28.0"; sha256="1b76k0jp4dk2w53q8d536jfjznfdy1f2a8s44klm1rn3qw0nfp4c"; depends=[Biobase gtools RColorBrewer]; }; - spliceR = derive2 { name="spliceR"; version="1.14.0"; sha256="09c6h8xlfpfsnxvndf9zab9kiv4kfx4j3jqqm6f5ry25y1ixv49c"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; - spliceSites = derive2 { name="spliceSites"; version="1.20.0"; sha256="12j2mx7al7yxzhb3g6xy7v85vjipmfw0sa5nb3c3kh711r2485mj"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; - splicegear = derive2 { name="splicegear"; version="1.44.0"; sha256="02kzm95hnn1b9384qpndqxfrc9916i50rynpw52131rjzhy2qkqy"; depends=[annotate Biobase XML]; }; - splineTCDiffExpr = derive2 { name="splineTCDiffExpr"; version="0.99.4"; sha256="0b14hyrh2fa02yh2cvr2xjmrq81y46r6lrc6pzybi6mv3gpkdr6j"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.0.1"; sha256="1ham5hzfcv2ws9j8j07fzhvzij7fdnpnddd24sqb2w4l5p8sjj1z"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.38.0"; sha256="0pq9xgylc3qq3pzfizg25c3m6l64zvkc94xa5i8sm0v49161rjh9"; depends=[RColorBrewer]; }; - spotSegmentation = derive2 { name="spotSegmentation"; version="1.46.0"; sha256="1hbvxfcwpaz5gbkvnsnravd9zdghkl2kqwx6mhznjbzggjp5hf1i"; depends=[mclust]; }; - sscore = derive2 { name="sscore"; version="1.44.0"; sha256="14wl2chv9xrfn02s8dif0pa6nq41dbv5n9q2sjp1rgbknhs92l4f"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="1.0.2"; sha256="0rflgvb8anzrv5y9rzm8aiaappafyjmmak39mvz6b3mm1a32zwkq"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.46.0"; sha256="161k421x32wp2qs705p7i7hqcf53sdmw5vllnwiqfidw62xagiya"; depends=[gdata xtable]; }; - ssviz = derive2 { name="ssviz"; version="1.6.2"; sha256="11w4y3fv5m9qxp998k9xm9w1vg0v34npqm9s05biv0qqxwgs9v36"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.14.0"; sha256="1fn9m8q834v8540q8m2n9vfxdzqz2mbxb5k7mnjljf9ja07da9l8"; depends=[cellHTS2]; }; - stepNorm = derive2 { name="stepNorm"; version="1.44.0"; sha256="1l21pw9d2scp9jczf0d4mscvd5qjqkrn4maxx9k2l2kqz47bh1dc"; depends=[marray MASS]; }; - stepwiseCM = derive2 { name="stepwiseCM"; version="1.18.0"; sha256="1375hwx4zln7mnscfd6w7k4x6jc34m6mqs8fxmnihvkq4imhxd58"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; }; - subSeq = derive2 { name="subSeq"; version="1.2.2"; sha256="04qg83x7cmjsnzg925jx8aw83gpzynkqdgxy4n44rxqspw922f11"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.10.0"; sha256="1kzkkidlr034m0sgyb32zia0p47gi52l6ki7s88559h7gx5d7bg1"; depends=[ape hexbin MASS]; }; - survcomp = derive2 { name="survcomp"; version="1.22.0"; sha256="0l6plsjfbpx0lxkyscfnbykinjcijp1bwbrqn4i76y003g91b4yz"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - sva = derive2 { name="sva"; version="3.20.0"; sha256="0jqa4rdd0cd546sc1dbsq1lrm3kqcfym77xr7rsmrpc12yp85xdv"; depends=[genefilter mgcv]; }; - switchBox = derive2 { name="switchBox"; version="1.6.0"; sha256="0ys69bh12b9idni67v1phfm1nik9z8izpix3az4xhy253gsb3idz"; depends=[]; }; - synapter = derive2 { name="synapter"; version="1.14.2"; sha256="1wql8q8fbkl16g1xczrbcd68g41c35rfyqyrb6cj250axjl5x2q4"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; - synlet = derive2 { name="synlet"; version="1.2.2"; sha256="1rgsfxjkfv546c285cwp740gcglfjg8sbf0hw9v1dmqa16fy3pss"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="1.6.4"; sha256="0s2g46a5d5bvx45i3cgmib48wf8hrniyladhm0f7kgcbfx57248m"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.10.0"; sha256="0dylpkmz91gvl6zsi501yqg5kf0sagb4f6bcdb9gl68r3vbmkxnm"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; - ternarynet = derive2 { name="ternarynet"; version="1.16.0"; sha256="0xzvvhgmbka28ka6q2inkfgc3lgi6007apndw6gb33548by7l30p"; depends=[igraph]; }; - tigre = derive2 { name="tigre"; version="1.26.0"; sha256="0k9sjq3qxji7zsgjmy8zp0744zw17w86i2rf7yqapw2khgk80pdh"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.50.0"; sha256="03m6xcrs80a9kc63wawrnynxbydr54qfc2azfjj28qjb38cij792"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timecourse = derive2 { name="timecourse"; version="1.44.0"; sha256="09m2laz25wmlch2r657q97ii1gryhs04yva8ym9a2z7dpypr4hpp"; depends=[Biobase limma marray MASS]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.50.0"; sha256="1dazx95p1751kzdf0k8a1kbbbq6d258ga53j71gnbzskg2pmr3s9"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.0.2"; sha256="0yyxwhhj6nqfxclzp05dsm8ydpvcxld73rd2qnq2xplffx9db45v"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - topGO = derive2 { name="topGO"; version="2.24.0"; sha256="1p4vsl32qhjw15yv9ym01ni63gjg73jaghlf17wc4zfn3iaz2zar"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - trackViewer = derive2 { name="trackViewer"; version="1.8.4"; sha256="0qzqzqqpajdv8srr59i7qxwn90vf0xdshnlchmn2v6k4949n3jcj"; depends=[AnnotationDbi GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz IRanges pbapply Rsamtools rtracklayer scales]; }; - tracktables = derive2 { name="tracktables"; version="1.6.2"; sha256="1mx924d22w794gx3n5xdl711ajyxpmfwfx1x496cbcy9fqbc38sm"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - transcriptR = derive2 { name="transcriptR"; version="1.0.2"; sha256="08jbwajdbjx8jj7snfihyf4nzh72af4cj4grgvv5j0lqymvkziv6"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - traseR = derive2 { name="traseR"; version="1.2.0"; sha256="1mpvb38zg13b28s9fp3lm1m4gv002kaq7fqgxjnhk743bs4zqwbp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - triform = derive2 { name="triform"; version="1.14.0"; sha256="1rfrqa5k2sfsyxpjjhs9scjgz1qzqgks13xxppz64sdlpjgrr8zw"; depends=[BiocGenerics IRanges yaml]; }; - trigger = derive2 { name="trigger"; version="1.18.0"; sha256="1vzp9xlq2i6g659i4v1bbmh396lqwac3iwzx10kxjadzsp3kmd30"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.10.0"; sha256="07a20anzcg98nvbwkb1y3wna7kp4wwh2r994gnajl9lpp4ya8v4m"; depends=[]; }; - triplex = derive2 { name="triplex"; version="1.12.0"; sha256="0562c7i9y3ajb6krqxfg2l7hmv8x9qrd7jqm1pkv7mb507yw3ijr"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tspair = derive2 { name="tspair"; version="1.30.0"; sha256="1di6h6hm5bjl7j3hnnblfi042i0pj6rlzigprbz41spppassvg28"; depends=[Biobase]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.18.0"; sha256="1i15pjvyz1idzam54d93f5i0693gjwqnnr97a6i2k7mnng859ik1"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.48.0"; sha256="1mz8967fkjkyv75j6ahxrygvlwi1cmjiag4vd9gi6jrqqbpj0hdg"; depends=[Biobase]; }; - tximport = derive2 { name="tximport"; version="1.0.3"; sha256="14j85aw1hhszaajnk7pj02bsj0id2y70ja94njxcr3j3rax1ngg0"; depends=[]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.8.0"; sha256="1fa5nmdfg52kppvxri08x97zb03c5fq2mz78jpcjaryhcz1jcpr8"; depends=[BiocGenerics HTqPCR]; }; - variancePartition = derive2 { name="variancePartition"; version="1.2.11"; sha256="01525cbxgh9q4dnwn8ynrc1ixg9b98k7yn59svj6pdxmi2b9a58q"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 MASS pbkrtest reshape2]; }; - vbmp = derive2 { name="vbmp"; version="1.40.0"; sha256="0b6dw8z2lvzlfafc0p38x0skwgayafznvcwc813rkb2jcfac3q5h"; depends=[]; }; - viper = derive2 { name="viper"; version="1.7.4"; sha256="12hyvy6dz67r3aybg4cbkzayb3j4vm0vi5ib2y9lq4195fp6ffxr"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vsn = derive2 { name="vsn"; version="3.40.0"; sha256="0cqx7kar7ihhbqdk37zhj6w5g1nw04l10vwnw2gxwm2y4229skh4"; depends=[affy Biobase ggplot2 hexbin lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.12.0"; sha256="0yq4h1pv7vkhwmk1vq0nahzyw6wnbvhlmw0rgggzbdc0irp99yj7"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - wateRmelon = derive2 { name="wateRmelon"; version="1.17.0"; sha256="1xhqv5hrxivw924snl1nb0biir39mzwc3m8d9qczhn52ds04wsn1"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.6.2"; sha256="0dbjkpajs4src5kgymin7b4h4yciksa112s52fm116mfll0g1rxl"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; - waveTiling = derive2 { name="waveTiling"; version="1.14.0"; sha256="1yfvzb0k5b495460b1k2229h3qcx7gva48lc419r2y9dlnajii3d"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; - weaver = derive2 { name="weaver"; version="1.38.0"; sha256="1g6796sw321la3rh4s28xzfv5wr91f4xva965sccl5l4vxqs5ccr"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.44.0"; sha256="0wd6xdnp3qcinj7sgl1hizl674v65n9xjbw0haf1xyrlijakpn7h"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; - widgetTools = derive2 { name="widgetTools"; version="1.50.0"; sha256="191agm9c0g43wbncya8dnrgssx5s84i5w147na84g37r6b9cn67y"; depends=[]; }; - xcms = derive2 { name="xcms"; version="1.48.0"; sha256="0xynzbvsknyyh5zdnh8mgs7rjf53m3fkhwqqi116lscqmf89scda"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.30.0"; sha256="17nccdcnwvi4vj2ykc0adq0018prfxpkzk78s315gx2l0ywkzmv4"; depends=[]; }; - xps = derive2 { name="xps"; version="1.32.0"; sha256="0clajv5qpv6z9hhq4ns5gjys1zb5k1r6bngpjfm0g2k8alaj82rk"; depends=[]; }; - yaqcaffy = derive2 { name="yaqcaffy"; version="1.32.0"; sha256="16sif5lsfczrl811g7237yg5pw8am2q7m9yk7zfkh3l07lr75zni"; depends=[simpleaffy]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.18.0"; sha256="0m8l7zpx1l3qsk73k3ibkxxzzff938x3qhnwki1ymf3cnsg8cb36"; depends=[]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.4.0"; sha256="1skhxyvyfgld2abiw8cl8wkqrq80jm2pm4p6l297v25cbsjmk3lz"; depends=[ABAData gplots Rcpp]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.20.4"; sha256="032j430z787j1jrm0c40nn6m33vbjyngiz9ln1jx2z222ybcxrd6"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.42.0"; sha256="17vmy7419jdbrkzjll2ck2qvw3wdbba2cdazvji5zrflg9938hmj"; depends=[Biobase multtest]; }; + ACME = derive2 { name="ACME"; version="2.30.0"; sha256="1hhqdnv4dkck47yvp17y3b741d63dxnlhbmkylz5bdab2swffz4m"; depends=[Biobase BiocGenerics]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.14.0"; sha256="0lvj93gy2x7c6fh2lv8mr17aglk97cmp8s7nwrhysxizbhpzf6mn"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.22.0"; sha256="06zcc8zc5dz310wi1rp75f6015lf97dwaqgqrbxim2akrfrnhyzb"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.6.0"; sha256="1z62cw3f803vl4mymaxaa0vkvrlsmc79idqcq92qw9iznpdl2jam"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.6.0"; sha256="1iiympsbj234nh7pdpgw6wiadj356i925j6in5d14jcqkq12jwpv"; depends=[BiocParallel GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.0.0"; sha256="0fh7086cdhpp05nwwj6bxwrzi9m6wkzirlb905c3g46afd9wxjrp"; depends=[]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.14.0"; sha256="1ikfh4sqzclhva92wz9xhlf835sw9isa6jflnsjwqilg5kivy9bp"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.0.0"; sha256="0jcjd5gh8j9iwq1b97jw614cz69z2s2fxv1prqkx3alibsf8jr2x"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.18.0"; sha256="09kppm2lhhhd0kfy274xx6p387fxh7rfa3g4ajncnq6bspz8hvia"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.8.0"; sha256="0w8lwaaj51fh3ibrdcba74x1nfar4m30dz2rii63lk0ah2xb9amy"; depends=[MASS Matrix]; }; + ASSET = derive2 { name="ASSET"; version="1.12.0"; sha256="0vpyi5vpyys597ma8ig18hm1x2f86fwzd35wq5h68glnm3jm3vds"; depends=[MASS msm mvtnorm rmeta tmvnsim]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.10.0"; sha256="0ks2k8r650j95wd0s7bvxl4d8bgx6dzzb4bpqc68p6bmnx80vkqv"; depends=[gplots msm Rlab]; }; + ASpli = derive2 { name="ASpli"; version="1.0.0"; sha256="0cyq81f2ll9ygvq71p3mlmnvs8pm1582pldz1amlwwwdng7c4v36"; depends=[AnnotationDbi BiocGenerics DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges S4Vectors]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.34.0"; sha256="1275r14pgj33zq275yp9xqvmxl2nqi2cgylbyjy8i9xvbg4f4sfg"; depends=[Biostrings RCurl XML]; }; + AffyExpress = derive2 { name="AffyExpress"; version="1.40.0"; sha256="0ahj4fm2wdcza4w9m12vvfmzgl2f71xkhwf8mrwm69fp9n1s27lx"; depends=[affy limma]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.20.0"; sha256="03rsp23nzvzyswxziwf07x0q5w2f7lhsjpz1biz2pzv64g6xnkwi"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.24.0"; sha256="0jd78lh02kwxqll5qwnfkwrgfrm5scdc6p703r0vd8gl3cz8wdws"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.12.0"; sha256="0a4bmv7fpd134vdixlwxszlz7lx8xab8122m6p92q6gpla5fb6hk"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.8.1"; sha256="16x28f7lc5rn73m8l5z3jigkld5yf12pf5hv0mrq9l6fln1i002x"; depends=[Biobase graph log4r rjson]; }; + Anaquin = derive2 { name="Anaquin"; version="1.0.0"; sha256="1fcbxzl4jwcbkgn4v5x4g901fpvlij5hv5n0jfvhxi8wdwqi0xq6"; depends=[ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.2.1"; sha256="1yicsbfj72qbzz03pn1wndmkmsa9i97a78cblhl3vhqgkfff8dx5"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.36.2"; sha256="0574lmyisn3nv9aicz9x3iivx990da4q2j4i0f1jz0mpj9v3vc2w"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.16.1"; sha256="0l1g9hy88sh5g567svyfd8pnjvkyklkn6a3gjn8zalvh62qqjjq1"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.24.0"; sha256="1x8rwldmwiri0jk1ypc47bgwdq8nzbbxji9pphgs69g09dijsd0f"; depends=[AnnotationDbi DBI]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="2.6.5"; sha256="0ff2by5bw5ywxwasiq7z5zc5w7wwwjsvwkj26mjv35zvy7d33kd2"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.4.1"; sha256="16v6pqdicjsc9vr4mpjrczffw2dzfkzqp302n0c7m8q2hyw869yl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings curl DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser Rsamtools RSQLite rtracklayer S4Vectors XML xml2]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.34.0"; sha256="00142sbwbxgwqqhizhjkv5c6jc3575r4s3wwmq4jl6xhlb6nmab6"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.24.0"; sha256="13y4z76sf05ix9ca0pw058q49y5q1z9yisngwjwkmigcz2bwp6z2"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + ArrayTV = derive2 { name="ArrayTV"; version="1.12.0"; sha256="10dxj9p02lbh80s17yg3blkx1jha8a962949g733k4p6l25av4jx"; depends=[DNAcopy foreach oligoClasses S4Vectors]; }; + ArrayTools = derive2 { name="ArrayTools"; version="1.34.0"; sha256="02sbknh03k84ylbmmbby8f96dbnwyi2i7hl1p8akf7idg3skinma"; depends=[affy Biobase limma xtable]; }; + AtlasRDF = derive2 { name="AtlasRDF"; version="1.10.0"; sha256="1ar3ggivwc5nx22kyqapv1sb0ra91nq78c989prx5bli3cxfrkxg"; depends=[hash SPARQL]; }; + BAC = derive2 { name="BAC"; version="1.34.0"; sha256="0j7l177nc5c1imib2y1lnnza2b5824rjb10plbpa5knn15kql1l9"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.12.0"; sha256="0q62cyjqqb5v5cnbn9nm3mlfifz140wk6r27d75dshji4arwc60y"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.14.0"; sha256="0ajjbz3g09qwdl57ab2yhrdvmbw1d0hfcncglpsbf98pb6kda1br"; depends=[Biobase breastCancerVDX]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.4.0"; sha256="1q6msd8l3v10swx4cbc71ggihnw9p3pj87v2n5mgdzpc1nngygib"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.36.0"; sha256="0jx6mp6ca4kwpyv341n485hlyzgqayynfrx6vl18dp6f0zkarkym"; depends=[Biostrings]; }; + BEAT = derive2 { name="BEAT"; version="1.12.0"; sha256="03wcm4ga5vsf7iqih7p0sw39ipjaygvhx2x153fnqfhg34a4k67z"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="1.6.0"; sha256="1z04ylm5821s7rgrv0bgx5mmy4f09d3a5n4r0mz82lnin7i8swab"; depends=[Matrix snowfall]; }; + BGmix = derive2 { name="BGmix"; version="1.34.0"; sha256="1zkylanfd9m35hswvyykjqz1rb84fhn51q18g32ilpk4yd78aqj2"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.26.0"; sha256="0xawsqh3drpw14c9a3sacd0rmk93p6gn2yfmqlf91a41sbpj0hpc"; depends=[]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.0.0"; sha256="0rn4q12bjy5k6g9wkghrxivfzw32qwc6sh4b2b6gaxqsq4rqbnmj"; depends=[assertthat data_table doParallel e1071 earth foreach GenomicRanges IRanges MASS randomForest S4Vectors]; }; + BRAIN = derive2 { name="BRAIN"; version="1.20.0"; sha256="1nj78v1z98mj1n6kyw4fgradn4yqbyd58db15xwlk8d23gs902wq"; depends=[Biostrings lattice PolynomF]; }; + BSgenome = derive2 { name="BSgenome"; version="1.42.0"; sha256="0hxwc02h5mzhkrk60d1jmlsfjf0ai9jxdc0128kj1sg4r2k1q94y"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; }; + BUS = derive2 { name="BUS"; version="1.30.0"; sha256="144x8zl983vis1k0nba5j2i6pywrczmq2cqdg3bd1w1z9n69643k"; depends=[infotheo minet]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.0.0"; sha256="0dy3096078gfy9awyagqnbv63ib8bbgh36jf9zvfhilrz9d31xl5"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.2.0"; sha256="09q1bqgz6amraslcdihjz81q7gndn158vp6wpzb1ky9fdd6akd0a"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.18.0"; sha256="03jpwdngyjs18pzkp17fdyy5vq6h0ccqw942a7nd60dsf27mw3pf"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.10.0"; sha256="0cgb4qn3gg7cgp81cblg9qkim729bjvygi7wlxsnsriqfjljsb5s"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.2.0"; sha256="0z7z6gnsczdb4x9277i0fyf5306gkn94j1j2i5aw1j990hrnb619"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.2.1"; sha256="0gdxbn74zrbpgg0y9w0n8mbibh0f320ghgyw32ya1agc8maqkfzm"; depends=[corpcor d3heatmap ggvis gplots knitr limma matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.0.0"; sha256="07zmkihvakhqxc6v6hh95d3wkg32vrvag1fbx9qxfmqnnicsrnin"; depends=[Biobase]; }; + BayesPeak = derive2 { name="BayesPeak"; version="1.26.0"; sha256="1hk31ic0r7zbvfz04h1ginkkhzbz85wdlsmym1aqbiz4x53j97wj"; depends=[IRanges]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.26.0"; sha256="0ms2wa4h81j4q6bwak217q8nkrkmj5zjm33i3gkifbzav2s1k5vf"; depends=[]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.0.0"; sha256="11az0sqnjrpfw3pnf0aqgz4kqd8gd1976s9zfyl10gyrfj7h9n49"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; }; + BiGGR = derive2 { name="BiGGR"; version="1.10.0"; sha256="1h2ilx761cy3f4vd52kz4vyq74khln5jiwhllg3w4vs4kczvs32k"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.6.0"; sha256="138q86h188nnwb4f0q1xw07n0v44cgmfzh5j9xvbkcp522lj0n92"; depends=[igraph Matrix slam tsne]; }; + BiSeq = derive2 { name="BiSeq"; version="1.14.0"; sha256="1bdgg8mb269hipp0n8bphdgrslzmc8ykcdx848vcgppgfb0dab7a"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.32.0"; sha256="0mkdb2ijr8lb1j08nzd3vwr63vjlpfs739fwk5ay586a99n4qi0z"; depends=[Biobase GSEABase multtest]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.42.0"; sha256="1zd7s997dyhl85b99nzqy5a2ljdz7gh55l02y3qadgbfazfrfbfl"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNet = derive2 { name="BioNet"; version="1.34.0"; sha256="1vjnlr7gasklb9dshz580bc8z8rkd98093rf0049vqf4z7d65m3j"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioQC = derive2 { name="BioQC"; version="1.2.0"; sha256="0cjh945vjcgn8lxi3gd13m96vrp01pz96mjn0apcp7xbf2rcfmmx"; depends=[Biobase Rcpp]; }; + BioSeqClass = derive2 { name="BioSeqClass"; version="1.32.0"; sha256="1m0arhpckd2g48mwfm56av4fkgs6mcmwygxyci0jfh9hl78mp155"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; }; + Biobase = derive2 { name="Biobase"; version="2.34.0"; sha256="0js9j9wqls8f571ifl9ylllbb9a9hwf7b7drf2grwb1fl31ldazl"; depends=[BiocGenerics]; }; + BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.36.0"; sha256="1qgf7hii9zhw8awqs7j89k35y34w45xb9k4sa8csd76h3y7av3q0"; depends=[Biobase]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.10.1"; sha256="197kpiycyl3qawm6801fxyxj81d2g57a00qxaqprapsf1d140l52"; depends=[BiocInstaller biocViews codetools graph httr optparse]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.20.0"; sha256="06szdz7dfs1iyv5zdl4fjzad18nnf1zf3wvglc6c6yd9mrqlf7vk"; depends=[]; }; + BiocInstaller = derive2 { name="BiocInstaller"; version="1.24.0"; sha256="0y1y5wmy6lzjqx3hdg15n91d417ccjj8dbvdkhmp99bs5aijwcpn"; depends=[]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.8.2"; sha256="18zpa0vl375n9pvxsgbid1k96m17nqqgv1g1sfnlmm7kj34jxg6v"; depends=[futile_logger snow]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.2.1"; sha256="0sl99xw940ixrm6v24lgaw3ljh56g59a6rdz7g160hx84z9f8n2n"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.0.0"; sha256="0asia6f2ff80g8a2w0fckkqhcydkj4ry67c7wlxsz0xzllp14gxl"; depends=[httr knitr rmarkdown stringr]; }; + Biostrings = derive2 { name="Biostrings"; version="2.42.1"; sha256="0vqgd9i6y3wj4zviqwgvwgd4qj6033fg01rmx1cw9bw5i8ans42d"; depends=[BiocGenerics IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.18.0"; sha256="0kv2kk1flm6vbs7s2d6kya1jg8hajrxdg5ndihrsybaas5fby8mb"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; }; + BrainStars = derive2 { name="BrainStars"; version="1.18.0"; sha256="0q0jx30baf2hnz4mplqj6jhl7mj5hncgb00cj1d6yijv9c9iiay7"; depends=[Biobase RCurl RJSONIO]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="1.8.0"; sha256="049a5bdjxp30jc5zgswk0bsyfvri58g4zrbkw258kwgsmk44l6f4"; depends=[RCurl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="1.6.0"; sha256="06a7sg26b0lwla9vzq9vnggvbhnnw5xh07r7yr258d5030nabpy3"; depends=[BiocGenerics httpuv jsonlite]; }; + BrowserVizDemo = derive2 { name="BrowserVizDemo"; version="1.6.0"; sha256="0v1l13i6xf8605xrmgfj0pi0r4w15jpzvz4inhpnm66rn0qv2r5q"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.4.0"; sha256="16sy8yfbjr1shbd63g9354mzxsisqp4d9nfi6hxhj5c2r35x6bga"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr rainbow RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.38.0"; sha256="04l2dqnf2akq4fhy63sywnmrcddz0r7da3gbd2zgp9fyn6m5ayv0"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.38.0"; sha256="0m7pwiyrk482g73aknmhpp09vc4yb5s3jb8bp3y9d494hdy7mijl"; depends=[BufferedMatrix]; }; + CAFE = derive2 { name="CAFE"; version="1.10.0"; sha256="0gw5c94fr1kzckai6bgyc5dkgizqir3k8zcc6mdpl5d07hwahsip"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEr = derive2 { name="CAGEr"; version="1.16.0"; sha256="1bbbj2bqc2xd5akmgi30w0h0rfn1n5sv626dz916alhjzhiqx52m"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; }; + CALIB = derive2 { name="CALIB"; version="1.40.0"; sha256="0r0dz6vg3sx4bxajh6c8gc12wgnaahnz3yah82jsws1wzplqhkvi"; depends=[limma]; }; + CAMERA = derive2 { name="CAMERA"; version="1.30.0"; sha256="074ln7d0f5gqsk9cxsckmklbx8grzh9kqjlf8zcz6j7ypnzkhy57"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CAnD = derive2 { name="CAnD"; version="1.6.0"; sha256="14nq061i69hk8yrkiq35lk7nk58klpl7lmkjzfdd8789h87218b2"; depends=[ggplot2 reshape]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.0.0"; sha256="0cx58i42dypx6sqyrmbf4gw2c2213cgjbijkq2fxf9ah8fm4ss3p"; depends=[Biobase CCP GSEABase PROMISE]; }; + CFAssay = derive2 { name="CFAssay"; version="1.8.0"; sha256="0p91q4z8kip0pqn45kspczhffv9f6mwn1p07q2bwl5fdcbs2xp5p"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.10.0"; sha256="189bhjzgcag4n216h0jnq994y439nd052yalx7ll5q7nazhw5j8w"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.34.0"; sha256="1pb1paby9n9map71jk971qfpni2m23hcwrssqqjb7byjc9flnmf5"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.36.0"; sha256="0wnyslj7yn0yc57q60w2y644lmvvvih6rzm55rrad34lz2h39bsz"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.28.0"; sha256="1bv8vivl9b0c1dp7ka9dh3gvk1z4zpcirifh7yq0p9g9yr22k0vb"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.32.0"; sha256="1cc2vz6k5lasvzj2dh8xm26j7zvvwwx8791pqhz6q2fisxq5vz1c"; depends=[Biobase CGHbase]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.2.1"; sha256="0hzj01dw4xwivy0ikyh55i2zkf61g03m6rm6xfdhc7a49y6fzxpr"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; }; + CINdex = derive2 { name="CINdex"; version="1.2.0"; sha256="096qiz86rxfhcrjs0pf3mp5zqgi3j7i4agbw53ym5kwzg486y2r2"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.32.0"; sha256="0706k4xjakyid6mkca6z6r24kbsnkvw7qzzadqkm45sy11z0w5l8"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.20.0"; sha256="0dja320m9yiaj0kp9gmygpbqffnjdpi476wwcs2gwd6yixsldl6b"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.10.2"; sha256="12z2iza0mgw9yrpnlv7447mcsxn8h183712q66f1j4a779mhn5ii"; depends=[annotate BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.16.0"; sha256="086ynj0nb6799qxgj7zys9gzxf4lvhacsqxr2qzl2hw4y13gxxkp"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.14.0"; sha256="19x8xxra4n5ys8wjqwj49qs3lg5jq9y00c36avr7cckxi9kyqqhc"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.16.0"; sha256="03k246x3yi0c3bw8h0642767p6zbgx8d0ahvnv29lcrb7wp9qsi3"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.16.0"; sha256="1zsnig3r8yqa06nfxbd8czxjk72h5z7h0vd85cqkb181bwagl0r3"; depends=[CellNOptR genalg]; }; + CNPBayes = derive2 { name="CNPBayes"; version="1.4.0"; sha256="1ly0mh6k7x443i25g0j716aflc5q2rld0fqnyr86k1x06rh0ky8q"; depends=[BiocGenerics coda combinat GenomeInfoDb GenomicRanges gtools IRanges matrixStats RColorBrewer Rcpp S4Vectors SummarizedExperiment]; }; + CNTools = derive2 { name="CNTools"; version="1.30.0"; sha256="0wcny74g377741as9dw87n4vf6yi8yvxhxbf87x0y4zkf88aimcz"; depends=[genefilter]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.4.0"; sha256="00xgwf62cs9l6pnvbp33b442q1mgaibac5fw4n2qsypdfb2p1xn3"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq openxlsx plyr Rsamtools S4Vectors]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.12.0"; sha256="1msjvq3200y637ybh2yb5g1c2z0aqk1bwjvrndrg36vlg7342b6y"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + CNVtools = derive2 { name="CNVtools"; version="1.68.0"; sha256="1lx2jhwfwya2hm8v9dkqkjhfbfp008k2k75r63wpph8yfxhyvvmz"; depends=[survival]; }; + CODEX = derive2 { name="CODEX"; version="1.6.0"; sha256="077cbv8n6mr8ksapxj2b837ms68kyzgjlk499c69q3dji456bgfw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.16.0"; sha256="14smbyviii5ghac3rhkrz87vhx6nxgv3n54k3rrzsdbrw8n0i773"; depends=[COHCAPanno gplots RColorBrewer WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.12.0"; sha256="1cmqqcsv32ixdmm9qybvafjca6lqzc652hp4jn9vy62ffb81r8i8"; depends=[abind clue data_table knitr pdist plyr RColorBrewer Rcpp scales]; }; + CONFESS = derive2 { name="CONFESS"; version="1.2.2"; sha256="1zw3sl5vzn6j8qppz39s2l11f9n2p5yzr4b17qgar6p41f83xffa"; depends=[changepoint cluster contrast EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CORREP = derive2 { name="CORREP"; version="1.40.0"; sha256="1wd8qq11xdyis0acnzlml10m0z8fazzhmvxxqa21h2wpq0yz9m19"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.8.0"; sha256="07s72x0dbsnq340v1akl4jp8m63nnxck2nvivz12cvbq8hbhz6hf"; depends=[]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.14.1"; sha256="0l3blmszil8zr03wg9pwl59lkyxbn1pa3pz967nlbwffcv2lqfa0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; }; + CRImage = derive2 { name="CRImage"; version="1.22.0"; sha256="0km82x446b1r9b27z1cx65nd9lm8ppxkarzqwqs426hj59wpzxhf"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.26.0"; sha256="15w6mmwd5pqb144x3dyhi6x2ni00n0ak94lfrw317rajq733zr0p"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.12.0"; sha256="03gpl3w7iw79gcni4xchvbkrsp7v6i8zy6aqws54za4wimwqvsnf"; depends=[]; }; + CVE = derive2 { name="CVE"; version="1.0.0"; sha256="0xmy5mdw43db9d8pd3k6d73005hba72df24fsmgp9dv5sy9rg6p2"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny WGCNA]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="1.0.0"; sha256="17jmyrcgs698g74hxp9mif7g4s175qdrfy5h1zz72fwcssmblh74"; depends=[BH Rcpp testthat]; }; + CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.16.0"; sha256="1wzbrlw5zf0pmm5m41wqf73wlsidb11l7l9llrmidbg860j0jjs0"; depends=[AnnotationDbi limma qvalue]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.0.0"; sha256="1vja80lj16icp6jblw62b24daj7izgk9wbhbwprlbgcjvkppxfik"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; }; + Cardinal = derive2 { name="Cardinal"; version="1.6.0"; sha256="1fwni0dwn1syz5j0961fpmnmifqb20hd23ysazfi3xvdq7pf1lw7"; depends=[Biobase BiocGenerics irlba lattice ProtGenerics signal sp]; }; + Category = derive2 { name="Category"; version="2.40.0"; sha256="16ncwz7b4y48k0p3fvbrbmvf7nfz63li9ysgcl8kp9kl4hg7llng"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL RSQLite]; }; + CausalR = derive2 { name="CausalR"; version="1.6.0"; sha256="0l0021qslqj0xvrkg1lpmfnwdvi03yc7y2k62iz83s7k77z0wj6c"; depends=[igraph]; }; + CellMapper = derive2 { name="CellMapper"; version="1.0.0"; sha256="1ixii9ppg7jhwvazzzjy3dq01x35yc3k81j698988dfrdls0plcv"; depends=[S4Vectors]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.20.0"; sha256="1awz7k09rx03f8dq5g9mmnlizpx6232vvc03ycah3r1wwzgfzlhd"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; }; + CexoR = derive2 { name="CexoR"; version="1.12.0"; sha256="110c7p0y3l7b491bvr78n5z8f4gmfgfjndbd8pnhn0k7abb9bvs9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.6.4"; sha256="1f8ngnzp6yq4x746vid72ind2bi7l1wdfnipyj2wn0gsh2jpxa7c"; depends=[bumphunter ChAMPdata dendextend DMRcate DNAcopy doParallel FEM GenomicRanges goseq Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICmanifest impute isva limma marray matrixStats minfi plotly plyr preprocessCore quadprog qvalue RColorBrewer RefFreeEWAS RPMM shiny shinythemes sva wateRmelon]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.4.0"; sha256="0wr9qrw9mnjl28fw764vhjb2shif6fl3z0hbwkhrfiz1974rdw0v"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.10.3"; sha256="1nabghyndp4bky6msb4k6gcxpgysz7rir545d5afrfi4gbk1rpfi"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.16.0"; sha256="19lx482jhh4h97nic57lk198a0x1xc51cnx79l9h6r9r86ncxl0w"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.8.9"; sha256="1wykx52xqnz9pcxgfzf5i0ckrw41jg0piwynx1v1ldjxajbdh904"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.10.3"; sha256="00bv8i44c33ak2v6wzzk7s963wdhzb3c03ch2v8bkmnnb99sk0za"; depends=[AnnotationDbi BiocGenerics boot DOSE dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.28.0"; sha256="0bv5anp4p220vh53khaqggwclp34k2402mfcj28wv9cfl7xhw4g3"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.28.0"; sha256="06f00mviqxgqqli6lkybryl81hvf1ica94sj1zjc9bzm1aiva2fv"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.12.0"; sha256="1f5wx3259v5whwy9h8jw7gs52n65gdby8q0lq1z9md0846i8cx6p"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="2.26.1"; sha256="1i3cdszdb4k0cj3sl1p2fll7vxk47w2fldjzwb3b24qab0xczyih"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; }; + Chicago = derive2 { name="Chicago"; version="1.2.0"; sha256="1bxb35azi6sdlw0rl043h50cs20ysgmmydlscl5nn96ajk5ahs74"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.28.0"; sha256="034cianqg08rkqi2gpw29q144hnnnjb8jrmw180lfsdqbms8hlq3"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ClassifyR = derive2 { name="ClassifyR"; version="1.8.2"; sha256="0mn5hmlyhln7yngqvq8k6ir63jhf71b1h6s3322pppbypq25njsz"; depends=[Biobase BiocParallel locfit ROCR]; }; + Clomial = derive2 { name="Clomial"; version="1.10.0"; sha256="0nabq2nng5hc1rpqhr8riav0gjckzhhfr6i35ff5dxb4md3bgsxm"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.22.0"; sha256="0qi62476ix6vm0zr7n3zvh6msl8w3lcnk8bn8c7qvynkn82ky4j4"; depends=[DNAcopy]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.2.3"; sha256="169mi6xr5jslwgs9vyx0g90n2vp3za6v0hih714bamkk4vsjpzrv"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.46.0"; sha256="0jsgcgrr8nnw8mngxcvijri94k6aq2r8svzbrif22m1v7cpddhll"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="2.8.0"; sha256="1mbnyim02l1k77r2lchz7k42x9hpj1yvcq4qspyf2rh9d9p03zg6"; depends=[BH gplots RColorBrewer Rcpp]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.10.0"; sha256="1gh9nkgxm4b583rf33g4qziz989725l42nnfyrjasjcgwb996scz"; depends=[arules igraph shiny]; }; + CompGO = derive2 { name="CompGO"; version="1.10.0"; sha256="1walrgh7bczfzms8syi2vcmjzq1xigxl2jld9v9i7v139h4yvp6d"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.12.0"; sha256="0r5d75lj0fbskizpmhbv0w4wscpfjfq9k3vbadyfs8wadmp9xvdh"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.38.0"; sha256="0lw8j9gvm227yjh0ya05j4x87a9p6s95cr7sraza0zh6qc70vgzb"; depends=[ALL Biobase cluster]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.6.0"; sha256="1bwwnsyk7cpgwkagsnn5mv6fv233b0rkhjvbadrh70h8m4anawfj"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CorMut = derive2 { name="CorMut"; version="1.16.0"; sha256="0c0wx7nldq0wsa5z6l398jnnpkxjkqj9yc490x15kyds9pyazm85"; depends=[igraph seqinr]; }; + Cormotif = derive2 { name="Cormotif"; version="1.20.0"; sha256="0wh5wj3z5q2yk9jw5wmd2adpwhl0vck19flzdwns55bfndz7s5xd"; depends=[affy limma]; }; + CountClust = derive2 { name="CountClust"; version="1.2.0"; sha256="14frvr84dxfp4ily2x40gr7phh8d39ljxnlkz0224cc7v2lnkjz7"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam]; }; + CoverageView = derive2 { name="CoverageView"; version="1.10.0"; sha256="1sfhir56rra207z8pl8px40qrc5hca8kf4zmrl2pk9zr7ksbd1z5"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.2.0"; sha256="0dvzyz3rxwd5blfcaf05viy35w7n8681wzb2lr5zdc44nm92d3kz"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CytoML = derive2 { name="CytoML"; version="1.0.1"; sha256="034ki5bi83m04c9l2m636vb5l1wj0nmvyphj1db7bhz8i0h8as7w"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace graph jsonlite ncdfFlow openCyto RBGL Rgraphviz XML]; }; + DAPAR = derive2 { name="DAPAR"; version="1.6.0"; sha256="0v176my80p7p26azczw75yqi9zdfvxjf35hjr5hprhm795bppavx"; depends=[Cairo cp4p doParallel foreach ggplot2 gplots impute imputeLCMD knitr lattice limma Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer reshape2 scales tmvtnorm vioplot]; }; + DART = derive2 { name="DART"; version="1.22.0"; sha256="0ysi99wlhb6v98nfqd6vss0c14sh87p0v13099dll18ijifvfkqr"; depends=[igraph]; }; + DBChIP = derive2 { name="DBChIP"; version="1.18.0"; sha256="00jwf6163dbrglbq1fba3380ad7wxd8swj2xcm650m41i2nf2rqz"; depends=[DESeq edgeR]; }; + DChIPRep = derive2 { name="DChIPRep"; version="1.4.0"; sha256="0l31w5xs2g9bdyy191gpslp41m9k42pq5lzd86vpm1xw0792q9w0"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.2.0"; sha256="07i9dgw4hck0jgxsj80sc68wf1d7d7zqxy8vbpf1ynf3m1zwkynp"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEDS = derive2 { name="DEDS"; version="1.48.0"; sha256="18bb887dhifdkcp0bgg4dfcx3nlwxnrakh0r000i856m5fn79zd5"; depends=[]; }; + DEFormats = derive2 { name="DEFormats"; version="1.2.0"; sha256="047cvxbzs0mg14y9005f40xjgj1pgik43jb3q5z1inipqgmj1sn4"; depends=[checkmate DESeq2 edgeR GenomicRanges SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.26.0"; sha256="1s7gjraaqvndr590wbnvjq4wik6bmbdijl6l0ribd5d7r5zic0gm"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.10.1"; sha256="0llhniqryz3fckgmkc89h89ipc7ambi323y2awwyqc080d7ph37p"; depends=[cluster coda dplyr edgeR ggplot2 gridExtra knitr logging Nozzle_R1 pheatmap quantreg reshape tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.28.0"; sha256="0p9m0bky2fa320nw22bfa270zj91aywmyp0vs67x3x4aimhirz7g"; depends=[qvalue samr]; }; + DESeq = derive2 { name="DESeq"; version="1.26.0"; sha256="18f0400pcmla88kc2prscw0skkf7bww0mnkrj6hhxyy79dhzdy86"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.14.1"; sha256="1walwkqryn1gnwz7zryr5764a0p6ia7ag4w6w9n8fskg8dkg0fqs"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.20.2"; sha256="1j3ll3417smxx1akbi3kk1r2p0m8jfrgfd35rhmr3q8b3lz3x9pw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEsubs = derive2 { name="DEsubs"; version="1.0.2"; sha256="0v35x38sh6i69m7wjwzyyjhcx88wrrz3gr5w1r80cg5rvjl8bhch"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; }; + DFP = derive2 { name="DFP"; version="1.32.0"; sha256="08jjhzqr4yv2zwdgn43r3bvh2hw0fsamicyzdwcfkamvw9p5ipxf"; depends=[Biobase]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.6.0"; sha256="196km32s5z881hsranycsmmqk1nxr3vdfhwdy9l1j179b64vz09w"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="1.10.10"; sha256="1snsq6j1na9z78mks43fhgz2iayizm4vd51kx4m8zikc198h3xw1"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.10.0"; sha256="0flr8a8bzhwcs4hhrcb8ilzr1pzlgic4d5nm8gsqnrgjdjh05np7"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.4.0"; sha256="13xc3abfm2yg7s1h0way99vcj3577p3j183jhqq4ii86c6y9c6k7"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.48.0"; sha256="1idyvfvy7xx8k9vk00y4k3819qmip8iqm809j3vpxabmsn7r9zyh"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.2.0"; sha256="0zm1c989h34iqk0w9sgz7bdz3h0njns856yhc1q7n6vfqnhhygsz"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOQTL = derive2 { name="DOQTL"; version="1.10.0"; sha256="0fn444vc1w274079a3yn79rnv6i1nhqp9jwyg0qkih53bg49519x"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; }; + DOSE = derive2 { name="DOSE"; version="3.0.10"; sha256="13m5akx9hi11906sbrbcz8q36m9h8i0wqm5323bdnlprv217m8fq"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim igraph qvalue reshape2 S4Vectors scales]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.2.0"; sha256="1iiqb3ccxh9y2sc913sw7lcd16bq54kj6z5hk6f7khsgwy84g5q6"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.14.0"; sha256="09452x6cs16b2fxx7h74midxkla7cc46paqkxhilx82nf2yrjzrm"; depends=[Biobase bsseq]; }; + DTA = derive2 { name="DTA"; version="2.20.0"; sha256="16bp4gy8ifc3ag24d6npfzvwhv4by371qilqsxnmd677pq75ccx6"; depends=[LSD scatterplot3d]; }; + DeMAND = derive2 { name="DeMAND"; version="1.4.0"; sha256="03w9vcv8ji82hhyy70mh5smib565gzjdp4bl7i1h1y3wjmsrq760"; depends=[KernSmooth]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.16.0"; sha256="0p8vg1b8arpv01cdgq37c0mfmkd824b47cd8cpdzf7nhrhq53w65"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.0.11"; sha256="1zqr0bdsf4xlkdqrpg1ihc287gppw56p9p9smy97npm2dnqygw6f"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DiffBind = derive2 { name="DiffBind"; version="2.2.12"; sha256="0w3dwhjkf0sc7bd3m13gwym03j3pyli3xy2y7dqsqn8mhm64bqcy"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; }; + DiffLogo = derive2 { name="DiffLogo"; version="1.4.0"; sha256="1pla3izw79il49vlrp21shyq13xvg6vbayrjs6kbhjih738x0i5j"; depends=[cba]; }; + Director = derive2 { name="Director"; version="1.0.0"; sha256="0g0z2pp4jk9a3sfcidq8abgwnki8za73wzvpm4xdzy5g6lrcf3y7"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.16.0"; sha256="0jrjragn40qjbrm7amg066jbl1ypxzs3h5cbd7vv35iwwvzgmgr3"; depends=[BiocGenerics IRanges S4Vectors]; }; + DriverNet = derive2 { name="DriverNet"; version="1.14.0"; sha256="19n396565sngzc3pk2dibqsza9pmp8dm1nrhlipv663r46s6j6kz"; depends=[]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.14.0"; sha256="0pbaa9dg8g0bwky2mjr3wjpavf82xd564c1wx813ivsdx8a69pnm"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + DupChecker = derive2 { name="DupChecker"; version="1.12.0"; sha256="0yrlx3w8ndij5ynfyjh0y5xyldsnsyhgw7ilnx728vfxp7zgw6fv"; depends=[R_utils RCurl]; }; + DynDoc = derive2 { name="DynDoc"; version="1.52.0"; sha256="0nd7873m3zgyx1ryyhy9bsvzzkvdvqggk5sbnai4aph2hy2lbk1a"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.16.0"; sha256="0gbl9waszvkavw68npsjq1c7yhqljgb2r0qx4f8i05cp8i0yr3rx"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.2.0"; sha256="1ikkj4mmr1rdcxsy1anc3ik3vy1hn0v262h17751y64bk2djvycj"; depends=[edgeR gtools limma]; }; + EBSeq = derive2 { name="EBSeq"; version="1.14.0"; sha256="14ny417fijjnrkz5hjj8z8s6dbrqxx0cyi85585g06nrv8mm1hhl"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.8.0"; sha256="0ahmsxqixapdjpwsr1wnmk7lq5fnbqpq7vsbs9qk2a5pl2lxzqd0"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.38.0"; sha256="1r00rdd5zlm29jc0yq3jns08cv67f9wk6lia56m52zscqcji6nvw"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.18.0"; sha256="0lhcvd49rhmcdbmxizivcn7wi9bv0av2p9mz4grpnb3a0r6hjgdm"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.8.0"; sha256="0biwxx1ssqj3isc15i7crm05cyapm47ny4jks8wr9pqha715myai"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EDDA = derive2 { name="EDDA"; version="1.12.0"; sha256="1ra5jdngpiif9wd322ncg72ik2wkapcn7z3raw6rb5ii8g5706fc"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; }; + EGAD = derive2 { name="EGAD"; version="1.2.0"; sha256="04zaykhl3dkaqy73dsgj0kqghisxgck2fjbwrvlc9j8rb2rggnmd"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.2.0"; sha256="0wd4a89l8isbgqcyls8pw5h1l68qd4k1c7nxci7q4d86vrv3xzwd"; depends=[AnnotationDbi Biobase edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview RColorBrewer safe stringi topGO]; }; + ELBOW = derive2 { name="ELBOW"; version="1.10.0"; sha256="0x86czjfzpkxs9z6fn6siapwj6320f096bzg3bfjzaa387g89sk0"; depends=[]; }; + ELMER = derive2 { name="ELMER"; version="1.4.1"; sha256="1q60yi3wqjmm2y6dfl5qjgxzhdjd22vsdsnan8mw1fl2kljjlbdl"; depends=[BiocGenerics ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra Homo_sapiens IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi reshape S4Vectors]; }; + EMDomics = derive2 { name="EMDomics"; version="2.4.0"; sha256="0fkyvmib34kwz4zzp3f0miw9bhn87hmbk0j94gla2fgxvxwby1sf"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.0.6"; sha256="0876lfyh5584nq6sqz3yyc4ixl1pfyx1wamhdfcyq6c86yi5prgp"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; }; + ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.22.0"; sha256="1h3nz1k2rl2b14hh61yqq3dng3h3k3qp48w8izfsdwjm9imxs3kb"; depends=[rJava XML]; }; + ENmix = derive2 { name="ENmix"; version="1.10.0"; sha256="17ppsfbl68fsck4nyda4x8k5sdymn52dgkvky1q4cri3xvn2kkpj"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; }; + EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="1iq62cn389sa0h3y6rj61n51a1wkjcpnq9a3la2gavddd0iqsbl8"; depends=[biomaRt ggplot2 reshape2]; }; + EasyqpcR = derive2 { name="EasyqpcR"; version="1.16.0"; sha256="1hlhvpz18q6wfwmfj0fs8saacpyaild2p7qwmgmndcv2lqpmgcrh"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.2.0"; sha256="0l7dq2ww2vi39iipazfv71i0bw6j029x3llbnd15sf7lpsplc9df"; depends=[]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.4.0"; sha256="013y7iygzf7vy1g34c2ww55m4w1173mxbwi4pn6x75r1fmnmvkai"; depends=[ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.4.6"; sha256="1xijwplmlcdi2rqp8frsbwgxby6k2mnjbfv2dw560rgcmys7n395"; depends=[AnnotationDbi Biobase biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.16.0"; sha256="11pr3jlzm8hm4bizpgwvmr1ylb41rd487mp71890paqwhv91abq1"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="1.0.0"; sha256="15254v73vi7vr7cky29i58np5ljq7iawmffrb1vir54snpgw72q9"; depends=[AnnotationHub BiocGenerics BiocInstaller S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.0.0"; sha256="1i55z69idxk3zpiypid045mssvfbysbincxfp0z8sh5gf0dipj9d"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.2.0"; sha256="07asxjzplx05jkxm05lxny4np9yw0i9ir0pbhg76dxnx7k1x1bv4"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + ExpressionView = derive2 { name="ExpressionView"; version="1.26.0"; sha256="0fy2cay5s9ypbrdjj6v5n8l99pq0fggw6gl9xh451vr2j0c8cmr8"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; }; + FEM = derive2 { name="FEM"; version="3.2.0"; sha256="1ivhzap6hcdwpy8yf1sl4gh53c24nzm22br08z8g99wl3q3apsg0"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; }; + FGNet = derive2 { name="FGNet"; version="3.8.0"; sha256="07v32575vws879745zc1c75rlwbdrybijhbc3hs7s4w4nz574lfc"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.8.0"; sha256="0fn92g2zzv35xhd28p5zb3qqhqy9hflz4d1sk3cjajpav26k9dnd"; depends=[abind EBImage]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.10.0"; sha256="0ccp7s4qg2mf0mnz9hvasscgc18nmqmjrfwj9k2x1nv6rhph51cv"; depends=[fda MASS]; }; + FamAgg = derive2 { name="FamAgg"; version="1.2.1"; sha256="16iaj8zn12kq89sksq5dqgfxyb5048vdfhvjqgvp455vi74jkx9z"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.4.0"; sha256="1r2jqrsgsmrlz3fa8qp7pb4bxh6am2xmgafnk5xh679kyvdhp4dh"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; + FitHiC = derive2 { name="FitHiC"; version="1.0.0"; sha256="1pzywxdn2qkkfkhnf1n4d9fnvz3kz4301kxqmszj3d10z2wlhzab"; depends=[data_table fdrtool Rcpp]; }; + FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.6.0"; sha256="06z3wandk8vaabkbmm0w6jaknimysfm16r351alg28ajznxqiw1n"; depends=[jsonlite RCurl XML]; }; + FlowSOM = derive2 { name="FlowSOM"; version="1.6.0"; sha256="1lbyxhs59cc3mfqbgskgnx5vbly6rr2dswn3hwlw5nh2idpwnwfn"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; }; + FourCSeq = derive2 { name="FourCSeq"; version="1.8.0"; sha256="0n0zsmh48vy756wg3rmnsqsl0kyy8wl1sm97c0w1yp4wpak36qqp"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; }; + FunChIP = derive2 { name="FunChIP"; version="1.0.0"; sha256="1l0hyg3scp0b1xsx7xl8x6629iaf155k50vykjk17kb6aand5p19"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges Rcpp Rsamtools shiny]; }; + FunciSNP = derive2 { name="FunciSNP"; version="1.18.0"; sha256="03wzrrdhnp6svf4vy907h6bbnpfgrbqhqabsah37qzld15qm2xs2"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + GAprediction = derive2 { name="GAprediction"; version="1.0.0"; sha256="18675g9405x4bhbgk1y3lc011cz409qgqgmnsr9pg1cr1cpfcgqh"; depends=[glmnet Matrix]; }; + GEM = derive2 { name="GEM"; version="1.0.0"; sha256="12y8pnbvfmid0spid61nxlf79nnq64yd1q6as7mi95nqgf498lcb"; depends=[ggplot2]; }; + GENE_E = derive2 { name="GENE.E"; version="1.14.0"; sha256="07qc96cja92zbs87qmrpxl6jym96vazygybmjvkxzb3cmw8ivcrg"; depends=[RCurl rhdf5]; }; + GENESIS = derive2 { name="GENESIS"; version="2.4.0"; sha256="1gknm10fjgry5arz60y6yvkdpiwf1nkvyyxdgh2jbslz6ypgcy57"; depends=[Biobase gdsfmt graph GWASTools SeqArray SeqVarTools]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.34.0"; sha256="0gjzhx3x1945ny8wqp1w6gwgbx81wsqbgc9l7sd2wqnf85w5y513"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.40.0"; sha256="1p4dsmbibhrjdffkh8z1fff4j85jczwn4djnnpj2ifvz2x05q3vc"; depends=[Biobase httr RCurl XML]; }; + GEOsearch = derive2 { name="GEOsearch"; version="1.0.0"; sha256="1xz3mizjh1nfmc4726jjj38qdn5byjwlinwbd3j0k2qw5dvzmjaj"; depends=[org_Hs_eg_db org_Mm_eg_db RCurl]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.26.1"; sha256="0niagqjl5sqi4frjj23glgib0js1gf7p7lj4qbz8lvkg1arj2kba"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.18.0"; sha256="1faw43mvv3v9yl9lbllx0gj588i7r9rfm453mwq80v9adllrnnkw"; depends=[car]; }; + GGBase = derive2 { name="GGBase"; version="3.36.0"; sha256="1wmxv6wl6d050xjc0sc0z2i74y3xnnr6vmdynipcncbsrmsw91gv"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; }; + GGtools = derive2 { name="GGtools"; version="5.10.1"; sha256="1cngmdk9ggp38gbp3kqs74ixa5ak5cm1n09z1lrhg110byim79ry"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; }; + GLAD = derive2 { name="GLAD"; version="2.38.0"; sha256="1din6jgb2n6qs6g10133mc506y3bmc2gpwdcj6q8fm3jwq3iw769"; depends=[]; }; + GMRP = derive2 { name="GMRP"; version="1.2.0"; sha256="17n77baq513wxnh0dh313h7bpj01jkfs4ybac1w5bmsqbafnakz8"; depends=[diagram GenomicRanges plotrix]; }; + GOFunction = derive2 { name="GOFunction"; version="1.22.0"; sha256="1gn9z2si5jg7db28ldmgj03b0acv9mq884srmgjyq3ar705hkvd9"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.0.4"; sha256="1ii12y5yb6mby76c193ampvjk0klsx3kl0h6qmr3359sdx9mcbiq"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.12.0"; sha256="0539da5ljil1l158bdrj7xmgj7da33kwqk8ng5snwv9jzvmynrdn"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.10.0"; sha256="17n51iw61xyfiladvrz36ksvj6sdfgmhbxs9hx25g3j5biv0sxw0"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.8.1"; sha256="00gnznvyg2mpk6cv5jk842h71awikw3qbzg43vl72cxcb8iai7fj"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr VennDiagram]; }; + GOpro = derive2 { name="GOpro"; version="1.0.0"; sha256="0wypc72p940b2jh8s83k4hs5m4flvpr724xgzscygcn3v25b23c7"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.40.0"; sha256="0g2czm94zhzx92z7y2r4mjfxhwml7bhab2db6820ks8nkw1zvr9n"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.8.0"; sha256="05aws7ln6jxisgmxkx3m3lfz87i8ayy8bdm8lgjyhhskf5gq7yzn"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GRENITS = derive2 { name="GRENITS"; version="1.26.0"; sha256="1x1rxs3id7kbp7lf3a8460qh6p0mlhx1w33yyy20cd45y407xxji"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.0.0"; sha256="0pviyq23gsivqxm9pzxa5d911f32m3p8gkav9hbsn2fm2x7g8k07"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GSALightning = derive2 { name="GSALightning"; version="1.2.0"; sha256="0hxjlnzwk16s1qxnd1dsd8f9zbwqnpq7vyrr3ag6yq4xm6rksr9v"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.8.0"; sha256="0wdz3jx1dnw6w71r3spfi09nqyndvb0f610qci50s824k593aglp"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.4.0"; sha256="1fxc3s891flai43j8i7bp9q3v6ynkbd4yx6y5rgvf8360bl62s3z"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.36.0"; sha256="0l2x7yj7lfb0m2dmsav5ib026dikpgl4crdckrnj776yy08lgxpj"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.34.0"; sha256="0ykxpki36spgb562805k5hi2cyp984gjr2flq591vc8qhz87d1ry"; depends=[Biobase]; }; + GSRI = derive2 { name="GSRI"; version="2.22.0"; sha256="1dml01y75yc2f3ra65ha4ah991mvlzdnhkzllqxlah0gayvbhw52"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.8.0"; sha256="0ccghcpdpaa3dfaxbg682jll7gj6yh6513adffyi7q9qif6rz4jx"; depends=[]; }; + GSVA = derive2 { name="GSVA"; version="1.22.4"; sha256="1v0znan5xyd1b3cr83ag83sk5ipnifn3882qcnfz6d26b5rq5cdz"; depends=[Biobase BiocGenerics GSEABase]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.4.1"; sha256="0n21pd96q9xj6ljamq40zld0276dj4raiwdak8l27y37n1xq5bna"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GWASTools = derive2 { name="GWASTools"; version="1.20.0"; sha256="07ql1iihqvmks7pzlwab6hffsp7d6by8n7sq9mgi5zqwdy1kdyw3"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf4 quantsmooth RSQLite sandwich survival]; }; + GenRank = derive2 { name="GenRank"; version="1.2.0"; sha256="1sp43mr40dnfmxavqrn3bhbwkvrx229q7kvbwv4xbzl9980y2mwq"; depends=[matrixStats reshape2 survcomp]; }; + GenVisR = derive2 { name="GenVisR"; version="1.4.1"; sha256="0a4nnq7nkmza8kyx6jq321rzfh843cj9yjn36pqam2w3gkx4a5q2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI FField GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales viridis]; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.16.0"; sha256="164vas8gkrs1q9s3vhnb1f1lkqlndd5n2v7q0hb0rndjg0b08ryb"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.4.0"; sha256="153a1ca44apavrf09fc8gwyvqbln6rwjpcjq6cxa2ixw714xvmk1"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.20.0"; sha256="0v26wyibllqw1mwncb4h8m3bg0x8zm9iv6apadp7n91x0zaqflmd"; depends=[Biobase PGSEA]; }; + GeneGA = derive2 { name="GeneGA"; version="1.24.0"; sha256="19jr504whini0csk8cir3rs8fwccnrpf84kpnhphsc6j7ypy45qd"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.0.0"; sha256="15i67aqjvss9g8irh6ifr000y37irxg2glpg9qajm9kpwjvsr8kf"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.46.0"; sha256="1zxn1wm8wzia561hgljdyp1djidr1bzzb5kxpb73jwpxb43j8pd5"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.16.0"; sha256="0mkd7ny0h0j53daxz7zwcbgnk85rmkpbsj0p4l205g3nfwa06iip"; depends=[graph plyr Rcpp]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.10.0"; sha256="1y8n4r2gps65sz1yhhzr1n0frv79vwm2j9vxvs75v6c3a236x4r0"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.30.0"; sha256="0ac6qqzlnl29hkxyxyn6rvffg8klfp9qps0bx9hgmmhj60iwzqdi"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.18.0"; sha256="04asjxn49vipaidammf568gf4gfck6d0300hdydxkpbzm8frpn0n"; depends=[Biobase limma MASS survival]; }; + GeneSelector = derive2 { name="GeneSelector"; version="2.24.0"; sha256="1d99hqmp5jrwaq08svzvliqfli9r4731gmj3d9ly6rqaiba003zf"; depends=[Biobase limma multtest samr siggenes]; }; + GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.42.0"; sha256="0mx55dqrib9ik0nvh96l5nz80hslz7ihi2lri98nlfanm1ckmgjn"; depends=[gmodels gtools mvtnorm]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.36.0"; sha256="0z4zqni9sncigi89c2vvw7pian2zlni9rhbc9l39ig2970zyvh7s"; depends=[gdata genetics MASS]; }; + GenoGAM = derive2 { name="GenoGAM"; version="1.2.1"; sha256="04r18wff2zjkb0hh731ssl7jplb8kn4lrmls0zzfl6iqgh539vvf"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; }; + GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.34.0"; sha256="0088s233lj2p0vy5wdw049zgakppvzk1zf07k628yaz8ckbgjg99"; depends=[biomaRt]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.10.3"; sha256="18g24cf6b3vi13w85ki2mam6i2gl4yxr1zchyga34xc3dkdngzrw"; depends=[BiocGenerics IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.10.1"; sha256="1dilghbsyf64iz5c0kib2c7if72x7almd5w3ali09a2b2ff2mcjk"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.26.4"; sha256="1y16lqach0v3ym5zhdhj4r2imfi0kpa0djlb51hj85yf7xkzwdlb"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.10.3"; sha256="03yqkl2yjdz999j1y7azcs16vg0vydrqs6sxcfkgn11fiwi6i3l2"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.8.1"; sha256="1lqwyz6ms6iw8sl2l52xbaaag10lp3k8s03c9326hxhyy3ba7c5f"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.26.4"; sha256="1789ycqzv20d8p1axkxrhsz9v0ww6w1dk2mfvm85p8j53zd1f67c"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.8.3"; sha256="1wxcz06gywipyv0cnw8w7f9wccbn90l0h07zspwfd0l0d4rmqh1p"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + Genominator = derive2 { name="Genominator"; version="1.28.0"; sha256="0aayjr0sw9xqy4y2xyfbmbk7cbc81c5f0kf6fhdiswxl1v5f43l4"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; }; + Glimma = derive2 { name="Glimma"; version="1.2.1"; sha256="0gqkm41rsdkgq15b3w2hv3n77kp85sirnypdav7g3lq00r8q69iv"; depends=[DESeq2 edgeR]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="3.42.0"; sha256="0wxs7l4jx4c54bafvif48c4rlnv5vgl658403j4gp6w2xapbi4dv"; depends=[annotate AnnotationDbi corpcor globaltest]; }; + GoogleGenomics = derive2 { name="GoogleGenomics"; version="1.6.0"; sha256="12jpp6j4pzx5agnshzxa42izxby9iwl5vpaj2c7bh1m07xn35qkg"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; }; + GraphAT = derive2 { name="GraphAT"; version="1.46.0"; sha256="0gynda9y1px750ffgxprs8nlq85gxfkggvg9g0qdwsw32gn5s2nw"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.38.0"; sha256="1p6qswivfmapm0qh58r0chp9jqc0yljpx9c405viss36k2sxv7k0"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.16.0"; sha256="0xmcg6d5v7qzi9kxvgfigxz2zv0fgpsqrvwq3dckvziqpv214dyc"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.6.0"; sha256="16rv1z40j4wkhify0xf24afd7f40pmwjm1r1nq5zhrz4im7skc8r"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="1.12.0"; sha256="1mfp56d4wqml5ki5mayq3cd4zidgm0jv1gxl9g04nxp7jzzcm6c1"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.18.2"; sha256="0gdd1h474gyy7g5cwrjzy6dwddblpg9gqnig5gdcbdzl0ll8kpc4"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HCsnip = derive2 { name="HCsnip"; version="1.14.0"; sha256="1vmh1j954pj6xfafcgwc6wfw066clqdggc79360anbr9rlfsmjkw"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.2.1"; sha256="07c4xp9v6rvi2zpg5r504rjp041h438djz4x1d28ryxpmp9sgj1a"; depends=[BiocGenerics IRanges rhdf5 S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.8.0"; sha256="0diq8m2qrv42hknyvhzgjxw17jykxaw1qifpm4k4fidp55dgd9qf"; depends=[]; }; + HELP = derive2 { name="HELP"; version="1.32.0"; sha256="0qypbj5vvv0r75izdarh48y94jc1b0msn7rnhkcqkpqcwpdfxgpl"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.46.0"; sha256="0gsqfpg10ywskcn782h7saqqhd8y72x4cxd3z9vhwdz3rkf99maf"; depends=[Biobase]; }; + HIBAG = derive2 { name="HIBAG"; version="1.10.0"; sha256="18dr6y6fw85hip4njzaax9sjr02xbwcicjmrxsdq4g8gx5r0rrsh"; depends=[]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.16.0"; sha256="1syy98jgim2adchcc4ni1xji3ssixbawqafrkzq68fspsh467yc6"; depends=[geneplotter IRanges]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.14.1"; sha256="145lbxcv0fqqby9y5fzrijvmm6rhmqr0a6n49n8syq03ibg1pa04"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; }; + HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.26.0"; sha256="0zh3zlkgiwk1bsxv3j4bwf300531ifpg5hyniwal732zm7xbbiq3"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.4.0"; sha256="121z3hmpgv3bhg28ns1k570s11gicmsrp4a2y4jndarxrzdi5f7k"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.28.0"; sha256="19gfjgf7d2xqb9vr5sg45yp2d0jmqx3s2s2y71wdg48508xf3990"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.2.0"; sha256="0hdravpr71mp34ix486nx7czrfz9pqg045m4c7rs7d10p0vb76cn"; depends=[Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.46.0"; sha256="069826gdbb4xzdbizxzfn8z681vvrchk20k8awd7r7n3i01gbz5f"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="2.20.0"; sha256="0svmlq531jasggndz1n8b6sh97k9pj1i9a0w2k5iz17cpg89w9sp"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.0.1"; sha256="11z2d0d98l0wgxd0dicrph6ldrgvdrngibhgkknfshzcs4c6yqkv"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + HiTC = derive2 { name="HiTC"; version="1.18.1"; sha256="0l3a7f4caj2ijd54swjgz9893hy5yn2bv0gp9mjibj5x0hgrwbmf"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.4.0"; sha256="132dn6l3g70wfznwfqg33f7saqn8av2p8nbrbymipavy5jmaki1s"; depends=[circlize GenomicRanges HilbertVis IRanges png]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.32.0"; sha256="1k2lmvjvzfj73fpfd3ri4ifwvb30kd5k55cssr0cz2fx37rd8hiv"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.32.0"; sha256="1v0s125k56nmjpmk4352ygyzi0w8is8ispqgyjcgyfhzn4fs46aw"; depends=[HilbertVis]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.18.0"; sha256="0g62cgmy6g150fhjx2v4xk8mg6c5glz2h6ry89dr8pk5czfxqwcj"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.2.0"; sha256="1m8m7zhj0hwdnb4z93dh918jynp3amnxwv0yl9zflf54nwg0p8y0"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.8.0"; sha256="15gskfs84anw2x902zhldsh8hzfhyrv9vjlb8qplkmd7prskjs48"; depends=[rjson]; }; + INPower = derive2 { name="INPower"; version="1.10.0"; sha256="135xlhcv3h1rkipdy7vp2knr8gqgcfcsadcrl9a477iaps1ljfg1"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.4.0"; sha256="15bn5x42igdxrj1fg9fzi2rgy1c24nxgwpqxxipqkippr985ybvg"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; }; + IONiseR = derive2 { name="IONiseR"; version="1.4.4"; sha256="09vv5h8zwwlkc3azw1hb166wbhafdz9q7pd0xxcckwm596sbpnc6"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.0.0"; sha256="05g41kx40n7kv8cc51khg6wql7i8p5h53g873xvccld5vpc8dish"; depends=[CAMERA rsm xcms]; }; + IPPD = derive2 { name="IPPD"; version="1.22.0"; sha256="1p0c5wr7lcarmlchfglmjd7d8r38mm262g8wyj7dljknlbw1p2n1"; depends=[bitops digest MASS Matrix XML]; }; + IRanges = derive2 { name="IRanges"; version="2.8.2"; sha256="0x8h74ik3xwdnwrkn89hq5ll0qa1lp9jgzlbmpa02dpws7snfwyr"; depends=[BiocGenerics S4Vectors]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.2.0"; sha256="1j9ckl0xq10scrrc0nr7522pz39bd5wapmpkgnlz93rflf90jq3g"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.34.0"; sha256="1i4b94wngb6306dq5mx9vnmv69i6pl19c7kwrwmdfiq8hsl47wq1"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="1.6.0"; sha256="04qa9i4jkq3w040y3pzklld5p8v1qirr5vpglj3r8i01mj5r7krf"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.46.0"; sha256="0mfz0k2p2jsbm1rchylrl2k222p96xjdplnl0zgkhv32747svpv8"; depends=[survival]; }; + IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.18.0"; sha256="1v98zqp5hyix49rlzvpiv289fsivcs602xi9bfhs15p9z33599qy"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; }; + IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.22.0"; sha256="0kvs65qny43q4s0nkm9g8giv4d5qajpr12620208jhwbrm6jpg99"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.8.0"; sha256="1irxfpdf8i5zx96bw1v9pz5v0lrjb2z5gxzmfyibgivfp6dl9xj6"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + Imetagene = derive2 { name="Imetagene"; version="1.4.0"; sha256="0h80hwa8ksqwbhrwfvqp09yzlfqncrg0s6j48h9p4rhzf8958k6p"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.2.0"; sha256="1nw7swi6mq2gs8qc8k8psfzfrkxcbdkmc7vz8shsiszxp5idfy8b"; depends=[Biobase data_table ggplot2 gplots gtools pheatmap RCurl reshape2 Rlabkey scales]; }; + ImpulseDE = derive2 { name="ImpulseDE"; version="1.0.0"; sha256="0qaq5gb19zdp4z2vhmn0gm3f1ccc8939nvcmaca34w51g4l1i4c0"; depends=[amap boot]; }; + InPAS = derive2 { name="InPAS"; version="1.6.0"; sha256="1mkp059xzx0r1a3jv59pbwnwwkcg2kyrd2amxblgd27418j3g0mp"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.2.1"; sha256="0ax3qlsvm6zqfgli6dm68d1ip1cr74db8xbhs63mb6l84nni14y5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors SummarizedExperiment]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.10.0"; sha256="17z67xxq9vs80nl69bv4n9932dvwhsvra7k2wyj4gj1mmh11v6gg"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; }; + JunctionSeq = derive2 { name="JunctionSeq"; version="1.4.0"; sha256="1x7ngcyhcyi5aynp2zig24rpkkmc8bc8b5f4zlfvkxq3igh8gyri"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix S4Vectors statmod stringr SummarizedExperiment]; }; + KCsmart = derive2 { name="KCsmart"; version="2.32.0"; sha256="1ppvnd6rs4bwxjr6qhhz5wd4fx9r3xg2mr0zjs8y7srm3k6k2djl"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.14.1"; sha256="0dcdmbkqxy0d4gg8lqlaflmjljzl9h1p2mlxnmvwgx34vnpx386y"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.32.0"; sha256="1r5ib197swfr38ia0g23d78kx0dkgjssjmi5fc18z3nfparhkxdq"; depends=[graph XML]; }; + KEGGprofile = derive2 { name="KEGGprofile"; version="1.16.0"; sha256="1ir3vma3n9bh8bkym0h5p2s6wbi7cjsvlz99mc34nkzqn0jxm0yl"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png TeachingDemos XML]; }; + LBE = derive2 { name="LBE"; version="1.42.0"; sha256="103m1j86mlqrrjzy9w5zms0hksqjbn20jqnrf83fga4z958w32fa"; depends=[]; }; + LEA = derive2 { name="LEA"; version="1.6.0"; sha256="1ckygk393awmd963g7jykmfzcpysgi4d29psc5iqdz0h2cxrczjd"; depends=[]; }; + LINC = derive2 { name="LINC"; version="1.2.0"; sha256="0658n1pqm9ccq0s3al7xiljysfqg06wsr0zn9hqb4bafr7amycnf"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; }; + LMGene = derive2 { name="LMGene"; version="2.30.0"; sha256="07dchmzvdp2m2ky2f0vs32ch7cg2fgibmfwsw0din0rx96q0g3y9"; depends=[affy Biobase multtest survival]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.0.0"; sha256="0cbr5124rix2lib3gscx7ci1ir4mj4dy5npmxi506804a27rs6z8"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.4.0"; sha256="175k4j4yj3j95gy2h7n3yinqf95l8g2vvhpsqc0j9wrpj0wwqyix"; depends=[BiocGenerics data_table GenomicRanges IRanges S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.48.0"; sha256="1r86lj75qk9inhslh6m6cvk4d57yqxyxssp85hci3w48axz9gnfg"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.34.0"; sha256="0fa4cq3yph30mdlx9wk8k90hwy2plflfz2sahighl0ahx98b7mij"; depends=[LPE]; }; + LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.24.0"; sha256="102r6v36q2m03jfc65l5az4570nf3f30klkhqbsb00w0fqhmyi97"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; }; + LedPred = derive2 { name="LedPred"; version="1.8.0"; sha256="1hi6y7h7yxw5dgj6aq2z48wf8qaxz9q5qd68m41myicwzgva7b8j"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + Linnorm = derive2 { name="Linnorm"; version="1.2.11"; sha256="07cgs6q6svkf9l9qn41702mzank6v1hm4z3isz9cdxlhz586r4cp"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 igraph limma MASS mclust Rcpp RcppArmadillo statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.28.0"; sha256="1pwcdy4gp1vhdx6kgcligmr5pha5hx03yf3r0lidskcrzydk4sms"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LowMACA = derive2 { name="LowMACA"; version="1.6.0"; sha256="07lgl3hcgdiin1r7ws5g7s0jw371v6qlzici0myjz9hw8p9p8gwf"; depends=[BiocParallel Biostrings cgdsr data_table LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.2.0"; sha256="0mi82fgkl9bn9x9mhx4zw8cg0acmqsmw22v824xd2ik6c3q017pv"; depends=[circlize data_table dplyr ggplot2 ineq LymphoSeqDB plyr RColorBrewer reshape VennDiagram]; }; + M3D = derive2 { name="M3D"; version="1.8.2"; sha256="06hxxvbk2jpbsyksvl7blll70hg2qb1kg44yv0vaa4a12cq8a1k1"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; }; + M3Drop = derive2 { name="M3Drop"; version="1.0.0"; sha256="0adfklx4nzsy2xvz2gngqlyda4a0avdj3yal9brdk27826s2hyqf"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.0.0"; sha256="1m4mfrijyin27v0wxvv9p5i6zxiwkc0hmsriccs58qq9x4zi52ik"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM zlibbioc]; }; + MAIT = derive2 { name="MAIT"; version="1.8.0"; sha256="085yih04ah4rbbzcchr6qvb69bbvbwsxbfmzd8wfvjdg9r6z3j8v"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.46.0"; sha256="101rdapxpvjd383mykx1l6n3h3xvh6z1q60mxwbndwfl429fypy9"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.0.5"; sha256="1462b82alj0lbjl1zpfq8i2h3zxj38r82dvanyipg4m468ynmws7"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.8.0"; sha256="0isvf0n0zy7q5vhixnijrmyhdb0zpn74ddqdczgp3j93ripnb04q"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.8.0"; sha256="0l3crgq2i263wq5l91dzbj472bp0y4khlxklikfir1793sgzhwi7"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.28.0"; sha256="0n6f61w5dq1hz80s434zzn78nipi75jn8zwaisgi77kb5k2xrss9"; depends=[preprocessCore tcltk2]; }; + MBttest = derive2 { name="MBttest"; version="1.2.0"; sha256="12yqdgw3wzmzvvfdvf8lb5lyif4cpchdk21ik2k7r7qsvfwkcqnd"; depends=[gplots gtools]; }; + MCRestimate = derive2 { name="MCRestimate"; version="2.30.0"; sha256="0sc3grx8l97cdwxvjvbmb7a3hnqbi1f9lqd4a12n2zcwcv6xr8ly"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; }; + MEAL = derive2 { name="MEAL"; version="1.4.2"; sha256="05gk7gs70i36xw4sxzrwlcdkbr9bprqgg0hlqwcynyl3x816s3qr"; depends=[Biobase BiocGenerics DMRcate doParallel GenomicRanges ggplot2 IRanges limma minfi MultiDataSet permute S4Vectors SNPassoc snpStats sva vegan]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.24.0"; sha256="1gincnn8ay83rzdm3rgd8h9fgg7s1j8i8s22pn1rp073pph582yf"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.34.0"; sha256="1zrxd0bqayxbbgmpqj77lij58a4szsr3y064mmn4manhmij3hbml"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.8.0"; sha256="0m4g0np2f5yab1h1j8swfhkgnl1s2a0xw5cvbg7l5pbmzs2fkxa1"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.8.0"; sha256="0i05pcgk5axjr1piwm5g6wb7zh4hwya1zbvvrfr4v8rwilsyq27z"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.0.0"; sha256="0qbmndrvn19h8vnx2qhcpa175hvid1vlnzzi9177x73naj2lyyv3"; depends=[annotate biomaRt]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.12.0"; sha256="0nzl95cnhf9d38v8gaxy2hlqgxbzzllvh71k5sa335zfr0p1lzr8"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.54.0"; sha256="1fg8l1digl14ijr53bwarbqwcaj5374vmqdkvy5jfg2s06iwdkym"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.22.0"; sha256="0awiqvhzzvgqmacks3yxl4a6savc39dv6brf8m0lz9rcl6cgzsza"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; }; + MLSeq = derive2 { name="MLSeq"; version="1.14.1"; sha256="1wdh4rpsfnv1nzypgqm4y9c4vzv9z8snrb0nh2s9ssbcc7cwkpl7"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.2.0"; sha256="1zy8whabpqbl1cfhh6bjax97snyy6pqfd8dqa7w21s6y4wg9krzd"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MODA = derive2 { name="MODA"; version="1.0.0"; sha256="1fh26d0gfisif8v1ms321mj08202kfqngvghpg1xzr28cp59h9c8"; depends=[dynamicTreeCut igraph WGCNA]; }; + MPFE = derive2 { name="MPFE"; version="1.10.0"; sha256="1d2b3mhcjxvdq99iqj96gygq9bivg95n2n7jxscy3gdkzpf70336"; depends=[]; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.8.0"; sha256="0g8pygqqxb4g5hh47n9jwikim8hakrbppn85ydzq4hvrsjysjdxz"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.8.0"; sha256="104h4f0jnhswn4sbr5r1ivd7g1r4gdrrjj3a0kd7p3ckl542vwcq"; depends=[mzID]; }; + MSnID = derive2 { name="MSnID"; version="1.8.0"; sha256="0fkk3za39cxi0jyxmagmycjdslr2xf6vg3ylz14jyffqi0blw9d5"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; }; + MSnbase = derive2 { name="MSnbase"; version="2.0.2"; sha256="0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="3.6.0"; sha256="1p9000y7ca94vingg1gdd6sdxy3p0njqdinxhy3raf4gb4hmnv7y"; depends=[data_table ggplot2 ggrepel gplots limma lme4 marray minpack_lm MSnbase preprocessCore Rcpp reshape reshape2 survival]; }; + MVCClass = derive2 { name="MVCClass"; version="1.48.0"; sha256="1jd2vh63j4jj0q4x05drrwfkn7qddxq96403ambkavcxcxs3z0x7"; depends=[]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.44.0"; sha256="1r1lb71mw7fqlmfai7d2lbij3n9pjpvvng8lx0fpbzaxghrbcd37"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.26.0"; sha256="152wy0h3zrfqyf444m7mcp6gvnx4q10ahj5nziwdp26k7zjm4jx9"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.40.0"; sha256="0c734mvynmyir7pcfy8igvvxk8y3hvcpkazsjljykfjvjs47x49p"; depends=[waveslim]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.6.0"; sha256="0khdgn3kcj1mw5z8d2cz781n56myqgxalycg9317dap6r2hng11x"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.10.0"; sha256="1jyz50q4svakq8ckwnrfyc568ryhg3jxl920v7s477nxj2854pa1"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; }; + MeSHSim = derive2 { name="MeSHSim"; version="1.6.0"; sha256="1ab92abmyw469v4gzk6ki95j5m9ivdwr7v74hgh8jr5zw674gfzp"; depends=[RCurl XML]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.46.0"; sha256="046yc0bvqxxh5x83zy7qq6b5cyhzkcg78bgyzz9w7lb7sim0h491"; depends=[]; }; + MergeMaid = derive2 { name="MergeMaid"; version="2.46.0"; sha256="07ann5kkbp0kz2cplks934yy20ixnqjz1fnhd292lbsq493www1x"; depends=[Biobase MASS survival]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.2.0"; sha256="187w71dr1brjz6fhdlxxvanipn9rmkyfrp5ij943y3jca0iibbij"; depends=[]; }; + MetCirc = derive2 { name="MetCirc"; version="1.0.1"; sha256="09mw5nqvp5pj8dma7fqdiiw5qqxm3m51s2r4ji3shiliq961bkw4"; depends=[amap circlize scales shiny]; }; + Metab = derive2 { name="Metab"; version="1.8.0"; sha256="1kb41ld1fxggmwa4chzpwnfy6473jhs79386k0py9i7z9myaf7pj"; depends=[pander svDialogs xcms]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.4.0"; sha256="08j76zdkzg42j3x1h5dzw7qkx44fcj7bwigrv452s6frkanhb5ij"; depends=[AnnotationDbi biomaRt hpar igraph KEGGgraph KEGGREST mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.2.0"; sha256="0phja8mf6vi913kjypbyx25j9bgqj25iis4jz1y7hbafvy3vx4x8"; depends=[Biobase randomForest]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.6.0"; sha256="15vbqsci33fbcz94va64w53qnzx4hqzv2ss4myhy9kavk4h5ma07"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.8.0"; sha256="0c2y6r72ypgc9rjyk4779l0s3x3wpdm88ygab5zdfi9sgy108r4x"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; }; + MethylMix = derive2 { name="MethylMix"; version="2.0.0"; sha256="06zq28ns2h2l6zlrwhgrf80ac679fq3qbrlcn0rshwz2vwbk6xha"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.14.0"; sha256="06kixgxrla3rvxf6xsg4r4yxi9qld6kx82p9xv2x978qsx717frr"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.34.0"; sha256="1bzi6kwpbkr8g4zqxw517grl2sc4pq6ph4m4vb4hmn6x6qxlijlr"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.28.0"; sha256="0lxdcmfy1gpfpmnagg2649dbq9rj13rggv43n79l2f033awbpsp8"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.46.0"; sha256="1280c04222l2hbapbw7k6rnsi8hrbpd0w49gvx50sl0mkl3zq5gh"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.16.0"; sha256="17ys0qwz8y4ka81ynzp46fcy5qi6mw7y7vsffqvgnsf587bdj9ia"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; }; + MineICA = derive2 { name="MineICA"; version="1.14.0"; sha256="0si7l560d14vhz4k8p0c1fqmr85f91zcfz3vh0fbnyg3m4rh8yz2"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.18.0"; sha256="1zl8ravn0dpb6ca3f9k92p7wdhz7afjy7cx28nx0hv71aqk1q5i8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + Mirsynergy = derive2 { name="Mirsynergy"; version="1.10.0"; sha256="1w98swg02n1gfk1cgjvzi09wwymn8v6v3gjlm58sgj0j47h8l4c6"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; }; + MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.24.0"; sha256="1g6wlk8qlszc42jqrdlwa340p69h7fk7nmdrk0k0rdl1mmjsmcs9"; depends=[Biobase lattice limma statmod vsn xtable]; }; + MoPS = derive2 { name="MoPS"; version="1.8.0"; sha256="1z0m6c61sp6cljaibskrk8xywpkgx4m3d2s8rdq3hs99x6w1f200"; depends=[Biobase]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.0.0"; sha256="10r0vnyig561d5hrvhbb3srr6v1lndgjxabj03adhmn7nbv4iija"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + MotIV = derive2 { name="MotIV"; version="1.30.0"; sha256="1zq22llziicgfsh9ykf8blf9593h4yw3nhr58alvvp5hjjh2pz3r"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.16.1"; sha256="105a320znvrdkwvsixv1ddaiax1ay87wr4675pv4j79xdjh7by2z"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; }; + Mulcom = derive2 { name="Mulcom"; version="1.24.0"; sha256="0mlmb9lk71676dz45812ni72vbid2hv2v9b1i437dr69qnppm126"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.0.1"; sha256="0vq7xfw3wv7i07v57qz2b3v599mfp27p6fxadlsqjql9v5jy6kk6"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors shiny shinydashboard SummarizedExperiment]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.2.0"; sha256="04hrqi8x2fsfnpyk344kfrvfl66mv1lx3kdqs7ga9wnfq98b82b2"; depends=[Biobase BiocGenerics GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IRanges minfi S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="1.8.0"; sha256="1185flg1grb14m00km2v6z4ypl5lh6p4p05wsxq231g255aljq64"; depends=[]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.0.0"; sha256="1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF plyr pracma reshape2 SummarizedExperiment VariantAnnotation]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.22.0"; sha256="1dbbnlbbjqvmb8adppkacl7qrxic4gavvcmh0cafpvsm3ybs4zvb"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; }; + NGScopy = derive2 { name="NGScopy"; version="1.8.0"; sha256="0hc103pa3qbd6pd4578wdrczd4sljhb408lclkjlv3abdc6x7247"; depends=[changepoint rbamtools Xmisc]; }; + NOISeq = derive2 { name="NOISeq"; version="2.18.0"; sha256="0iw4zy01a0lk6n60q4kw3jmgha41dxchidzg9rbsbsci3ysnl3h5"; depends=[Biobase Matrix]; }; + NTW = derive2 { name="NTW"; version="1.24.0"; sha256="0cqc8rgkx9gqhkc62csyws7c23nf94pwigiq5myirgamga314cqb"; depends=[mvtnorm]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.4.0"; sha256="06zln140q6r00mhi820hzgw5zincr1kg56h3387iikyw4hyq53s2"; depends=[Biobase matrixStats]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.6.0"; sha256="0848h8dmbk0gj4w0p77bi6byqil76ggaikqqdxflyzv39zkw28sc"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.18.0"; sha256="02g8rbqaddcy4w9i2ma0xmzdb84bykba3p3zmv1lylh77knmxdrw"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.10.0"; sha256="0ssbmp0qkvnvii646zj2qiwzrn8cyi6jvg7h937vbr6vnzv643cg"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.14.0"; sha256="1jzlpnnry9lbnfvrks5fz14nwkvg3r8pp8f5lw63izg0fx1m5ypm"; depends=[graph igraph seriation]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.20.0"; sha256="1qik5gvzvj4zzfllj5p9cryfwq8z33jziv6p5gyfndyn5b9p2sq6"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="1.24.0"; sha256="1aqw86yn9pq1901qzqjvjw9sfqpnnqn29pagdrxqd6858x034w6n"; depends=[]; }; + OCplus = derive2 { name="OCplus"; version="1.48.2"; sha256="04drljh5m46v9gpvfgwgajq9kn1ycb7fhbxxk6j4xq89ddlz1dk7"; depends=[akima multtest]; }; + OGSA = derive2 { name="OGSA"; version="1.4.0"; sha256="0i2w0g4310sg1zy4z7bc9ajr4yizf313bpzwgzjngx51hsyjk9ws"; depends=[Biobase gplots limma]; }; + OLIN = derive2 { name="OLIN"; version="1.52.0"; sha256="1q0p8jry2nw3w1a4zan0kwgc87nk2v2psnw00m5m6m0a1j9drryd"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.48.0"; sha256="168bbsacsj74ah84zbfi7h2bpnz7zclbykl9rwaic8gr4ymgz1qw"; depends=[marray OLIN tkWidgets widgetTools]; }; + OSAT = derive2 { name="OSAT"; version="1.22.0"; sha256="0f4lz86g8205hbbdka50a6s1gbdb19zqjna4gwakb4w3ni53gqhg"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.24.0"; sha256="0xxha9f2f2qfzb8cv4m59grbyv011w9f27zm3cq64affgzwnb5r2"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.12.0"; sha256="0q6ngrf5cyy6hyvhhhrx6ldbij7b051fgdsknm7qb4xzbsk5i75k"; depends=[GenomicRanges]; }; + OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.8.1"; sha256="0y38441v5lnj25w3qw5d4f6bijf3c9jzxp57jjhhj12vxqmrdajy"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; }; + OncoScore = derive2 { name="OncoScore"; version="1.2.1"; sha256="1f8nx3p8dik5b8yvpn7pvk5iy5vyy5fjgy49d3czkfwp1dzis49d"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="2.4.0"; sha256="0a1m54x14f6rz9sz9m1kwlxl8xl3vlxqz3iq5qrs8n36crqbx3nj"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr]; }; + OperaMate = derive2 { name="OperaMate"; version="1.6.0"; sha256="152qxkf4qnkjj4grk0jsysh80daybgw6ywwm1h8l6lk64q0dhl6w"; depends=[fBasics ggplot2 gProfileR gridExtra pheatmap reshape2 stabledist]; }; + OrderedList = derive2 { name="OrderedList"; version="1.46.0"; sha256="1wfpypaimvzisv032irbsmk766zxq1xqh8q0qn9ipqp9hrp7mrlb"; depends=[Biobase twilight]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.16.0"; sha256="0pj1qfz015203dkkik49i00jlvbbzh1p4lz2jgpk2iqx8n0yx923"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.4.0"; sha256="1cxmz482wlqvkcz9x3riwn01kz5flyzyg41ygs0flkjml64dp7hj"; depends=[BiocParallel cluster EBSeq testthat]; }; + OutlierD = derive2 { name="OutlierD"; version="1.38.0"; sha256="10lwi35l9iv2hx7hra43i0b6n1r853rdzcbwir4m34iijjxjx9db"; depends=[Biobase quantreg]; }; + PAA = derive2 { name="PAA"; version="1.8.0"; sha256="0kv6mxczp0mwmhyqlq2qxzzhzapl2ijmr6063aw6klsh03q1n73m"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.16.0"; sha256="0f0rl44sclmbcqfsw086nalhzxrjc04yml89xwgnjny4f5kh7sri"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; }; + PANR = derive2 { name="PANR"; version="1.20.0"; sha256="0ml99gy3fi55qqj6k9hbs5hwvf51344k0anwx30hnpk1xsxvcjy0"; depends=[igraph MASS pvclust RedeR]; }; + PAPi = derive2 { name="PAPi"; version="1.14.0"; sha256="18mnm303ryyz912m6yqnc2fbdhkin1v45jb55dxaplpzh57hmsxg"; depends=[KEGGREST svDialogs]; }; + PAnnBuilder = derive2 { name="PAnnBuilder"; version="1.38.0"; sha256="0sws413s9gy9zkaj007wbbgkk8ghh38kzr28kmpjwviga09142zr"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + PCAN = derive2 { name="PCAN"; version="1.2.1"; sha256="07yhqzvvmhldlvg7d2zg3shwlhnpm381rwrbfcrazhf2bgysd9kd"; depends=[BiocParallel]; }; + PCpheno = derive2 { name="PCpheno"; version="1.36.0"; sha256="08pxms6hs82ngjh7vcjqh7m5jchznss4i7izm37dwxp1nmy83bhy"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; }; + PECA = derive2 { name="PECA"; version="1.10.0"; sha256="1g91z0ywbm7ck9bi9a2v75hx98hvxvi1b6h8wlzv6gjjsv2z849a"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PGA = derive2 { name="PGA"; version="1.4.0"; sha256="12fwd2c7psp5ffmi7z81a33ynjg0khikccp5qjyin76bvnqxx7sw"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; }; + PGSEA = derive2 { name="PGSEA"; version="1.48.0"; sha256="0yn1ayvf6g8g3w5lakp3224qm3h2h984zii7n7cqnzl8gciwxyb4"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; }; + PICS = derive2 { name="PICS"; version="2.18.0"; sha256="1vzsrmyk4l19z0a7i9gzmrymks3jh2c8rfib6g7kn9z5pwbw56l1"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + PING = derive2 { name="PING"; version="2.18.0"; sha256="0rlx8dasj51xnj3nwvx4sjia7di9q3sawmz5zhp6a2kfacgss0lc"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.34.0"; sha256="1d2m9xxhvmgjn92dv1i8x7yzam377hzj6ibb3d4rmqmbjs446cdk"; depends=[Biobase LPE MASS]; }; + PREDA = derive2 { name="PREDA"; version="1.20.0"; sha256="07477ps2whj4h0ph5kdjra4x6jlc0xyii2yp338jhgrhdnpxwjqx"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.26.0"; sha256="1ybgzw043fm0lzayq4ddqwgr6j5bd3a0r73aica5bg8hzr5x1pll"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.6.0"; sha256="15xqwbn098vv0h8f0cz8nzxb5swf83idb2gd25k1vzh4nv34vr4m"; depends=[edgeR]; }; + PROcess = derive2 { name="PROcess"; version="1.50.0"; sha256="1l0kbd0b2xarw7wc4mkvyb0ixkky7slqd3w5r41isppa4wanvvjn"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.8.0"; sha256="0rkf4w35xgkwa2mc5h65nf5kc61cv1p3xmyz0pg0cim8q50y5wsh"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.12.1"; sha256="1948cs1ygx16kj9kj1ip2l7k2za51zkknc1sm2n51zhl7ywk9dnv"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.10.0"; sha256="152vkwaabwsyrgh2hdkp63gac418k4yl1iwvli45ax6cv2mb1c81"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.2.0"; sha256="09x527v5iwhnn4gn52xlk40553lzcgfwrmrc2qn9kv791rf7k743"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.4.0"; sha256="0y3pz6sdrv0szi068w78kdpksxqa6dqjg3vy5sqdvj0y4sr0ss0w"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.14.0"; sha256="1hj9k43sb9vjryphma140g1fmqnrgj2dkcy11b0dksd9mdlldwvg"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.0.0"; sha256="01vn24q4l7rbwksbdk0srac2rr352912bmr0brdjjfh3y9v26j8p"; depends=[alluvial ape BatchQC BiocStyle corpcor dplyr DT ggplot2 gtools knitr limma matrixStats MCMCpack pander phyloseq plyr rentrez reshape2 rmarkdown scales shiny tidyr XML]; }; + Pbase = derive2 { name="Pbase"; version="0.14.0"; sha256="0r42974jfylqf51i00n9b1axzmqb3kv9idj6p4dz5hq223r18x1j"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="1.4.3"; sha256="1cfly0xfd7sgiv65kmmb3899glvzzypb8za9prv569d7h6vz9yq8"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer]; }; + PhenStat = derive2 { name="PhenStat"; version="2.8.0"; sha256="1cmpkv11s55ackgdvqmhidijznnvy1xpfhqdw3h0b11vrwi17d1a"; depends=[car logistf MASS nlme nortest]; }; + Pi = derive2 { name="Pi"; version="1.2.1"; sha256="0b79qf119n3737n1bifnc3qb36jsyh4c9h76svqy1rpkh68pairi"; depends=[dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel igraph MASS Matrix randomForest ROCR scales supraHex XGR]; }; + Pigengene = derive2 { name="Pigengene"; version="1.0.0"; sha256="16s46alh0vm31crn3dzsf91k53v3j2hgn0rqzm1wvyw61y05la26"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; }; + Polyfit = derive2 { name="Polyfit"; version="1.8.0"; sha256="0r87xv86mivdgyifvp9snmxswsyvmsif4zkzp24wycypza7wr3l3"; depends=[DESeq]; }; + Prize = derive2 { name="Prize"; version="1.5.1"; sha256="11rzkwrkq329g2a6wzbk9yxbjza2qihdxk9l35fd39vmdw6ykfr5"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; }; + ProCoNA = derive2 { name="ProCoNA"; version="1.12.0"; sha256="0k7nb2cq1xn64m96wjvn5g18kbpigslcf99hyv03ib7r790h32qy"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; }; + Prostar = derive2 { name="Prostar"; version="1.6.1"; sha256="1gj9d425wxk57rf0qk8m9k9xxgmv02wbwjg1h4nl9q7c23vmxsbg"; depends=[DAPAR DAPARdata data_table DT rhandsontable shiny shinyAce shinyjs sm]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.6.0"; sha256="0hb3vrrvfx6lcfalmjxm8dmigfmi5nba0pzjfgsrzd35c8mbfc6f"; depends=[]; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.4.0"; sha256="0iwcsnv05g83plsb8wdgpa9lzp136pfl7qyp3yqik1fn62s32fj4"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; + PureCN = derive2 { name="PureCN"; version="1.2.3"; sha256="0h3w3d1dnr8ng0cg54jp02v1v6zhn8csrli9cpbszjgrn9dfxybx"; depends=[Biostrings data_table DNAcopy GenomeInfoDb GenomicRanges IRanges RColorBrewer Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + Pviz = derive2 { name="Pviz"; version="1.8.0"; sha256="1m2s37bzlxkih4c868wq3n8y3mg161laxh5p1789k3w32nlli89c"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.10.0"; sha256="0pa9r9pndk2viv7xcy961c26vx2afpc4rr7dl5zihsgb4y2az8vc"; depends=[Biobase CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QUALIFIER = derive2 { name="QUALIFIER"; version="1.18.0"; sha256="06aamgjl3bay76wdjzqfkwcmj9bwkvbrgv542zwqppv059an9wxf"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; }; + QUBIC = derive2 { name="QUBIC"; version="1.2.1"; sha256="15mqx8aqhk7hhhlingri1l27dydfv3vaqjvjmpa4lh7a0p9ac2rg"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.6.0"; sha256="0mh2rzh3cp0n0ky133iiy1zgv1q90ilqspi4l8r5d3mqi2bs056n"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.14.0"; sha256="1330vlvsfypr0pl7arawks4d80yjk2afn637ivcnbhrchkmicfdv"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.2.0"; sha256="0bnnh4p7ifj9kpx29x2scy7qshnbnwr9a2bzyi5npqss6nd68fpy"; depends=[Rcpp]; }; + R3CPET = derive2 { name="R3CPET"; version="1.6.0"; sha256="1f345ci24ff1fj5i509ar8900gf4850cc88b0h7w0wm14k76s6dk"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.24.0"; sha256="02s8rxcv1k41v2nzrpzhbh7l7hhyp94k61cic35kvbd84xs8bwvl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.2.0"; sha256="0hl5khn72nid1f9863nl8wyh98xgj2zx3yp0bf7q5ja5559kqnj7"; depends=[Biostrings]; }; + RBGL = derive2 { name="RBGL"; version="1.50.0"; sha256="1q14m8w6ih56v680kf3d9wh1qbgp7af33kz3cxafdf1vvzx9km08"; depends=[graph]; }; + RBM = derive2 { name="RBM"; version="1.6.0"; sha256="0h0qzn1hp5g167z5r5p9b445v8nqmvzg3ixyj709zh66y93nqcwx"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.34.0"; sha256="1q20v3h2zxxa5i655fdd6zyn3glga52mpq0dpmdrlx4yxb4pw3ms"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.0.2"; sha256="0rim13lnh1pc5ks33x1pa63mlrn64fmmpwy7d10ypplrvn7sq75a"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges knitr motifRG org_Hs_eg_db plotly rmarkdown rtracklayer S4Vectors topGO]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.20.0"; sha256="070j74bsjg3rq6bhi201r1vajcim8kzf99hpjcswq358q070ghbl"; depends=[]; }; + RCy3 = derive2 { name="RCy3"; version="1.5.2"; sha256="1jkjg6byb5rwny0q77xmsc2gnppxcym59rcdn5kpgvd33l7jwnbn"; depends=[graph httr RCurl RJSONIO]; }; + RCyjs = derive2 { name="RCyjs"; version="1.6.0"; sha256="1dh16hhm32hhk4nb12kw17gxpsg6513grvddialxhjzi21j2y698"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; }; + RCytoscape = derive2 { name="RCytoscape"; version="1.24.1"; sha256="1al8w3nz19abxxsnifgzb9myciacws79z2i2ffx29yvfhcsk2z7s"; depends=[BiocGenerics graph]; }; + RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.12.0"; sha256="1320ky26p0zq90qb5x2ysbzrz3ipcp04jz74r11qzivxzb1hzkrl"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.24.0"; sha256="1z0p6wi6l0lg8y4ffi5mnlm6hxlv3rx2wrlvzdqrv7pbg6vnv2m2"; depends=[MASS rgl]; }; + REDseq = derive2 { name="REDseq"; version="1.20.0"; sha256="0wfmqanrjmrnj7prxvci3m5qaw8y8qqml6jwnbjn42b7qk57l8n6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + RGSEA = derive2 { name="RGSEA"; version="1.8.0"; sha256="1fqlvshy4yp17v1cvjvgyiv23zcccrqs7l6mvapb2cs1q67bfhhx"; depends=[BiocGenerics]; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.18.0"; sha256="13r07fhas3bqmblydrc1h7r2sz1knc082iay5n8zi94x7bb5vx8b"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.2.0"; sha256="0shkmaxsdj078vk2h3n80cfmibxnz50mlr55hbi6vf3awj81iy1x"; depends=[digest graph rjson whisker]; }; + RIPSeeker = derive2 { name="RIPSeeker"; version="1.14.0"; sha256="1yvn9d4psifkipv1mp42qi5h09a5023cbf7mhw6nmyqpkcw4bwjd"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + RImmPort = derive2 { name="RImmPort"; version="1.2.0"; sha256="0pl2zd9y2skhxp1clnv0y7dyi4ib2pj5a6rbq9f0nqjcwqc251h0"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RLMM = derive2 { name="RLMM"; version="1.36.0"; sha256="0h7k448ajdpvqbq5vi0lx38sc581hv74224fi0grdrk9s56n3993"; depends=[MASS]; }; + RMassBank = derive2 { name="RMassBank"; version="2.2.1"; sha256="1jkn5y8bwic6nmcd9jhs8i5kfwmldxfylapassrmzjbfg7jil4gm"; depends=[Biobase digest MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.14.0"; sha256="1yzd5z1dbav72w1df0z93810ym09hbmghwikkv7b8y0b2blkigcy"; depends=[]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.22.0"; sha256="0nlz20hwyrycya82wdkaj962q1zpgncf4sjawiczz7wagll61rsm"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAither = derive2 { name="RNAither"; version="2.22.0"; sha256="0saq1yichxgr12wcb2d6xd5qixxisk992drza82gv31c1sq8i5vx"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; }; + RNAprobR = derive2 { name="RNAprobR"; version="1.6.0"; sha256="1j6mrih9aqcy3d9xh05aj1p3a39ivnj0k6i482ax1l4cq7gvna7x"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; }; + ROC = derive2 { name="ROC"; version="1.50.0"; sha256="0bm9vp0viyjr4xcar2b5dl0fbpy9fmnkrg0hzvhillrlh0xzzhwk"; depends=[]; }; + ROTS = derive2 { name="ROTS"; version="1.2.0"; sha256="1grfw0bxb5fv4sy9xbwa8ydppr6g77qw8q9rminjnfqdafpqkakk"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.2.0"; sha256="0lq5al7g4r58wc0byyj2a49m9dcj1llcys9hdwlns1ahzvw6d76h"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.30.0"; sha256="0dq6g94jb6zam5fb667finkdn6mavvi5dnxws4dgvjw1qrlwg7vl"; depends=[affy BiocGenerics phyloseq]; }; + RRHO = derive2 { name="RRHO"; version="1.14.0"; sha256="0iwg3hjxc9avm8mysrx0ix03ncwik0iikph9j6jgd7y7dczq3y1j"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.14.0"; sha256="123fly20prx0g8bjbgqwfwrh73xjrq4xbl45rsp9q84kgi6w07i3"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RTCA = derive2 { name="RTCA"; version="1.26.0"; sha256="07kb4zh14g2lvqyicmig29wn50i4sz8bcxg4vq74019al2xj7fsv"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.4.0"; sha256="0y8d0y043n0ragn1saz0rw5lbx6g04ara7iggn4df5w5xzg6rm08"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.4.0"; sha256="16p872nl9470f7yksdy73n5kwn4mlgsfjkndjg50z59sbbhc7h68"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; }; + RTN = derive2 { name="RTN"; version="1.12.0"; sha256="19rsyr07hq17jah063w74dck9c0yjn6s2i73afawbdjpcqzcrz1n"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; }; + RTopper = derive2 { name="RTopper"; version="1.20.0"; sha256="11vqgq594z3di5pa89irrnaiynxmi332g6d35za0glhpba3bj5bz"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.8.0"; sha256="043dmg1ggfvkn8vjaz4k9qvkjrc4ncm4p74iarh02mk0pzx5m9f9"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.6.0"; sha256="13c9l874qlikk5qi8qbfdy9q749xsknf9rl7pz46n03j74afad86"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.8.0"; sha256="1hsw0y9s2890z6vim5xjp95p3gdxcy1x2paw276rrgwbz1xda1p1"; depends=[Biobase RUVnormalizeData]; }; + RamiGO = derive2 { name="RamiGO"; version="1.20.0"; sha256="0a61368vzjljqwk3zvd92fb8h6hgr1baiww28531kqadjf83f8nr"; depends=[graph gsubfn igraph png RCurl RCytoscape]; }; + RankProd = derive2 { name="RankProd"; version="3.0.0"; sha256="02k3977y55qph3jx86q4s4dkhndfsbcqq2xgk4xn1nglr64z4azv"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="1.8.0"; sha256="1irnj6331sr6387k922x6548pk7727vwlzy15awjxcrqlzi5jmim"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; }; + Rariant = derive2 { name="Rariant"; version="1.10.0"; sha256="1sl9wxdkhac2s5sp93mavpxdmif6pkmki95xm1ci8rhms7jg66xr"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.42.0"; sha256="1plcslp68xmr0727wj9v82yyc7lf4n76ixnh6k9lnrrs1ayzz2i9"; depends=[Biobase graph rpart]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.14.0"; sha256="11sl03ljkq7hkm6ilw91bh4p2lz6iw35xn0f5fyh37i0j5nrmikh"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.16.0"; sha256="05jg13qmrg11d9gkm76d2c3drlzk5l7ld7c57f5fysakg49qbxsd"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + Rchemcpp = derive2 { name="Rchemcpp"; version="2.12.0"; sha256="140hwsb7b0cdps5vzjjv4hjcli58g1mkbapxkd8692hjd6ncvpsj"; depends=[ChemmineR Rcpp]; }; + RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.14.0"; sha256="0w4gzcml89ww8br6xqc903ygbkmzfl5xq13k4lngcbis7b7xmxpj"; depends=[flowType graph Rgraphviz sfsmisc]; }; + Rcpi = derive2 { name="Rcpi"; version="1.10.6"; sha256="0cqy9fr1dg85fwgkilyflwarqs0dp98xrx78xzysh0nckwbqj6mz"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; + Rdisop = derive2 { name="Rdisop"; version="1.34.0"; sha256="0fvwv7mm771wa86by3clbrx9sh7hflp1kmcyjj3xnbilwyyglvsg"; depends=[Rcpp RcppClassic]; }; + ReQON = derive2 { name="ReQON"; version="1.20.0"; sha256="1bg7y50zh6zd6v8pmvzdzpd51nazl7ymdx57ydc5ngai372g6s0j"; depends=[rJava Rsamtools seqbias]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.18.1"; sha256="033cq1pjd03h543abz35mz6vdcxk9ai879b2f8jxppbrmhyi3jij"; depends=[AnnotationDbi DOSE graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.20.0"; sha256="0rh42d2wskcmwx81266gb9npgl2gcfxsslz2drd74yvr19vc9wg2"; depends=[affy Biobase]; }; + RedeR = derive2 { name="RedeR"; version="1.22.0"; sha256="0si80xqv3sgyjflrc4h8sq4babcd5pqr2h87a3vbmiry9daw6q2d"; depends=[igraph pvclust RCurl XML]; }; + RefNet = derive2 { name="RefNet"; version="1.10.1"; sha256="0ssb5lhzqwgn9zahhnyk3cqbqdk0qv46819iclz2zd3na6qpkg27"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; }; + RefPlus = derive2 { name="RefPlus"; version="1.44.0"; sha256="0zai3s27xlqjjwvz4da5mq67yll4a4l8a6jyps6m9f6dw1q2c5jl"; depends=[affy affyPLM Biobase preprocessCore]; }; + Repitools = derive2 { name="Repitools"; version="1.20.0"; sha256="05y2y7v768mir3r8c53w1qm9dhpy46fqbyhwakpjaiha1h8y6gxn"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.14.0"; sha256="02q90prc115wbhk1851gsbv4xxd39xzbav9c9vck6qirbiangj5g"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.18.0"; sha256="08brd7cmhxmbv43cf3pq0282fwyxc6hmx3y5dr7filzdb0qs8ja1"; depends=[graph]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.6.0"; sha256="1vk3ng61dhi3pbia1lp3gl3mlr3i1vb2lkq83qb53i9dzz128wh9"; depends=[zlibbioc]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.4.1"; sha256="19ndx2xdvj57r9wsz9ym3ywilib18cbpm4dswzrhdgjliw73kdjs"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.38.0"; sha256="0c6h7lm6aqs7y57w2h36g4yr7wl2h9yrp60vv4128bdxgjqkv539"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.16.0"; sha256="1iix9nrn0p7vvv138qxdnz9aqcicrd97hn1sfgm8n46dcn5ghmqy"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.30.0"; sha256="00bv93d861finxi38pqbrypjiz1hsazzjrbihy4q5sfy2162xpa5"; depends=[Biobase e1071 kernlab pamr]; }; + RmiR = derive2 { name="RmiR"; version="1.30.0"; sha256="0j0h6ififbdbc4k99k0fq5pvaig4dm0gndzbglqrl2xl77ykhpyr"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; }; + RnBeads = derive2 { name="RnBeads"; version="1.6.1"; sha256="1kjxxbhm9f519sbldmklp7nizf71wq6vbnhkad23y4j05ywlywmf"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.6.0"; sha256="1lyvhkli4xdhshh53dg2xl9cyy11913zm3pnfpbfha1b0cl5w7d6"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + Rnits = derive2 { name="Rnits"; version="1.8.0"; sha256="0dna0gv4f4ws0xwx5ikaqvn9x01yzln1ihrdc5886bnwmlrxwqm7"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + Roleswitch = derive2 { name="Roleswitch"; version="1.12.0"; sha256="13db86wfzw6bixjxk77d0syzazvy11x5khij2yda5py45cc6q042"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.16.0"; sha256="14wlw9cmjr6iv6zydw4l7bfg9dicgb3zk7qfnrlqd9060kgqbfv2"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.8.0"; sha256="1h3fqmkifr2bdcql161dssfbabkn4x5wg753wbg1j9lfsgn2zp96"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="1.26.2"; sha256="118nsajgghi4cy3h0wi7777kc70a5j1fdyxv5n1dy01glix2z4qk"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="1.24.2"; sha256="14v255j1n01gl1s0d13rag6m4nmpc2gg636hy4mn505bnvqp147y"; depends=[]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.36.0"; sha256="18a6pf517an68n5bxxrnql2qzm5jmmi0k3zaqg3n6zkmfz6izm48"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.12.2"; sha256="0syx0qgipx97zsp3b8afhzamsr30835a2a99yb9wnq7b50g3v3p1"; depends=[BiocGenerics]; }; + SAGx = derive2 { name="SAGx"; version="1.48.0"; sha256="1sy7r5nnp9lq8r9217zfy8g5vzjcsh4raiwd06dk4qgshqwd091b"; depends=[Biobase multtest]; }; + SANTA = derive2 { name="SANTA"; version="2.12.0"; sha256="19xrjv25y780jlgl0fw0hlvwdnnjkr6ql769y86qnmj5ipqmgici"; depends=[igraph Matrix snow]; }; + SBMLR = derive2 { name="SBMLR"; version="1.70.0"; sha256="0g1wzx18sac73mwn1v1jgvdx8kbbc2ijrc8nq45h64hg00w66zys"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.3.18"; sha256="1nqrzwgb55353q9gf4lky55sda6vggq5rfnmfs0g66vld6ghs6ag"; depends=[cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov scater shiny WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.16.0"; sha256="04pfbmhnn6y842i7hd210qqqdkk1q2x25y34x6bnxvfvs5adg4nm"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SELEX = derive2 { name="SELEX"; version="1.6.0"; sha256="0j8jqfxynh22r1b4cb2l0chq93i8r5izf40bfbmyxcyw56hbp9y7"; depends=[Biostrings rJava]; }; + SEPA = derive2 { name="SEPA"; version="1.4.0"; sha256="0qrlirs7y6b4f86n9xzk29c1mpq32rjzmz22rl3dgqfanm0rhazy"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; }; + SGSeq = derive2 { name="SGSeq"; version="1.8.1"; sha256="13rv6dwf7bmd2asd16kg3cvpw3zfbnx4z8xh3sficzr409r4xj5v"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SICtools = derive2 { name="SICtools"; version="1.4.0"; sha256="14crfai0zy3yc74g755hvxpm0r942k6a38sgx399bybxwnlbqdd7"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.44.0"; sha256="1f37dc843ir2jy9998gmniydc8ypqnmp68f975vkyqicbzfplh83"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.6.1"; sha256="14masfdaqbsfwi1yh9cqb2cs4b47a3sy159iig5ahlbc4x9mkmvq"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMLR = derive2 { name="SIMLR"; version="1.0.1"; sha256="1r5yzjmjgv1lvw4b4863zs6h54614shp2bvic439wdaqr8pcq6dk"; depends=[Matrix]; }; + SISPA = derive2 { name="SISPA"; version="1.4.0"; sha256="1rfk3gyz5h1qz333cjim6952h01x15gl067jil6i4kislkpjlza7"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLGI = derive2 { name="SLGI"; version="1.34.0"; sha256="0080vwdh43i61xsii3kr517z24606dg1l412q0pg4z68p57cqrg1"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.40.0"; sha256="1zqdmq461mcz0ic9m5l4y12jmp5vf4b6w19icj2l18s9ndb2b12v"; depends=[]; }; + SMAP = derive2 { name="SMAP"; version="1.38.0"; sha256="0qpllwng8xgx6vfg8a6vrz2353b45xhbmv8vqx81z4b0jh1knbav"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.2.0"; sha256="1xqidcmr1p1nmmrhpdhbclxzfqcs33l1q8zpqs2qcbpx4svvjafb"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.14.0"; sha256="1qpvqxwh14iqw5w9sx366ri9h5q3fbq2cvk0brhsq9hslccb480m"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.8.0"; sha256="07ml3kwpz272q40k4qynj5farwr17lwarwclsd642s2vg0xandd6"; depends=[gdsfmt]; }; + SNPchip = derive2 { name="SNPchip"; version="2.20.0"; sha256="036k1la7ji9fgni0mgrz3bivkh2r66xzqd3q0hys4hr6bg7xrywi"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.0.0"; sha256="0cbw37jdmv9bvaclvnj3wyn4r05bbyab6gr0q5gapkzz7zvg8rj1"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.4.1"; sha256="17miqrv6v0n6nlrn8rkblqzsf6vk5gspmban8drbjc0j13fjpmli"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SPEM = derive2 { name="SPEM"; version="1.14.0"; sha256="1pik7sd9gg9hq3yapvc046cjcm6braq2q6nfbc2fv360xsm43ahm"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.26.0"; sha256="0z5d3bdzixams0nv6z3yr6c8cgymv2wzbnkvg6r1xfi86mrqh0s0"; depends=[KEGGgraph]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.0.0"; sha256="0w8082mnb8zkbkrp09hcwvn7y63y9p26slx2hvjxh07zw2h2k73c"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo]; }; + SQUADD = derive2 { name="SQUADD"; version="1.24.0"; sha256="1l7rkmqw571wjwcr2wh3d2q652jpcba2hgf8nfbhc1h7da0yz5n5"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.32.0"; sha256="168ijnvv3yhh9j5wbp5m4bqns63dhnmqm108pjdfwxjm2ya0dvra"; depends=[GEOquery graph RCurl RSQLite]; }; + SRGnet = derive2 { name="SRGnet"; version="1.0.0"; sha256="02y7w06j6qjvf49k8a4k03djahv934h4npj18hj10a4941d8ixfn"; depends=[DMwR EBcoexpress gbm gRain igraph limma MASS matrixStats pvclust RedeR]; }; + SSPA = derive2 { name="SSPA"; version="2.14.0"; sha256="0l95hws5c4gb8c1jsqpnwc3010gx9l8yi132svxa6wbms73qpfy2"; depends=[lattice limma qvalue]; }; + STAN = derive2 { name="STAN"; version="2.2.0"; sha256="0z5b22rqyk15gpqhlafq15gaa5h9cs0v1pm64j12qww41nrd6sz0"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.8.0"; sha256="1qn3gdz23a23i1mm006z1s58j8ky5ik3zy67bc6ji6yv0pqcdmah"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="1.14.0"; sha256="17mliwk1cd67bd485j5g8wp1ch8z4mvap44ikvxa4pv51jqrqvh0"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.0.0"; sha256="17f0a3h82yh9lsanq17prkrbs094bc4kgj9vy6hjk0ivlh0mb0wm"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; }; + SVM2CRM = derive2 { name="SVM2CRM"; version="1.6.0"; sha256="02k95x5ifdbnr2jwkppq94q5xbpfxvix8dnqfnjjzxni2qqgwzs3"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.4.1"; sha256="0jnryq56yjnp7blp9hiw45w03k7g7bb08frxqv98a2zz93vqrcxd"; depends=[data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.28.0"; sha256="08yyvidwzn3ijj0p339nbd94ix4f96141sa1y175cv13rfpcapdw"; depends=[]; }; + ScISI = derive2 { name="ScISI"; version="1.46.0"; sha256="0hrm72dkn8xn5ipw7q1vixybxhc5w13d1g42k6g7ds94mgm4y7lk"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; + SemDist = derive2 { name="SemDist"; version="1.8.0"; sha256="1a7f3md15a5fb9s483wz2mhhi99jhmbix9vwa44rnkd3c6xahvyz"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.14.1"; sha256="05s7iq3pbn3cpfqr5jvk4fxmvqcgray1d0yvk1j2d2fs6jmdsj97"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.14.0"; sha256="03g7pzhw7xz7iwac9d8lw1z0d5hxz982b65ydjwnfq87psssklx4"; depends=[Biobase biomaRt DESeq doParallel]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.12.0"; sha256="1y9bdprh3iw8m5mcys5w6cvi4msh5m2291mnh81gchypk4wmpcgi"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges logistf S4Vectors SeqArray stringr VariantAnnotation]; }; + ShortRead = derive2 { name="ShortRead"; version="1.32.1"; sha256="1m7lbfxs7xwcy9xs76zy5rky2mb96anvh457xfw60lh3kygwfpxc"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.6.0"; sha256="0ddq2q47g6anz3y3p25p5vp2nkr4ib3slyd1z5q86gaa6rja9zsv"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.12.0"; sha256="0cqdzpim9la30fdcn2kk1jb8yj27hx22szlmj86jadv21wrjspwz"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.12.0"; sha256="02rcz4h0agqm4xp5p6w3i7ssyjj9l52hg9rzp2pig854nmbyyhay"; depends=[Biobase limma mclust Ringo]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.10.0"; sha256="14y7ija2c1qby4gb4p9jm1dgn6d1175nlm1cwpvisi8nrri3bfzq"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.12.0"; sha256="0xawxv7a59b9w4ggn2ifgwbmxslwp9f4cvkx1mafllj8m9wg8m2q"; depends=[iPAC]; }; + SpeCond = derive2 { name="SpeCond"; version="1.28.0"; sha256="1paj6xpab9gv77fa5p6ndddsc0w9wqd59xkyvaarwka4c74i3983"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.4.8"; sha256="1nqakgccxz5112sfj89jw5mc530kxw5lspsrnhma3sb5ivv89291"; depends=[AnnotationDbi ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.14.0"; sha256="00cgvkh5g16i2kbdlhafpjwfszcki7g5ipl7lpkrvrzk3f9701h7"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.0.3"; sha256="0al6l12msrgh6hv73xhqvsqnm1yyvkv34g23dazwf52lxm3qvlkn"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; }; + Starr = derive2 { name="Starr"; version="1.30.0"; sha256="1wq7166k8incddgivrvijyzq7xd65bwl7rlqxc4c34g7fwzmh0hc"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; }; + Streamer = derive2 { name="Streamer"; version="1.20.0"; sha256="00vi6wh4gq6x5yrvqs2gxmy0nbcjdhiwxzi1v2v99ax11p69h37m"; depends=[BiocGenerics graph RBGL]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.4.0"; sha256="1kbj8sg2ik9f8d6g95wz0py62jldg01qy5rsdpg1cxw95nf7dzi3"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; }; + Sushi = derive2 { name="Sushi"; version="1.12.0"; sha256="05cl27h76kvxvsbc70gkma3rv9xnavg9iqm7wncardc2b8jprsk1"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="1.2.0"; sha256="0r7cmiqmp8pkzzr3hbp8k2wk4gzikxp46bxz90dbxaxhasl0b8i0"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SwimR = derive2 { name="SwimR"; version="1.12.0"; sha256="1mmj7sf1j5414gq5ng0s74xkx0cp93l7js0whnw5bvpp43d2f2iv"; depends=[gplots heatmap_plus R2HTML signal]; }; + TCC = derive2 { name="TCC"; version="1.14.0"; sha256="09kyj1wfpkc0iphd5iml3nh2mxr3dkzs52bbqsn259pc82p8bhxb"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.2.10"; sha256="0cmv0ca3y3nc15na55j4684c2q2g2z64cpfnlxkxkgmd4djkxxwv"; depends=[affy Biobase biomaRt c3net circlize clusterProfiler ComplexHeatmap ConsensusClusterPlus data_table dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicRanges ggplot2 ggrepel ggthemes gplots gridExtra httr igraph IRanges jsonlite knitr limma matlab minet parmigene pathview plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment supraHex survival survminer tibble XML xml2 xtable]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.24.0"; sha256="06zvmrdg1rjns750w6mlx817r9fn1nkb75qd4qhcvyz6iagpdh54"; depends=[Biobase GenKern Rgraphviz]; }; + TEQC = derive2 { name="TEQC"; version="3.14.0"; sha256="0a85r0skfjqmqs25lgarghzlq3fqp6gcyi5dzm7s3kn0kin0y8cf"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.12.2"; sha256="0r3rgxprc61gmvc636bybw1hqf8li2h52ch54c4jp3ach0bmyjcf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TIN = derive2 { name="TIN"; version="1.6.0"; sha256="18y6786wdpq9q4cvxqw0fs01hckgfhqhglpz8sb1hh044i6i00n0"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TPP = derive2 { name="TPP"; version="3.0.3"; sha256="1l0qyjwqcn5hj1820pmxfrfb0c0i226jdpbamx4kmszy5rc3b5yv"; depends=[Biobase doParallel dplyr foreach ggplot2 gridExtra knitr limma magrittr MASS nls2 openxlsx plyr RColorBrewer RCurl reshape2 rmarkdown sme tidyr VennDiagram VGAM]; }; + TRONCO = derive2 { name="TRONCO"; version="2.6.1"; sha256="1hwyac9jrivcl4h4k5fv54ywlf2aicd4hkr44v0mz5wgbdy1glgg"; depends=[bnlearn cgdsr circlize doParallel foreach gRapHD gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.12.0"; sha256="0zcmm7rwhc85fb5b271mdlynplsh0qdbyaw6h6fnwl8w1rdxfa6d"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; }; + TSSi = derive2 { name="TSSi"; version="1.20.0"; sha256="0f7xpd4lmv13297klvrskmiwszxl0i980vvg8ba5k9kd60qjk811"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; }; + TVTB = derive2 { name="TVTB"; version="1.0.2"; sha256="1v3vcyh8sqv7bn06zzndppdpb8vvwm6jgsv0xz9yfx2lnasgbw3v"; depends=[BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges ggplot2 IRanges reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.4.1"; sha256="1x57wd2cdfw1qrsqqm6v4flzwzkq1rkq58k214nqmi602sv66nlf"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetScore = derive2 { name="TargetScore"; version="1.12.0"; sha256="0mj25y82nvlk5sk9d2dh0p96i2bzrh0xl3cjsyxz0r7n2vyzlrl2"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.30.0"; sha256="1z7sf0qmq3fcpf9h569f4qd4647p1rl4372w9ch8ykyjc8md7gs0"; depends=[ncdf4]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.12.0"; sha256="1bi6gx9k3f13zjq1pp79ixzalvql5bjlmb8fb5schghb99yx82m5"; depends=[foreach GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + ToPASeq = derive2 { name="ToPASeq"; version="1.8.0"; sha256="1b65f3jak7yqlfwwzcld41s40x0p1cfyc2lklvc9ngz8g12hql8z"; depends=[AnnotationDbi Biobase clipper DESeq DESeq2 doParallel edgeR fields graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz SummarizedExperiment TeachingDemos]; }; + TransView = derive2 { name="TransView"; version="1.18.0"; sha256="0hnk5msxpb8734djy07cgkgcf4wkkfcdcvg14a44drxdiahsijyk"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.22.0"; sha256="06bs841mfspzsjhh61p25apwmn0qnakbxgj1l142i9bv3z7v69cc"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.40.0"; sha256="108q2bxmqf4mshc5ixbf1v55099lzsprwii5qs0y9y2n8x5ra0h2"; depends=[]; }; + UNDO = derive2 { name="UNDO"; version="1.16.0"; sha256="0pmdb7gkf7g2b45j5hiksppn75ja3r2nm71qr4a2841diz93fsri"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.14.0"; sha256="10m7qzcvhqvqskhrnxbbk2kx4fpq8dn9k2p8l665ds65ixv8xn9x"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="1.2.0"; sha256="19pcbl37khg4m7h4amzzc28xpm5izg8nn998b42pjvibxg6x14hb"; depends=[DBI R_utils RSQLite stringr WriteXLS]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.36.0"; sha256="00nf5zxjv5409qj79jh1mhidsgkxjk5piysadv2ak8xwpj9zznws"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.20.3"; sha256="10v8apgfw57nd4dxmdxdrijxpw135jpp2p8wrk3wjpb3hhfjp1qj"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.10.1"; sha256="0dy97x77v5ray8d5iw5brs15h4r9l6kizqvziccc47jxxsxl103i"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.16.0"; sha256="13i481iiv3vi1m1lwi2s1vjaaplb4y1l7blmyvpqbpa87ync5crl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + Vega = derive2 { name="Vega"; version="1.22.0"; sha256="11a8fz2fb2zyn6fgfa9hs5i4hsswp1hdxhahm41f4spn7acglmj7"; depends=[]; }; + VegaMC = derive2 { name="VegaMC"; version="3.12.0"; sha256="1swjak8yg33ykrfa52jiq7v3rcgwzf1w664j6wifi5bcflgbjhg1"; depends=[Biobase biomaRt genoset]; }; + XBSeq = derive2 { name="XBSeq"; version="1.4.0"; sha256="0f72qyhs8rsa5d4xbpgqd7lzxmgxcvk5dwqihfw714vg8mis7p8y"; depends=[Biobase Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; }; + XDE = derive2 { name="XDE"; version="2.20.0"; sha256="11phzwfpyc4dfhhgbfn54ybz71jl2z5wyysvfv34d63lv00jj3yp"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; }; + XVector = derive2 { name="XVector"; version="0.14.1"; sha256="1j14ip4c260kdp3zcmgfa2v8ky88csa0gfdg6a1xsb64s03hdbm6"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + YAPSA = derive2 { name="YAPSA"; version="1.0.0"; sha256="104ij0pwc8bfys8by0ha99fhjgr85n9havzcsakawna3vrkj2s3b"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.22.0"; sha256="12c6y89nr4cck4fsx85bnsklpjic2fkyq550xjfjimy7a2jyx9pb"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.22.0"; sha256="0w1p7ggj9q33filrkgzqkdah6pb81d6lis3p0l4mmy254kgcc61s"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.22.0"; sha256="01c0gl0161psm8pbwwj7ny2zfgj7f1h9crzsj2hwl6240p771a51"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.22.0"; sha256="19wb5h9w7zw33hwacnj1y2ylg3ksh1w4vg0mhpgnmrj79zn26wqz"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.22.0"; sha256="1wxf2yp52y63mr3jdsk7x1ah2xm39gwj0sz3fmp42bb1nrga57kh"; depends=[AnnotationDbi]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.22.0"; sha256="0s57kfn9ca75cqscm6lhs2hw9jxydbcyvj9fwf93ygm731q47lrq"; depends=[annaffy xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.52.0"; sha256="0spz1y4vxi262h6dmrjdimwa58vsksys0mww80lgcqnggc3inzy2"; depends=[Biobase cluster multtest survival]; }; + acde = derive2 { name="acde"; version="1.4.0"; sha256="1rabc0d7fnjw52i6qa4r27ch95jal7kyxmsn1iqfy8mcy8w0dqi4"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.44.0"; sha256="0hk5wzssmfaz4vc4hm9xb3j3y285pvcpavcsvas6z68143j39cws"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; }; + affxparser = derive2 { name="affxparser"; version="1.46.0"; sha256="0byfdrrsd3nbs4qdnxcyzb0xd244nnbs5y0h8h6km3fnc2cibghx"; depends=[]; }; + affy = derive2 { name="affy"; version="1.52.0"; sha256="1snq71ligf0wvaxa6zfrl13ydw0zfhspmhdyfk8q3ba3np4cz344"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.32.0"; sha256="0b3bmqnrk9mzl8ap7rabfq9mlfqi9x80721qbc99hycxywdb9cfj"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.26.0"; sha256="19iw1aaqw7a9snhyg00ldj5h2j9gvb04wjl56ikvxfa83i1w2w2d"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.50.0"; sha256="02kqhjiffq52gsyaz31yz62chs2kh314ivqhwcpkr7pixhsdzhiw"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affyPara = derive2 { name="affyPara"; version="1.34.0"; sha256="0f7yrgij5mvwp66hc04lnkp628iva4wb9xs54m573hmvjdmqcjxv"; depends=[affy affyio aplpack snow vsn]; }; + affyQCReport = derive2 { name="affyQCReport"; version="1.52.0"; sha256="0sr24zaav5mqs47mv956m6qn7yjgldqmcjq3pqahb5bfbi6j3gmc"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; }; + affycomp = derive2 { name="affycomp"; version="1.50.0"; sha256="0ar8pv1k0ajx9l53cb0izarfap7wfji6rbjzwhkjzdijkr1ax3gh"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.46.5"; sha256="0c1wpqwqlcdi0sa6dbxkmscd21wni1vrnj7wmxzbf37mq6wcggpp"; depends=[affy AnnotationDbi Biobase BiocGenerics edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.44.0"; sha256="1svsl4mpk06xm505pap913x69ywks99262krag8y4ygpllj7dfyy"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.48.0"; sha256="1zd7644p3zfw1dlgv1f7d53nml2l6bxmlaa96yazd4n37bvx1k4b"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + affypdnn = derive2 { name="affypdnn"; version="1.48.0"; sha256="1fk5mvcg3w3p20mrwac972sxd1m1xza6dzd4kc9m5yzkjw7hp5p4"; depends=[affy]; }; + agilp = derive2 { name="agilp"; version="3.6.0"; sha256="00fmn774rzp291fkkfncp1pg0ryg4203pnqhpqlgp58kw7dj1fmd"; depends=[]; }; + alpine = derive2 { name="alpine"; version="1.0.0"; sha256="0gqqk0hv38f1jmlf1n78kphb2p9bsax9lv0mmd5ph5lsi0jdip7j"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + alsace = derive2 { name="alsace"; version="1.10.0"; sha256="1qikhcxs24ycap2f2wvkm27fw7r7mlzxzz18am13371igbc8rl9d"; depends=[ALS ptw]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.36.0"; sha256="1z7c2kb5c8d28i110mf6vqnhzijhyz7icjrgjab0jg1jbfm466ad"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + ampliQueso = derive2 { name="ampliQueso"; version="1.12.0"; sha256="0p0ydmz185hbzvc9rcqk45hqs3288k4zd36x0a6kk6hyjmjx0z05"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; }; + anamiR = derive2 { name="anamiR"; version="1.0.1"; sha256="0rw4dg54vqmwl76917wgw2fz71zghg0jp6gal32vm3752hg92l3s"; depends=[agricolae DBI DESeq2 gplots limma lumi RMySQL SummarizedExperiment]; }; + annaffy = derive2 { name="annaffy"; version="1.46.0"; sha256="0x0d9hhw7n8ay3d2kncl10b8q7ajb4mv8f6dpzg985cf6irm9pgb"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; }; + annmap = derive2 { name="annmap"; version="1.16.0"; sha256="1qfm2r6w10nmixzwrk52mwkldgc6g2fqzlppd84wwf6mlvxsmb4j"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.52.1"; sha256="0yymz8qxgnbybvfhqrgkd1hh9dhwxdii1yxkhr1zicjgb35xixxb"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.48.0"; sha256="095mrvw3vjr068zm04z8fdidjg3h8iijdvhdfizkfdp36a6lm3kk"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.0.3"; sha256="0m4s98sdj5i6wifnf05hb4hjr1qqrpkwjrvc13iq151v2zmzhfbn"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges org_Dm_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db readr regioneR reshape2 rtracklayer S4Vectors TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Dmelanogaster_UCSC_dm6_ensGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene TxDb_Rnorvegicus_UCSC_rn5_refGene TxDb_Rnorvegicus_UCSC_rn6_refGene]; }; + anota = derive2 { name="anota"; version="1.22.0"; sha256="0qknx73nx2v9y2d2wc57i07varii1y8cr0dvnjcvwr0bnnbi38za"; depends=[multtest qvalue]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.14.0"; sha256="1frd43dcyaad6rrm8xdhf8vc4fwqyz6kyjlgvq7bxgfkdl8j0si0"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.40.0"; sha256="09sd7jx0as0bqgga0ammqghkx8cff4rl8vs1nzhfpv5g00kzdqvh"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + aroma_light = derive2 { name="aroma.light"; version="3.4.0"; sha256="1cgad3xydmglfkqjqqxvxwxnq65m517hp1jwpw0lsfc13ip13f27"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.32.0"; sha256="1chrnjnl9yx3xjf1hk36x2xmh93hg1dnhifj8nh9c1hwgnwkkaf1"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.52.0"; sha256="0nrw7wzs73y4zcvdk96mqprpnzzcn44ys6i4cbk3hvmrqwfgrhj0"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.30.0"; sha256="0vdvf8wb8dcm2zygqn34l24d6liw3v1qc2nx9sl6wb3zyi4ly60s"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; }; + attract = derive2 { name="attract"; version="1.26.0"; sha256="0wmkydqkrpbn460wa1xsgjic9jfd0j764nn7f7fh5f5iwif1g2gj"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + bacon = derive2 { name="bacon"; version="1.2.0"; sha256="1h38yh9d6mc4jbmhnq342ba8xndfmjr9mpf5gnq7hzb7ai2gmspy"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.6.0"; sha256="02f547y31a133jxqwlq0qianjj2lrlr9kn63x9i91vsyf22mb1ya"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bamsignals = derive2 { name="bamsignals"; version="1.6.0"; sha256="1k42gvk5mgq4la1fp0in3an2zfdz69h6522jsqhmk0f6i75kg4mb"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + baySeq = derive2 { name="baySeq"; version="2.8.0"; sha256="136ll90xapsv1p6pns81kk4krgvbhsamhrych9gfb34r8p6pyplr"; depends=[abind edgeR GenomicRanges]; }; + beadarray = derive2 { name="beadarray"; version="2.24.0"; sha256="1yjpkzknvznvc3qacdf6ma1jfxkw5basir3h0ipvfm6jnd07l1g3"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.40.0"; sha256="1afy96fx6600cw92my65zds9w99y4yxyzbssr06ycfrzz3sd6xrb"; depends=[Biobase quantsmooth]; }; + betr = derive2 { name="betr"; version="1.32.0"; sha256="093lynqrfbb6iai3s2wvwmjjx8p43nb32mxghxf3ymchaq0hnbgw"; depends=[Biobase limma mvtnorm]; }; + bgafun = derive2 { name="bgafun"; version="1.36.0"; sha256="1kjrg0c686cj7ykvas7wknc3lvdlj4jvfybfwqxwnnzxrjqn350l"; depends=[ade4 made4 seqinr]; }; + bgx = derive2 { name="bgx"; version="1.40.0"; sha256="1lzcgfjqgvd0a8r7qi8hyb1l99qw7d68bqzy97sqaaqnfb773qr4"; depends=[affy Biobase gcrma]; }; + bigmelon = derive2 { name="bigmelon"; version="1.0.0"; sha256="1wj8x195gaqq3h0y62ilxsrh0xz17d0vfnbcbblg392a4c41p4j2"; depends=[Biobase gdsfmt methylumi minfi wateRmelon]; }; + bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.20.0"; sha256="0zd43xyx433s7aghs3x4963hf2pcr6q6qyx99bxrbkbdws5m9zql"; depends=[bigmemory]; }; + bioCancer = derive2 { name="bioCancer"; version="1.2.0"; sha256="1szkrk81nyxfj8agd010495l8c3iirnixmwly38lz1f16w2p494l"; depends=[AlgDesign AnnotationFuncs Biobase broom car cgdsr clusterProfiler covr curl data_tree DiagrammeR DOSE dplyr DT geNetClassifier ggdendro ggplot2 GPArotation gridExtra htmlwidgets jsonlite knitr lubridate magrittr markdown MASS org_Hs_eg_db plyr pryr psych RCurl reactome_db ReactomePA readr scales shiny shinyAce stringr tibble tidyr visNetwork wordcloud XML yaml]; }; + bioDist = derive2 { name="bioDist"; version="1.46.0"; sha256="1ark28jkh3zi0pc4a0xj9qmim38n9k919avx9ir35wxm81133g0a"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.12.1"; sha256="09sd6naqai7qiwinjwdh6fxgswcs7z9jfh5w93vg34m29i8sry36"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.6.0"; sha256="1r2v43hpk0h6cnsaxxbks4c3c1jnakrpx693px2vg04r2gl9b9pc"; depends=[Biobase broom dplyr tidyr]; }; + biocGraph = derive2 { name="biocGraph"; version="1.36.0"; sha256="1sxhb713sn32kpjin5m0rg32b7gw75d5a6b4m9gqj0p7537phkjd"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.42.0"; sha256="07rjk10b91pkriyq297w86199r2d3sfji3ggs9mq2gyalsa8y4b6"; depends=[Biobase graph RBGL RCurl RUnit XML]; }; + biomaRt = derive2 { name="biomaRt"; version="2.30.0"; sha256="1x0flcghq71784q2l02j0g4f9jkmyb14f6i307n6c59d6ji7h7x6"; depends=[AnnotationDbi RCurl XML]; }; + biomformat = derive2 { name="biomformat"; version="1.2.0"; sha256="1p768n1kw82bl2n1ifsdfvl7rxbxhgg6qg6f72nqn07x2s14rr6g"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.14.0"; sha256="111mhlfmnyz2m0n1s6f72kyd37fbs73fdcwva06p8b3v21pq4zbx"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.2.4"; sha256="0ckmmr9lsyvzarwpz49iwz2w31sjzlvp9pblaj5xkw7x2cj06i8l"; depends=[Biobase e1071 randomForest ropls]; }; + biosvd = derive2 { name="biosvd"; version="2.10.0"; sha256="1gd93p178hs9rhh1w1vgxygw997lk3asmmgajkk6mh7463z340hg"; depends=[Biobase BiocGenerics NMF]; }; + biovizBase = derive2 { name="biovizBase"; version="1.22.0"; sha256="0f3zwn0g0rc3ld8dd5sgpr14l9aff57j766h4grkiyazyyb46bnh"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + birta = derive2 { name="birta"; version="1.18.0"; sha256="101bwd0miz377ahc1v7g0rzx1m8qzgy2wmpw57bqnpfn0xawxzg3"; depends=[Biobase limma MASS]; }; + birte = derive2 { name="birte"; version="1.10.0"; sha256="1kkj41d5w70kak00564zjycrcbr8vq3fxkg5f5j710b5shms91v2"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; }; + blima = derive2 { name="blima"; version="1.8.0"; sha256="181xqsmqq1g52dvkxx7b5myj9fd1ss15x853n617fsij8sbnbarb"; depends=[beadarray Biobase BiocGenerics]; }; + bridge = derive2 { name="bridge"; version="1.38.0"; sha256="1jfyg88i8yw6nz15sn3mhg5d7ms5xmimaca57bpj2y8yzzbbmg2k"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.10.0"; sha256="0akzqcpcfsldjxyn9znyzdfczkkjpxxf9hfqzjqd3yj4x1hgnf4j"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges limma locfit matrixStats permute R_utils S4Vectors scales SummarizedExperiment]; }; + bumphunter = derive2 { name="bumphunter"; version="1.14.0"; sha256="08r5bvxnx96rv34lww0ccn1qhy98kwsdlvyp2bq21bmwqgfm5m03"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.4.0"; sha256="06zksrn6psfwfxqagf5ksqakqkpm32sls4vi8nvfpwkh69s1r7va"; depends=[bc3net igraph]; }; + canceR = derive2 { name="canceR"; version="1.6.0"; sha256="10cai1l21cjdj61rp0s6w1a03fn03dzgcz9snb76yrr24cynhrf8"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.18.0"; sha256="1zff6wz0529gc22c9bfnwa95xxadyhfbxjvr1b51w4zgms2bicfr"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.8.0"; sha256="0ckqx8i7pgmjhznpw8pggc2f1147sd7vqhw2a4f0na9mv27l74iq"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.18.0"; sha256="0ppis6agdpccjg8bwr91axy770v67al93pg50zmk1rvbfl25b9gz"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; }; + ccrepe = derive2 { name="ccrepe"; version="1.10.0"; sha256="14y97n28jqj78xscprgbnlwq4abf1vks3ipmp0w9y1yjj0jk0xl2"; depends=[infotheo]; }; + cellGrowth = derive2 { name="cellGrowth"; version="1.18.0"; sha256="1yxlcli3h35aw9nzffnpv4nby255bmlkrwcdh6rr7i04393qjpzc"; depends=[lattice locfit]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.38.0"; sha256="117g37rvi92i21mg2ifxy9dxilvgf52nz3f51jdlcgf1w5zvm3n1"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.4.0"; sha256="1aqjz3cwl34inm7bw9pspgpi15h81si8gki3015j1ib8r45n9wda"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellity = derive2 { name="cellity"; version="1.2.0"; sha256="1lzrhqs1jq8khh3gmca381kcr6szmc17ng2jxpz025isbpc9b8y2"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cghMCR = derive2 { name="cghMCR"; version="1.32.0"; sha256="1d9vygzf4dinr4xwcz7091zlyk798ph99g27dywpkqr7yijgjz8m"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + charm = derive2 { name="charm"; version="2.20.0"; sha256="14vf7jdi5hwk3rysm59kylzfajak0wqafipa8r02rij2h1354c3v"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; }; + chimera = derive2 { name="chimera"; version="1.16.0"; sha256="0j7nhardm70p2l4svdb1cyqwk3j2247q5ig7ya72az5bh3bmamb6"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + chipenrich = derive2 { name="chipenrich"; version="1.12.1"; sha256="0vqhlljikhfb3byla05s0w95n0rfyww1rjp7g6zdsf09fy79pcw7"; depends=[chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv plyr rms S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.24.0"; sha256="115ayp82rs99iaswrx45skw1i5iacgwzz5k8rzijbp5qic0554n0"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.38.0"; sha256="1cxr419sdvy5s2whcs49hda3zy5fbgzjqgj9bb651qcwk6vc5n0h"; depends=[survival]; }; + chroGPS = derive2 { name="chroGPS"; version="1.22.0"; sha256="0kq1dgik5dkhqb1as9zpwzpyhbw16c766vyn5all4frh0mpdiy0z"; depends=[Biobase changepoint cluster DPpackage GenomicRanges ICSNP MASS]; }; + chromDraw = derive2 { name="chromDraw"; version="2.4.0"; sha256="0rzrcjzwqjb40l8yc25gscl6hnxwprrv738p46kmdh3a08ghxv5v"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.2.0"; sha256="06wg345hkkpaq0m620sqgnwvk11qfkhn5yr8nyv9cbdbihqvg0if"; depends=[biomaRt GenomicRanges]; }; + cisPath = derive2 { name="cisPath"; version="1.14.0"; sha256="108d1m3d07zblij9wsz2l6bw226bvwwl8w0gq3wdxjmgyjj48jzi"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.12.0"; sha256="09bbqapri4vw9mdlch0hw6v49mxqbknrrj5q9ssyzhjhikz954sq"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; }; + cleaver = derive2 { name="cleaver"; version="1.12.0"; sha256="0dnl7ihxhl640k91div133rz9kxa43wkvfyxkyqv31winymk0fy4"; depends=[Biostrings IRanges S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.24.0"; sha256="0dqlr468awg4r1rnskzjj77c0amcq0nj1rh8j9s5ad6jvspyk1wk"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.14.0"; sha256="1qrj1l7qdkq6s8k2zq5rfkwnag0f1ivhcjcnzyszkf8nzpxz019g"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.12.0"; sha256="1j4s26l2k0msw8yza92348z8kpji0c9a1a83gjn7lazbs27arlnf"; depends=[]; }; + clst = derive2 { name="clst"; version="1.22.0"; sha256="1yilfyf6azwdc48rdvfanjl0anl275qc6p1f2agyf5nfrhacpaaz"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.22.0"; sha256="0wc7xv65dg2qi2778qlk49d3snx4ahv9km74jdysixwww2fqqqs4"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.2.2"; sha256="0pmna9q3y607d04pqyi4vkl5r7hl41cywsplpkmkwmwp8y1v2zls"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="1.0.0"; sha256="0idg0iw7lb1iqzxwpilqh7njz2yv6783nzvmnxvdnx1vj7xihdky"; depends=[ape cluster dendextend howmany limma locfdr matrixStats NMF phylobase RColorBrewer SummarizedExperiment]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="3.2.14"; sha256="0nip67hzcwc1zary2abcki4cgz32ixxkv9b8apllvz5a26scn02r"; depends=[AnnotationDbi DOSE ggplot2 GO_db GOSemSim IRanges magrittr plyr qvalue tidyr]; }; + clusterStab = derive2 { name="clusterStab"; version="1.46.0"; sha256="1h3j1qs6d5d4whmzljzjlg6favlb8r4nk2sm8sk5kjad37ywz3cm"; depends=[Biobase]; }; + cn_farms = derive2 { name="cn.farms"; version="1.22.0"; sha256="18q8v82i90sj2c19idv5czy8dvlr2qghdlj29nqn8rwh8i04ayz9"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.20.1"; sha256="0wrf4k0a2zc6ymhlr6shncw4xdpfzwzfxig7ddrrwx4brrhn1c91"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.18.0"; sha256="18i6g6hmky6r9c6vgs67kxq5vvyaldlghlbpv518awd0y135fx4x"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.18.0"; sha256="0hcyha03gyh6zp1b24h2n9nx0vkzphh2d10nvss3ryaqj9305cxd"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.6.0"; sha256="0biiz7g893l12ibqdx16zagyk124yjz41mmb8gb283rhlibf6bpm"; depends=[biomaRt colortools corrplot GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; }; + coRNAi = derive2 { name="coRNAi"; version="1.24.0"; sha256="0qa7wrsz9m34dr7dm97cqwl2bzxn8zr0fkdqyr6x1jkixxfs76p1"; depends=[cellHTS2 gplots lattice limma locfit MASS]; }; + cobindR = derive2 { name="cobindR"; version="1.12.0"; sha256="1nygdg9bipj1nwv6i1dk3mmmba7jzmf2q4wmqwf9ivgjfaskqd19"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; }; + codelink = derive2 { name="codelink"; version="1.42.0"; sha256="0kxh3qs8plqlbq38mqyzc8lqcdsh4ig5ar2s12w5z8f17flax1fh"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.8.0"; sha256="0q5w7bjaizsvzi576lpkh59j0ynjklq1h2f9sz4wssvi9xpkg7h8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.8.0"; sha256="0bc7pmxi7j6gv1irwaab1z3x350pnnarp216lhvkn799g6bard9r"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compcodeR = derive2 { name="compcodeR"; version="1.10.0"; sha256="0fzwxnf2n408k3548c3ravddd1m6vdc6212vnka5vggjhr6aapbm"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.2.0"; sha256="0fmryl0lhahh75iy1ngqvv607iz1y9a1div3wkhw22hkzwkj0r9m"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.2.0"; sha256="07l8fy2caynakkixyipym7wmnvrjdng6j3gqqy6lbsczc18l2ljm"; depends=[BH BiocParallel clue cluster colorspace diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.8.0"; sha256="0a1abk4xfzlmz87gl6iysgriy1crs7yzhr11qajbayf7qlajyk1l"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.50.0"; sha256="01cgfnlnry5p3zjnb93cwm16kqdcl2szbps4pvgs3b8myznq3c4k"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.42.0"; sha256="1k93l7sgia6p6acbzdg48pr3l7lcc6v3k4g2mgixm2r130i78s3v"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.14.0"; sha256="1hm0k2gqgsgqvald19x09pf3x37xyyjwm5f32dxivfb04n504s1v"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + cosmiq = derive2 { name="cosmiq"; version="1.8.0"; sha256="12bc7hbjww6kza2hrg2x691h3nrsx74hji93xsk14zkf5z3c17wd"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + covEB = derive2 { name="covEB"; version="1.0.0"; sha256="0sbcsf6y68n49w7zvzci3q3dmgi7vji3b3rfa4xzqzdj89zzns8z"; depends=[Biobase gsl igraph mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.0.0"; sha256="0igvcnni8in70dch50l6vx8aj66rgbaxh93y0bv86mnvmzs5avhk"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.6.0"; sha256="0yw04dsbhvg1hfhd71b76cny79r553y8gfin2jzzy6jkifzd19fq"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.20.0"; sha256="1ac8kwd43ynli6hwfz9innlpiys1vyvq0ic8garixwpv9qwayrvs"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.0.0"; sha256="1cvz483j94v2kk6fcjh22kj71zs097wghqfsdmr128za38x9vxf0"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.32.0"; sha256="1pa8879k0xdgmz5mk4lq8rhi0v9ai01bv3h1c0cq6blhvyca1rw2"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.0.1"; sha256="1fid7bl27vsj6kxkwpymkvm5b8p5xq25xk3d8x2r1k4sx10nfidl"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocInstaller data_table DT fdrtool GEOquery limma matrixStats metaMA miniUI oligo pander RColorBrewer rdrop2 shiny stringr sva]; }; + csaw = derive2 { name="csaw"; version="1.8.1"; sha256="0vq3kxwqaaxz7k710f5y3pb8jidiqp815f5h4hy174cgmj3y1sz2"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + ctc = derive2 { name="ctc"; version="1.48.0"; sha256="137087cms5rdivm1fh2m5v414lcf96sch409b3yapkl8zva99i0q"; depends=[amap]; }; + ctsGE = derive2 { name="ctsGE"; version="1.0.0"; sha256="00dmky3fggz0xq1hwwk5xk9lbk93jmym5fc0g628apq520g9h7b0"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.16.0"; sha256="1191frlhs738xcfqcw0la7jx4jhiqfnqqcaj1a8z61p0rkx2vi70"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customProDB = derive2 { name="customProDB"; version="1.14.1"; sha256="0m4gl4w7lwvz1irwbrgx4xz8ipz55h2xz85pl89jpr35cxv7gh6z"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cycle = derive2 { name="cycle"; version="1.28.0"; sha256="17azpsw3ah7ifshn0gfnfa458y70l551ix4s623d3wjbzdbk03kj"; depends=[Biobase Mfuzz]; }; + cytofkit = derive2 { name="cytofkit"; version="1.6.5"; sha256="1ml3g8p9r7azg3c31izrvkbpfss49q8ns293jqsk9470h9yl2p4m"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny vegan VGAM]; }; + dSimer = derive2 { name="dSimer"; version="1.0.0"; sha256="0a36xlq0hsn7krf23ynmny6gckv3iisisr7pp928jblh43pspr0r"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; }; + daMA = derive2 { name="daMA"; version="1.46.0"; sha256="04x1ipqa04khki98yq8qyzlwjwz3p3ra18s4qc1hkfqsgqij20bm"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.2.2"; sha256="1996n96afn074h5mkwbdi8chvswb8xc9ms6rnbb060vdzwsrfi7k"; depends=[Biostrings data_table ggplot2 Rcpp RcppParallel reshape2 ShortRead]; }; + dagLogo = derive2 { name="dagLogo"; version="1.12.0"; sha256="14swyk3vywbm09cs4ny7wrjy9q4nmpy5nis1ik18ilmifqff3xh7"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; }; + dcGSA = derive2 { name="dcGSA"; version="1.2.0"; sha256="0fz730m7agvidrq3rdkymaa9vn5ry0jj2p8bzlpzb8ab7siaqapr"; depends=[BiocParallel Matrix]; }; + ddCt = derive2 { name="ddCt"; version="1.30.0"; sha256="03j2njmx90ivd9rb2vsd4fxcciwy9q8fj48rv3z43wrq4vbkf8s8"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddgraph = derive2 { name="ddgraph"; version="1.18.0"; sha256="17rmc4fcf1vac9jw95h4nqr32jk7vpn10ddxgl0qp9zcabxd8vm6"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; }; + debrowser = derive2 { name="debrowser"; version="1.3.11"; sha256="18hc0zlw0dzhqsnjhw7grb77y3mya2hdp1g4kgkk9fah44y8xihs"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 devtools DOSE DT edgeR GenomicRanges ggplot2 ggvis gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db RColorBrewer RCurl reshape2 S4Vectors shiny shinydashboard shinyjs stringi SummarizedExperiment sva V8]; }; + deepSNV = derive2 { name="deepSNV"; version="1.20.0"; sha256="00zl9sxifx4z2ydab6fdfyaidfin0m79v603nwv1h3kac703awvs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.14.0"; sha256="1qwzfg284ac8snwc1v9lwqd2cfkzvgp1gc0baf802kdwnp94hpq5"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + derfinder = derive2 { name="derfinder"; version="1.8.5"; sha256="1snwy5q99jy5lcnrdmanclyhfsiax5gslznphzpps19hdzby045r"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.8.1"; sha256="0920kl7lsjf9hzxh304q2n4n5nscxmaiacxqbn2ql9ja7saypqag"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.8.1"; sha256="0fvyira43hknhs72s520czprgcgy4hh54pmcsd3caca2f077cxks"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="2.0.8"; sha256="1zqmfi8ha028lcwb147m4xin4zkgrg5aqh4mp0aidqv0d8p59hkp"; depends=[Biobase BiocGenerics FNN Hmisc igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother VIM]; }; + dexus = derive2 { name="dexus"; version="1.14.0"; sha256="04vihwcvb7kx1i1pws5rhk1cdnkrhh6ipi8fwz2yfizyc253hfmh"; depends=[BiocGenerics]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.56.0"; sha256="17fyvgw9izdzhh1nmd0g0ibaxsy36438dbvszf9c447h21qqr3r5"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.6.0"; sha256="1331cf5d774hsd037gvzjx8dym5m0kk2azjb17gls1fqd08y33g6"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + diffloop = derive2 { name="diffloop"; version="1.2.2"; sha256="1hkhprz6bxpd94l5648j03xxn5rj85dl4dl419pfi4n7r21gywrq"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; + diggit = derive2 { name="diggit"; version="1.6.0"; sha256="0n5slh0w1g8zdnrbqxfram5j82yy5aaw9m7h5r5ybw6hbwmjf93r"; depends=[Biobase ks viper]; }; + dks = derive2 { name="dks"; version="1.20.0"; sha256="09y7h7gw5p3rxrbwg4mq4qpp89cv6gj45idilv30jvsjyvv03a31"; depends=[cubature]; }; + domainsignatures = derive2 { name="domainsignatures"; version="1.34.0"; sha256="0sw6fyv91nrgf55g0387hghxa7gsfcqb81lmpg11ccvm8pzj7hlp"; depends=[AnnotationDbi biomaRt KEGG_db prada]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.2.0"; sha256="06zbgkyi38v80d2szfhklbnxpnl3lfqq78ha7y8zwa2l16pkpj0m"; depends=[Biobase BiocParallel digest impute mnormt sva]; }; + dualKS = derive2 { name="dualKS"; version="1.34.0"; sha256="1qh3v18gp1flryj6wzyvi20rd7gh35rvq9cyir72cj801w95rkzs"; depends=[affy Biobase]; }; + dupRadar = derive2 { name="dupRadar"; version="1.4.0"; sha256="1m0fk5aq5nx98khkahq1wwq4hs6rfnf3gi0bnyfcm0719hk70nah"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.34.0"; sha256="16nxwg53ccx128k5ih26gm9z18n6prbas7nxm5hgfl44ihl6a2w6"; depends=[Biobase marray]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.10.0"; sha256="1jjwskac47scnbs0xdxw48l2lm389gpf38rg93z6z4sri5qk9xbk"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + ecolitk = derive2 { name="ecolitk"; version="1.46.0"; sha256="1mz2qk6cf0sq2395p7snj9mjqnsh3jkcbj3hd4awc4iyj4zrcw3l"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.6.0"; sha256="02825wnwysafi06vr5vglwld52hz9dvyrsz57rxx7bfras1y60xw"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.16.5"; sha256="04vpa0a6dkkjyvvfbkmfjyaxf2ldkagi66g028qpaszd8jsk8yiv"; depends=[limma locfit]; }; + eegc = derive2 { name="eegc"; version="1.0.0"; sha256="00l7aym526p9l6iz3j72v9n2c42l70mm1nx7q653jfhbivdikh0i"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.14.1"; sha256="16s07903wq9wwirkwv4pd77kpi1rkbmlyg24bg38zlanfyqprqfq"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; }; + eisa = derive2 { name="eisa"; version="1.26.0"; sha256="0hvpk8jsh5f0b23n4bk8h238j4afw1fdkcr9l4k3m9hm4078xjj0"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.14.0"; sha256="175fj7w2zawpymsjbcqxwp82la6lb60ajp5sbz3hkr9mscb9xi19"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="1.6.2"; sha256="1hxvjplkgkibjfzrbi6whqr7czf5digh96j7ww6szdyxy86gbf3r"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + epigenomix = derive2 { name="epigenomix"; version="1.14.0"; sha256="0wp8xbqy98b9i1vwdhjg3wbsi2nfqm9vl1alzp67s92sdafa0lax"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epivizr = derive2 { name="epivizr"; version="2.4.1"; sha256="119q39cr0fawrr4a64qx4fxddwmxcav44fq4i0dip0wf7pr7wwrw"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; }; + epivizrData = derive2 { name="epivizrData"; version="1.2.0"; sha256="0vr3czsdky6f4s60jg8ddm47kf5qsk3dj76kwwbaz9ffd3sgsv0z"; depends=[Biobase epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.2.0"; sha256="0ajxc77g604m5756bx8ivv0jqfdkglh4vjc4295d1dzwml555xil"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.2.0"; sha256="0nm644hmryyn8wsgzm129nldixn6z3yqff6851c7nwifz7vkzsln"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.8.0"; sha256="09hba0gbfgq7799kd41vm4j7qsyhkfg1awi8mymqqfb9fkdladkh"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="0.6.0"; sha256="1540i8m9fr2v8n8pzf0zfjcv2gxmfd1b2fld73hkcfv2mkfiks1m"; depends=[AnnotationDbi Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 Homo_sapiens rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esetVis = derive2 { name="esetVis"; version="1.0.1"; sha256="1s56qkm0r93bl7bfsp804q5fhcqmkazwh9g5jv01v23llsd6i0b6"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.4.0"; sha256="1sjqn0l25hw8y8i0g0ba22h5z9drj7m6104dwyfl41rprrasxjps"; depends=[Biostrings plyr R_utils Rsamtools]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.20.0"; sha256="1hdhbnb318m05bhiqijnci1d0q40d0lpw5cnvsszg6jykks3axxm"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak = derive2 { name="exomePeak"; version="2.8.0"; sha256="0573n29115djdbb47dkidwrx9m9j84ajamqanq0vx8rgjrg2xljm"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; }; + explorase = derive2 { name="explorase"; version="1.38.0"; sha256="04338jfp3kf8wngm15ws3q2r6d2wc7kvzvf50nmx6dji52952807"; depends=[limma rggobi RGtk2]; }; + fCCAC = derive2 { name="fCCAC"; version="1.0.0"; sha256="0mgzk2siwwq5ajmzqv7k5w3a8zsha7vawqj3frzfmsccbaifdw9h"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.4.0"; sha256="188599kcl50k3lvdn5z1r3xy4fnipma2idacxglrfh5pxbnc0wf7"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.20.0"; sha256="14lnyc9b0h9kb0xp7miiz3znwsbdb3ar1j5qlnfl0s9syc9y0p46"; depends=[Biobase]; }; + facopy = derive2 { name="facopy"; version="1.8.0"; sha256="02z3bdsiz3crzlb038av9bsmbwq2wi3hxfdizngkcc8x2zp4gl4f"; depends=[annotate cgdsr coin data_table DOSE facopy_annot FactoMineR ggplot2 GO_db GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz S4Vectors scales]; }; + factDesign = derive2 { name="factDesign"; version="1.50.0"; sha256="0zmbnb5nf6724k6xbmn19pp2jflfr0ckl11zhms0yhhmagd17wlz"; depends=[Biobase]; }; + farms = derive2 { name="farms"; version="1.26.0"; sha256="00hxllk193v5rbmqzayv7cizlz1kpba7jpxafd2n02471ga7qjvf"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.10.0"; sha256="0aqagldg2qc8fhk6131dj4rr5yka0sr19m7pqr1pxczg6gn7yxpr"; depends=[Hmisc LiquidAssociation WGCNA]; }; + fastseg = derive2 { name="fastseg"; version="1.20.0"; sha256="1ax0c5apmixyl7daahb3wqq8m8mc6prrylgfgbnv02rx5b3ii9hn"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fdrame = derive2 { name="fdrame"; version="1.46.0"; sha256="1zc40aa32jijmvxc07sv4gp0hdw0m4rd06aslfjyb7ngsz16lik6"; depends=[]; }; + ffpe = derive2 { name="ffpe"; version="1.18.0"; sha256="0p1sdapm6394j2xknn44g1vgry1ys004q9fkgchv40yy874ym1w9"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgsea = derive2 { name="fgsea"; version="1.0.2"; sha256="1yq4s4g4xxzcpkv9dpbg29444iy38vfgwj4wgr47rjjq8njfblfx"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Rcpp]; }; + flagme = derive2 { name="flagme"; version="1.30.0"; sha256="0s6f1928fswv8fvbqrhgq6ah0j7pqpar9q5xs3nwmig3nb9x8win"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flipflop = derive2 { name="flipflop"; version="1.12.0"; sha256="1sbqdynm4wbz3ybyzdaa6scpyav9fyn0zjm817sl8gpnsnp89m5g"; depends=[GenomicRanges IRanges Matrix]; }; + flowAI = derive2 { name="flowAI"; version="1.2.10"; sha256="1hwhzzjz7hwc9751p7kvs32w0nqn3yzkbwh8v7mdpfxsx7xi5pfp"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.12.0"; sha256="1zpjgk2ppcgmhlqmknsgp0wagilgdqk8mfhjnc474yrr339dwvcs"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.10.0"; sha256="0357nin7rcapvj82c1bxmgcn6gryi8avgzqszhk264qzmlhl2kq7"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.8.0"; sha256="1fvy99wql8lszd5kcp9gms111hw8mxkmdv68jl8cya3x7b113cr5"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.12.0"; sha256="0cxaixdx1i25p0vv8b6ynjb144cz6b9lyx40d0i21iv0fxvyxb37"; depends=[graph Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.12.0"; sha256="05jnp36ar05sgy06rfd91zkjsbinag7nylz4fimkzlsfwkaya2i1"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.12.2"; sha256="1hq7wmzd2jpbr8scvi7scg2y1cf5pq562fsl14i1p4112fhj88n1"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; }; + flowCore = derive2 { name="flowCore"; version="1.40.6"; sha256="0r4plrqbmqhn7zlhr6c8zb969r41jsdb0v7vk730zc8bqhqnw5c0"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.10.0"; sha256="0q3lizif3mc057yfbxsm1b6l79ia3ls9iaalnsrlmxlbqk3rylcp"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.8.0"; sha256="0s0zd6q5fxl40wv9fmdd6g2x8ar67ian0ihn61v95z2kgcrz2ygd"; depends=[car flowCore GEOmap gplots RFOC]; }; + flowFP = derive2 { name="flowFP"; version="1.32.0"; sha256="010m41pbz2f5rcx6453x889mjwbx0rx37lcnfhrz3hsnzqnykdim"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowFit = derive2 { name="flowFit"; version="1.12.0"; sha256="1laaa4f4jbhr1ri6zakbh2wwivhq8b44xmb1yvvrjy61fqfl4d9f"; depends=[flowCore flowViz gplots kza minpack_lm]; }; + flowMap = derive2 { name="flowMap"; version="1.12.0"; sha256="0pnq4dc364dr6wjvim5dav8399k2vwq0i7zfbjq70r8hk6d59c53"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.10.0"; sha256="11r1x2aicbgj5sbyinwzniv463yrpvxlm36agmspgjnq4ir1p3m7"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.34.0"; sha256="1jqci86yi0q5qvzhj9448gvv587kgkbx79r90957bwzj6z5nlj2z"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.22.0"; sha256="07x5im2m98nszcaw4ip6l3pnd6j6nrc17amnnpxqpnbpm73hfsz6"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.18.0"; sha256="1211wcypqjwdv2w4pyzkmjg2c0yz18r5i4mdj114lbia6v1p1jza"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.0.0"; sha256="189al2wzpr1f7haihifyfzvd42sj6nk6f305ny5v9lcr4afp3538"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.22.0"; sha256="0wskj8nfi0zd7rmx0spz8l2h8xzw4qpm9qnxv7s4cq3s8spknbmp"; depends=[]; }; + flowQ = derive2 { name="flowQ"; version="1.34.0"; sha256="0ax0m6dzfhnr0n0qnhxlhq58vrxy583c9aznczldx808xf2krx8x"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; }; + flowQB = derive2 { name="flowQB"; version="2.2.0"; sha256="11kwv1nwzvpfppla5n3zsz64hljlrjblbcgd04hfzzqbck5d9c7w"; depends=[extremevalues flowCore]; }; + flowStats = derive2 { name="flowStats"; version="3.32.0"; sha256="104yp7agkvr7p8ywmrqh8xy1anrvrnnwwl34pw68bl50p7dcb5qp"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; }; + flowTrans = derive2 { name="flowTrans"; version="1.26.0"; sha256="11h6rs6844mv5wjkr9l5hlmfv2nkwzrhg80l773mx2yllzqq84vg"; depends=[flowClust flowCore flowViz]; }; + flowType = derive2 { name="flowType"; version="2.12.0"; sha256="1ghbxlfpc9l1cg54b898rh3p79dldhpza4qynyx2q3b0yc4hanil"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; }; + flowUtils = derive2 { name="flowUtils"; version="1.38.0"; sha256="0rs62hbfzgb2mva7irjmnqcccn2zp3cn1177ji6faszkzsnmmz0i"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.6.0"; sha256="1ivsyqrxg4xg67jgmn9rm9pmmr751bpfxqsgpx8m8cw8ywxbvm3m"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.38.0"; sha256="1jrn6j2i1i6hiw4xc7s271rixz1qi4nr9awyx1dv48fnp5bhz2dd"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="3.20.5"; sha256="17yd6hhlmagpasp3cksza1v8g62kkl1nw8rh0jif8sxz6hlsh7jd"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz scales stringr XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.8.0"; sha256="0mzjva3vyf7xcgcr62aiy547p2ga9kv2543bwjd3f7y6ankz7cnn"; depends=[abind BiocParallel colorRamps EBImage rgl]; }; + fmcsR = derive2 { name="fmcsR"; version="1.16.0"; sha256="05k8c8vhdq6lqgrmc8r7dqwixindwpn32hp2a52vkqny8gn9fvbg"; depends=[BiocGenerics ChemmineR RUnit]; }; + focalCall = derive2 { name="focalCall"; version="1.8.0"; sha256="088453sxnlz76iz6fkardi3pb3z033pi4x9na6gn85sxpa53byqf"; depends=[CGHcall]; }; + frma = derive2 { name="frma"; version="1.26.0"; sha256="1q6hfmdh1m9nifz593i70x58q877lkyx55yigw095f2pgr7ikqg5"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.26.0"; sha256="1vjdci710y9zzbnhfc1yp48bzvnzp2lrl6q6gqxc64m4xh4s0fs0"; depends=[affy Biobase DBI preprocessCore]; }; + gCMAP = derive2 { name="gCMAP"; version="1.18.0"; sha256="1s4zdhwxpwv8ddp3914syrbmpfhryvaq2lqiyal4nhhp5nklbmlj"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; }; + gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.14.0"; sha256="1wdfj1qf8d80qxj17ji863gripdxdzcldfw5s6z7jblirabsxp7j"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="1.0.0"; sha256="1zqxj566hzmd1yfjrc0nfvd1djsf2vpj1jcx25c85ssssbh3if2f"; depends=[Biobase BiocParallel ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; }; + gQTLBase = derive2 { name="gQTLBase"; version="1.6.0"; sha256="07fas0d1ybpk9h8qf4hdhnh0gq9ip9xc4hfaxsdnk65xy2p4dvhc"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; }; + gQTLstats = derive2 { name="gQTLstats"; version="1.6.0"; sha256="0lpnn8992dy7bavsyym3m361sgyra54p8wz0xg25f0d4dw5bg4sq"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggplot2 gQTLBase IRanges limma mgcv reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + gaga = derive2 { name="gaga"; version="2.20.0"; sha256="1jnbmirwxnwdyvx76gqrz4y8rx5g9llnnbz06sqjkigprians1lw"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.24.0"; sha256="05kdc8pqjwhi9pl0pwm4rkisrdlkkrhnj0iwwya5vakgvh3bw42d"; depends=[AnnotationDbi graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.42.0"; sha256="1a04mzcamgw1k1s0s2n9myv9mj84lrb4mvlircnmpy6a7ag5d3lb"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.18.0"; sha256="10wi2i8yqrcxjs7vp2dywrj4fqvgd3sd238bvy7kj5kvr24ajfd1"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.2.0"; sha256="09ijwqxmwq3432bkx4zi0c8h93nj3jd4jqyz5lm65hjn2slmwbfl"; depends=[]; }; + gaucho = derive2 { name="gaucho"; version="1.10.0"; sha256="13wavb2l3bdkd3yjsd9v53wfmylq7y19q70ybncyd6qr05mzqj07"; depends=[GA graph heatmap_plus png Rgraphviz]; }; + gcatest = derive2 { name="gcatest"; version="1.4.0"; sha256="0b365k1a8yrqnxrrm8iclgg06h1mcrbl6kfkj2rzsajg4ahx9gly"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.46.0"; sha256="0yr1wcf32ihjpkb4swnnf933i0sbniyjswsvx9ly4z1dv8yigjji"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.10.1"; sha256="1mn7ircm2i9bfmxprbl2rdvwazngnv1jxdxpcdknl5c66j5lhzap"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.14.0"; sha256="1z3j12y97n8bc8nc9gjfs1bbmjbbwgkwfp7g14g11p3qfhlsjyzn"; depends=[Biobase e1071 EBarrays minet]; }; + geecc = derive2 { name="geecc"; version="1.8.0"; sha256="0yhi0a2141q93dxr26wr44724yyfh9bykr7swllql036nkdpfhvv"; depends=[gplots hypergea MASS Rcpp]; }; + genArise = derive2 { name="genArise"; version="1.50.0"; sha256="1f8ic85955v866sqc02b5m2rk8agws80w2rv7g4j7kk5ssffrv0r"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.2.1"; sha256="1pcn4asxxzark6w5a188as3h5klwb6yj5varrf9lm6qdrhmdwimy"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.0.1"; sha256="15vbi1fax2jwbh5j82vv3qlzhkscwd9qm3ls51rgbir72m915x3a"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.46.0"; sha256="1ddj9w6jdbcxnzw22q8qjg6b0pydcin51h3n7l7crwa0d8wvmg6j"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.10.0"; sha256="18h5a9yb6h7lhz4yija3vx7ca8x4mvlji659kqzy7a7prm9yqi2w"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.0.0"; sha256="104mn7rgsakc89gz3phsp00ijcw99zxbyd2q96s5ikz1c4pnf6bl"; depends=[data_table dplyr rtracklayer]; }; + genefilter = derive2 { name="genefilter"; version="1.56.0"; sha256="1vzgciqd09csqcw9qync8blsv51ylrd86a65iadgyy6j26g01fwd"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; }; + genefu = derive2 { name="genefu"; version="2.6.0"; sha256="0gh6n4k1b0f57w2lb1kjwymh5x8iirvrmhqlq46yybfs4928h147"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.0.0"; sha256="0sxvdnw4kdr2bikibhaf538qq5adr2cv4warbpmi28wjiyzs7jy1"; depends=[ape snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.52.0"; sha256="1p6yvxi243irhjxwm97hp73abhwampj0myyf8z00ij166674pc7h"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.26.0"; sha256="0v0sg2h9f3dqwydfvydbpjw37xzl2yn26244nyq8rzb1g5p30l6l"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.6.0"; sha256="1m4mz7wihj8yqivwkzw68div8ybk4rjsai3ffki7xp7sh21ax03y"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rhtslib Rsamtools rtracklayer RUnit S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.30.1"; sha256="0kglh50x76b4n0r6cfjk63bja1d1mdf5m14k7n6jjg6glprys3j5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.4.0"; sha256="160279nd3iybpn6v1da9yr248fac865hg0dmxq32mbdhmp591xjy"; depends=[curl readr]; }; + genoset = derive2 { name="genoset"; version="1.30.0"; sha256="08vyiyipcnrw3r8cyk4yzynzby8gy5mn8v16s582wzc37kdj46yz"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.4.0"; sha256="057b36rjfcg45irl80c4rkiq2bkjyczdxvph6wyn6nfl657ki5k2"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.2.0"; sha256="1czigszpqrvqqyrgn8jhifqq31i7qkbm7gq2i9h9x11qr0l421p2"; depends=[Biostrings e1071 effsize ggplot2 randomForest rjags]; }; + gespeR = derive2 { name="gespeR"; version="1.6.1"; sha256="1kk0c2hvvq1rbmkagnxsx03nd9jjnh3yci92fgb3y9vqa4gfps3n"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + ggbio = derive2 { name="ggbio"; version="1.22.4"; sha256="1kjhxhhinl5h3h3yyb1miwy4kzngmdi418awvdiimrnj3412vvrg"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.2.3"; sha256="03cb9zhpchg6ymyvp3gbma35sk81a3f7x3brkriwig74vv9x1hw5"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; }; + ggtree = derive2 { name="ggtree"; version="1.6.11"; sha256="0lh6wj4bkmad2wrv6lpxz0qprhwxava6w8v0y6l3930026wj01q4"; depends=[ape ggplot2 jsonlite magrittr tidyr]; }; + girafe = derive2 { name="girafe"; version="1.26.0"; sha256="07d0j8px5zrb07agpsvhl5v1d2hdcavcqg0q57hs2jk4ysl98way"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + globalSeq = derive2 { name="globalSeq"; version="1.2.0"; sha256="1laz11w4haiq4j754krcy3hlca2rmgwgcsy4vlc89lmfrc68pfmk"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.28.0"; sha256="0vxwhk6c2sxy46v7amnsgvgq4yy77z5mifb917649r0q4n3jaaaw"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.16.0"; sha256="1afxlz1z6khc16ab62chnfzkm9y0vdfrfnmkdhrsqwr68lf3dh9d"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + goProfiles = derive2 { name="goProfiles"; version="1.36.0"; sha256="1imwqla70j643w7h25da0f0c52szqk81z4g8vwpdpriq512d9gm9"; depends=[AnnotationDbi Biobase GO_db]; }; + goTools = derive2 { name="goTools"; version="1.48.0"; sha256="171picf9ic0z1lbpmyy8dkvglq75dnpzj39yzxkkinkbyzlnfhm2"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.26.0"; sha256="1xay2ay8whwsvy10wss07svc638gg4ks1qayskplvrwxkp2kg2p8"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpls = derive2 { name="gpls"; version="1.46.0"; sha256="1y12zzkf7knc1j8xh3kqax3jzlllwb8hyfqjnxxailad3gbxwc1x"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.18.0"; sha256="1gjcgy0bw87rgh3j8pq3940l7g6zzmwnzvkrrfviizny0p8ynxgn"; depends=[gptk]; }; + graph = derive2 { name="graph"; version="1.52.0"; sha256="0g3dk5vsdp489fmyg8mifczmzgqrjlakkkr8i96dj15gghp3l135"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.20.1"; sha256="1lkknnjac5m5wvkvbz02548q16h6c5jhzhi410vr4lfzcz7v201a"; depends=[AnnotationDbi graph rappdirs]; }; + groHMM = derive2 { name="groHMM"; version="1.8.0"; sha256="0d91nyhqbi5hv3mgmr2z0g29wg2md26g0hyv5mgapmz20cd9zi4y"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gtrellis = derive2 { name="gtrellis"; version="1.6.0"; sha256="09hds0dcs7w94gl7zm5w94kxzv09dsggn8wqibhx3a0m4h515wz7"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.6.0"; sha256="11y1knppdqcnj4w0hs33g2kcpx4sy8anb2y7kjgjxrpj4wvzinz9"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.8.1"; sha256="1c4scm9z1ckmp5cdc979a44vryraqq60bzgsn329aq92r0rpd4y2"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.16.1"; sha256="0j0iip9mdvksb2y83891mplmh18ajhpi6jmgrszp2kjjh3sfwicj"; depends=[Biobase fabia]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.8.0"; sha256="0v0js3wkcw5dlg01g5xgj0m0rzxg86y9mxxw72jy6vr8j78wkzci"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.10.0"; sha256="0krgb5139fl425vyz13vyzr1kiv06nysk511h4yiif4r4ggharif"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.4.0"; sha256="0gahm81v1gcwph2xm0p3il1pc3wp28z3ik8l0c8mvwwd3kn69cdw"; depends=[fastcluster fmsb glmnet]; }; + hopach = derive2 { name="hopach"; version="2.34.0"; sha256="01rxryijz762bcf4dzha0rfmf263svy86aq7a8zxmampb39k5a62"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.16.0"; sha256="19qx0abwmn7yl7ix6wad912d3xwvmrw13idvrrfwhwj481w7b2xw"; depends=[]; }; + htSeqTools = derive2 { name="htSeqTools"; version="1.22.0"; sha256="1g0a3fmywcrsv7p2lv7r22hfvv3mbhl43yl71bp84v53r7pb95vw"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.26.0"; sha256="1jvj19fq24fpj10i2gjvrb9vmf5b4wdz5xcbifkgkbwf8pb4jcci"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.46.0"; sha256="0g0hk5ykbxa0kmpmlmrw8qvvkxk8hhh1jcvx0hcbqkjmld1sgfkg"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.18.0"; sha256="16ranqshbcfmik400gwycv37h3azhksrh1hkv9s3s8kii1aydzrq"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.18.0"; sha256="1sz6yw0n6j8gz0rwwfinckgkcrynr6zp10vlwpfkrksnpwc2qw7i"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.14.0"; sha256="1g2lf38z2j5n922k7a7q5c04jz1nncyjxy7aiic305lnjmdhh91h"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.2.0"; sha256="1yq1kp0jzf8jiwf7l8chn4lmvlzfhfwc78ivdlqydrl2xarvb725"; depends=[]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.2.0"; sha256="1nvfp09j3n689szrjlvnjhbp7bpma6b00mpkffvadcprgalb1j63"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.4.0"; sha256="1vara7v0811n6d3h9b3xwbw8hd8jlxkr7mb920m5v5l86rnd798y"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.28.0"; sha256="00scfxyklyzpmd7yqpzh1xbq9d6drngczkvhmzklvnwcwxicw6sg"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.10.0"; sha256="1qjr1d53xq4ad9d1fqx8cg0wf0br19ga1a7m7yrjmqxnjf82kfcc"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.4.0"; sha256="1zw9lqwvnmvgj2xvq6dhi7vs1lklkfpmhxf99hqbbr6km30gjq6a"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.18.0"; sha256="1m6c1ka7yx6ish9cw3kl683dp9zn3nbr4ii49b09lzjvxq6n2cbi"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iSeq = derive2 { name="iSeq"; version="1.26.0"; sha256="07ri9w8i57jigfs7zlz35k6qcin5pipv7c4w9k7nxlrm43n6s7nd"; depends=[]; }; + ibh = derive2 { name="ibh"; version="1.22.0"; sha256="0k2pncvjc8zr4xxb4yqiphc8a02hsl2r2j6mflhzs7iw61z8rq4q"; depends=[simpIntLists]; }; + idiogram = derive2 { name="idiogram"; version="1.50.0"; sha256="13jhq6bd938rsyqfl3qjzryqx9pv6z2k7bya8r0vrjrzcssnasyh"; depends=[annotate Biobase plotrix]; }; + illuminaio = derive2 { name="illuminaio"; version="0.16.0"; sha256="0ysvblxbk3hdnd70l31f2qzg3qsrpdyix395zhqjz5hmviyy91q7"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.24.0"; sha256="0c5szadgyz53r9cj14gc5r1s3wkv68pi66dlg9gnnpqyfcfpsd8y"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + immunoClust = derive2 { name="immunoClust"; version="1.6.0"; sha256="0nmgvwccfnzpfd6x6x52qgxqi56348ljpdwhylflxbd1f4szqr58"; depends=[flowCore lattice]; }; + impute = derive2 { name="impute"; version="1.48.0"; sha256="1164zvnikbjd0ybdn9xwn520rlmdjd824vmhnl83zgv3v9lzp9bm"; depends=[]; }; + intansv = derive2 { name="intansv"; version="1.12.0"; sha256="0djcb8yzrppbawp5dvf45cj8j3g9z95kifzyk3ndz48vr62ksaav"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.12.0"; sha256="1psai99wp2d4hchfm2m7bmy9hxwz0kfl1mc9xgq57k5vq8bdq7gc"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.12.0"; sha256="1gxa1sc2sk7xvxc4p74cwjkxdk3ns7igl51jg7a7086k729k3m8j"; depends=[BiocGenerics shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.22.0"; sha256="1f35l6gnvs5kz0v4d2dhq6mdpkvknhzadzka2m0jdhhpdk1vqkq3"; depends=[haplo_stats]; }; + iontree = derive2 { name="iontree"; version="1.20.0"; sha256="1kvj73vzgrszvyyb0xlvc46ba58pznsczhxj8mxd6pp2sa3pjgbh"; depends=[rJava RSQLite XML]; }; + isobar = derive2 { name="isobar"; version="1.20.0"; sha256="171a3jphxwx7n9kw77c1wng6fbv1fm5qxlwxz8n8fbnr6z4n0k2b"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.2.0"; sha256="1dgbb9nlsjbjp06wsjnzml7laqi2353xk2pwi0kqhd6yqhrkcagz"; depends=[BiocGenerics DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges plyr RColorBrewer readr reshape S4Vectors SummarizedExperiment tidyr]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.32.0"; sha256="1pkq48a8hsalfi9w1dcyzskbwzg1ba4dw5z3y11yb9fzxh9f5y7l"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.32.0"; sha256="112wv08b4c3qgfd7w3a61zi1nk2va5b7ip9ayfknvj15kzrxsy9j"; depends=[BMA leaps survival]; }; + joda = derive2 { name="joda"; version="1.22.0"; sha256="1f2a8jn9pvi1p3x9fvj78sxl5mvar0lss4zxpivqm376sz3h71hg"; depends=[bgmm RBGL]; }; + kebabs = derive2 { name="kebabs"; version="1.8.1"; sha256="086a7z992wrj73k7zrkxk9zcz37r8bbnrdqhf4b3jvd0cwck7vib"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.26.0"; sha256="0r01hz6sra2h3irjy268y24hz0yzjzcdp8wxrj5qv103fahghjk1"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kimod = derive2 { name="kimod"; version="1.2.0"; sha256="1bylbi4pwk4khhgx7ffi2sa1vqvffkmzd2c09n0pws03gpjm77ic"; depends=[Biobase cluster]; }; + lapmix = derive2 { name="lapmix"; version="1.40.0"; sha256="1mgabcribl4jgm35ypy5rkmigzsq3vxk71i2j2jsvil48fwwpmw9"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.4.0"; sha256="090f1yf30mklvq1kgqq28dsr4qy1zv4b1jp0c8m4a46115d7f57x"; depends=[Matrix snpStats]; }; + les = derive2 { name="les"; version="1.24.0"; sha256="0736ymhiq4a6aq6439nigs475x08sw3msl4jzg5g594lbs3nxklb"; depends=[boot fdrtool gplots RColorBrewer]; }; + lfa = derive2 { name="lfa"; version="1.4.0"; sha256="1awfqd3pmzkljn19fvflxp5q8ilncamcl3hx7ns7d4r9r98d9a3s"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.30.13"; sha256="1ji8kb19anwq2505zii2kzqlrnk75mk1mpz8vy4s1mckzs1cz4m0"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.50.0"; sha256="19jiqpkqcchbrsqac9l8a9zrcn37qc02586kr1n8c9fayhr91iby"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; }; + lmdme = derive2 { name="lmdme"; version="1.16.0"; sha256="033j6pz45wf9xzgjz25s9y7jyfc92srmispsy4m1apyb22gjazgs"; depends=[limma pls stemHypoxia]; }; + logicFS = derive2 { name="logicFS"; version="1.44.0"; sha256="0j7qwgxdqq2m1ffdp78xg875xi2drlv9im8mzjc9m9mxv45fmala"; depends=[LogicReg mcbiopi]; }; + logitT = derive2 { name="logitT"; version="1.32.0"; sha256="17r5zbf5lv13rcjlv6vw1qvqk7ha8gbqbcb957jvcdncjh1rrv72"; depends=[affy]; }; + lol = derive2 { name="lol"; version="1.22.0"; sha256="15q0kz4xhzj75qa3qsg2fck9w9c1s0n87dlasim35i89y56kyzki"; depends=[Matrix penalized]; }; + lpNet = derive2 { name="lpNet"; version="2.6.0"; sha256="1bfw7xp0dbx9kdg59x5jcwjwf8bjdqky6hvcpn2q4l9p6g9h72nn"; depends=[lpSolve nem]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.2.0"; sha256="142jynr4fs70zwc3plm4wcjki6sb3ampmy6wp1cxpb92jmdavc9y"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.26.4"; sha256="0k8d3xc1k53j0mlyy69j6dfkx9rkc305vnp72jk2k6b071ian1xw"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + mAPKL = derive2 { name="mAPKL"; version="1.6.0"; sha256="0664mnmw5v6ifkrq61z4b3m3rw10133awds70h7m074qdkwl89ad"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.28.0"; sha256="1r3jv0a9xn564lmszcigpqqgfhckyjwbzzmxi632wj98cn7qj4f0"; depends=[Biobase oligoClasses SNPchip]; }; + mQTL_NMR = derive2 { name="mQTL.NMR"; version="1.8.0"; sha256="1a1v2wylv14rz96qwqrshkf63ll54bx7h6g3y6d9fy1qdfgncwgq"; depends=[GenABEL MASS outliers qtl]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.44.0"; sha256="11i2ri10gwmd6c9852z24v24f7hwcj378lmzxynrxqhz7825s1jr"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.12.0"; sha256="0rf092xaw7jw1i0p57d725x4g0827yvgl29cj6qix92ssv3fjm92"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.46.0"; sha256="0i2p236ysmhvmpbs4zc1rsxgd9z2c1633kxljsnyq7wqrkf4hx7i"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.44.0"; sha256="094zbqwj97da540z03yxprdla3fbwwhcylpg3g92p4crnp7laaym"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.48.0"; sha256="1jwqq6x9nrjyl60vpnraa4n4hp3rqqr794yh6372bqjk4ini0pph"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.48.0"; sha256="1rmgyns0xvm6v7svlzbpkinc66cg0zr2h2lwsv4xnnva4zs5w8ns"; depends=[ade4 gplots RColorBrewer scatterplot3d]; }; + maftools = derive2 { name="maftools"; version="1.0.55"; sha256="1wyapzh1zzqs0v725k24wlzfwkx0ap8dd2pxaqaxbmk6pg70vn3d"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table DPpackage ggplot2 ggrepel mclust NMF RColorBrewer rjson Rsamtools VariantAnnotation wordcloud]; }; + maigesPack = derive2 { name="maigesPack"; version="1.38.0"; sha256="1g6my6nabm810q34cgrlmgdnvn93g968a7jyymgh8rs3gpj9gzgv"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.50.0"; sha256="0bkkpsq5mgnkbygp3f0rvzxnmbrbd9isfbdfgq8q4ch4hwsfba28"; depends=[affy affyio Biobase zlibbioc]; }; + manta = derive2 { name="manta"; version="1.20.0"; sha256="1gpvjmkf14jh7z5h96ixin783xaiznag1n0lp01iarz0412jvb86"; depends=[caroline edgeR Hmisc]; }; + marray = derive2 { name="marray"; version="1.52.0"; sha256="1d242pjas4vqqcgj2cb3p66n1n9va3bqph62nyg0kr95fy2y7nf7"; depends=[limma]; }; + maskBAD = derive2 { name="maskBAD"; version="1.18.0"; sha256="0y932wzga1crd0xrfjdap0pnji2fkaqfx68s016apx1x78k755ig"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.10.0"; sha256="0qnn4cpb0xa49cxaaf7a2i87m5np1hqa6wcsxslbmvvrfik8j11b"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.16.0"; sha256="1pz8k1ygi59h4x2ykmvzqnwv44nryhqwpb3i4wg2bgm04nvd1kcz"; depends=[]; }; + matter = derive2 { name="matter"; version="1.0.1"; sha256="1yh2lgv1dw4cf62iy5il095v6zsa64dhdrpzn31b8aw4p5y7g2hw"; depends=[biglm BiocGenerics irlba S4Vectors]; }; + mcaGUI = derive2 { name="mcaGUI"; version="1.22.0"; sha256="0jmsf9vdv6nzqrzgmfgqvfgar9d1ziqp1qvj85pgsi1200n91rna"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; }; + mdgsa = derive2 { name="mdgsa"; version="1.6.0"; sha256="0r1zs60922pzf7n9z1sxx7599rmq4mas0frm1931a2r9rf78dwdw"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; }; + mdqc = derive2 { name="mdqc"; version="1.36.0"; sha256="0fva73csci63xd4kp3nr2j3gllkkwfvp9dd0b581mfgkfa2p3khm"; depends=[cluster MASS]; }; + meshes = derive2 { name="meshes"; version="1.0.0"; sha256="0abqbsai946lm3dj7759q6crad3xj6919vgmnm5416sjnmfvk0v2"; depends=[AnnotationDbi DOSE GOSemSim MeSH_db]; }; + meshr = derive2 { name="meshr"; version="1.10.0"; sha256="170mpx0z9h4lxkl7b159nrbjl4vc2bdz92vfc6piwb3pmggg2r8r"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; }; + messina = derive2 { name="messina"; version="1.10.0"; sha256="1q3ikcq5pxbiahycbxgviry820p8498q2nh5wbdw5aq26cv00nak"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaArray = derive2 { name="metaArray"; version="1.52.0"; sha256="0k9msa564981i0dc6fqsrcc3kpv58jjmkibpgn93c6966rxx76j2"; depends=[Biobase MergeMaid]; }; + metaCCA = derive2 { name="metaCCA"; version="1.2.0"; sha256="1d57h6a2idc5zrr8kn851b8ny2rsy1yhalrz5lch9xzl7ly5n5jc"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.10.0"; sha256="0f09cagf82by2wzb6gsi2wapwrgdymyhg37jnfalb00v0xhzzwwq"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.14.0"; sha256="1jm79gd1wnyrcv8cj6ymiwj5g0b4r5p7l193zfh7v2y32ki0khq8"; depends=[NOISeq Rcpp snow]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.8.0"; sha256="1blxfg4ciad5rq1lxxj6i9hw1y7ljd60hqgp46hb2bdr97p4xq1r"; depends=[Biobase Formula multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.6.1"; sha256="0zynw4bmid9m4n2v2vxy1ybbxgag7dhhf3vsipvxwn9dxfn28ls2"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges matrixStats muStat R6 Rsamtools rtracklayer]; }; + metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="1.4.0"; sha256="0sfh1zm2vkkw6gy4lkl21p33h530mff190mymf5ymj31g6ql44ag"; depends=[ape Biobase Biostrings dplyr lattice lazyeval magrittr metagenomeSeq purrr RSQLite ShortRead stringr]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.16.0"; sha256="14q96wsya19zv0ag06s9sqjq9azrh81kfim88aqvw8mp0vvc8k0x"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; }; + metahdep = derive2 { name="metahdep"; version="1.32.0"; sha256="0qnimqg6zj2hq5a9ak39z3bv9da48k1191267rdbfn5rza910hwh"; depends=[]; }; + metaseqR = derive2 { name="metaseqR"; version="1.14.0"; sha256="1h5gg9dzn91si1ir2xbv8fsf9wdih8wxl01q83279x56ghf1sy8y"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; }; + methVisual = derive2 { name="methVisual"; version="1.26.0"; sha256="1dkknkr6z10i2ljfmgjb4sxn9vv46g26cf9nc7s47rbxbycjvlqw"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; }; + methyAnalysis = derive2 { name="methyAnalysis"; version="1.16.1"; sha256="0rhjn2ql3c5m6ayj5mmgs8fb348nbxdsn2717x44a7aj3zamn9py"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; }; + methylKit = derive2 { name="methylKit"; version="1.0.0"; sha256="1fxyarvz0vi4wbki70gqb1nwrmz6m7kgsvqh1am4j8m46qzv1h9a"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.12.0"; sha256="15669zficwabd3wdl3b24q3hal7d587k5lzg8s6sr3f3f9w2lyqf"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.8.0"; sha256="1mfgxz43vxksvmwywh65q5v9jlcs5a43rb9w8zvjfgpg0zg8l46l"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.20.0"; sha256="02p1wwgz7w7qvsn08mw4ffrqwsi0kkahs7sdlm6ll0r7q3z03pkk"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mgsa = derive2 { name="mgsa"; version="1.22.0"; sha256="1iwlqjs70hcgcr3m1k93xkl7xbqc9gw7k5ik9j9yhzsd7s8zxvpi"; depends=[gplots]; }; + miRLAB = derive2 { name="miRLAB"; version="1.4.0"; sha256="0lgkm4arfc37z11ilfc0wp8m4zm1dpigr01757r82ksaxc2iqv54"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.2.0"; sha256="0y4dmd6mlwyhi9k4nqfzg5x71k3x08cg0n4j0zrdqf5dby68yc3m"; depends=[AnnotationDbi DBI miRBaseVersions_db]; }; + miRNApath = derive2 { name="miRNApath"; version="1.34.0"; sha256="01yb8n3i5jkpmy5ksq8lrllaspdc6lyixz7zzndzrwrk0gibph3b"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.8.0"; sha256="0ap5c02m7j8mvvkxcw1mkxkwx7n8cslam1q4kj93pfpnn9bk2ll1"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRcomp = derive2 { name="miRcomp"; version="1.4.0"; sha256="0j07g3cvazxafvi3m0vp4rscivxydihdjkjy0fzqaxbgin2p35gj"; depends=[Biobase KernSmooth miRcompData]; }; + microRNA = derive2 { name="microRNA"; version="1.32.0"; sha256="0yyldx2icbr36m6n0kf1f156ixm0hbjnyzrw535d36sxhy1pplpb"; depends=[Biostrings]; }; + minet = derive2 { name="minet"; version="3.32.0"; sha256="1qk2xr88d7hc3ymg23byaqmnx3d2spddzwr81n48hwala8sy7apk"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.20.2"; sha256="1dj88a1mv74fp9pv3iqmvqvgvr91mwdwan6qzx0svi4gh5g5hx3n"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter data_table genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.4.0"; sha256="0iq3223i8hl7jsgbnzz748j253n6rjvxw374g5bk1p4b0n4dcj5v"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + missMethyl = derive2 { name="missMethyl"; version="1.8.0"; sha256="03wy0j8jr855kw87w7l4hd6cbk8n6iamyqnw0z2r9hf4dwd54v5v"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; }; + mitoODE = derive2 { name="mitoODE"; version="1.12.0"; sha256="0jcc4rzc64sadanwgrg48dcsk3ibwsxka53h3wiz3yf8mlzq605a"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; }; + mmnet = derive2 { name="mmnet"; version="1.12.0"; sha256="0fb9g4cizh0zf9gqwasygsc59njj6pffrmr5f0v96fmj3gvgfs1k"; depends=[Biobase flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; }; + mogsa = derive2 { name="mogsa"; version="1.8.0"; sha256="1lw39c31n1k93i9a4rdpw03s3b638yplq8xlv4n6ac4bjy14q6l6"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monocle = derive2 { name="monocle"; version="2.2.0"; sha256="05nhkk7n6pz2p5gmr3siwawcbjmhcswqs49xx16ycf7bqj2hbfn7"; depends=[Biobase BiocGenerics cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix reshape2 slam stringr VGAM]; }; + mosaics = derive2 { name="mosaics"; version="2.12.0"; sha256="01fvc0qc3fd8pjh6qjf9c1k4z0427gfx2li3jd7xp05nwyfbs68d"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + motifRG = derive2 { name="motifRG"; version="1.18.0"; sha256="1pa97aj6c5f3gx4bgriw110764dj3m9h104ddi8rv2bpy41yd98d"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; }; + motifStack = derive2 { name="motifStack"; version="1.18.0"; sha256="1h4qw89wqnl0r6drfi26h6jnvpjh5r45qc588g18rplgw3ckjmfz"; depends=[ade4 Biostrings grImport MotIV scales XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="1.4.0"; sha256="14mgwligzfwlg9asdr125wzg15j1rhg29xsv58r802q6r2prgryy"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; }; + msPurity = derive2 { name="msPurity"; version="1.0.0"; sha256="0az2g69djc9kjzj10wgl0qpyyng6a8hzwa9ppwg66yj8da09x8zl"; depends=[doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 sapa stringr]; }; + msa = derive2 { name="msa"; version="1.6.0"; sha256="0i3cx1s5gg24dyik1mclhbpiqhxakc63fiazihdxn4k0bdg8ca9p"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.12.0"; sha256="1l8clsma1rd322dfjr14klx0w5gjgn7fg21m4d4cyayyb44vsf1s"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.12.0"; sha256="12amngakmr4h3hl0nbladynn51r2zndcd0kxkm5cyhd90rrzs18i"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + multiClust = derive2 { name="multiClust"; version="1.4.0"; sha256="1g8j8ad61njs1zbc2vrwbzp4lliapamzy9bd0cyhh520b55ziy8q"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiscan = derive2 { name="multiscan"; version="1.34.0"; sha256="12ld46bm58lr95w7v7ynyhl6mw1ws9gbdr7afjdrs7ba4313qa0j"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.30.0"; sha256="0q302f3yf9v7mlq2kib7ynq015d5f94jrsk9drkp5vq0z5j0h3sw"; depends=[Biobase BiocGenerics MASS survival]; }; + muscle = derive2 { name="muscle"; version="3.16.0"; sha256="0rkv1gdbpk8sss1nlq19y7p2kba8hy3dh3bx5x1rzn9cn0qn16ig"; depends=[Biostrings]; }; + mvGST = derive2 { name="mvGST"; version="1.8.0"; sha256="19sn5rg3ny1ch5ka8agssn048wgj764cspzzj0pn3vf025qa9pbv"; depends=[annotate AnnotationDbi GO_db GOstats gProfileR graph Rgraphviz stringr topGO]; }; + mygene = derive2 { name="mygene"; version="1.10.0"; sha256="1qir3d378plqxwkz006vi00qb1zgj2m13sjcaxcclcg59fh1fh9m"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.4.0"; sha256="0xlxcs0vqlwjqiwlycfznvj8n7sm54m3y287ndijs0461qkm2xil"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.12.0"; sha256="1zn896cpfvqp1qmq5c4vcj933hb8rxwb6gkck1wqvr7393rpqy1q"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.8.1"; sha256="0ipmhg6l3pf648rdx5g2ha7l5ppd3cja6afxhdw76x8ga3633x0r"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.20.2"; sha256="0s8gd6wf20zxi8vs1bl1d75rmssgvkrgrndzxn56g8cxdnyg95hl"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo zlibbioc]; }; + nem = derive2 { name="nem"; version="2.48.0"; sha256="00x0hb1h95dh9mg3wj89l3g2fh9hdbqlisylvmlmf7dzngcyn2c3"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; }; + netbenchmark = derive2 { name="netbenchmark"; version="1.6.0"; sha256="1f27n82kzwwqcpx71rv824lj1h9723vf9cjcp1djh6d8jpx6yx3a"; depends=[c3net corpcor fdrtool GeneNet grndata Matrix minet PCIT pracma randomForest Rcpp]; }; + netbiov = derive2 { name="netbiov"; version="1.8.0"; sha256="1yz9q8s1ls6944rwbmjmk6bzg0d16sxr93sw49vlzjqg1xydfc0x"; depends=[igraph]; }; + nethet = derive2 { name="nethet"; version="1.6.0"; sha256="04kpkff1kvxq060jx1fqg5vjszipzyjlshmr23ybm40lj31nl92k"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; }; + netprioR = derive2 { name="netprioR"; version="1.0.0"; sha256="1ilpjkwnl81rv2xn2k3174jqp9jidm0fn4aajfybz0fbhzxi5r8k"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.34.0"; sha256="15gq1x7ksmr5slbbdv0cfpk5nkibpq0b6mkpda0f4rg58zq0nsb6"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; }; + networkBMA = derive2 { name="networkBMA"; version="2.12.0"; sha256="1ccs0ardxa7d6b8jlkrnrs2idbf3bg7610zwjdg3p25da1f9gpn0"; depends=[BH BMA Rcpp RcppArmadillo RcppEigen]; }; + nnNorm = derive2 { name="nnNorm"; version="2.38.0"; sha256="1mdgbmdhqc1mjhjjhx8g0x6jy4pzza13f083c7wb9hhh7mi5w5jp"; depends=[marray nnet]; }; + nondetects = derive2 { name="nondetects"; version="2.4.0"; sha256="06jraad50df9kw4sl44qs3km1ba4nfvqkkzf0ghmrs624msyl4xx"; depends=[Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.2.0"; sha256="0h9dqm1n7kmaydjxhn9m9gw2kfwr98aa3nil32x32qsx9rsf5yk0"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.0.0"; sha256="0ad2nbyngpigx7gy9nnpifjcz33bd8vkpggjl80vp5w4swj9vkrp"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.10.0"; sha256="1w4v4b53rdg4g8zw8hbcvw3z2x7i3f4kn9i68ql7f9p7ba21qr2p"; depends=[Biobase BiocGenerics GSEABase]; }; + nucleR = derive2 { name="nucleR"; version="2.6.0"; sha256="0aa2hi3pscjypys1zf1qdzzxsxkaj7myrja3932kb2vjnydk6da7"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.2.0"; sha256="0j65i9yah3v3iidrndka05rfabgah7yk2d2fg1rqkw2nkyv47shk"; depends=[IRanges S4Vectors]; }; + nudge = derive2 { name="nudge"; version="1.40.0"; sha256="0ggbj3bjxjklw6944icgjcy3mgcly6b7d5cl68yn1cyagmdfdl63"; depends=[]; }; + occugene = derive2 { name="occugene"; version="1.34.0"; sha256="0qavm0wkhaq2vlrbqwb5yr79251m9nxlv4kj3bhhkdf0azzjpxmp"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.2.0"; sha256="1bf9s0vvgvq44p37396jj7wis6isj07mips52hmq299s7r5zl6gp"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.38.0"; sha256="1lpdqyraamyqdz9dc56xpdph4sbx7fa4ngvdg407nblbqxbyyz3d"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.36.0"; sha256="0cs8hkiz1rmp17hf1zsc2g1zwq7ah7x3bxbjapwgy6s12f68x2g9"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicade4 = derive2 { name="omicade4"; version="1.14.0"; sha256="0z6fvr4qq2bi0lpprs5fwv7lg501pgq648pd9af6w0km5ij7hrcf"; depends=[ade4 made4]; }; + oneChannelGUI = derive2 { name="oneChannelGUI"; version="1.40.0"; sha256="0x1g8f2aw95yvkc2mr9998wk3xmrzraaw4zp95kp21avv196kswh"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; }; + ontoCAT = derive2 { name="ontoCAT"; version="1.26.0"; sha256="1p6kgdv9h9hd87ccbvgz8l8vkmn7j9bvmq4wjvz4si5pwjghsz4l"; depends=[rJava]; }; + openCyto = derive2 { name="openCyto"; version="1.12.1"; sha256="07nv87c578dgacld01dzvnj8sba5f6yll5d3v3754zswnl7glk4j"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + oposSOM = derive2 { name="oposSOM"; version="1.12.0"; sha256="1hfyr7sbwr9wyhan71mr8l22qkl5q5pm09n6rbbsy1z3wfd4yj9k"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; }; + oppar = derive2 { name="oppar"; version="1.2.0"; sha256="12bdfckimhrwx0zvgjm0lq320h5b6n8a8gwj50kz75fdqg7zjw0v"; depends=[Biobase GSEABase GSVA]; }; + pRoloc = derive2 { name="pRoloc"; version="1.14.6"; sha256="15g28asmk65vzrdm9cnq083vr7vcl76z2zw7j61mnlb73z1y3vqg"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class dendextend e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="1.8.2"; sha256="0zw89sdy0y1hxydkglscn3xx29yna17a83w1c73ps4q30laybl6a"; depends=[Biobase dplyr DT MSnbase pRoloc scales shiny]; }; + paircompviz = derive2 { name="paircompviz"; version="1.12.0"; sha256="0mwpgds5blylhh4ac24flzvpdp8xvky1yidmfafk002yf6pdk8i0"; depends=[Rgraphviz]; }; + pandaR = derive2 { name="pandaR"; version="1.6.0"; sha256="13fs3qa42z9bh8wfbfbfzhzq9z2rj6436caqd1flx7m4ibbww9fc"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panp = derive2 { name="panp"; version="1.44.0"; sha256="1pj9pgknfmrq8fnyk30hkn0mz1f3n6lv1dvvs7nywd8702wfyxhv"; depends=[affy Biobase]; }; + parglms = derive2 { name="parglms"; version="1.6.0"; sha256="0lqzvy0q6nlzm9k3ar70mqrvlkiw2ks2fi07bqcccmspvvkd25a6"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.32.0"; sha256="04n9ngqmdlm44bkhgwyk7a9rky7dcm8h3jy3m6nhz8lm6k6q72h3"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.42.0"; sha256="18bdli1sbb32kdza10lzf1mfd0dwlgkmbha20bjvcpd9jxxhl79z"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.4.0"; sha256="17332arpxdn9sh3lknrdnjc7dlp6qzjp0px82grkvfw9nqs0d4m3"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.12.0"; sha256="132yhr43y88kz2qaadkw3hxbrjawk76hiy0h7y72h33zmz4l5z26"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.14.0"; sha256="1nlfh2i1gj1f35z9v95yajvpp1p60z0pgjbc9xyvdg82s58ggjvd"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.8.0"; sha256="09z7w9mp2f710y5rf83gqw490axvsg6xgqq05n44r21741rblxdf"; depends=[data_table httr igraph plyr R_utils rJava rjson XML]; }; + pbcmc = derive2 { name="pbcmc"; version="1.2.2"; sha256="0p7gacnbgf65iz9h7hfyybyak595ykl4xlfv4jvz4hpigbq8alzc"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.0.0"; sha256="00zak0j907wrpr4ng6lxj4fki3lg8kgx6j8y7vxiib7dd01sw2fp"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.18.0"; sha256="1xh7dwskik3q3npwhz2jgmpadh59q04hz6rd6fpph470d98213pm"; depends=[AnnotationDbi Biostrings ellipse]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.66.0"; sha256="18mawhxw57pgpn87qha4mwki24gqja7wpqha8q496476vyap11xw"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcot2 = derive2 { name="pcot2"; version="1.42.0"; sha256="0rqkclr272ss61nlcay1wk0fy904bgw9rkryx236p7087kmjbasi"; depends=[amap Biobase]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.38.0"; sha256="1vhb37y8mfravdlvvsdnnxw3yjx6mf6x9wkj140s3bmrjyaabyxa"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pdmclass = derive2 { name="pdmclass"; version="1.46.0"; sha256="1g88p9jrhllqxjy6043gm34h1lmyqxqyvifdlxz2afrc5h0g3rs8"; depends=[Biobase fibroEset mda]; }; + pepStat = derive2 { name="pepStat"; version="1.8.0"; sha256="1r7a10dhicq2lhk3g1yqz6q5wv0a9dwsl7pvxzhds1ix980a4rm9"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.8.0"; sha256="0bgr2v9hj6lvwn2r1m5bfa20bxbk1zibysmr2cnzr8qxvlcpi354"; depends=[XML]; }; + phenoDist = derive2 { name="phenoDist"; version="1.22.0"; sha256="0945wxmf1dr6hp8pjc995nhisdnzc0rjwlpkfkw93dn10gn947w8"; depends=[e1071 imageHTS]; }; + phenoTest = derive2 { name="phenoTest"; version="1.23.1"; sha256="1nlgzzh8ddrk943vgna9ngdha60zmpn8zmbb4sxy8sya4n1z097v"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; }; + philr = derive2 { name="philr"; version="1.0.0"; sha256="0k0ck7miirmwincp1fxcmdgfbcfdvyhgpmgxv5d4nlsasr3sf9n5"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.19.1"; sha256="19vq14gqr5wwkgbp1qdvz704ilhwvdfn7m8yzfcr6xcdxxks0gad"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="1.14.5"; sha256="1y6vy7fh23mpa2r65mhygaj27zwjl9v3khkff80lsaax0cc287s7"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; }; + pickgene = derive2 { name="pickgene"; version="1.46.0"; sha256="0lcgfw8w08akrkqb74ibavav9ph5pd1daa3zbdrxkycxqxylwcmm"; depends=[MASS]; }; + pint = derive2 { name="pint"; version="1.24.0"; sha256="1q0j037z4rq7z2yd76rnspg0xarbnblbhssm338hvh84l3kyhsvj"; depends=[dmt Matrix mvtnorm]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.40.0"; sha256="1r1z4ksjjd0av85jwfvawfv4j5jkjvglf03h55zixg8iwhcgrmz1"; depends=[graph RBGL]; }; + plateCore = derive2 { name="plateCore"; version="1.32.0"; sha256="123r9qcqan3bcqpzgw34dnrf1dgl28x01clc0j4rr61zxakapbq1"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; }; + plethy = derive2 { name="plethy"; version="1.12.1"; sha256="0q8xqk123rm1sj4knljaaz97hl0pshf8m7f99kggna0hc33hgz60"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.46.0"; sha256="16g433rh7avqml7dlil8hm8a1ksmgfansck26r3hcg2ic9ys1gly"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.44.0"; sha256="0iyazrna17qc5pk4lfxqmzwhhjxpjnli8ks6v7xf8c620ydrfdlm"; depends=[affy Biobase]; }; + plrs = derive2 { name="plrs"; version="1.14.0"; sha256="084vc0570ccl1hbp3gjp6mdk1x6qzxipyzwdh76ffahafg1lyk5s"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; }; + plw = derive2 { name="plw"; version="1.34.0"; sha256="1r5b2rpzhl5xj7477saac2j1qjdrcbdd3hrsi01hfsapczggz7sl"; depends=[affy MASS]; }; + pmm = derive2 { name="pmm"; version="1.6.0"; sha256="19v4cbc6ws84pa5byxam3cgdbmdd6qm44m1x62iz9hsmbx38fsg6"; depends=[lme4]; }; + podkat = derive2 { name="podkat"; version="1.6.1"; sha256="01kk7j2kvb15803dgyszjardy2mb8hii7f2c08x5whbprajx1h06"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; }; + polyester = derive2 { name="polyester"; version="1.10.1"; sha256="1z011zvj1jzr2diznp528skhxafngk26i080fvyc9vpviabpbl3l"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + ppiStats = derive2 { name="ppiStats"; version="1.40.0"; sha256="1ymyn5gf2879gb20q9aczw056ib5c7c0lhpap6f4iyxivz9lpbhq"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; }; + pqsfinder = derive2 { name="pqsfinder"; version="1.2.3"; sha256="0d497y179r9yk43sh03vbanv1ilpp43a0zxj33fjnmm0cfc6w8cx"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + prada = derive2 { name="prada"; version="1.50.0"; sha256="1nng189vl5xykba2gahmf88sb5fx9v980bhpy419anif26hx5fdl"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; }; + prebs = derive2 { name="prebs"; version="1.14.0"; sha256="0jkvpa5dvgvdln8bzd3cf4i5ki3mpf7n9353x0ba482p1qk3ip5z"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + predictionet = derive2 { name="predictionet"; version="1.20.0"; sha256="0c988g47nw91rv62kc6rnxvmym7xxfr4gdlj339wy70w52yjf8vk"; depends=[catnet igraph MASS penalized RBGL]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.36.0"; sha256="1n8y12q7145f385gm2k3c6y3vwvin7jlb47la4mnl7mar6pq9kmp"; depends=[]; }; + proBAMr = derive2 { name="proBAMr"; version="1.8.0"; sha256="1kdaxyx0y3p4zvs589q4svb8h1xjsw2sccm3287rdj6a6wp4z5km"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proFIA = derive2 { name="proFIA"; version="1.0.10"; sha256="18ncxwzgyvq4ks2y0sqvm01fsw8xfvri9h5nm0446ailjwg64mj9"; depends=[Biobase BiocParallel FNN minpack_lm pracma xcms]; }; + procoil = derive2 { name="procoil"; version="2.2.0"; sha256="1ffjrn2fg2z48c5lrabma34zyvm75fqngndxfd4g216znyzll2dn"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.2.0"; sha256="1b1mvh6aw9k72qxjslb5qa42l70y9zz4r49kyxf48nfm8hgs2cj7"; depends=[BiocGenerics Rcpp]; }; + prot2D = derive2 { name="prot2D"; version="1.12.0"; sha256="0pdwkyqi0lplr12ayj9rrj09xhdbm7sjn821k4ilfbnxic3lldf2"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.14.0"; sha256="0xika21c4fadh4sxbn7kqjmmqpg85qxl3aynwfvl0qmk8xjpvdin"; depends=[]; }; + proteoQC = derive2 { name="proteoQC"; version="1.10.0"; sha256="0396qp0jzyz1ss3ahcxbqpxgsn1rwiy87zmrfr3wl22gs44vijrv"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; }; + psichomics = derive2 { name="psichomics"; version="1.0.8"; sha256="15v689jcc8d107cp9chzyh4bx01x5639lf474bl2ac9jlqca3mb3"; depends=[AnnotationHub data_table digest dplyr DT fastmatch highcharter httr jsonlite miscTools plyr R_utils shiny shinyBS shinyjs stringr survival Sushi XML]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.7.4"; sha256="0553fbkbfylqk7z4rw7m4sdyddgwh5qv0rgkp0crnj0cp49cmvnc"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 igraph labeling RCurl reshape2 stringr topGO]; }; + puma = derive2 { name="puma"; version="3.16.0"; sha256="0692cvv6v58dpi0phrh5zfraw090mc83cwpnqibgi3w7kigq5zl7"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.22.0"; sha256="1hhd87fh688r03l15f1m8rsaglcnqm6lzkb1lg002lzm8ghnzq81"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.14.0"; sha256="1z71i79hq8n139xpqvwz03r8arpscimy4p8ms77q7q3pcxb0rs94"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.6.0"; sha256="1iq3aw9l2r3fc0kv0pj70yh8c729rb39v51hcy1bc5syfasr7shr"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.12.0"; sha256="0s2p02j1v41hg5yrryi7lf819hhfv1wrdi58wxxff4m69qzzypzg"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.32.0"; sha256="1q7w247r2ac4nqr262mc15q54ak0zdpw6a1sl0p7hiqcj1bc60f8"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.8.3"; sha256="02isqzh92dw6xr8wjb2nigfkk5lxmywm09p5ywffx4fvjl1bvs4f"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.28.0"; sha256="0yl5q6c2yfizc9kaxdksc0zyl88xyy2i5m9qhcjkvzw71nlhihlj"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.0.3"; sha256="1r3b90ibhvrg98xji81rdfazvk7a2ib622dga7gvpqax0rs1np8i"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + quantro = derive2 { name="quantro"; version="1.8.0"; sha256="0y33mx9nvi7k2w6qzal2z0jav1c68m9rkiqx7g22rjhisg2vynvi"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.40.0"; sha256="0bxy8rj5bflk9qv672rn9yr9lmk8z5a5lakgcamisbf28s6d3qkm"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.6.1"; sha256="1npv86c0z2ka2r3w4dydf843lhx6fsyyhxx268dnpv604rm0f662"; depends=[Biobase limma lsmeans nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.6.0"; sha256="1dijh11v1kr29gnikq09pkdvm3qwmp1a406ahx9l4j6mgn8hlsfq"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.20.0"; sha256="039p2chdxcikjd58ighdd5vh6hp9mb3w169az0m9asrys4wgkps0"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.14.0"; sha256="1a3c1yk57rmmsxwfkmgjvkfh3vs7aq71h6iwcihyvp2b15xdg8wp"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.4.0"; sha256="0hh36zfmy7284528lfgf103r7f0839hxzr2z75gmsjjvr3c4q8vb"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.0.0"; sha256="0ix6j1m9bcllblwivv0i3m5mns787kpzpmx8kvb8bw4qd3lb09hq"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.22.0"; sha256="1n673zr7g27fdksikk945krc539bnyvi3awabaifc57ldzj0hz1v"; depends=[Biostrings BSgenome IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.6.0"; sha256="1q56cg6crgr95myk8pd7dmrhblcm4yl0n21dy126c0h38i6q5f5i"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rHVDM = derive2 { name="rHVDM"; version="1.40.0"; sha256="1v410qv0djpf6cd90fjaidlifxcfv3l7s925ni9q4dqk8dr8x4y3"; depends=[affy Biobase minpack_lm R2HTML]; }; + rMAT = derive2 { name="rMAT"; version="3.24.0"; sha256="1s6lq7pc5g93qvwq79va9k6b2z2z65pf5hyya9bdjrr7q6bgd6fd"; depends=[affxparser Biobase BiocGenerics IRanges]; }; + rRDP = derive2 { name="rRDP"; version="1.8.0"; sha256="1z8m3036sarciw69pqhl5ib7prilbbwx43xv597byq03n45fgawq"; depends=[Biostrings]; }; + rSFFreader = derive2 { name="rSFFreader"; version="0.22.0"; sha256="1n9rzd3lpjzjbwpx1jvb68yymkr6k01y6a2jjyf7cdpdd9mpyg8s"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; }; + rTANDEM = derive2 { name="rTANDEM"; version="1.14.2"; sha256="1c9y3lf0ksmck7zw2qm6r3mnpgrmf6gpq471bzpyx8443cs7fj7h"; depends=[data_table Rcpp XML]; }; + rTRM = derive2 { name="rTRM"; version="1.12.0"; sha256="14ma36hx7hzaz903dzbmhzmipqlr3lnibjxr5y518wsml4ih70gi"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.12.0"; sha256="0slp9yggz7yfhpil540k6d1ppkbmmbks1ssacj6xf5h4yksc6zh8"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rain = derive2 { name="rain"; version="1.8.0"; sha256="1gqkh3rjr3h6l8y3s9rdc1j4ivnpx1hmhnlp6ay63y99q4yxgj8c"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.48.0"; sha256="0zmmilwhvh51fg0bi6jid27z38xr5yyqa0xa5kjwq3xh9pnrg17l"; depends=[]; }; + randPack = derive2 { name="randPack"; version="1.20.0"; sha256="0wby3nwhj5d4r98p14qfl3p2z4rb73bbpfh68zf75gjaqvkm0j25"; depends=[Biobase]; }; + rbsurv = derive2 { name="rbsurv"; version="2.32.0"; sha256="1n067rk8jiwf56rm22h8jfngwg75hp0xg7hlx86yzsdffpkmmbbv"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="1.6.0"; sha256="1lmghcwrwdwknpsv2cq47yyaw09ishb0s7i29zs5c4ksvpmdhw5h"; depends=[Biobase fingerprint gplots rcdk rcellminerData shiny stringr]; }; + readat = derive2 { name="readat"; version="1.0.0"; sha256="0l89x1pb1c8kypdh2ka9bp9jwq8j19p34qnf2zzm34361amh90wz"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; }; + reb = derive2 { name="reb"; version="1.52.0"; sha256="1cg88gglzr5r5m0bq51fz2xabhrlk9rybvrbbdnd7ph2ss1jxkis"; depends=[Biobase idiogram]; }; + recount = derive2 { name="recount"; version="1.0.17"; sha256="1ffvpkzafqhy75j8r39l91lrm321yq73w5a929nngk82lwwd6dcf"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recoup = derive2 { name="recoup"; version="1.2.0"; sha256="1n5af8fbly8qdwn4ggysd01s15l26lkw9dh1mnmimhhi6wzz1brj"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; }; + regionReport = derive2 { name="regionReport"; version="1.8.2"; sha256="0q59fhxa9a1cr75c6m4qmgpxrv8q1jj0k1zm76xbj6anri5cmprd"; depends=[DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.6.2"; sha256="0mvwk2yjsdxda7w6f82dbj91i0zrr95ipglfyw9ndhl2ki8dka0i"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer]; }; + regsplice = derive2 { name="regsplice"; version="1.0.0"; sha256="0kl8xsz4jph4jrj3yfnfaymhsrrmcxgfjjanbc3yfv6kj5pwjfcp"; depends=[BiocParallel edgeR glmnet limma S4Vectors SummarizedExperiment]; }; + rfPred = derive2 { name="rfPred"; version="1.12.0"; sha256="1bc5rj00mlayahqb6vla9ghq15676fscj9kqagp1x6ivpgxqkl65"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rgsepd = derive2 { name="rgsepd"; version="1.6.0"; sha256="047svzia4f5qhcr6h0p0hfzshzmissdm9hg0pp4mfd6051nkdv5x"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.18.0"; sha256="0pb04li55ysag30s7rap7nnivc0rqmgsmpj43kin0rxdabfn1w0k"; depends=[zlibbioc]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.8.0"; sha256="1196qh0vwnfwshccl725mbkf698dlyz4658cq7kpvyrpv56z5l90"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.32.0"; sha256="0bxlc5lwxlnlbp2qj3gsdvbrb96c9dhmp3fjdnpdcjwbvwh9a2jn"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.4.0"; sha256="1q1lsf75nbwkn91lgwkpx4lsmg94v1lbwzq7glwai4766xkvd2nb"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.10.0"; sha256="1hp2542vi0jqxqqin6gb5py5hvl06sn0x9ks4lb371sw0smps7ak"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.2.5"; sha256="0xc467hd2jzdhw73a97lvj5m2hv10w06l11yrqff13gkhch4d6mi"; depends=[Biobase httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.6.2"; sha256="0piwi6l83a7lcgsv2561d71y7hm3j3g2ax6vq2h0izf6qrzj4nvy"; depends=[Biobase]; }; + rpx = derive2 { name="rpx"; version="1.10.2"; sha256="1814f3jdmbj2yyv8ll7lfnc6bcwbv5hn9i7wydf2xzvpi2954ijr"; depends=[RCurl XML]; }; + rqubic = derive2 { name="rqubic"; version="1.20.0"; sha256="1d5zbicb5lsqvbb0djaixi9i05q2caysa1pxnlbvf4pc3pjl2bzh"; depends=[biclust Biobase BiocGenerics]; }; + rsbml = derive2 { name="rsbml"; version="2.32.0"; sha256="13y47fkrq80c9s0y7rrvynr6y5df9cxr0i9zxksm27fvk7bq2rzh"; depends=[BiocGenerics graph]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.34.2"; sha256="1j3cyvg1wg1d9l0lkcjk3jn7pb96zi17nd1qsa5lglsimja19mpl"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; }; + sRAP = derive2 { name="sRAP"; version="1.14.0"; sha256="04nnkxb59s9qfv8kyvqc5kw8hd60c0qnpp9v8rl2iash3yng8xxb"; depends=[gplots pls qvalue ROCR WriteXLS]; }; + sSeq = derive2 { name="sSeq"; version="1.12.0"; sha256="0pawi0svlz3cfq14f81lkvfawa5vd59cbvk4nxgwpwwk1ldxrdiq"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.14.0"; sha256="1n2i36gg8iykcaxy4347il2hbjd4lzrygyzibj4l9a7xprfb05y0"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.44.0"; sha256="1j6y4bj156szbf454m4zmlcg1idzxq2vzis2vjl5awpm0jvgz6sa"; depends=[SparseM]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.10.0"; sha256="058la6zb2prgnf0vwy8fc4p7n13zpm1gr7fhsy4m9qknd4mdcvkz"; depends=[Biostrings shiny]; }; + sapFinder = derive2 { name="sapFinder"; version="1.12.0"; sha256="1fybnkzjg2jfjc4qzcr96ma75389x928110a2nmq8326xknwd6f1"; depends=[pheatmap Rcpp rTANDEM]; }; + savR = derive2 { name="savR"; version="1.12.0"; sha256="0h32mrnwls8bgq0h71vzhr29f56hpl1hgxi7sycz7hmzp9pxcfh8"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scater = derive2 { name="scater"; version="1.2.0"; sha256="0pambafir3aqpgk7kdq5i2pn0278d97bn2qb9712c0jivw363whf"; depends=[Biobase BiocGenerics biomaRt data_table dplyr edgeR ggbeeswarm ggplot2 limma matrixStats plyr reshape2 rhdf5 rjson shiny shinydashboard tximport viridis]; }; + scde = derive2 { name="scde"; version="2.2.0"; sha256="1yhg9gd8qphnfk5x93hsxqhw6mc2v6kdrw1wlgb93njic0cfmv7b"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scran = derive2 { name="scran"; version="1.2.2"; sha256="02jlxxm3nwgdx3v4dxw7041c4klfalpbqx0qwj25pk4f0fn9xrak"; depends=[Biobase BiocGenerics BiocParallel dynamicTreeCut edgeR Matrix scater shiny statmod zoo]; }; + scsR = derive2 { name="scsR"; version="1.10.0"; sha256="143qn75g3kijbdx2f7yg0wxa8kakyv6w119fwnfqxgpswdgdz2hn"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.8.0"; sha256="1azbyabm0nsjq45z3p6xhbxs01b5prwnq384y5yp5f6akkr3i4h7"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.6.0"; sha256="0rr5fzbcyc32ciyx42kahn8f9fvk7sy6055i37ql8zk5msgrsdsw"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqCNA = derive2 { name="seqCNA"; version="1.20.0"; sha256="0951qnwgh29w7ws7mjcsrrkavipjpryf0mf0z7bgnpzdlpvkf361"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.40.0"; sha256="18bajdl75h3039559d81rgllqqvnq8ygsfxfx081xphxs0v6xggy"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.6.0"; sha256="0lsa5pz36xapi3yiv78k3z286a5md5sm5g21pgfyg8zmhmkxr7y8"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.8.0"; sha256="18ld6syl85hsdzapgbh9dp2f5prprc64yr2yi5mwrlrsjpqzix00"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.22.0"; sha256="094scvmbcfamblqnc0k9daxym890lff1968xg2lfwfhc92sdnwyd"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; }; + seqplots = derive2 { name="seqplots"; version="1.12.0"; sha256="09l0sks7hzsjv8bha7ric1jhpn65ql4957lh7qg1hfd4pifyamvp"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.4.9"; sha256="1cy53v8a4bsyhf84201p5fwbyjbmr2j0c3075rj0baqxydbp4fqv"; depends=[curl docopt dplyr httr jsonlite liftr miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.10.0"; sha256="0i6gjg3kjafx7pf9jkmnka33zma2ifg7kl4m71ii4a3zafy384r7"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.12.0"; sha256="1nay7lw325v0gfgnalypyw8dl8i5nc5dwfm3x7gk3cpz2k9f1n0f"; depends=[mixtools rTANDEM shiny xtable]; }; + sigPathway = derive2 { name="sigPathway"; version="1.42.0"; sha256="0bk2gnsli8gnw70qmsic1244h0fpy10xv8i5nns70m9hh600rssc"; depends=[]; }; + sigaR = derive2 { name="sigaR"; version="1.22.0"; sha256="1akjzr8h429ag2sys8kka3adrfx1b2145ag7anxyl125h2dfqh97"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; }; + siggenes = derive2 { name="siggenes"; version="1.48.0"; sha256="1djhghhh4rgjwrfprj376zy77pw1h52j4g5v3jz58xy47a346ila"; depends=[Biobase multtest]; }; + sights = derive2 { name="sights"; version="1.0.0"; sha256="0j5gcpmv6g1b29a93sgmlrzvypfflk035rhbz578cl5ps9iqgbxy"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signeR = derive2 { name="signeR"; version="1.0.1"; sha256="05mqk99c8clv1vak4f1w6q928g49lfmlmlq4v46yfrqjkrq1acll"; depends=[BiocGenerics Biostrings BSgenome class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; }; + sigsquared = derive2 { name="sigsquared"; version="1.6.0"; sha256="12dqrf4ffcaigrrk9rl7d66m7fk1fiinmqrjffl80viyknjvz710"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.6.0"; sha256="11apli0ak9givkw2r9185ckkn7zp7sjq01fvhpv3szlpli5kczkm"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; }; + simpleaffy = derive2 { name="simpleaffy"; version="2.50.0"; sha256="1gv6843dy1dzli1cvg5pl39kk8kg0cbcj4qcz4kc20n6zq6dx88q"; depends=[affy Biobase BiocGenerics gcrma genefilter]; }; + simulatorZ = derive2 { name="simulatorZ"; version="1.8.0"; sha256="0kw54dw4sfyxns3b78n116rxxl7yfqlaslbvmiksbqj1a2gnsifk"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; }; + sincell = derive2 { name="sincell"; version="1.6.0"; sha256="0hpzrigp6hppamffv0l9fn3xn187dyfbwx91az7hav04lc4slymv"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + sizepower = derive2 { name="sizepower"; version="1.44.0"; sha256="0f8gaj0l47pcamml9wbzfrrv51cpclj91cqig6pyigjwqcxahi29"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.6.0"; sha256="1xk7vf8m90bshk3179ndis672rnvvl15p00dsfh9y4kvxz2skr4q"; depends=[IlluminaHumanMethylation450kmanifest IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; }; + snapCGH = derive2 { name="snapCGH"; version="1.44.0"; sha256="02dkhid7cz9lxffpnrh5d88iyvv6g23yrr14w3vpa189l6n8qvff"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snm = derive2 { name="snm"; version="1.22.0"; sha256="01rwb8z9wbf4zw5kh7mnxj9add4r1a3fldvb5n0rir0wyr6snqg5"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.24.0"; sha256="1hkgjd12cz6rfm7w51dgc7cxvrsrqgc2byfinbp0d42rnc3600n2"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.6.1"; sha256="03bdclygsbvahgx6klmmp3bzcq70kjicrwxjbc6gmpi9gqsyf6nd"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + specL = derive2 { name="specL"; version="1.8.0"; sha256="07yp81v8ypbysfj881j97cl0qwsxy0yryyzr07by382iys9hdy4c"; depends=[DBI protViz Rcpp RSQLite seqinr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.34.0"; sha256="1qaqf4f8vpnrdriz6pplbzjl2vjfhwqgrm528p3m9w48d3s1ccyy"; depends=[]; }; + spkTools = derive2 { name="spkTools"; version="1.30.0"; sha256="0fwz77q5xqddhxilbcrv5aq5bhw4i15b0m4bw3dsmw26m0xlwsrq"; depends=[Biobase gtools RColorBrewer]; }; + spliceR = derive2 { name="spliceR"; version="1.16.0"; sha256="1h4bbn20cfq5ml0rdy0gn5z4bqf82v6nd3y2zylni29f2gp1j3za"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; }; + spliceSites = derive2 { name="spliceSites"; version="1.22.1"; sha256="1fc4h0ssd0kapgmjfksf0k6zpn5z6gkfvmacgap1nqm8s4y3912z"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; }; + splicegear = derive2 { name="splicegear"; version="1.46.0"; sha256="0c8h9z525qv32d60q24x9crm1aqm511fr2c9ihwq5q7wx3wzi7bq"; depends=[annotate Biobase XML]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.2.0"; sha256="0wv0k4x6c3m2km0qkgsmb2rr1pj3mdzacqafvg3y8f8996nn4k7s"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.40.0"; sha256="1qby74smkq6v8lmknsinfmp4qphmndfbs9b8828h68x02j2cmp06"; depends=[RColorBrewer]; }; + spotSegmentation = derive2 { name="spotSegmentation"; version="1.48.0"; sha256="1ia6nmhllvw19hfp7zw41n43wclmzgirbcm274l1d85nqxq0a277"; depends=[mclust]; }; + sscore = derive2 { name="sscore"; version="1.46.0"; sha256="0s6pd5m18m90fgsaqcjwq6py886z257xz6b3xyg5zr3hqy0nzy9j"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.2.0"; sha256="1rhijb4wyahvjfpsz5kkmw1rxc8qj9w1f5imkzb5p59n4cj094b0"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.48.0"; sha256="1nj2nhxf85qbpx43j2ymb25wnhd6anw3a2dgxhi3bjpx6qlngnhs"; depends=[gdata xtable]; }; + ssviz = derive2 { name="ssviz"; version="1.8.0"; sha256="1lpf941whhmksw8y8ingaqp17687f3xkgs5rimq65px8bfpa7apq"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.16.0"; sha256="1rx4khhj24rdkx2zf5zlgx5avkpgx3qpg0ly815gbdrv7j7imx0f"; depends=[cellHTS2]; }; + statTarget = derive2 { name="statTarget"; version="1.4.12"; sha256="0i4dq5563fkcryax1n5mhdir9w6bq72xxx2c5alb4si892c14ygr"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr pROC randomForest rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.46.0"; sha256="0ns0abii8h6dxd44n9hdh7ww11mwb9izcpawxg2vwdqj5wv342qg"; depends=[marray MASS]; }; + stepwiseCM = derive2 { name="stepwiseCM"; version="1.20.0"; sha256="0fyf4n76r8p53byapfb0fjp7dyxsy3gh2d7f4sl81hsa69zz703g"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; }; + subSeq = derive2 { name="subSeq"; version="1.4.0"; sha256="0ly7qcghf9979qmxjvd3ihs7wqys1r45x459jp3sl3skf3cnlz9m"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.12.0"; sha256="05jaqr98rwy02wzppbb2q77yw7yjkz7h6wd74mhd3v8dk4h7963g"; depends=[ape hexbin MASS]; }; + survcomp = derive2 { name="survcomp"; version="1.24.0"; sha256="03232xxda6w9cxj7q84bdqjiza7y36kxk6l9n1nqawmy2kayc3kn"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + sva = derive2 { name="sva"; version="3.22.0"; sha256="1wc1fjm6dzlsqqagm43y57w8jh8nsh0r0m8z1p6ximcb5gxqh7hn"; depends=[genefilter mgcv]; }; + switchBox = derive2 { name="switchBox"; version="1.10.0"; sha256="1avzqy2iqfzb0f6d03bhjr6fr835mwy3isga96fgxnyyca8cf81r"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.0.0"; sha256="0335xxl5g3xi6g9qhhhgm6qhaqpv2dqs1579c9agz05hm5fm3r1c"; depends=[Biobase dplyr ggplot2]; }; + synapter = derive2 { name="synapter"; version="1.16.0"; sha256="0bqldlj2fq55nlsbx0d59i8rcsja9sapx34jgm8vfrch8qng9srv"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; }; + synergyfinder = derive2 { name="synergyfinder"; version="1.0.0"; sha256="09vznrqz6f9db9wxralg3sb8jx8wra1d1lw5z8ywm8xfsc6jjs4s"; depends=[drc ggplot2 gplots gridBase kriging lattice nleqslv reshape2]; }; + synlet = derive2 { name="synlet"; version="1.4.0"; sha256="18sik8k7j72sd2ix6k1qvcx44njf6rbbrj8bp6y60nzbc4z7psfk"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="1.8.1"; sha256="0hyi841w8fm2yzpm6lwqi3jz5kc8ny8dy5p29dxynzaw5bpjw56d"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.12.0"; sha256="0jypkql5fklqsr79hzj2fvkzkam1gxrjhkhfqjpws53bvy1f6d55"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; }; + ternarynet = derive2 { name="ternarynet"; version="1.18.0"; sha256="14dj124wp0q5cdhmy7ywdvrzs2dpv2gwhwqmzbqazljmmjc49mzk"; depends=[igraph]; }; + tigre = derive2 { name="tigre"; version="1.28.1"; sha256="0imsxpk0v9vwai48hmd3ndaki5z9v3yim0a3kmx3y1aym71wx68c"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.52.0"; sha256="1h1bgkc2smlxrivsqv5k92ynlcwf7gzpjlzsgaimcjvrzd6rvxcp"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timecourse = derive2 { name="timecourse"; version="1.46.0"; sha256="0m8jlair0bzv0rw52ydv5r1bjnkdq3vxaavhbrpaqynx31lc9hqk"; depends=[Biobase limma marray MASS]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.52.0"; sha256="1iazw1dc0xr0vdm9vlxy0awlxmdjsvc1l0g9zrqr9h1mldpi1p5x"; depends=[DynDoc widgetTools]; }; + tofsims = derive2 { name="tofsims"; version="1.2.0"; sha256="0msmpix09ypq9gn4gh0z15caap1736zqzzda3zp8pnbjvj45jvv6"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; + topGO = derive2 { name="topGO"; version="2.26.0"; sha256="0j6sgvam4lk9348ag6pypcbkv93x4fk0di8ivhr23mz2s2yqzwrx"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + trackViewer = derive2 { name="trackViewer"; version="1.10.2"; sha256="0a54xl7g8p6nzw6zyxchb4qinbzpfl6d7g12080lnjvkcf8dm2pj"; depends=[AnnotationDbi GenomicAlignments GenomicFeatures GenomicRanges grImport Gviz IRanges pbapply Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.8.1"; sha256="0px4lhnz6nswih0fwqhqa37wl8j4pc33jyl2yrvi8dhfky3n4pn4"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + transcriptR = derive2 { name="transcriptR"; version="1.2.0"; sha256="0ny0qnwrzd9xyhjdkb6cigdsk4k0db3qivkma553zifrwrd41ja9"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + traseR = derive2 { name="traseR"; version="1.4.0"; sha256="03c33z1832rxq2h7hi69ya07708264v57h4f5xn29c0xmgd9zz7j"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + triform = derive2 { name="triform"; version="1.16.0"; sha256="18s80s90bfjz5nnm3xh0x1h2px5cq3la1x4vir1g3bgbqgmmfrrm"; depends=[BiocGenerics IRanges yaml]; }; + trigger = derive2 { name="trigger"; version="1.20.0"; sha256="1yg6vcsqccfdd6im5xfa7m5zcm2l1iyd46bj4zfc4fjwbgqw833p"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.12.0"; sha256="1wdjapmj8wxgjg6c201jx14c1gakgr79x8xdszw8kwpnb5ih9byn"; depends=[]; }; + triplex = derive2 { name="triplex"; version="1.14.0"; sha256="0bxxs37iia281k4y94bs0n356xpfw9wvxzzwj8pyqp2gdw876yhj"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tspair = derive2 { name="tspair"; version="1.32.0"; sha256="1vicp69g5ykvqxpp00rgmnvgg87ra40wyvlnb9gj3xy3g9ixqj8g"; depends=[Biobase]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.20.0"; sha256="0n6g74088ikbnfzzmiq60r3l51rch51krc05zzjg2vw1gx5zschn"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.50.0"; sha256="0d84xcvpr7y1c6mr4z9dnp2bck52dzw7xbf99dwmj20vxq9d424r"; depends=[Biobase]; }; + tximport = derive2 { name="tximport"; version="1.2.0"; sha256="1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.0.0"; sha256="14bb5sfl0fwmg1g214dqk4i3daqxay0jkcw7a3wlh6a61dcrcfbl"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.10.0"; sha256="108rrifxbk9g06ssfa4jx73j6r0r5d1xaagk071c6zi4a09pa3hh"; depends=[BiocGenerics HTqPCR]; }; + variancePartition = derive2 { name="variancePartition"; version="1.4.2"; sha256="0iidrw8pcrd6c7z5sdff163108q493im8csikl1ahiyz1dxwfhw8"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 MASS pbkrtest reshape2]; }; + vbmp = derive2 { name="vbmp"; version="1.42.0"; sha256="0dqk8lgnib6if2j4j03zl59yc1g97457ib97ayycws9l56amf135"; depends=[]; }; + viper = derive2 { name="viper"; version="1.8.0"; sha256="1wnaqfm6lds9qb6dqqrv8k8asbvgfimnkg4q7czv9bk30b9820i5"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vsn = derive2 { name="vsn"; version="3.42.3"; sha256="0mgl0azys2g90simf8wx6jdwd7gyg3m4pf12n6w6507jixm2cg97"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.14.0"; sha256="0w52411h0w3bidgcqxanw8f4j2053iff2dfc3qzaiaxj6gfcbf4p"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + wateRmelon = derive2 { name="wateRmelon"; version="1.18.0"; sha256="1jl8h5xdppnvb8zfj103858dh6lr9w20r64y769wg1kpd3zxvxfw"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.8.0"; sha256="013931vz9xz12vz27i15lr63sgmc95krqkx9kz0nsmfs458c6qfz"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; }; + waveTiling = derive2 { name="waveTiling"; version="1.16.0"; sha256="0234jqsc1q2na8x0cnfc8lm52hyqakmp0bc377d6cfgzcdp7racg"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; }; + weaver = derive2 { name="weaver"; version="1.40.0"; sha256="0zvhiasy3s428xy0n0fk0601dbs7fgwpqmp90fbq26aj4gfxy5vg"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.46.0"; sha256="0alxpikfnfhsfjkkj8cz27x661r8gwvwvxnzndvzbw5smnyklac5"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; }; + widgetTools = derive2 { name="widgetTools"; version="1.52.0"; sha256="1jj18mkaq8fc5zdaf1l1vvs9barx9b5wp0qa8rvx3j6zacdlbw2r"; depends=[]; }; + xcms = derive2 { name="xcms"; version="1.50.1"; sha256="0gr59vn52cmpsqlbqlr55a6rfwq0sk2gqnba1fhyfjd22cbghxm8"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet multtest mzR plyr ProtGenerics RANN RColorBrewer S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.32.0"; sha256="02fm6sy5ynq450pkcf1zlwj2ih6f48pishmhia2d5is5iy22acbh"; depends=[]; }; + xps = derive2 { name="xps"; version="1.34.0"; sha256="1hrprdnqyy7rrvrzsnm9sy75q31zgxy134v4zbivya8f30dap4x8"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.0.4"; sha256="0dirg1nl2bp1xr0m10yzckhwynxl6p6jmvb5s5b03g66m4a7i72p"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yaqcaffy = derive2 { name="yaqcaffy"; version="1.34.0"; sha256="0wv52qnds4ni2a1p7m54ihdwiqxzdyvq0fb5dzjcq41abnkpiqsi"; depends=[simpleaffy]; }; + yarn = derive2 { name="yarn"; version="1.0.1"; sha256="1ra8b711inispl3in1ajjwkyxax6w9w5nb9w47iacyk7kp6vi3a3"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.20.0"; sha256="0hbk90q5hl0fycfvy5nxxa4hxgglag9lzp7i0fg849bqygg5nbyq"; depends=[]; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index a19aa0f51a2..756aced3176 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,11 +4,11 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2017-03-03"; }; +let derive2 = derive { snapshot = "2017-04-20"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; }; - ABCanalysis = derive2 { name="ABCanalysis"; version="1.1.2"; sha256="1z7m8j6zqai7kg5b00wmv7hjndpb29s6819bshwrqc7z0vz71491"; depends=[plotrix]; }; + ABCanalysis = derive2 { name="ABCanalysis"; version="1.2.1"; sha256="0wac1ksmnxa36v99ca4hv8k0rsh3igwpcllmlv9wf7i9kgqviqwi"; depends=[plotrix]; }; ABCoptim = derive2 { name="ABCoptim"; version="0.14.0"; sha256="0nqnflidknwxj4bzql486cs4fi51iwyw73b5sdf26s705hkknhj0"; depends=[Rcpp]; }; ABCp2 = derive2 { name="ABCp2"; version="1.2"; sha256="1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"; depends=[MASS]; }; ABHgenotypeR = derive2 { name="ABHgenotypeR"; version="1.0.1"; sha256="08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"; depends=[ggplot2 reshape2]; }; @@ -17,6 +17,7 @@ in with self; { ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; }; ACDm = derive2 { name="ACDm"; version="1.0.4"; sha256="0b4f02ga5ra66mbrm79g0bnlzmii82rks9kmxixxqgf18yhlyjil"; depends=[dplyr ggplot2 plyr Rsolnp zoo]; }; ACEt = derive2 { name="ACEt"; version="1.7.1"; sha256="1h0lfzz3ydkr8idbsqhddcwsc0q7rschgypf4vb4v62f636fxw9b"; depends=[BH MASS Rcpp RcppArmadillo]; }; + ACMEeqtl = derive2 { name="ACMEeqtl"; version="1.4"; sha256="02hc33g35x59jn9skcspgam1qskjvwy5djrg2djl9qmwq4aj0j9k"; depends=[filematrix]; }; ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; @@ -37,26 +38,27 @@ in with self; { AHR = derive2 { name="AHR"; version="1.4.2"; sha256="15khncbbnpbvj6rcn6rklzhv5a0mmfyjljv77bsx96zfis7mk2d7"; depends=[etm MASS Rcpp RcppArmadillo survival]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.1-0"; sha256="0zksb2qxb1q054kwg4acp94hxqiasd0yw1bkllp2r38640bvlj3b"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="1.7"; sha256="0c0057rp10aav41z7ilppbv8gsqf8ik2srygr5wx95b7hl1a4cvb"; depends=[MASS nortest tseries]; }; - AIG = derive2 { name="AIG"; version="0.1.1"; sha256="0llsfx6nfkhz37vdqd1mjbv0sh3v2q9drk7dml5qzdxkqxbbcyi6"; depends=[dplyr mgcv]; }; + AIG = derive2 { name="AIG"; version="0.1.3"; sha256="1wm22kf0vpvki0p4gixx4aavij2r2ns4pjv5kidfj12z1r4yc7y5"; depends=[dplyr magrittr mgcv rgl]; }; AIM = derive2 { name="AIM"; version="1.01"; sha256="11lkfilxk265a7jkc1wq5xlgxa56xhg302f1q9xb7gmjnzdigb21"; depends=[survival]; }; ALA4R = derive2 { name="ALA4R"; version="1.5.6"; sha256="0fj5y6z179glhc2jj3ksd5w29xmlqm71n23hp1vynrza70fz0gna"; depends=[assertthat digest httr jsonlite plyr RCurl sp stringr wellknown]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALKr = derive2 { name="ALKr"; version="0.5.3.1"; sha256="09df3vx2q0sn8fwz2cc9lckzwrf2hgbglzyn376d6nkrm6gq792a"; depends=[MASS Rcpp]; }; ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; - ALSM = derive2 { name="ALSM"; version="0.1.9"; sha256="11lj493wpf2hkk6cim93qad9ikqq1ni5i65xbpzj1qwq8zv7bdzk"; depends=[car leaps SuppDists]; }; + ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.1"; sha256="0frpnycnljz6r24cg4z99ivm3rbg9j1nxfkhw18vbrb7gcl1hqj6"; depends=[cubature lattice]; }; AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; AMCP = derive2 { name="AMCP"; version="0.0.4"; sha256="051xvnr4zc25w00kh4gkffgigmhmcbqpwh9654jv37glr8ip2v3l"; depends=[]; }; + AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="0.1.0"; sha256="0wqz9akk5340k0z5791dh8zmh7bfrj7ln05xlw548dql47w0xnrk"; depends=[]; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.2"; sha256="0503vwagrlg14f8n15p7jsz25mvmjinr1cyns24hpp4y2fgbc56s"; depends=[unmarked]; }; AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; }; ANLP = derive2 { name="ANLP"; version="1.3"; sha256="1m1jnfaqny6qprgyk4f3naan5i5cildawv322h6mc25nypwl12m4"; depends=[dplyr qdap RWeka tm]; }; - ANOM = derive2 { name="ANOM"; version="0.4.3"; sha256="0ayz5jl7pkz07n0dv4q99n3b47dwxj2ry6x4zc5xz5mgs5pgv2nl"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; + ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; }; APSIM = derive2 { name="APSIM"; version="0.9.1"; sha256="0ws9zl2c5m58j0rpbhkpd1rs0pasd4fazd25xw7b3s9b738clfwa"; depends=[data_table lubridate plyr RSQLite sirad stringr]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; - APfun = derive2 { name="APfun"; version="0.1.0"; sha256="0iq008pq7drkl3d1m5qrhpqmmpvzxcbknax57lfzh5nxk657zx03"; depends=[]; }; + APfun = derive2 { name="APfun"; version="0.1.1"; sha256="0vb5lmyq8wnwnxikhslaqxd65rs2pv0k3l5bghdzj6s0hp1j6kxp"; depends=[raster rgdal]; }; APtools = derive2 { name="APtools"; version="3.0"; sha256="0v5xgznc8hvw3gid8x5chksc62zpwbx34qsh64sv7d1kqmh5w26j"; depends=[survival]; }; AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; }; ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; }; @@ -77,9 +79,10 @@ in with self; { AWR = derive2 { name="AWR"; version="1.11.89"; sha256="0mg48720ny2a28yfwqx5p4r7g7rbjbzzgbkd2m31hfyz4vnrsr4v"; depends=[rJava]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; }; - AbSim = derive2 { name="AbSim"; version="0.1"; sha256="0z3ghz0wmf2z4s2mnadiacir5frzlw77gca8fkvdh8rv5pwyy38c"; depends=[ape poweRlaw]; }; + AbSim = derive2 { name="AbSim"; version="0.2.1"; sha256="1xm257dml73zjka5cs7z6yrff05xk1ab68f5xc4yqb8kkymimbrp"; depends=[ape poweRlaw]; }; AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5"; sha256="0071llj6xqsj495nlnvhzsqbrvls7fs3xscng537332xinmfhwdr"; depends=[DESeq limma Rcpp RcppArmadillo]; }; AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; }; + AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.1"; sha256="16rmwz51fy84w83vwnq2nv9mcrp4gi9ciirj5555gl1224b9i2am"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; Actigraphy = derive2 { name="Actigraphy"; version="1.3.2"; sha256="0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574"; depends=[fda SDMTools]; }; ActuDistns = derive2 { name="ActuDistns"; version="3.0"; sha256="04rff9czcgac80clpv32a1dl0jbyvfsa7wqxyywgk99w672x50i2"; depends=[actuar hypergeo reliaR]; }; @@ -87,7 +90,7 @@ in with self; { AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.62"; sha256="0cxl58by9mfd6hf4hb2d5qnm0pgb0gplgg7mm0qhvckvghjpb00q"; depends=[MASS mgcv nlme SemiPar]; }; - AdaptGauss = derive2 { name="AdaptGauss"; version="1.2.4"; sha256="0idqh1g4aypak1hm04vz2p3yklw6gbryjgm735gl46bzhlzlyyfv"; depends=[caTools ggplot2 mclust shiny]; }; + AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.3"; sha256="0f6wk9ds8ayzi0fj1dz1m3755d1sjv4v5vc1hjhfxaim127kmbqh"; depends=[caTools ggplot2 shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.4"; sha256="1az7isvalf3kmdiycrfl6s9k9xqk22k1mc6rh8v0jmcz402qyq8z"; depends=[Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; @@ -118,12 +121,13 @@ in with self; { AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; AnthropMMD = derive2 { name="AnthropMMD"; version="1.0.1"; sha256="1zb5qxmnbp2ha7hsnb4cvlc6n83gimwsq2g5pwkg7yqi5xgcp1ff"; depends=[tcltk2]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.7"; sha256="09bmd7gvkxm2jvcjzz0dqj5frr07fzb3r4qzih404zynrg859r9s"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; - ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.0"; sha256="04p1h2iahy6x65rdlrzcp18126dikrl2mapvrmh6jlwsg19b9sjc"; depends=[doParallel foreach stringr]; }; + ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.2"; sha256="01h8hi76nlwn9hnfyvzyg2d25s2r0vgpl5rz37yqkhjs5xr3rpyi"; depends=[doParallel foreach stringr]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-6"; sha256="004d2k3mhl45inb7kx1ph8xc8h9bgm7f7l3prmvqrl5792400cn4"; depends=[CORElearn MASS plyr reshape2]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; ArArRedux = derive2 { name="ArArRedux"; version="0.2"; sha256="0ql9yx46sgqkc3jd7yaw3vwg8rnykbsvpcahrgc66753kcxih04q"; depends=[]; }; + ArCo = derive2 { name="ArCo"; version="0.1-2"; sha256="1p6vz6kqdx81j0d37scfwhpz7bf0xhij01nk3aj3a5wmbg96iv25"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; - ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.0"; sha256="0q0j08ih9isd91wkm39x887fjb01481g9d7i5086zs5jyahlfdkw"; depends=[coda hdrcde shiny shinythemes]; }; + ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.1"; sha256="0i64mhyz48advljdvgyf6fvj523wf5f3kfy6zdbrwcyv0ffqln6q"; depends=[coda dplyr DT ggplot2 ggthemes hdrcde readr shiny shinythemes]; }; ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; }; ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; }; ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; }; @@ -148,18 +152,19 @@ in with self; { BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; BAMBI = derive2 { name="BAMBI"; version="1.1.0"; sha256="1578iifmjzlhxvgih8l5va07w6zk8d6li7j1w91033lfpzivahr0"; depends=[label_switching Rcpp RcppArmadillo]; }; BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; }; - BANFF = derive2 { name="BANFF"; version="1.1"; sha256="1jzmrw170577xl6zliyf53862gk1gkpx4dhb6jyqxmipkn56b8la"; depends=[coda doParallel DPpackage foreach igraph mclust network pscl tmvtnorm]; }; + BANFF = derive2 { name="BANFF"; version="2.0"; sha256="1c5wdwqqvkcm9910lhd387snd7myv9qzs9vfk87vzp3di7hdi4l6"; depends=[coda doParallel DPpackage flexmix foreach GGally igraph mclust network pscl truncnorm]; }; BANOVA = derive2 { name="BANOVA"; version="0.8"; sha256="0kjmhb1y3vkm8yw4z5fqmr1ripblk82svg2ik15ml2xnriwgdpwp"; depends=[coda rjags runjags]; }; - BAS = derive2 { name="BAS"; version="1.4.3"; sha256="1ix277flarxp5xk3w3r715i1y30bx2d49c73s1xhjrwjlpj6jj74"; depends=[]; }; + BART = derive2 { name="BART"; version="1.1"; sha256="0cys62j10s7qg7qc0ciak4654j7n48sf67nmppdwaavga309g46d"; depends=[Rcpp survival]; }; + BAS = derive2 { name="BAS"; version="1.4.5"; sha256="0ivi39yklnqdg6108w8k3wx9yw2nfcppiwn3mymh1vsdwv9ykaky"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; - BASS = derive2 { name="BASS"; version="0.2.0"; sha256="1sgz4clzbrbhj845nf1bbv16ww2j72vfvmb7n8hhnpv84r5q5dm9"; depends=[]; }; + BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; }; BAT = derive2 { name="BAT"; version="1.5.5"; sha256="1kgrc2crj834qlnac2kb18pp3dfpryhsrh4l84jpm561kk3wzcqb"; depends=[nls2 raster spatstat vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; BB = derive2 { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; }; BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; }; BBRecapture = derive2 { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; }; - BBmisc = derive2 { name="BBmisc"; version="1.10"; sha256="0cw2mhw7qhdrx91zzd5iwyh7ch9fy4wxga8j63731q6sxr1airjl"; depends=[checkmate]; }; + BBmisc = derive2 { name="BBmisc"; version="1.11"; sha256="1lh1n4bvxzivb5rbz69mvd8xdgr3gr2bnqd68a39sd1530l8r90y"; depends=[checkmate]; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; }; BCBCSF = derive2 { name="BCBCSF"; version="1.0-1"; sha256="0hvhnra68i0x78n57nlbxmz0qwl2flng9w47089jw6f9hzkq9r7n"; depends=[abind]; }; BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; @@ -169,23 +174,23 @@ in with self; { BCEE = derive2 { name="BCEE"; version="1.1"; sha256="0pssqmjj13wjbkq8ls5r9zr08by24q0k9g4f1aysgxds2a4dawd1"; depends=[BMA]; }; BCEs0 = derive2 { name="BCEs0"; version="1.1-1"; sha256="1ipg8xliqnpfa4ga9r0gqf5sfa9gass4hvrlgxazs5hb18fpsl91"; depends=[]; }; BCRA = derive2 { name="BCRA"; version="1.0"; sha256="1bbxh1kf35h31c4k565kk6grdhp5pnn8vr3nr6vnp32dp4pc05zh"; depends=[]; }; - BCSub = derive2 { name="BCSub"; version="0.3"; sha256="0ap3mj6dm71xrx9aygnhmhkiyga0ln7xcg863da27yw2a74fdjxk"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; - BCellMA = derive2 { name="BCellMA"; version="0.3.2"; sha256="10n2z8p8m7np0d3v3w7ig2hmi9lxf59fiwib27zxz5xzdkdf61af"; depends=[ggplot2 reshape2]; }; + BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; + BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.33"; sha256="1l59dk9ml40yhl71xxv0agxhiljabv15dr9gpzfdsxjbnjgk6mqi"; depends=[igraph Matrix]; }; + BDgraph = derive2 { name="BDgraph"; version="2.35"; sha256="03n6wyiv0cib5kxds2j6wyp1kqlwq9pjyxyf60yk4148yc4b7l6l"; depends=[igraph Matrix]; }; BEACH = derive2 { name="BEACH"; version="1.1.2"; sha256="10533ac575mcw9mv1lf3dgjjaf1hgzv3yn7ys9qi6b2k5fynhsg0"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat SASxport shiny WriteXLS xtable]; }; BEANSP = derive2 { name="BEANSP"; version="1.0"; sha256="0xcb81pk3iidb3dz9l4hm6cwx8hrbg5qz0sfi59yx2f7nsazr4xk"; depends=[]; }; BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="1.3.0"; sha256="0i8g9kc8vq79mbzds7s5c10kvbx3bw6c964jx33cga2z788wcv4s"; depends=[BH Rcpp]; }; BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; }; BEST = derive2 { name="BEST"; version="0.4.0"; sha256="1clch2271x9r5frgpis31b13jjgp4sdxd75s44chcislyzlinrlp"; depends=[coda jagsUI]; }; - BETS = derive2 { name="BETS"; version="0.0.98"; sha256="0snw5vw0qxllfinjzqwgkyyfavzqx5kay1xx3xqjd3w8ncj1vqs5"; depends=[colorspace dygraphs FinTS forecast foreign fpp fracdiff ggplot2 grnn gtable htmlwidgets lmtest mFilter normtest plotly quadprog Rcpp rmarkdown rootSolve rugarch scales seasonal sqldf stringi stringr testthat timeDate TSA tseries TTR urca viridis zoo]; }; + BETS = derive2 { name="BETS"; version="0.2.0"; sha256="0jw893k06wkzl4qk5mzpxhbg52f29pzg53kjg79kaknsiqbxi1m1"; depends=[DBI DT dygraphs forecast foreign ggplot2 grnn miniUI plotly RCurl rmarkdown RMySQL rstudioapi seasonal shiny sqldf stringr urca webshot zoo]; }; BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; }; BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; BH = derive2 { name="BH"; version="1.62.0-1"; sha256="01vfdpfznd4ynqql33z238xr262mvy3i80lyi8l3a3p3hi0a262p"; depends=[]; }; BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; }; - BIEN = derive2 { name="BIEN"; version="1.0.0"; sha256="1yzn7inxc471pnk8b1c6q3s07r8j400dhmplnk7nbbgfbagqi987"; depends=[ape DBI maptools rgdal rgeos RPostgreSQL sp]; }; + BIEN = derive2 { name="BIEN"; version="1.1.0"; sha256="1n6a1si3llaqm69nvh348dnvaf05g1kcklwvrys7nnr3kr3adslr"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="1.13-24"; sha256="03p4k067s5wl7i9qy1iym9ndq4977a42nbbcac40akvibqpzhgdy"; depends=[miceadds mitools Rcpp RcppArmadillo TAM]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="1.5.5"; sha256="1blqaxhx9ffa036zcz30kmkhh58l0ybmyrb2sb947f2i13h7qsk0"; depends=[haplo_stats XML]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; @@ -194,8 +199,11 @@ in with self; { BIPOD = derive2 { name="BIPOD"; version="0.2.1"; sha256="04r58gzk3hldbn115j9ik4bclzz5xb2i3x6b90m2w9sq7ymn3zg1"; depends=[Rcpp RcppArmadillo]; }; BKPC = derive2 { name="BKPC"; version="1.0"; sha256="1c5n2vdpsk00slqyxxq2c8d7ix8jdbyigrh23ykd4b95mynp9kdv"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; }; + BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; + BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.1.2"; sha256="1l4qhxj4lj6p80p85nl7ld0ynq5qlq4afibza1spy7j80av2isy6"; depends=[mvQuad numDeriv randtoolbox Rcpp ucminf]; }; BLR = derive2 { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; }; BMA = derive2 { name="BMA"; version="3.18.6"; sha256="1yx54miy5vn8rb5aynsjsfjxkblq0n1k86h1iyr14rf4q9sd3phi"; depends=[inline leaps robustbase rrcov survival]; }; + BMAmevt = derive2 { name="BMAmevt"; version="1.0.1"; sha256="1krx8isj2wp3panjcbc2ysrc2pxz2casj12qq9p18imaa326l53y"; depends=[coda]; }; BMN = derive2 { name="BMN"; version="1.02"; sha256="12gyq01cn6a9ixqgki1ihx5jrp2gw6jdj7q210rb12xlvj3p6x7w"; depends=[]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; @@ -220,14 +228,14 @@ in with self; { BTSPAS = derive2 { name="BTSPAS"; version="2014.0901"; sha256="0ankkhm38rvq06g0jnbvjbja4jv8lg21dsc0rxsy174b1i6vjhwi"; depends=[actuar coda ggplot2 plyr R2OpenBUGS rjags]; }; BTYD = derive2 { name="BTYD"; version="2.4"; sha256="13szcsgsrd7mwc4f47xrfrmsm2sg5sf7pfm21ly4cbvqcz8m0147"; depends=[hypergeo Matrix]; }; BTYDplus = derive2 { name="BTYDplus"; version="1.0.1"; sha256="0x8as4zskpbsvhh8gnvzgp833dkv01cs5fqfva9qri296343kppv"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; - BUCSS = derive2 { name="BUCSS"; version="0.0.1"; sha256="1in3y2z9maqd10fma67v8skpngsifr5cm9wsnfii0iflibs4ljbq"; depends=[]; }; + BUCSS = derive2 { name="BUCSS"; version="0.0.2"; sha256="188d9f0gdhym28xvvk5z10amdbg50w6ab4ik2r9qfc3p1v7k10q9"; depends=[]; }; BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; }; - BWStest = derive2 { name="BWStest"; version="0.2.0"; sha256="1fv4jv2fr740a1f8p6wild6szb03j8vm59y12nl4cl4aa6wn40rz"; depends=[memoise Rcpp]; }; + BWStest = derive2 { name="BWStest"; version="0.2.1"; sha256="1kwd1s1dd21qca31np49aql839j8325y8bnxlcq84nw48vqv0jgc"; depends=[memoise Rcpp]; }; BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; }; BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; }; BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.4"; sha256="1j092gsdip7rpw0g74ha0kjsrqpp5swi7wd4sxlmx6zarcqnxlal"; depends=[snowfall]; }; - BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.1.7"; sha256="06bvx2f094r4rkzpv517h81pjg211k7ajfcq0k3lxdar7ck1388a"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; + BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.2.1"; sha256="0qqq7f2s9jqr85xvab9d4pma4aknlfigh4vgm445bwamb6x8ms2n"; depends=[foreach iterators R6 RColorBrewer rTensor]; }; BacArena = derive2 { name="BacArena"; version="1.5.1"; sha256="03rk0b1dbyzhwdfj3q4a91hwhzng76fshnbnbyfblmnnnsfk4v9g"; depends=[deSolve ggplot2 glpkAPI igraph Matrix Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; }; Bagidis = derive2 { name="Bagidis"; version="1.0"; sha256="1prdbkc0qgzkkrkhp43pjyg35q9ivngk8wa4a7khlnfsj21jaraf"; depends=[abind]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.1"; sha256="09mkssic173glgcn592cb6zmz80kndggqc4hc800f91xnfql0332"; depends=[ade4 mvtnorm]; }; @@ -238,6 +246,7 @@ in with self; { BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.1"; sha256="0fg7p0q6avc0kcwcd3z4q3akrr2mkrx2yf9zcd6hhz22l3x4aphz"; depends=[BatchJobs BBmisc checkmate DBI plyr RSQLite]; }; BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="1.1"; sha256="1njivlrn3wyr5frwqd9d152y0xlvh6d38p9i1p87bnpjpzcc7iyv"; depends=[curl quantmod rvest stringr]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.6"; sha256="1kb99024jih5bycc226bl4jyvbbl1sg72q3m2wnlshl7s8p6vva0"; depends=[BBmisc brew checkmate DBI digest fail RSQLite sendmailR stringr]; }; + BatchMap = derive2 { name="BatchMap"; version="1.0.1.0"; sha256="1kwx28vbzhnglyjxrny4dky89sabvnapsywsjvnayw4plfa6igy5"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; }; BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; @@ -274,7 +283,7 @@ in with self; { BayesXsrc = derive2 { name="BayesXsrc"; version="2.1-2"; sha256="114804f6maak5dmwzw4cbigjcdw7c6sgx48af35yrvkspi1gsz3b"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.1"; sha256="1vclgdqqldkwhiilv44ihflbadllna5hvggbjbpz0r3365alnmq6"; depends=[bnlearn d3heatmap lattice networkD3 rhandsontable shiny shinydashboard]; }; - BayesianTools = derive2 { name="BayesianTools"; version="0.1.0"; sha256="195y5jwbdmi9m4vbxmcc3yw8gx2ay2vgwxsa29yb3sy542wiy0ii"; depends=[coda ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp vioplot]; }; + BayesianTools = derive2 { name="BayesianTools"; version="0.1.1"; sha256="1x5f2lgby8qpdiv6d843a6rhmfdm3vd60gii07r09lv3f494bq76"; depends=[coda ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp vioplot]; }; Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; }; Bayesthresh = derive2 { name="Bayesthresh"; version="2.0.1"; sha256="0w26h1ragqcg1i4h7c2y6vd8fig2jb2zrnvvchgg5z2hg9qdplsf"; depends=[coda lme4 MASS matrixcalc mvtnorm VGAM]; }; BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; }; @@ -283,7 +292,7 @@ in with self; { Bclim = derive2 { name="Bclim"; version="3.1.2"; sha256="0dd4fx3rlljj3zb1m8q1bam1bswg497l3y8k0h0mkvjn94b4jbag"; depends=[ggplot2 MASS mclust statmod]; }; Benchmarking = derive2 { name="Benchmarking"; version="0.26"; sha256="00w7a16lhra6rjylyj26q67mvgbc3wa27a2wmiwjz5yh7wdnh193"; depends=[lpSolveAPI ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; - Bergm = derive2 { name="Bergm"; version="3.0.1"; sha256="1ngxqpagf8snnwdm82bg8yxbf1zpzd99g32fhw9l4gjx77kpkhl2"; depends=[coda ergm mvtnorm network]; }; + Bergm = derive2 { name="Bergm"; version="4.0.0"; sha256="1iw9k9v540bnrjqqq9hvpjh8g4cr53sli31ldw4k1savzq0jirdf"; depends=[coda ergm MCMCpack mvtnorm network]; }; Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; }; BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; }; BeviMed = derive2 { name="BeviMed"; version="4.0"; sha256="16hwjs3kv1f49la2p5qlywc02n9g7g7qzb5v4m7p2mmi0p2ybmvm"; depends=[Rcpp]; }; @@ -296,24 +305,26 @@ in with self; { BigQuic = derive2 { name="BigQuic"; version="1.1-7"; sha256="1bhi9dilrprgjvqyc2hb4a0y8rm9la0m5lgry9mf184p56z1syzb"; depends=[Matrix Rcpp scalreg]; }; BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; }; - BigVAR = derive2 { name="BigVAR"; version="1.0.1"; sha256="1hsx6fl3zjxfhjr18h2gbhgh0zzh9mdmr3zh0jnbfk8wv3y1nhxv"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; + BigVAR = derive2 { name="BigVAR"; version="1.0.2"; sha256="14vb6nc6bn22dd112sg9zypkchmkv17gnwxs915k0k5vbb9czlr5"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BinNonNor = derive2 { name="BinNonNor"; version="1.3"; sha256="0lxhfys066wz8svr9mjb28rd85lhjicqw4py4j96w9zgi974ha51"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.1"; sha256="14b90y40wzqwaf1v1l92s17j0kggbcsg5c90l1r7wi3j4xcl20pc"; depends=[corpcor Matrix mvtnorm psych]; }; - BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.2"; sha256="196mn1ldbj4ngrrvr3d8aqwdjcprpjh0z66655vbzqb9m3nj893l"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; + BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.3"; sha256="18cks0hh6a49jr1yq0pwgw3scy1b7cl2060miwxswpwry9lcnnn5"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; }; BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; }; BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.0"; sha256="08w5zcyrfz55x86nwpb4k0w0lpk1ncirjp30p46421w0xz8swk10"; depends=[expm Formula lmtest numDeriv]; }; BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; }; BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; }; + BioInstaller = derive2 { name="BioInstaller"; version="0.0.3"; sha256="0fk9ix0iaaw1wsvfkh5zz9yjf740976akpanx7qdbzwhjn08r36x"; depends=[configr futile_logger git2r R_utils RCurl stringr]; }; BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; }; BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; }; BioPhysConnectoR = derive2 { name="BioPhysConnectoR"; version="1.6-10"; sha256="1cc22knlvbvwsrz2a7syk2ampm1ljc44ykv5wf0szhnh75pxg13l"; depends=[matrixcalc snow]; }; BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; }; - Biocomb = derive2 { name="Biocomb"; version="0.2"; sha256="1igav8l1s4byannhkdm5fznqrga6cv9ws1lxyam221h8cl3qz8aw"; depends=[arules class discretization e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; + Biocomb = derive2 { name="Biocomb"; version="0.3"; sha256="0shhsljg0knfp83b3hrs2c674sqx2348h5m99jhf19jf1i98pf1k"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; }; BiodiversityR = derive2 { name="BiodiversityR"; version="2.8-0"; sha256="0jfnwa7abwrharlwv9v9fdb5dq3mb74wjsc3ak9lp00s8nlj7jl0"; depends=[Rcmdr vegan]; }; Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-1"; sha256="1fnx9fcybw8agc2zba61lk4ygq8qi3b747i5cnh1b3vh6dw5fapq"; depends=[classInt fields raster sp spatstat]; }; + BisRNA = derive2 { name="BisRNA"; version="0.2.1"; sha256="1sjx53lkdhiygr2w7drs9c47hnmv2s232bsd96d6k2xn6yai593i"; depends=[knitr MASS]; }; BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; }; BivUnifBin = derive2 { name="BivUnifBin"; version="1.1"; sha256="0dxkk3pjnbjx04r9870lcr3hl4r5j7cd3y1fn800fz0qjnv5dahd"; depends=[BinOrdNonNor rootSolve]; }; BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; }; @@ -325,13 +336,13 @@ in with self; { Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; }; BoSSA = derive2 { name="BoSSA"; version="2.0"; sha256="1cj2k8ra26mnnvn3gqwl3z6qr9sy63rnszgb3a9y6dh4dkgk6hd2"; depends=[ape jsonlite RSQLite]; }; BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; - Bolstad = derive2 { name="Bolstad"; version="0.2-33"; sha256="1i01bfcmzpy9i3f3x0pmw2c6ff4zx4vk13isdnvkhbbks6ppm394"; depends=[mvtnorm]; }; + Bolstad = derive2 { name="Bolstad"; version="0.2-34"; sha256="0snqy580glwpv37hvjnivb3f06hf2prqply1nj5ks5aryabiiz59"; depends=[mvtnorm]; }; Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.3"; sha256="1s64a46wfp31jsyfdg2m8269qaq7x798y2bj0dyk69di1nxx2daa"; depends=[igraph XML]; }; - Boom = derive2 { name="Boom"; version="0.5"; sha256="1p1bgswzjply3afcgxdn67dq3gb46i9gxwm1l2v79wjpiizhagrb"; depends=[BH MASS]; }; - BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="0.7.0"; sha256="08xb931q3j16r4942p7r6cl4capc19nbywzg4hr7yv0fzcmpjprb"; depends=[BH Boom]; }; + Boom = derive2 { name="Boom"; version="0.6"; sha256="1cz78f469lhf1s9hiimz992fablfwkpm0v268vj7028lp1jj6hix"; depends=[BH MASS]; }; + BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="0.8.0"; sha256="0zkz7jsdn3adi2frnxxpnaqss81ylj6lzhbnj88qvmvgfdxgk6ls"; depends=[BH Boom]; }; BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; }; BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; }; BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; }; @@ -347,14 +358,14 @@ in with self; { BuyseTest = derive2 { name="BuyseTest"; version="1.0"; sha256="1nfj2ajah2dg1p47g2z0zf9s24sxj4dfn3nny1h4qmqwcb4vs55g"; depends=[data_table lava Rcpp RcppArmadillo snowfall survival]; }; C50 = derive2 { name="C50"; version="0.1.0-24"; sha256="17ay0rbm2cg2s27mh09xg0knk7idx6f761sc849m41vsc6pfhzk1"; depends=[partykit]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-2"; sha256="00nsnzgjwkif7mbrw7msswjxhi9aysjdx3qg3i4mdmj1rmp7c4dc"; depends=[dynlm sandwich tseries urca]; }; - CADStat = derive2 { name="CADStat"; version="3.0.6"; sha256="1qzy93fzzj4b0x0m9rrlh1wmv44rd9kvjw6wkdd3m3l2qbqsbzn8"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; + CADStat = derive2 { name="CADStat"; version="3.0.7"; sha256="0ya1y5c6hw55prr6xargb4ndm6qi6k3q2ysj3qgr4w1bs3wa32ix"; depends=[bio_infer car gdata gmodels gtools iplots JavaGD JGR lattice lme4 MASS MatrixModels minqa nloptr pbkrtest png quantreg Rcpp rJava rpart SparseM XML]; }; CALF = derive2 { name="CALF"; version="0.1.3"; sha256="0407k1afyaknlvhn5gx909vp4jl5n25r9jyqkhx9zqhzllrj25f2"; depends=[ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="0.1-6"; sha256="036nwnday098mawc9qlgl3jjjcdjnja1immg6xkq27hvv2xfbz82"; depends=[mice mvtnorm randomForest]; }; CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="0.11"; sha256="12d5558b3wldla3sgwqdqwmfixcqfa8h92bq4a8ia284946vcbbf"; depends=[Hmisc reshape2]; }; CARBayes = derive2 { name="CARBayes"; version="4.7"; sha256="0frpkq0hqxmdzv5hliyvw3g8cb26llnh9wjabqqm0sdpnzx64d37"; depends=[CARBayesdata coda MASS matrixcalc MCMCpack Rcpp sp spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="2.4"; sha256="1z0w4cbs3gbll4fzcmg4vgbnx0bq15nb1c69aql4mdqm6i0zx6xr"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep truncdist]; }; + CARBayesST = derive2 { name="CARBayesST"; version="2.5"; sha256="1rzw05qq395zymmnk54a4qkq9b9mqwwmiaac0qgqq4k2ig9l5271"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep testthat truncdist truncnorm]; }; CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; @@ -373,7 +384,7 @@ in with self; { CDF_PSIdekick = derive2 { name="CDF.PSIdekick"; version="1.2"; sha256="1h2d5xh7zj3d8r63qndvd5c8z52byn1852b51zmj6ypc90fil25x"; depends=[Rcpp]; }; CDFt = derive2 { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; - CDM = derive2 { name="CDM"; version="5.4-0"; sha256="1gbzk9iijn37njal6fq70y6hhl44zgi79yb3lwp3cxys1j2fp0kw"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; + CDM = derive2 { name="CDM"; version="5.5-21"; sha256="15i2asnc5yyhb8rdw3h9cnapiidvpvmw1gg71dn9vy5z3d1g1g3s"; depends=[lattice MASS mvtnorm plyr polycor psych Rcpp RcppArmadillo sfsmisc]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; }; @@ -386,6 +397,7 @@ in with self; { CHAT = derive2 { name="CHAT"; version="1.1"; sha256="1hl4xr4lkvb7r36gcbgax6ipqc3rsvn1r03w7fk9gf9bbyg7bkhg"; depends=[DNAcopy DPpackage]; }; CHCN = derive2 { name="CHCN"; version="1.5"; sha256="18n8f002w0p0l1s5mrrsyjddn10kdbb6b7jx1v9h1m81ifdbv0xb"; depends=[bitops RCurl]; }; CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; + CHMM = derive2 { name="CHMM"; version="0.1.0"; sha256="18wpld1anws9hv1z8sgib5nvjdg1wmk4dv5s1ysh8s0rzwnq9x2p"; depends=[mclust]; }; CHNOSZ = derive2 { name="CHNOSZ"; version="1.0.8"; sha256="03hvvkm7i2q73hkcm79136lzjn99apqmcdlfghbz0318490gxin5"; depends=[]; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.1"; sha256="11cicxfvjhbrfjsczsv25xdy7pckmz1bnjx7xq5jbg3b1wbv4g28"; depends=[Matrix mvtnorm numDeriv stringr]; }; @@ -399,30 +411,34 @@ in with self; { CMC = derive2 { name="CMC"; version="1.0"; sha256="1r9a5k79fyw01yiwxq02327hpn4l1v2lp0958jj9217wxmhn3pr5"; depends=[]; }; CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; }; CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; }; - CMplot = derive2 { name="CMplot"; version="3.1.4"; sha256="0ph8pqmlbm2j40dq4lqyfy43hz5s958vvqaglzmcqdvkgpv1ni0a"; depends=[]; }; + CMplot = derive2 { name="CMplot"; version="3.2.0"; sha256="0hrym0kadwyc36hpgskls1fhipiq1vrpyhsjzrkny10m9yny5c8i"; depends=[]; }; + CNLTreg = derive2 { name="CNLTreg"; version="0.1"; sha256="1fjc45kv2nm902vpfynfxj0n7nm2prazm44nhg2m30vd6l1ijisv"; depends=[adlift miscTools nlt]; }; + CNLTtsa = derive2 { name="CNLTtsa"; version="0.1"; sha256="0s98ckg6ms3kh49b8la2d8rsdb0m4m0v8gdbj48nqxncdvg25qk4"; depends=[adlift CNLTreg fields nlt]; }; CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; CNVassoc = derive2 { name="CNVassoc"; version="2.2"; sha256="0rvb5sl7kfyb9jp07w4zk8817s9xld9b2cb0m33lrs4kbsv7rpnx"; depends=[CNVassocData mclust mixdist survival]; }; CNVassocData = derive2 { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; + CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.1"; sha256="1bpn1zhlbm99w8d80lp7iasi1ivvh0ndhpzh8glmnlnanm2b06ni"; depends=[]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.2"; sha256="1sda41db8h5gi7gqq0hj433dd6lh4xj75skjgmgqa3p80rndw461"; depends=[corpcor mvtnorm]; }; COMBIA = derive2 { name="COMBIA"; version="1.0-4"; sha256="02yadw3zjkj0ljq2c5k5zfsn8qnlvr6gxgafzrqw9g95cawv8q4x"; depends=[gdata hash lattice latticeExtra oro_nifti]; }; COMMUNAL = derive2 { name="COMMUNAL"; version="1.1.0"; sha256="1fv5dlqajpsd9k99sfikj3ai4jpzz2fh4s3gfglwrajk0nzlxjg2"; depends=[cluster clValid fpc]; }; - COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.3.5"; sha256="15w78h0kkqbisp34g4wj2mkq4c0pb2166f1m7s65iifnnd5plvb6"; depends=[]; }; + COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.4.0"; sha256="09srjrav5x6hfgf0b0k1pjbr8ddkjjibzar971z5vr1m7wh4a29n"; depends=[]; }; CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; }; - CONS = derive2 { name="CONS"; version="0.1.0"; sha256="1pcr1pfchys4x566sa69als59vwpaa91jhl038pkj69scchv0max"; depends=[FactoMineR gWidgets pander raster readxl REdaS]; }; + CONS = derive2 { name="CONS"; version="0.1.1"; sha256="0w0rca4z3hij0lbabpdnhv2lb52gx574g7bqp6q16772pi4685hf"; depends=[FactoMineR gridExtra gWidgets pander raster readxl REdaS]; }; CORE = derive2 { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; }; - CORElearn = derive2 { name="CORElearn"; version="1.48.0"; sha256="1pm2gqns1d7yxv4i5h110b6s6i6an7xnz379n1cm8rcfnlpndryz"; depends=[cluster rpart]; }; + CORElearn = derive2 { name="CORElearn"; version="1.50.3"; sha256="0pa8jlvqgkdw3r5k6wlalq6xnqqc75gg2hzmc7s0qy57wjx450jw"; depends=[cluster rpart]; }; CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; }; COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; - CPBayes = derive2 { name="CPBayes"; version="0.1.0"; sha256="004n2s09b8wfg8aj7j400hvkbwxsxd27fyk72x6nnc8lkrpwzs5b"; depends=[MASS]; }; + CPBayes = derive2 { name="CPBayes"; version="0.2.0"; sha256="1h4mipvmcjhs1s1dqbibxz2sf73psbwplgc5ki65y5654yqc26pl"; depends=[forestplot MASS]; }; CPE = derive2 { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; }; CPHshape = derive2 { name="CPHshape"; version="1.0.1"; sha256="05krqcd4spgghp3ihv1zfql6ikd64vkqnrjghjvfki3hi3zi5k7h"; depends=[]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.1"; sha256="1w8yp37vxz2cl0yqdzpyxdfq2scz2h9i4crjzjmjzpzffi45f06s"; depends=[mvtnorm plyr]; }; + CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; }; CR = derive2 { name="CR"; version="1.0"; sha256="0smb2i560dwbxg3mp1svfxmaiw193pd3klwqq0i27czf07k1xfvj"; depends=[]; }; CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; }; CRF = derive2 { name="CRF"; version="0.3-14"; sha256="0xhjj76730yjlpwbhcpdzqp7s37a9rhf4adk1s7hfb0jm8b76fgh"; depends=[Matrix Rglpk]; }; @@ -430,6 +446,7 @@ in with self; { CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; }; CRTgeeDR = derive2 { name="CRTgeeDR"; version="1.2"; sha256="0dq5q1gb392imfgqhzqphc7h5af0qcx2vx4fh77gwpz08ycrlkmg"; depends=[ggplot2 MASS Matrix]; }; CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; + CSeqpat = derive2 { name="CSeqpat"; version="0.1.0"; sha256="097r5hhq45wl783qakqs8j2b3315j1bvk9pcpssx6svkn507hh66"; depends=[NLP tm]; }; CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; CTT = derive2 { name="CTT"; version="2.1"; sha256="0v8k54x9pib6hq3nz3m80g1a3p003f7bn8wnj9swwvacc90d6n44"; depends=[]; }; CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; @@ -438,22 +455,24 @@ in with self; { CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.3"; sha256="149d16d5y7zxkzq8gmb5spfrvirv0vyhk2qx0v7vclkr8adz9sva"; depends=[]; }; CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; + CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; CVST = derive2 { name="CVST"; version="0.2-1"; sha256="17xacyi8cf37rr2xswx96qy7pwkaqq394awdlswykz3qlyzx4zx2"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; - CaDENCE = derive2 { name="CaDENCE"; version="1.2.3"; sha256="1810a785czaxwfvhjnmhzqg743mgcgrdp3j1irlfl9pbli0ppidx"; depends=[pso]; }; + CaDENCE = derive2 { name="CaDENCE"; version="1.2.4"; sha256="1v6930wyh12jc2mrr4svg36nppxd1bqvcqardj2bjxzxzg998bq7"; depends=[pso]; }; Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; }; - Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.1"; sha256="1wgksvfkpbr7sicfnv9g5w04kbrb9pwl40aqbflzy9kmqbjy5hhx"; depends=[]; }; + Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.2"; sha256="07g7ik3xb9ijghkz94qyk87c2d4q942h4d0yicwr1j1xzcv5qzsw"; depends=[]; }; CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.0"; sha256="1r3318rzh29cgq72gdp16z60xkan7hyh1vj4gjg3pzbxy8zawqxx"; depends=[survey]; }; CampaR1 = derive2 { name="CampaR1"; version="0.8.4"; sha256="0qlbrmqfs38bg9hsmvzd3cfgsbd2zx99f64bjv1gfhkmysmg1ysb"; depends=[bio3d ggplot2]; }; - Canopy = derive2 { name="Canopy"; version="1.1.1"; sha256="0hv7ar4kj3d7cfpj2j5wcdbzag7w7x0zifay5hdyr0j6v776zvh6"; depends=[ape fields]; }; + Canopy = derive2 { name="Canopy"; version="1.2.0"; sha256="10z511vp9nmyf7jaihdx2367ddsnlrfg4rdzlz7rg9b5k9d92pja"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="1.3"; sha256="1a8ic2ny2zkqy6xsnzhlc3hybhk200d8jbdbjfy7jav7n757kr0y"; depends=[]; }; CatDyn = derive2 { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; }; - CatEncoders = derive2 { name="CatEncoders"; version="0.1.0"; sha256="1vg8a4v0fj8c4dwpynl8jf9d9lpjl08xpzkr4aa32gqkkk016mh3"; depends=[data_table Matrix]; }; + CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CausalFX = derive2 { name="CausalFX"; version="1.0.1"; sha256="0v0diqq9fa1v9n3v5m5shvwlgmj91cbbb78243rwib1h3pyacihf"; depends=[igraph rcdd rje]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-3"; sha256="0g68m2kxixwr7rx65r57m1n0qa161igc428zh9rj91fg6h4pdq4w"; depends=[gam]; }; + CausalImpact = derive2 { name="CausalImpact"; version="1.2.0"; sha256="0l7477m320nzwpvkcnj14rj9sh4brzc48kgzh0cadfm3145583sr"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; Causata = derive2 { name="Causata"; version="4.2-0"; sha256="04lndjy4rdf063z75zv42b000z06ffnr91pv2sql1ks6w60zmh1m"; depends=[boot data_table foreach ggplot2 glmnet R_utils RCurl rjson RMySQL stringr XML yaml]; }; CePa = derive2 { name="CePa"; version="0.5"; sha256="1y2q72j8bqx509i62a2x9j40rj5bkpgx4z6fwj05ibazc1441asd"; depends=[igraph snow]; }; CellularAutomaton = derive2 { name="CellularAutomaton"; version="1.1-1"; sha256="0kmw2ic161xwalqa63hznic4n4hdz20hsilf2awlcldg7m9si1zd"; depends=[R_methodsS3 R_oo]; }; @@ -481,6 +500,7 @@ in with self; { CircNNTSR = derive2 { name="CircNNTSR"; version="2.2"; sha256="0z29dsvcwpra1ny8kj486dpnrak272wmkfnaiyashzcqpnkmkg03"; depends=[]; }; CircOutlier = derive2 { name="CircOutlier"; version="3.2.3"; sha256="1vyac4mjkn6p4p9n5finqqak6g7m3hj04a66v3w797jn1wbd1xly"; depends=[CircStats circular]; }; CircStats = derive2 { name="CircStats"; version="0.2-4"; sha256="1f2pf1ppp843raa82s2qxm3xlcv6zpi578zc4pl0d7qyxqnh603s"; depends=[boot MASS]; }; + CircularDDM = derive2 { name="CircularDDM"; version="0.0.9"; sha256="187vq7s8bp822lncv4gi3f98myg8na6cbg92zvdlzbsx50fylipf"; depends=[Rcpp RcppArmadillo]; }; Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; }; CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.0.1"; sha256="148yfsz8di73iy81l2b97a7jcr3d3gs4a4jzjgybs7305ld1ngrq"; depends=[]; }; @@ -499,7 +519,7 @@ in with self; { ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; CoClust = derive2 { name="CoClust"; version="0.3-1"; sha256="00i0dghd35s91kkkxj1ywa5i93752mfa5527ifclw4xxxshppva8"; depends=[copula gtools]; }; - CoFRA = derive2 { name="CoFRA"; version="0.1001"; sha256="1nb6054mb8md3i0108n6jgwc9ydn9vn82q01jlnynfq2r3j06drw"; depends=[gplots Rcpp]; }; + CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; CoImp = derive2 { name="CoImp"; version="0.3-1"; sha256="0zj152w4cvnbfl144ggs3ixmyywxf9dqhh04jfydmv2a8n6px89n"; depends=[copula gtools locfit nnet]; }; CoSeg = derive2 { name="CoSeg"; version="0.38"; sha256="1fkaq5zwy8j17jvpv0kzmq40km83qn9s556661ghknzp7w8flih8"; depends=[fGarch kinship2]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; @@ -520,7 +540,7 @@ in with self; { Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompGLM = derive2 { name="CompGLM"; version="1.0"; sha256="04bjal92r0m7is5ygqpd0mdz3fb3pwcr7rc3mbxg9sg57nff3kf5"; depends=[Rcpp]; }; CompLognormal = derive2 { name="CompLognormal"; version="3.0"; sha256="1dhgr9l713l2n889bpa47lbg2qab0fz0r15qa928c0b9nz688ddm"; depends=[numDeriv]; }; - CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.2"; sha256="0bsgbdblxpv57mbwnf51xyiydp2bqyxkg4zzwqki85cv5xqlrq1n"; depends=[]; }; + CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.3"; sha256="1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4"; depends=[]; }; CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-4"; sha256="1a3j5j50fz3f8vkvdmfccv5hn00spk08xanadqxpdy8pn925gqqb"; depends=[]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.1.5"; sha256="0z9fjd344wc5bisir7hf64abli7in8b5860y1012vmah4vz9knlr"; depends=[Matrix]; }; @@ -534,13 +554,13 @@ in with self; { ConSpline = derive2 { name="ConSpline"; version="1.1"; sha256="0ap3qxqdby9rf665vh40m6f4wjz7q3cz8i4abw1ccryjlwjv1kzp"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; - Conigrave = derive2 { name="Conigrave"; version="0.1.0"; sha256="173panb3pz09fikzx3p0yjszizzi4sjl4pzrcw73ywvzkksg55kr"; depends=[ggplot2 miceadds mitools]; }; + Conigrave = derive2 { name="Conigrave"; version="0.1.1"; sha256="0k9azng63pyq7xic5w00mllbyq17pz8g1zmgr6zpvkmfv13fa6yw"; depends=[ggplot2 miceadds mitools]; }; ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; }; ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; }; - ConsRank = derive2 { name="ConsRank"; version="1.0.2"; sha256="11pdccndmiz4vm15kaidzwy92vi2aqi5klwxag4p2xk1xivnlm0n"; depends=[gtools MASS proxy rgl]; }; + ConsRank = derive2 { name="ConsRank"; version="2.0.0"; sha256="05anbiahyfbw084zkaqs4p4hzpqrn1lwpicp7n55ndv1agmys22r"; depends=[gtools proxy rgl]; }; ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.1"; sha256="04i8n8fmf2qs08dmlfls9j2509aqzb665qaz97na0wanbldxidbr"; depends=[caret mclust mixture mnormt mvtnorm]; }; ConvCalendar = derive2 { name="ConvCalendar"; version="1.2"; sha256="0yq9a42gw3pxxwvpbj6zz5a5zl7g5vkswq3mjjv5r28zwa3v05vc"; depends=[]; }; - ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.1"; sha256="0878fz33jxh5cf72lv0lga48wq2hqa4wz6m59111k59pzrsli344"; depends=[lattice tkrplot]; }; + ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.1"; sha256="0kl67ds6369mxl2i93h43r00ji12qkg0k9m4jhcxsb0ydd8rfqgp"; depends=[lattice tkrplot]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="0.0.5"; sha256="0zc2i3d7b0p7qn6gy1pygq6xn31fkasdqgqa40zidzjwiwl3h3g4"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.0"; sha256="021x40l5p6ip5br3qnca6nywkx9fpmgx5jm8i2dngj6yz6rc3hag"; depends=[matlab statmod tensor]; }; @@ -549,9 +569,10 @@ in with self; { CopyNumber450kCancer = derive2 { name="CopyNumber450kCancer"; version="1.0.4"; sha256="0csmrv5n4lxd19q8q94sxs374lkqilp5x2dj8nxzs0x1v8hn0knm"; depends=[]; }; CorReg = derive2 { name="CorReg"; version="1.1.9"; sha256="0x5bcqyi03pxsajjbsq3hwp1d4f1b8150n1z0wsdnv1jyg1rc9d7"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; }; Corbi = derive2 { name="Corbi"; version="0.4-1"; sha256="01xspwzgic7yfmnp6l8w33mjnyr8lvajzp6wvwpgq3ffhli5hrf0"; depends=[CRF Matrix mpmi]; }; + CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.0-2"; sha256="01hn80aidkzy9b4ki5f8y80hxzp96kqwzbyj7f3fjfvskvw2akhb"; depends=[data_table RColorBrewer rlist]; }; CorrBin = derive2 { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; }; CorrMixed = derive2 { name="CorrMixed"; version="0.1-13"; sha256="02zg5kmv5qxnasnz872r3z7x7dmdcniq1x5xyfnnb3niwkdjgxzx"; depends=[nlme psych]; }; - CorrToolBox = derive2 { name="CorrToolBox"; version="1.3"; sha256="0q6w3avlpdr35aigc2a03wzi36z5k3c7hacbarjpfv9lig3c35wc"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; + CorrToolBox = derive2 { name="CorrToolBox"; version="1.4"; sha256="15x9l4swgrbry10k5iws75xs4bbh7mpcg4f4fx9yd9z92yq72ly2"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.14"; sha256="1if4qb1d6mg3435pk3znln8id8fj12n3j9sjv4zn104v2fr90mhr"; depends=[caTools digest xcms XML]; }; Correlplot = derive2 { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; }; CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; @@ -570,6 +591,7 @@ in with self; { Cprob = derive2 { name="Cprob"; version="1.3"; sha256="1hahvkmniahhar47nha96vcj810895wgvvg9si112hnv3sjaql3r"; depends=[geepack lattice lgtdl prodlim tpr]; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; }; + CrossScreening = derive2 { name="CrossScreening"; version="0.0.1"; sha256="147zycpq83n3rh6fd2d1vh200avfam63r0rv3yg9mgl3myqrv5v6"; depends=[plyr sensitivitymw tables]; }; CrossVA = derive2 { name="CrossVA"; version="0.9.0"; sha256="0q5fc2maxq70s6h6dmj6amn6xzrjn6rzcsnq0cqrah2c8b6y351y"; depends=[lubridate]; }; Crossover = derive2 { name="Crossover"; version="0.1-16"; sha256="19697wy066apkxrm99s7vflc0ih6zxxmyvj7x3dzh2icnv1gg1bb"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; }; @@ -577,25 +599,28 @@ in with self; { CuCubes = derive2 { name="CuCubes"; version="0.1.0"; sha256="1cpazar85rp8xfjvy0vxivr61grzvxz7a9mirxvhynln964by6ns"; depends=[]; }; Cubist = derive2 { name="Cubist"; version="0.0.19"; sha256="1bjajcr2qnmqy8cakgiy4q07nj9dygz15a9jry5sa4nbkabpj4qh"; depends=[lattice reshape2]; }; Cyclops = derive2 { name="Cyclops"; version="1.2.2"; sha256="1ly8rmfssjbi04b0k200iqh0gv3zr53x9vhj6hnrg1n3dqw0smn5"; depends=[BH bit ff ffbase Matrix Rcpp RcppEigen RcppParallel]; }; - CytobankAPI = derive2 { name="CytobankAPI"; version="1.0.0"; sha256="1hkd9chpn78hwjbyv1c9pa03fh3p3bj2axilibz8pyxd2vfqdk3y"; depends=[httr jsonlite]; }; + CytobankAPI = derive2 { name="CytobankAPI"; version="1.0.1"; sha256="097x07wjzwyviix3351m01az5y8dpmmbz7m3rb0by5ncbc3h3v9z"; depends=[httr jsonlite]; }; D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; }; + D3GB = derive2 { name="D3GB"; version="1.1"; sha256="1r4hxx2qdws7c7hsnswzfh6az8mn720sk8nygilljl2ghnwpq7pa"; depends=[DBI RSQLite]; }; D3M = derive2 { name="D3M"; version="0.41.1"; sha256="1qr50xq5zccb16a1rgzfbb9bz8bbnxxb522nb8ga159nmb4cwjmp"; depends=[beanplot Rcpp]; }; D3partitionR = derive2 { name="D3partitionR"; version="0.3.1"; sha256="09172g1xz9j746y22wj7vx759a3wnv6skqqzfazl753ms07zrwdc"; depends=[htmlwidgets]; }; + DA_MRFA = derive2 { name="DA.MRFA"; version="1.1"; sha256="1w2m4m1bs7bqnhzcjgpmlvqs4fjfygy8hrh0yr5f527rx0jf1w4n"; depends=[Matrix optimbase psych]; }; DAAG = derive2 { name="DAAG"; version="1.22"; sha256="16xp4qk09v9jwm4cs7b4mpn0kgl1va9rw86viwcjc54vjc32953f"; depends=[lattice latticeExtra]; }; - DAAGbio = derive2 { name="DAAGbio"; version="0.63-1"; sha256="0f904cpyq140fbsxfqrm3wg41bncf6h2rkxfd37ij5m0qp067f0w"; depends=[limma]; }; + DAAGbio = derive2 { name="DAAGbio"; version="0.63-3"; sha256="0n82d9nsvpl6cwp95by8ff9fmdafs2fdi603dlik5890adaw42x4"; depends=[limma]; }; DAAGxtras = derive2 { name="DAAGxtras"; version="0.8-4"; sha256="18lg13mbyharidj5j7ncx8s7d72v2hcnqr00vilhf3djk2mjq7xn"; depends=[]; }; DAGGER = derive2 { name="DAGGER"; version="1.4"; sha256="0b2hzv001xhch7pqgb53lfpdcjwg5lj33i6pb884l1kx92svjfr7"; depends=[Matrix quadprog Rglpk]; }; - DAISIE = derive2 { name="DAISIE"; version="1.2"; sha256="0570q8bs2464516ink56a1ir4p5chdwnj1vygywn9lgc7n4dricd"; depends=[DDD deSolve subplex]; }; + DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.4-3"; sha256="1hic53vi7mj4fvggxjl4d3j4zw8wwczh6pldyi8idrhm45hw2nh4"; depends=[boot car effects gdata lattice MASS nnet pscl QRM sm VGAM xtable]; }; DATforDCEMRI = derive2 { name="DATforDCEMRI"; version="0.55"; sha256="0v26a1gi8l21ga5nqcnyfaa7gc8zxq6wk95b96ajgpdybb0l9s53"; depends=[akima lattice locfit matlab R_methodsS3 R_oo xtable]; }; - DBEST = derive2 { name="DBEST"; version="1.4"; sha256="1p25ddnn1r7lcqm077kxq0l5kv5104gnj0q9xf3yjyzgm4vsrfrn"; depends=[zoo]; }; + DBEST = derive2 { name="DBEST"; version="1.5"; sha256="0jh928zxif975d751x15ys9hi5l7rw3vhmpwpbv53pvgsnlxnkaq"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; - DBI = derive2 { name="DBI"; version="0.5-1"; sha256="1idwm9lkmz6ns6h0vvgml18mg0k7vjqiv9p5svrdcmx7r1rirpdi"; depends=[]; }; + DBI = derive2 { name="DBI"; version="0.6-1"; sha256="1fg158k4n6l3rzx9nrwhp4nwkwpbmv1q7z2xz5rw138zws68fkgr"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.4"; sha256="04d1q04lmmxnaapdalj61k2k4p06vpff0fzr91fa5a2mvaxl6272"; depends=[DBI R6 testthat withr]; }; DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; }; + DCA = derive2 { name="DCA"; version="1.0"; sha256="13f22vwnxgq9wh2klhprni80092qwpwvbdp7n1apfvhim13mcyf9"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; DCG = derive2 { name="DCG"; version="0.9.2"; sha256="1s2dz0vnhdhq23fqds1m2jspaz8k5zvd76z1zlbi6nb5ja5n3j3w"; depends=[]; }; DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; @@ -619,7 +644,7 @@ in with self; { DEploid = derive2 { name="DEploid"; version="0.3.2"; sha256="12yh9w6qlg3l9w9i7isic1g825d9r7qwwwf3d0x8j7prim37w5yr"; depends=[Rcpp]; }; DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; }; - DHARMa = derive2 { name="DHARMa"; version="0.1.3"; sha256="0kq8q13f3jdjczsc3vq8x6i85qydqk5jmm0yl8m6x6w2nva5glvg"; depends=[ape doParallel foreach gap lme4 lmtest MASS mgcv qrnn sfsmisc]; }; + DHARMa = derive2 { name="DHARMa"; version="0.1.5"; sha256="1mgvpyhllp7pqnas5sbn6393jkin205109g2b4pn3diyb20avqwp"; depends=[ape doParallel foreach gap lme4 lmtest MASS mgcv qrnn sfsmisc]; }; DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; }; DIFlasso = derive2 { name="DIFlasso"; version="1.0-2"; sha256="1900il14l2wvy5cjvmvg8z11q7ii311s18yif35561jilp2k9zfx"; depends=[grplasso miscTools penalized]; }; DIFtree = derive2 { name="DIFtree"; version="2.1.4"; sha256="16cyd634jflaszpfq0ymwlbv57ci1iyffwai641jczn8cny504zl"; depends=[penalized plotrix]; }; @@ -628,12 +653,12 @@ in with self; { DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; DJL = derive2 { name="DJL"; version="2.6"; sha256="1vvfh9hpanac2g22k4hqy3y7j3mn34mvasw0rx3y4vjbv3h05yw6"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="1.0.0"; sha256="1rnm9f31d021yk2rhk7zcp2l9zbyxhpvdx32q6jjjjsiignjzc60"; depends=[MASS]; }; - DLMtool = derive2 { name="DLMtool"; version="3.2.2"; sha256="13qpv6k3dn793kykxi9bmj2bl893lql7zsyfp6s3r7wp29k3kjj1"; depends=[abind boot MASS Rcpp readxl snowfall]; }; + DLMtool = derive2 { name="DLMtool"; version="3.2.3"; sha256="1jfvrr24w543c6dxg7j7s0990phlh56q97710xafdcw5cl4pxgkz"; depends=[abind LBSPR Rcpp readxl snowfall]; }; + DMMF = derive2 { name="DMMF"; version="0.2.8.0"; sha256="1zn0dpf8yn0zblh75qbln3kfxxvnbdjs5bsak1wsyayf964l7yl7"; depends=[raster rgdal sp]; }; DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; }; DMRMark = derive2 { name="DMRMark"; version="1.1.0"; sha256="11kwlk0q5c548m28n3hjsnmn8fcbjwsaw29qr4lb503mqsm2k7wn"; depends=[ellipse MCMCpack mvtnorm]; }; DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; }; DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; - DNAprofiles = derive2 { name="DNAprofiles"; version="0.3.1"; sha256="0chsndrmanb2swmhfan9iz1bzz3jsvk24n7j9fnjxibckmn2fdpv"; depends=[bit Rcpp RcppProgress]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; DNAtools = derive2 { name="DNAtools"; version="0.1-22"; sha256="1kkqbzwbivd78lpphsn9xqdxqc46ng6f86nqns18gq0s2g8gvys1"; depends=[multicool Rcpp Rsolnp]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; @@ -644,7 +669,7 @@ in with self; { DOvalidation = derive2 { name="DOvalidation"; version="0.1.0"; sha256="0vm4sxbchkj2hk91xnzj6lpj05jg2zcinlbcamy0x1lrbjffn9zk"; depends=[]; }; DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; }; DPpackage = derive2 { name="DPpackage"; version="1.1-6"; sha256="01qdl6cp6wkddl9fwwpxwvyhb7lpjxis6wnbm2s288y2n9wi4j24"; depends=[MASS nlme survival]; }; - DREGAR = derive2 { name="DREGAR"; version="0.1.0.0"; sha256="07n5iq0yv9f09wibbkamyz2x1b6sp4v0mzasfmllzlzqsr6s50gz"; depends=[msgps]; }; + DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; }; DRIP = derive2 { name="DRIP"; version="1.1"; sha256="050xfq30fp9m03ig938bci2haiglj6jj4k327fpz7r2y78cgcnn4"; depends=[caTools readbitmap]; }; DRR = derive2 { name="DRR"; version="0.0.2"; sha256="1scfwp6ry6apxzqjclsmn2frxp9qfw6zxsxn5w0j0q3sz42hz1h2"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; @@ -673,6 +698,7 @@ in with self; { DatABEL = derive2 { name="DatABEL"; version="0.9-6"; sha256="1w0w3gwacqrbqjdcngdp44d2gb16pq9grq2f8j2bhbxc4nkx12n1"; depends=[]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; + DataEntry = derive2 { name="DataEntry"; version="0.9-1"; sha256="127g8vd22rir2xdhv0jdirfg2vq7iyh6y1qak8221jxdifpfvrjj"; depends=[digest gWidgets gWidgetsRGtk2 RGtk2]; }; DataExplorer = derive2 { name="DataExplorer"; version="0.4.0"; sha256="0yxx20wzdnsz924q7mh9sbbbby04vv5rybvyqbk2s78a8lqv7abw"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; }; Datasmith = derive2 { name="Datasmith"; version="1.0-1"; sha256="1ba23b8a931pvml2dzw0zkm40akcl2lb6rps6bffrl7lvxiy35y1"; depends=[igraph lbfgs MASS Matrix nloptr truncnorm vegan]; }; @@ -687,15 +713,16 @@ in with self; { DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; - Delaporte = derive2 { name="Delaporte"; version="4.0.3"; sha256="15zwfqvi4qvv7gp34nvsbx2zhp21b6f7dyyxb09hrvll0bczxbaj"; depends=[]; }; - Demerelate = derive2 { name="Demerelate"; version="0.9-2"; sha256="00x0jjfzcq819pfrzs0jr5rvzpk4828q8kdb05icc79im1yq627v"; depends=[fts mlogit sfsmisc vegan]; }; + Delaporte = derive2 { name="Delaporte"; version="6.0.0"; sha256="0jjm84m2lq7p326ji2z207a7r04l9aj1bgy82b3isgj7i01k56xy"; depends=[]; }; + Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.0"; sha256="15w0ifcq1js0wyjscfhlbga77sgzqpmz7zmwa77y92iwna8q66ad"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepthProc = derive2 { name="DepthProc"; version="1.0.7"; sha256="1vnx9lhcrzsyygpq1rii4crxrz4c4vs60dnw0ha0y3j1mh0yxc2k"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm]; }; Deriv = derive2 { name="Deriv"; version="3.8.0"; sha256="0a5kf5bb46wszq76wc7jasd4g2clmrvs86mrz14hngmhpmlcy7gp"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.19"; sha256="086ivipgzpq8pwc7r9a0jpd6qswp6b034jn603fw9rxz8ygz7rvj"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; + DescTools = derive2 { name="DescTools"; version="0.99.20"; sha256="0jnyh7sgp3zpiqdpidyw5nv4mg99knnnaqpb1ijrdf0z104vsm2w"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; }; + DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="0.9"; sha256="0fwvpp8csqdri7gddh7xzcnzzff14hlypfin2y12a0w4x0hz2fpb"; depends=[DescTools rstudioapi]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; }; DetMCD = derive2 { name="DetMCD"; version="0.0.4"; sha256="0jdwwx15k8g3f5izcswsj28nfdw3n50x710mc938031yn7hjmkhg"; depends=[pcaPP Rcpp RcppEigen robustbase]; }; DetR = derive2 { name="DetR"; version="0.0.4"; sha256="0kvmbh7cdy3hmds1znahy1lqhd68y21kmmcki9xbq1b76n4h812n"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; }; @@ -720,6 +747,7 @@ in with self; { DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; }; Directional = derive2 { name="Directional"; version="2.6"; sha256="0qgaxsicrklkarp25k10z8w51gdidl421hnbiiyrjfslxlghqr2n"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; }; + DisHet = derive2 { name="DisHet"; version="0.1.0"; sha256="0j25skxf26zwwrkzjadw6drg5wrhipk0j6wzjl3xzhpfxsz93afp"; depends=[gtools matrixStats]; }; Disake = derive2 { name="Disake"; version="1.5"; sha256="1fw45fmnir6h34jw8917mhyz6cgzbq4ywyyf51qxhm68wgzy9h17"; depends=[]; }; DiscML = derive2 { name="DiscML"; version="1.0.1"; sha256="0qkh0yak1kmzxxx0cqb47zgrj8v2s1d5danpibwwg43j138sb73l"; depends=[ape]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; @@ -735,7 +763,7 @@ in with self; { DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DiversitySampler = derive2 { name="DiversitySampler"; version="2.1"; sha256="1sfx7craykb82ncphvdj19mzc0kwzafhxlk9jcxkskygrlwsxfgg"; depends=[]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; - DoE_base = derive2 { name="DoE.base"; version="0.29"; sha256="013p4y7imf6nb1mq7dx62c0nq5shf1yzdlfbri86icrdm00s63fd"; depends=[combinat conf_design lattice MASS vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="0.30"; sha256="0zpb5cvraznaawkrc7swwvsq363slv0sq1w4rs80jg14sshvr67n"; depends=[combinat conf_design lattice MASS vcd]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.8-10"; sha256="12q3arfm76x9j8qnrmw07jh904qdqz59ga1zk8m3n17prr11vrgb"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; Dodge = derive2 { name="Dodge"; version="0.8"; sha256="1vnvqb2qvl6c13s48pyfn1g6yfhc60ql3vn7yh2zymxcsr1gxgcw"; depends=[]; }; @@ -744,14 +772,15 @@ in with self; { DoubleCone = derive2 { name="DoubleCone"; version="1.0"; sha256="1pba9ypp0n3i2k3ji1x8j7h548pfam9z99hxylcjcxnnvc7xs2fw"; depends=[coneproj MASS Matrix]; }; DoubleExpSeq = derive2 { name="DoubleExpSeq"; version="1.1"; sha256="00xpj5xmpgmvp6h76imkmghrnlfk6c50ydvv0jram6m6ix3z8323"; depends=[numDeriv]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; + Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; DrBats = derive2 { name="DrBats"; version="0.1.4"; sha256="0jzl1jklxsbqf5hv3a71lckk51jxi1lnbk5zmvd4x3y9b9azl2cq"; depends=[ade4 coda MASS Matrix rstan sde]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DstarM = derive2 { name="DstarM"; version="0.2.1"; sha256="166843l9v99rg59iz17qs2gb45qjkxfmg676hd0krg5mhq7xgk8b"; depends=[DEoptim ggplot2 rtdists RWiener]; }; DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; - DySeq = derive2 { name="DySeq"; version="0.13"; sha256="0a1p2l4rpafpbggi3vshcd7xkkn1g5jy93hypgk9g7qskvhzyq0n"; depends=[MASS]; }; + DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; }; DynClust = derive2 { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; - DynNom = derive2 { name="DynNom"; version="4.0"; sha256="16xsgm6nb8qdk5j0srh6w7jda807sh3m73p0sbvvb5h4rf8vdy06"; depends=[BBmisc compare ggplot2 rms shiny stargazer survival]; }; + DynNom = derive2 { name="DynNom"; version="4.1.1"; sha256="1c4hykp8fwr6h5y09m4qs23bmbaj6im2c833mv2ymlhy5bwhmnfi"; depends=[BBmisc compare ggplot2 plotly rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="2.1"; sha256="0dxf16zpj6cyx7afbvr4w4d76w4vshbvvkkqla68dbav0yvy7z7i"; depends=[modelObj]; }; DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; @@ -794,7 +823,7 @@ in with self; { EMSC = derive2 { name="EMSC"; version="0.8"; sha256="1fkwmfiw3cg0wkzcwl68dxzyiz7n35jmvjhq6jxdmb59p10f5z1j"; depends=[pracma]; }; EMSaov = derive2 { name="EMSaov"; version="2.2"; sha256="12y0mj72la4ciwzgr38w9ssik4hixjf5kjsjwrvz6z59hi0ldfly"; depends=[shiny]; }; EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; }; - EMVC = derive2 { name="EMVC"; version="0.1"; sha256="1725zrvq419yj0gd79h8bm56lv2mmk296wq3wapivcy6xn0j97jh"; depends=[]; }; + EMVC = derive2 { name="EMVC"; version="0.3"; sha256="1n7fxmqg8762lc7lg50h6wcrxrrz4nvi0xdaganz84l8vp8w90ms"; depends=[]; }; EMbC = derive2 { name="EMbC"; version="2.0.0"; sha256="11qnln7a36zcrycbs0lz0qdvili25adv0rxdybmb6kk20a6q1lwf"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; ENMeval = derive2 { name="ENMeval"; version="0.2.2"; sha256="1w8mjcmxxkx8lxxzzbjpv1i7cm6l8hhml7ynp80s9yiprr04bq9c"; depends=[dismo doParallel foreach raster rJava]; }; ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; }; @@ -820,8 +849,9 @@ in with self; { EbayesThresh = derive2 { name="EbayesThresh"; version="1.3.2"; sha256="0n7cr917jrvmgwfqki7shvz9g9zpmbz9z8hm5ax7s8nnfzphrh4g"; depends=[]; }; Ecdat = derive2 { name="Ecdat"; version="0.3-1"; sha256="1lvfp2ih8ng3kn3cia687j5fd27iwiak7gk3bhgjp8bnlgblqq02"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; }; - EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.0-3"; sha256="09mrbg99id65y2wnmkpdjn39rd7gffa9rwqymqkcmrlz95pizkrm"; depends=[ggplot2 party raster reshape2 rgdal rkt SoDA sp]; }; + EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1"; sha256="0ww0p4allaaz2zmj88105xr75gffcsycjjyy1ph4m9q7w5sw3c5y"; depends=[d3heatmap edgebundleR ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; }; + EcoIndR = derive2 { name="EcoIndR"; version="1.0"; sha256="0yw27rv0w7z276cbjqqiidf4r5razp0xmam8kl8jd06q6yjpizrw"; depends=[]; }; EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; }; @@ -853,17 +883,21 @@ in with self; { EnvStats = derive2 { name="EnvStats"; version="2.2.1"; sha256="0gjjw2pvqh4m18f7m0pkcr1lsryqmfai1kqc34146h1a4wv7gbdv"; depends=[ggplot2 MASS]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.10"; sha256="0kmyan9jhjsr9f1yhff94yyy56xhm9irfrzm2m4dpf56376m2w8b"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival]; }; + Epi = derive2 { name="Epi"; version="2.12"; sha256="12c5fryvzrl09h2l5lm9s45an6rf600i7gxgw8nddy7f1p9pa9dz"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival]; }; EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.10.0"; sha256="0x0ah55nx68mq05hpp29g9h21is3kx9d84r82j4x4asyqjv92s7v"; depends=[]; }; + EpiCurve = derive2 { name="EpiCurve"; version="1.0-0"; sha256="0y614cghigf126vrk4fdwxik2ax6s5ay391pwb3rwhmll4zflw00"; depends=[dplyr ggplot2 ISOweek RColorBrewer]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.0"; sha256="0hpysjl8wfgylbp4ddxmi5msvlp1w70c6pxggc2bwdgap3s127f3"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive2 { name="EpiEstim"; version="1.1-2"; sha256="0r56iglhkrqvlsf3gbahd544h944fmbyn6jdc113rhjscf6dl605"; depends=[]; }; - EpiModel = derive2 { name="EpiModel"; version="1.2.8"; sha256="1h4mspa7yi2z7rj98nzs3ay2m7gccv7bp63p9sjnqp08pdwk3x5y"; depends=[ape deSolve doParallel ergm foreach lazyeval network networkDynamic RColorBrewer tergm]; }; + EpiILM = derive2 { name="EpiILM"; version="1.1"; sha256="151gx5qr1y8im60pl41pks3w9f6ck4hmwga63f2yq5nb8lk9yn5j"; depends=[]; }; + EpiModel = derive2 { name="EpiModel"; version="1.3.0"; sha256="0v0aw7i4ygr710zhkbw32hxkwa0y5f7qfmfx8q07rcn3k986sj0j"; depends=[ape deSolve doParallel ergm foreach lazyeval network networkDynamic RColorBrewer tergm]; }; EpiWeek = derive2 { name="EpiWeek"; version="1.1"; sha256="19bvjiiz8qn9nlvf3nq238qi1hszlm6asrc03p8ykp6gpl2pi6js"; depends=[]; }; Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; }; EstCRM = derive2 { name="EstCRM"; version="1.4"; sha256="1p99hmmyiy3havj72jd4xksr1j9gfmy0i7z7f3vqs5sqp72alq1k"; depends=[Hmisc lattice]; }; EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; }; + EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.1.2"; sha256="148srhlpzh0scvnkjbkyia1pr8a2ridabm3dahw4zn7p3cryiyb1"; depends=[igraph qgraph]; }; + EthSEQ = derive2 { name="EthSEQ"; version="2.0.1"; sha256="014yhh1msn1vg4ncrs557xrw25vd6jplbsqw2x728hjfivrlwl78"; depends=[data_table gdsfmt rgeos SNPRelate]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.0"; sha256="08m7igh6n8haf8yi8ikrz6ih4agvsnx415kdx4cgjw4xilvgpgqm"; depends=[clinfun data_table plyr shiny VGAM]; }; EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; }; @@ -880,7 +914,7 @@ in with self; { ExpDE = derive2 { name="ExpDE"; version="0.1.2"; sha256="0q95d5gklg834f02b2p252jb3kbbjr4sj3wdak9ljibscnnlckml"; depends=[]; }; ExpDes = derive2 { name="ExpDes"; version="1.1.2"; sha256="0qfigbx06b3p04x5v7wban139mp8hg8x77x6nzwa4v6dr226qbkv"; depends=[]; }; ExpDes_pt = derive2 { name="ExpDes.pt"; version="1.1.2"; sha256="0khw2jhg2vxcivgr20ybvrsqhd8l8bir5xjmr4m44za9nhap43bz"; depends=[]; }; - ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.1.4"; sha256="1n608qz2mj1x36kmbyi7lp0zp744bf9k1zq15yhdv8yy7pcdfl0d"; depends=[CORElearn semiArtificial]; }; + ExplainPrediction = derive2 { name="ExplainPrediction"; version="1.1.8"; sha256="15qqfmgcfc77cygp5zabbf8b5bqs3wyj223waqxrryrnhvzdxxvh"; depends=[CORElearn semiArtificial]; }; ExtDist = derive2 { name="ExtDist"; version="0.6-3"; sha256="1vsxm578bb70wnz3mxm7y1n5vs0x5pby99hvxg5y5ksh2g2ascwa"; depends=[numDeriv optimx]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.5.2"; sha256="010k2ddrrmrv4ayr009sm0vdgql5n1hy2b7rxyggj8iqsm8lkxim"; depends=[Formula]; }; FACTMLE = derive2 { name="FACTMLE"; version="1.1"; sha256="0qz2i0hnn84bpps1h8jmfkgp5p59axr0wayj9dvl839radrvpqvy"; depends=[rARPACK]; }; @@ -905,7 +939,7 @@ in with self; { FDboost = derive2 { name="FDboost"; version="0.2-0"; sha256="10rpi132d16cjr3c08p1py8jjxgf0gk812vi3918sr71m5x0m64i"; depends=[gamboostLSS MASS Matrix mboost mgcv refund stabs zoo]; }; FENmlm = derive2 { name="FENmlm"; version="1.0"; sha256="0mq1qa72hsz3pyqjnbyzcc7shr08cq3hng1fz53mn9mvp11vb135"; depends=[MASS Matrix numDeriv]; }; FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; }; - FFTrees = derive2 { name="FFTrees"; version="1.1.8"; sha256="0zslr3k3wjvin14i7y2qfc5acf864kp9ih52bq0sb34590papy18"; depends=[circlize MASS rpart]; }; + FFTrees = derive2 { name="FFTrees"; version="1.2.2"; sha256="1s42k48fqkpdjwqhbl7k5hci12p5zz681cys462g1ddc21bxp0gz"; depends=[circlize e1071 glmnet igraph MASS mlbench randomForest rpart snow snowfall yarrr]; }; FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; }; FGN = derive2 { name="FGN"; version="2.0-12"; sha256="0jxawb4wm1vcp0131mdnc0r24dw8sd29ih0fc2wh6ahy7mxzajqn"; depends=[akima ltsa]; }; FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; }; @@ -920,7 +954,8 @@ in with self; { FLLat = derive2 { name="FLLat"; version="1.2"; sha256="0kdc269vsc94pi00n55196a20qiv6c5pxf2xrh34w4x2vkn5mbxz"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="5.2"; sha256="1px9n0rnjg32ngy8bs0z1jzmspnkn15q273w74vxjykqfd5xayfd"; depends=[Rcpp RcppParallel]; }; - FLightR = derive2 { name="FLightR"; version="0.4.5"; sha256="0kyvnqjdr82x82l3isqw4kr31x0a15nzgmlggxbv9rjk3pxjnfbx"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FLightR = derive2 { name="FLightR"; version="0.4.6"; sha256="0q1azhpdkasjsca5z4p0gnp5iirs6f9dyg6pn8269x7k1mw0pib4"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; }; + FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FME = derive2 { name="FME"; version="1.3.5"; sha256="1r1mb61hylsgcryac35bz1pzfcw27gzpvfwkkf0sh754ya6xh69n"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; }; FMP = derive2 { name="FMP"; version="1.4"; sha256="0w11a78nz4n7zih9h00xkv7prsy9hlxphbpa7hpnbvq9r98g08qm"; depends=[]; }; FMStable = derive2 { name="FMStable"; version="0.1-2"; sha256="00viigpqfbqc4hyl9cwicbwqf2ksjak28qrqaa16jhbqz93j4fck"; depends=[]; }; @@ -936,10 +971,12 @@ in with self; { FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="2.2.1"; sha256="065iywjay4a06w97lg2z98qq0j60flq4srchyg7c2a3pjrwppqc2"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; FREddyPro = derive2 { name="FREddyPro"; version="1.0"; sha256="0h2rdydcx9pwjl1zxghzb5vqynrwdkscyq6c9adjgz4dngfwyzsw"; depends=[dismo ggplot2 lubridate raster RColorBrewer sp]; }; - FSA = derive2 { name="FSA"; version="0.8.11"; sha256="0pwqdw7kq2fkxqwwazjcx3g9y6cwrkanfv2j58q2hhjzrhyp08qs"; depends=[car dplyr epitools gplots plotrix plyr sciplot]; }; - FSAdata = derive2 { name="FSAdata"; version="0.3.5"; sha256="0cj4pvhb52zpxi5r3ffkpmwf420waw5kczfw9p9jv6d5byhi6jd5"; depends=[]; }; - FSInteract = derive2 { name="FSInteract"; version="0.1.1"; sha256="0hlmz0sc4l9vmb4b2y3j95gh39m1jqrp9bvqsjjqdr0ly1lb7mvm"; depends=[Matrix Rcpp]; }; + FRK = derive2 { name="FRK"; version="0.1.1"; sha256="1zp3ms68fd504wni7i2yddiagh34na78nbziz557n3ylxvpwllh4"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime]; }; + FSA = derive2 { name="FSA"; version="0.8.12"; sha256="0byhvv32ayyq8x4kidpdapp41h0jvrp61pjdmpc4whkm9978vb87"; depends=[car dplyr epitools gplots plotrix plyr sciplot]; }; + FSAdata = derive2 { name="FSAdata"; version="0.3.6"; sha256="0r4g3s4a7hizxj7zlp8wb5sldnx6kc99vak8ww715bhzpzq40qf8"; depends=[]; }; + FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; FSelector = derive2 { name="FSelector"; version="0.21"; sha256="0qk54b4svihwcmfdp5k8pcvy60568zlg4z2qqiawr7h4inzmvrlk"; depends=[digest entropy randomForest RWeka]; }; + FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.2"; sha256="1qisnap16ish55m8k3b37n2i9nvy8wb19wy9i0bnpf0px75bxkmb"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; }; FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; }; FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; }; FUNTA = derive2 { name="FUNTA"; version="0.1.0"; sha256="02yxz95s2hs26mfmgwhv5d54yyjz0aczjpnay8b4gpzbpd6aci61"; depends=[]; }; @@ -947,17 +984,18 @@ in with self; { FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; FactoClass = derive2 { name="FactoClass"; version="1.1.3"; sha256="1vwjxzz8cdvshslx51vnvgybvmki2x3zfax2q6czxl8kacijdh9n"; depends=[ade4 xtable]; }; + FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.0"; sha256="10yim7xvzizr383hygs4s2f59ipbl4sj2i85g55zw7j5crangql3"; depends=[FactoMineR rmarkdown rrcov]; }; FactoMineR = derive2 { name="FactoMineR"; version="1.35"; sha256="1a8mnyjh3915h3n46p6pph7nv9chxj02pjsyjv2ic78xavz7dqdg"; depends=[car cluster ellipse flashClust knitr lattice leaps MASS scatterplot3d]; }; - FactoRizationMachines = derive2 { name="FactoRizationMachines"; version="0.1"; sha256="0iycm1ih0947b8qsm1p3x42g088pk3vvayb96irmj0cd2a0fix6c"; depends=[Matrix Rcpp]; }; + FactoRizationMachines = derive2 { name="FactoRizationMachines"; version="0.11"; sha256="0k9c7byyn14mqrsxa03d4pf4dlnm4zxryk3n15rr9w9mbmrhidcy"; depends=[Matrix Rcpp]; }; FactorsR = derive2 { name="FactorsR"; version="1.1"; sha256="06193gw4q9yvhmgzlv8w2xi9f418cjkn9jx72l41426wapjhygdy"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="1.0.5"; sha256="1jqk80raqf3kxympkqfayzwwc61yipzh4cbklrb9kmay5ryg4gj9"; depends=[colourpicker FactoMineR shiny]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; - FamEvent = derive2 { name="FamEvent"; version="1.2"; sha256="1z611g6nginmga2mzkjlplwmfiiply2wwnbn6icsn412wzj8a606"; depends=[kinship2 MASS survival truncnorm]; }; + FamEvent = derive2 { name="FamEvent"; version="1.3"; sha256="0jf4ph9mskycyckyg9biy0h1zk5q6nvj8669zfh8nfnnn2yh3s48"; depends=[kinship2 MASS survival truncnorm]; }; Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FastBandChol = derive2 { name="FastBandChol"; version="0.1.1"; sha256="1hlgipn792vaylvc0r44clkjcnkns6p241a1fs8sb3gpq81naazk"; depends=[Rcpp RcppArmadillo]; }; FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; FastHCS = derive2 { name="FastHCS"; version="0.0.5"; sha256="02ds9syqh8wpjrqibdv3kqxcyijclm572daqrj262b4b6211v46x"; depends=[matrixStats Rcpp RcppEigen robustbase]; }; - FastImputation = derive2 { name="FastImputation"; version="1.3.1"; sha256="05rs5mzb7aww7x06zqn4q053jqxbrc185ra11brm0xkb02cc1dih"; depends=[]; }; + FastImputation = derive2 { name="FastImputation"; version="2.0"; sha256="0zhin8000c78kba6zly9mvpxdxx68kcsh2hn697pxkl73wqsz3p5"; depends=[Matrix]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastPCS = derive2 { name="FastPCS"; version="0.1.2"; sha256="1lqb6g65vna2p7kc2y4kc5piy3280nlxl41bdkxkng2icmq14l58"; depends=[matrixStats Rcpp RcppEigen]; }; @@ -986,6 +1024,7 @@ in with self; { FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; + FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; }; FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-3"; sha256="0766ghwbdd7r4yj5xf31hnknn775ziw1hhrn13wf8bibyd8blz70"; depends=[nlme]; }; FlowScreen = derive2 { name="FlowScreen"; version="1.2.1"; sha256="0wdlw8wz10jb0ablfkpjmhkz31h7c19blpzifg1kknknvg8wmbkd"; depends=[changepoint evir zyp]; }; Flury = derive2 { name="Flury"; version="0.1-3"; sha256="105fv9azjkd8bsb9b8ba3gpy3pjnyyyp753qhrd11byp3d0bbxy0"; depends=[]; }; @@ -993,7 +1032,7 @@ in with self; { ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; }; ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; }; - ForestTools = derive2 { name="ForestTools"; version="0.1.0"; sha256="0jvsz96ll3apl4br5m8cbs24yds05xh93brvrib6yiwcss55avf1"; depends=[APfun imager maptools raster rgdal rgeos sp TileManager]; }; + ForestTools = derive2 { name="ForestTools"; version="0.1.4"; sha256="0czvslmhz5syvd8h5zz6wl3nfp2dpyx3wf9x1d1hkgfgxkkl6f1y"; depends=[APfun imager raster rgdal rgeos sp TileManager]; }; FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; }; Formula = derive2 { name="Formula"; version="1.2-1"; sha256="02in5325zzrqbhlygx6s0dinj6ymw845q70y56frqacv25ayzcax"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; @@ -1012,11 +1051,12 @@ in with self; { FunctionalNetworks = derive2 { name="FunctionalNetworks"; version="1.0.0"; sha256="071hjgiccbrf1gxrh7niw2w1p6vgc77qvrildi59xhk53qcwzqdp"; depends=[Biobase breastCancerVDX]; }; FusedPCA = derive2 { name="FusedPCA"; version="0.2"; sha256="0z4kvm6mn11fmc8w62aky2binjdcgrw4ij5vg65sb55da9s8d2kd"; depends=[genlasso]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.0"; sha256="1n2m6p03bfip2fxfg8v4k43zgv7lcwwgv4myw2rj46djfwl2l9i7"; depends=[FuzzyNumbers MASS]; }; - FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.8.0"; sha256="1rpmwyqgdbc4hcx375m6j6djbhm4ggb6j9sni2dq8rwza96qv5zb"; depends=[]; }; + FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.0"; sha256="02c08rzmmdd2l84jlzb0vck9m08afm7j599n0g09hffflcrb3fz7"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-3"; sha256="1c7yynrz0vfvan9mfin2vsrkhhi3sy8c5nya7l8hja0nh1a4bzki"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-1"; sha256="15i0chp43y8xfyzkjrbljmdvgjjx9w1l5ayhvavk9y85pwb147b8"; depends=[]; }; - FuzzyR = derive2 { name="FuzzyR"; version="2.0"; sha256="1li54ad0lqmmdsr9pcp56d2n8ki6hzdljy8l3lzhrsjmii7ycasw"; depends=[plyr shiny]; }; + FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="1.0"; sha256="1mqpdii0lf1p19kmzw93bzqbfjx2jzbphd0aacyzzai72vzx6aj1"; depends=[FuzzyNumbers]; }; + FuzzyR = derive2 { name="FuzzyR"; version="2.1"; sha256="08mhwzyksw0snxxcwn2kg62ya8smfvrls30znqhmnbkn5ijz0642"; depends=[plyr shiny]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.2"; sha256="01rdvsvdfyg8cz6rl1kzwzg9ns5zmikmb7ljlavvzcbg4i1vliqq"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; @@ -1026,13 +1066,15 @@ in with self; { GA4Stratification = derive2 { name="GA4Stratification"; version="1.0"; sha256="0li23mrxjx72fir16j3q06fa32cicck4pfc30n0dy2lysf81m9gs"; depends=[]; }; GABi = derive2 { name="GABi"; version="0.1"; sha256="1zmiaqbd1jrpiz9hk16s8rggcpl3xyyhjkkdliymx2p42vy5b5mf"; depends=[hash]; }; GAD = derive2 { name="GAD"; version="1.1.1"; sha256="0lyrw0d7i7yn1wkqlbf3rg3dnijfwsjn3kdbsg19hmvwq6qpsak2"; depends=[matrixStats R_methodsS3]; }; + GADAG = derive2 { name="GADAG"; version="0.99.0"; sha256="1ycg48idrq2yrk1fxs16yl5wwg3kbfki8xppmh311rrzf75c6z4g"; depends=[igraph MASS Rcpp RcppArmadillo]; }; + GADMTools = derive2 { name="GADMTools"; version="2.0-1"; sha256="1i0kl7wxi9vfr6rhry64b2yvjv47ap1m3bglmc2anrz2xmj3af7v"; depends=[classInt dplyr ggmap ggplot2 gridExtra jsonlite lattice maptools RColorBrewer rgdal rgeos scales sp stringr]; }; GAIPE = derive2 { name="GAIPE"; version="1.0"; sha256="04iarbwxrhn48bk329wxis7ifzndi67kpjx6dcakawkh3g2mzsfz"; depends=[]; }; GAMBoost = derive2 { name="GAMBoost"; version="1.2-3"; sha256="0450h9zf12r524lxk1lrv9imvvkk6fmyd3chnxp18nnvys7215pv"; depends=[Matrix]; }; GAMens = derive2 { name="GAMens"; version="1.2"; sha256="1x1q6a5p2lsx0gbfm976ps4braqaxa26ii6g3iag9ssafyhb0r1f"; depends=[caTools gam mlbench]; }; GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; }; GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; }; GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; }; - GAS = derive2 { name="GAS"; version="0.1.5"; sha256="14n973bks28chxxlidz578359nh8kd2jjp32k1fp2r8qfddsk21i"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; + GAS = derive2 { name="GAS"; version="0.1.9"; sha256="125gfh561p02jlvk6sj465v50yiysnxz900c1xsmrhnvkfmgl7br"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; }; GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; }; GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; }; GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; }; @@ -1040,27 +1082,27 @@ in with self; { GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; }; GCalignR = derive2 { name="GCalignR"; version="0.1.0"; sha256="0prky8n2j6xvq4srxcp08k4wlikg7hhj78mw7fjqbf01sl0zhwz5"; depends=[ggplot2 readr reshape2 stringr]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; - GDAtools = derive2 { name="GDAtools"; version="1.3"; sha256="1av29mllix0az4n85vxh1344j6jmy103hd78ibjwxalm620rp7ns"; depends=[FactoMineR]; }; + GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.2"; sha256="1rx6kjh7kmyycqapvbizcxkcfp09qvqv7k8f25v333sxkacpz6p5"; depends=[plyr TimeWarp]; }; - GDINA = derive2 { name="GDINA"; version="1.2.1"; sha256="1ay3s4r8v4zzggmxbq7m1kppb2bpa8mcgsiaak82955l19k40dy4"; depends=[alabama data_table ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp]; }; + GDINA = derive2 { name="GDINA"; version="1.4.2"; sha256="14686mkyxk7gjp0ivz1wkmry15qrf50fcwwza1j98791yjkqsbyf"; depends=[alabama data_table ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.0.0"; sha256="0fs5gamfpv5z4p92x76gy55zmf0pmh5cdhgnp9dnh58x0d9mij5y"; depends=[gee]; }; GENEAread = derive2 { name="GENEAread"; version="1.1.1"; sha256="0c3d76yl8dqclk8zhhgrd6bv6b599vkpbyg3hjspb6npdw6zs6k8"; depends=[bitops]; }; GENLIB = derive2 { name="GENLIB"; version="1.0.4"; sha256="1gl8qsgm9iy57rlajgc47lfxah52jsg7lpj131a6813kj0c639l7"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; }; - GEOmap = derive2 { name="GEOmap"; version="2.3-8"; sha256="14nar0djn8jzcyv0aij79xr3iqbgllrpcnfazi865plfa5ah7k9v"; depends=[fields MBA RPMG splancs]; }; - GERGM = derive2 { name="GERGM"; version="0.10.0"; sha256="0fg984d553zfnnv00flmlzib4zjvgp33lgmbczvr4wssj4rsbpj7"; depends=[BH coda ggplot2 igraph plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; + GEOmap = derive2 { name="GEOmap"; version="2.4-0"; sha256="0jhzsp5f427r652mnaw3zg0vv13jaz11bfbbxppmxvya6k2jimyg"; depends=[fields MBA RPMG splancs]; }; + GERGM = derive2 { name="GERGM"; version="0.11.2"; sha256="0vvvbb7y5lqa60n7w14gm8r7gwgah593w63162amjxmdk9jir9bi"; depends=[BH coda ggplot2 igraph matrixcalc plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; }; GESE = derive2 { name="GESE"; version="2.0.0"; sha256="04gd9xplwk5kknwikn5c8wa01bbc10ijfj08gpycf0x0q54szf8y"; depends=[kinship2]; }; GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; GEVStableGarch = derive2 { name="GEVStableGarch"; version="1.1"; sha256="1iypv0k4cbvsdyglgvf7y52sqvl5qcin627pjqwq42kisqynm8d7"; depends=[fExtremes fGarch Rsolnp skewt stabledist timeDate timeSeries]; }; - GEVcdn = derive2 { name="GEVcdn"; version="1.1.4"; sha256="13p6wi72z6j7iyp5hv16ndvsq6jf6hdqgcmf1i8g713gn73l79kj"; depends=[VGAM]; }; + GEVcdn = derive2 { name="GEVcdn"; version="1.1.5"; sha256="0nqym5jqgshx6ad4k4nwain6lnhx5y7s3b10f2xmcn93287p3rji"; depends=[VGAM]; }; GEint = derive2 { name="GEint"; version="0.1.2"; sha256="12jkrflv9p05bnsx5xqyr55c18q1vrs1wlcni38zyppd334yyiyh"; depends=[geepack mvtnorm nleqslv pracma rje speedglm]; }; GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; - GFA = derive2 { name="GFA"; version="1.0.0"; sha256="1mgcgdypfpd3i5n5kgk162p1jp9gfz1h7h3rlzrw9srsbc6dza97"; depends=[]; }; + GFA = derive2 { name="GFA"; version="1.0.1"; sha256="073mwbrvvacrvqw4mwm13wd4rh3wlvwxkakal0k9xwxi5q9kl2rs"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.2.2"; sha256="1llz22cqp26336ybfkmn98v80zl09hpjx34f9c5bf39lc6w1645h"; depends=[magic MASS Matrix plotrix plyr]; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; }; GGIR = derive2 { name="GGIR"; version="1.4"; sha256="0vg7kpz8cx12jc06z8hjgss6n20z9h262z4rki4mnmllv2hmjqx2"; depends=[data_table]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; - GGMselect = derive2 { name="GGMselect"; version="0.1-11"; sha256="1ir3zyi9xxq9aq1zxl506x1fwxsv7rd350k461l9lc2r5338xrgh"; depends=[gtools lars mvtnorm]; }; + GGMselect = derive2 { name="GGMselect"; version="0.1-12"; sha256="1vjzmnnvnckr8s0badqm3l15arsa31fwg4wq6c2wx3g0hi1nzxxs"; depends=[gtools lars mvtnorm]; }; GGally = derive2 { name="GGally"; version="1.3.0"; sha256="12ddab0nd0f9c7bb6cx3c22mliyvc8xsxv26aqz3cvfbla8crp3b"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape]; }; GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; }; GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; }; @@ -1069,9 +1111,11 @@ in with self; { GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; GLDEX = derive2 { name="GLDEX"; version="2.0.0.5"; sha256="0mr8qhccp8dndp43v8ym22f4djrjr8qcxbv61lwabk2462llwln6"; depends=[cluster]; }; GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; + GLIDE = derive2 { name="GLIDE"; version="1.0.1"; sha256="02pmn0ydrmblgchz189avlrz3zaz0qfhy75d945yphpmvjf9f9m5"; depends=[doParallel foreach MASS]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; GLSME = derive2 { name="GLSME"; version="1.0.3"; sha256="0flja5gk25k4z9hwskvdw4c1f88scc47xvc1l3d2447fkfrb0bwc"; depends=[corpcor mvtnorm]; }; + GMAC = derive2 { name="GMAC"; version="1.0"; sha256="0936j60cf7jvy8frr8p8ysbg5if14r0wm896aq89ivxfypvw7n1g"; depends=[qvalue]; }; GMCM = derive2 { name="GMCM"; version="1.2.4"; sha256="1y0yr6i4l28qw22drca7r4mzqjfbpm3jdssfb7p8pc664g6vmm81"; depends=[Rcpp RcppArmadillo]; }; GMD = derive2 { name="GMD"; version="0.3.3"; sha256="0hdya8ai210wxnkfra9bzyswk3gib5fm53fs61rh0nsmg3ysdga6"; depends=[gplots]; }; GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; }; @@ -1088,9 +1132,10 @@ in with self; { GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; GPareto = derive2 { name="GPareto"; version="1.0.3"; sha256="1krvnmyn0yw65fn92lsxw0y3pxzpkx6b5dsgvrm47gyaphpynk4s"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud]; }; GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; }; + GPoM = derive2 { name="GPoM"; version="1.0"; sha256="14h9g2rg5yzw68hg2a3s2lp19ilq7dl1k3cjnd9k516b5gdm2izl"; depends=[deSolve rgl]; }; GPrank = derive2 { name="GPrank"; version="0.1.2"; sha256="0z9xhydnq04p872zl7glxhndmijjihfgffl6bijc9a0rs95zaacd"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; }; GPseq = derive2 { name="GPseq"; version="0.5"; sha256="0k5xif44qk2ppvcyja16xshmfciq1h84l1w6d8dfkyryfajbc8ai"; depends=[]; }; - GPvam = derive2 { name="GPvam"; version="3.0-3"; sha256="0dmws29ahbjhx82s2i8jfzhl8pp5q201a592w90jvhwy2bnm1ywk"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + GPvam = derive2 { name="GPvam"; version="3.0-4"; sha256="1vqvm9647jnw91vpf4dhjjp9rc05n5k6qgzilfpmcg4a7zzi917k"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; GRANBase = derive2 { name="GRANBase"; version="1.2.1"; sha256="1fxbgl7z61qdfg0lcjylc00wr819kg9kycc42gsjl1gxxy94b433"; depends=[hwriter switchr]; }; GRAPE = derive2 { name="GRAPE"; version="0.1.0"; sha256="0kcyz8x6yzq83hcwdlx7yw5jpww819f9d1hax19vn31ccq71xkyw"; depends=[]; }; GRS_test = derive2 { name="GRS.test"; version="1.0"; sha256="1igyb3rma1v2arx1k16fanvzmlywx0n9lf5jz69vnf6z2qmqvrg5"; depends=[]; }; @@ -1100,11 +1145,11 @@ in with self; { GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; - GSED = derive2 { name="GSED"; version="1.1"; sha256="0r0bgfmlxb81am34gm5c1bxfwkjl82f51ck1lqf7jwc7w08d75az"; depends=[memoise rootSolve survival]; }; + GSED = derive2 { name="GSED"; version="1.3"; sha256="003n4mqch9kb7d0jpna3f8yg1ajbn6abrpiz4r8slhl3nps09yn4"; depends=[memoise rootSolve survival]; }; GSIF = derive2 { name="GSIF"; version="0.5-3"; sha256="1cvdgdnsddl1z6qmxwdglvrf3p8ph8cf3ablnxspn4k70cpiwq3c"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="0.1"; sha256="1bw249b3a58d9q8cj91w9syyghf6sy8xqnx2jawp83qp8lfbix5x"; depends=[MASS psych]; }; - GSODR = derive2 { name="GSODR"; version="1.0.1"; sha256="14rc9gs4375mwk5gzz17iadb5gnphw411rh4sxhg8y48gj6drlqs"; depends=[curl data_table dplyr fields plyr purrr R_utils readr rgdal sp]; }; + GSODR = derive2 { name="GSODR"; version="1.0.2.1"; sha256="08hgm3yafmy0jy2d8g2l30c8mw9rq36pbv5vp5cgv4inwsgazl43"; depends=[curl data_table dplyr fields plyr purrr R_utils readr rgdal sp]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; }; @@ -1117,7 +1162,7 @@ in with self; { GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.1"; sha256="0c3mcvmvxvgibja6rb8j2mhmmjny825wgvi1dw0pz8pq1kg1q0ay"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.2"; sha256="1i8f2a43vn7zjsfb108ckjhi23m93mbm3lc7w7w6grp4ny98xr6g"; depends=[doParallel foreach]; }; - GWmodel = derive2 { name="GWmodel"; version="2.0-1"; sha256="1030qkrwn4b40553j80ignq2dvrnsi1p6wvhq7iq7nmc9jcil1wz"; depends=[maptools Rcpp RcppArmadillo robustbase sp]; }; + GWmodel = derive2 { name="GWmodel"; version="2.0-3"; sha256="0sbxhslqj86lbbwj20sqavaypgqp1d5g29h74lwh5dz87ymhs244"; depends=[maptools Rcpp RcppArmadillo robustbase sp]; }; GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; }; GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; }; GameTheory = derive2 { name="GameTheory"; version="2.5"; sha256="05isd08z7k52nvic52gnlmnqvvrxxipcn2njfiz3kp105wvdw1rp"; depends=[combinat gtools ineq kappalab lpSolveAPI]; }; @@ -1142,21 +1187,21 @@ in with self; { GeneReg = derive2 { name="GeneReg"; version="1.1.2"; sha256="081qc66mb17dwk886x9l2z4imklxnfs02yqql0ri9c47bpsga7wp"; depends=[igraph]; }; Geneland = derive2 { name="Geneland"; version="4.0.6"; sha256="0xm5k0ihmg8j0cx2as1h8lgm1g0vrfdbpb0nacmdqdhafaj03iyz"; depends=[fields RandomFields]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; - GeneralTree = derive2 { name="GeneralTree"; version="0.0.1"; sha256="0wlhpxky4vckmcg0imvcxsg2rg2pbrh5822lpkdp28aj7b4s7wqv"; depends=[R6]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-1"; sha256="0rx07z5npawvsah2lhhkryzpj19sg0sl0w410gmff985ksdn285m"; depends=[DistributionUtils RUnit]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; - GenomicTools = derive2 { name="GenomicTools"; version="0.2.3"; sha256="1ga2myi2y5rpab0v58y1ndfqrxmbl1wdr3d0s8215apwiax4rfm4"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; + GenomicMating = derive2 { name="GenomicMating"; version="1.0"; sha256="16ky71vnrnarvws1bhgq8ymgdqmb8gnfs9cil29cgm88kp0ra36b"; depends=[Rcpp RcppArmadillo]; }; + GenomicTools = derive2 { name="GenomicTools"; version="0.2.4"; sha256="1r1d36ik0xrpznz19jrw4m7xf3xsqhx9vwsnal8k030k6vjip82d"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; }; GeoXp = derive2 { name="GeoXp"; version="1.6.2"; sha256="18wdmdwb79ipdjdii068dz9f55b5ldxn95g5q6jcxsqwp0wldvw8"; depends=[KernSmooth quantreg rgeos rgl robustbase spdep splancs]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; - GerminaR = derive2 { name="GerminaR"; version="1.0"; sha256="10zwa5grkz95q69l8yvvcj071lql7hh7f7cbmjxl1vnsyanlan4x"; depends=[agricolae assertthat dplyr ggplot2 gtools magrittr shiny tidyr]; }; + GerminaR = derive2 { name="GerminaR"; version="1.1"; sha256="1ijx2bd0fpki3pqm9grksc60f43qg9y5412mwd847xqqjpc1mxm4"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tidyr]; }; GetHFData = derive2 { name="GetHFData"; version="1.2.4"; sha256="0bhrxxrmhmvpks81n9xxzcwgp370ym7sxz6x7cnv50gzyd1yz9sm"; depends=[curl dplyr lubridate RCurl readr stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; GetTDData = derive2 { name="GetTDData"; version="1.2.5"; sha256="0ghi9iram9d67vs12hkw362qnvmk1lk72pjgmx118i4yxh5gvvw3"; depends=[curl RCurl readxl stringi stringr]; }; - GetoptLong = derive2 { name="GetoptLong"; version="0.1.5"; sha256="109x6m904x1cnqb9d0s4yglx6lfllhpdzl6is5d559bfsb990vwd"; depends=[GlobalOptions rjson]; }; + GetoptLong = derive2 { name="GetoptLong"; version="0.1.6"; sha256="1d98gcvlvp9nz5lbnzr0kkpc2hbkx74hlhrnybqhg1gdwc3g09pm"; depends=[GlobalOptions rjson]; }; GiANT = derive2 { name="GiANT"; version="1.2"; sha256="0h9jx2vpgpzlinf6v9mxj260r22nlqml8xnd2jknw36j5imim57w"; depends=[]; }; GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; }; GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; }; @@ -1166,16 +1211,16 @@ in with self; { Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; }; GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; - GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.10"; sha256="0vkfr29q92g02138g2iscn95g3dc3shvzlmrh502fw89asm7kh57"; depends=[]; }; + GlobalOptions = derive2 { name="GlobalOptions"; version="0.0.11"; sha256="15zayfijpbp1xqzykbhkw97qm70kcvjzqh6sz71rb91jdv5zi01x"; depends=[]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.3"; sha256="0b2ijr9zlsp1287da3h9qm5cm17xk8zm8cdcj6d4kz0ivgg444py"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; Gmisc = derive2 { name="Gmisc"; version="1.4.1"; sha256="1xdgmvzixc03qz34l57gy85w711iimmfqn6w20rr5b67m5m63drz"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-0"; sha256="17jd1dqwpki4mmzk695g25vvfwvkp4k7jhvw06dmdmn5j09hw373"; depends=[KernSmooth]; }; GofKmt = derive2 { name="GofKmt"; version="1.0"; sha256="1b91js02kam515p7s0c6v63rl31wk16bvkr4f4z25wa5nb8g8p81"; depends=[Rsolnp]; }; GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; }; - Grace = derive2 { name="Grace"; version="0.5.1"; sha256="1bx2bqfxxgq5dq9825iad5zgjxx3b2lgw18lzc1fxq5rnximsh08"; depends=[glmnet MASS scalreg]; }; + Grace = derive2 { name="Grace"; version="0.5.3"; sha256="0r41zvgdd5rqm15axqqssik6plwy7snpgw8m32labkfn3f0pp7n0"; depends=[glmnet MASS scalreg]; }; GrammR = derive2 { name="GrammR"; version="1.1.0"; sha256="1rwvgznfxp7d3rzymyljj3pn3z3ggia1bhi4nvpgd79qd4cifi2g"; depends=[ape cluster GUniFrac gWidgets gWidgetsRGtk2 MASS rgl RGtk2]; }; GraphFactor = derive2 { name="GraphFactor"; version="1.1"; sha256="1jxibd2d5b6vlq27m9ppmm96wsnkqn4pz66n9pwdl8wg2v85npw5"; depends=[igraph]; }; - GraphKit = derive2 { name="GraphKit"; version="0.4"; sha256="12h7p1ka4036d3c1vri014jci02zkjgira6rk8f1mcrv94sywinc"; depends=[Rcpp RcppArmadillo]; }; + GraphKit = derive2 { name="GraphKit"; version="0.5"; sha256="1ip0rkrwxpjcd9mhz2z8n7lwdrjj1idymsafm8aac1hfbxr6c0xz"; depends=[Rcpp RcppArmadillo]; }; GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; }; GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; }; GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.0"; sha256="00a2lcqrj17ckw4npkvm3sxydfn2lyvs7pzpccy3xnzrr006ibsx"; depends=[rJava]; }; @@ -1185,7 +1230,7 @@ in with self; { GroupSeq = derive2 { name="GroupSeq"; version="1.3.4"; sha256="0m127793gh00spj2ghapmysvf3dbxhpf2jlms3xxrflh7ajrmy5m"; depends=[]; }; GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; }; GrowingSOM = derive2 { name="GrowingSOM"; version="0.1.1"; sha256="0pzhf27kk9nc73w6wp0qd50i7hk7904y90l2ppdgy738z9gcbz4i"; depends=[plotrix]; }; - GrpString = derive2 { name="GrpString"; version="0.1.1"; sha256="0kqz2m6ycj83s5kcgbf7l6cpfgfrza7b0y23cgljf952pys2ndys"; depends=[plyr]; }; + GrpString = derive2 { name="GrpString"; version="0.3.1"; sha256="0j2xyil4z3dcl306ralf277ixypk0i0dfysbbl5j22ykgg21lbfd"; depends=[plyr]; }; GsymPoint = derive2 { name="GsymPoint"; version="1.1.1"; sha256="1fg8vqd86kcpciphmlcxlm0rk01iza7md5y8kcxp9i732n4zn7r8"; depends=[ROCR Rsolnp truncnorm]; }; GuardianR = derive2 { name="GuardianR"; version="0.8"; sha256="07bg7wz7d2rgjkw5ldzi5p7nd4ch39m6ql5w4sqnvds4r08jspj9"; depends=[RCurl RJSONIO]; }; Guerry = derive2 { name="Guerry"; version="1.6-1"; sha256="1hpp49w2kd1npsd709cwg125pw6mrqxfv2nn3lcs1mg2r49ki2bl"; depends=[]; }; @@ -1223,10 +1268,10 @@ in with self; { HMMpa = derive2 { name="HMMpa"; version="1.0"; sha256="14r2axg42by49qm6avgv7g3xnc29bxlrni5fhc5vdz0wygkcrqhn"; depends=[]; }; HMP = derive2 { name="HMP"; version="1.4.3"; sha256="15fsyk61y141wdkc5cjrw05gc5kzl2a8cmk2n54c8gmhhjbjy692"; depends=[dirmult doParallel foreach gplots MASS]; }; HMPTrees = derive2 { name="HMPTrees"; version="1.3"; sha256="1q0zfwhzfr45mykql8hsp6pzkfhcplr7gkq7dbd8xa97wxsf63yd"; depends=[ape dirmult doParallel foreach HMP]; }; - HMR = derive2 { name="HMR"; version="0.4.1"; sha256="1acaph5q6vgi4c7liv7xsc3crhp23nib5q44aszxhramky0gvaqr"; depends=[]; }; + HMR = derive2 { name="HMR"; version="0.4.2"; sha256="0rbpghih99avaq803f6hb66pfbqgzh1i2yaqs0mhbj61yyjzyb7b"; depends=[]; }; HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; }; HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; }; - HRM = derive2 { name="HRM"; version="0.5.0"; sha256="0xppx5ip0qhrfhri7yzqmkqrr6lf1a4pmk2lc5vxmsxdfs273y9r"; depends=[ggplot2 MASS matrixcalc plyr reshape2]; }; + HRM = derive2 { name="HRM"; version="0.5.1"; sha256="0ng9p9x6ka4cdi53vbzy298y9ahdjr037y5wyzlmmhm2cy182wby"; depends=[ggplot2 MASS matrixcalc plyr reshape2]; }; HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; HSAR = derive2 { name="HSAR"; version="0.4.0"; sha256="1k40hh546hrdm2yh64l51sky17mnmkzckb7l3bnkpw495rsk73g2"; depends=[Rcpp RcppArmadillo spdep]; }; HSAUR = derive2 { name="HSAUR"; version="1.3-7"; sha256="16qmsyin8b7x9q3xdx74kw6db6zjinhxprp6pfnl6ddwxhz3jzzf"; depends=[]; }; @@ -1242,6 +1287,7 @@ in with self; { HWEBayes = derive2 { name="HWEBayes"; version="1.4"; sha256="1rbffx6pn031a278ps9aqxcaq8yi73s5kf60za143ysbfxv9dphw"; depends=[MCMCpack mvtnorm]; }; HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HWxtest = derive2 { name="HWxtest"; version="1.1.7"; sha256="030fl88bj0g7y9b9kd56bnxh0cad6y84bnmvsgwlanb51n3ggz3w"; depends=[]; }; + HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; }; HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; }; Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; }; @@ -1251,7 +1297,7 @@ in with self; { HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.5.6"; sha256="1zpba8l8fjc7ncrw0virfv1s9zaa4xsyn63jiay8ivik98siqhkb"; depends=[mice]; }; HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; - HelpersMG = derive2 { name="HelpersMG"; version="1.8"; sha256="1lw0p02rzb4b9b66435w8dr058bfzpcygfgi75av28lrc75c6skv"; depends=[coda]; }; + HelpersMG = derive2 { name="HelpersMG"; version="1.9"; sha256="10icxks0b2sq7s2g7m4vs8857mlw5hkpnmphy7dfd1r8cbf7y7sh"; depends=[coda]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HiCfeat = derive2 { name="HiCfeat"; version="1.2"; sha256="01b8isvn4my41n3608k80d38vgd3waq7rxsx1v4p0rl1f3pxn7dn"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; }; HiCglmi = derive2 { name="HiCglmi"; version="1.0"; sha256="01v7g9h86xb4i8gc2rsyyx952mqafyapydhyyik098s1war4hkf9"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; }; @@ -1269,7 +1315,7 @@ in with self; { HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.2.55"; sha256="14hdnpiw0ccmzb0lj9gwn92hzwwmlpgrxv7mj8kwp89n7kqccvl7"; depends=[jpeg plyr png RColorBrewer]; }; Hmisc = derive2 { name="Hmisc"; version="4.0-2"; sha256="1lg9k0kj803wsm3h0a991q9l2lrgsqryzfv2z79b88kjbfapqpqr"; depends=[acepack base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; - HoRM = derive2 { name="HoRM"; version="0.1.0"; sha256="07vq8v1pdmm35sna9yz7n6al4g9mf45sx1rbzgsymyjac38zw62k"; depends=[ggplot2 MASS orthopolynom quantmod]; }; + HoRM = derive2 { name="HoRM"; version="0.1.1"; sha256="0l0gcp1bagm7zbjg7hw2748aqjn9592531d0w5vjap0jgalaig32"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; HomoPolymer = derive2 { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[deSolve MenuCollection RGtk2]; }; @@ -1297,7 +1343,7 @@ in with self; { ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; }; ICCbin = derive2 { name="ICCbin"; version="1.0"; sha256="1ybhxk5bvgfsz45r1kbb8b82qwjb8a88q11x5c4dbdk85fkxg3w9"; depends=[]; }; ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; - ICEbox = derive2 { name="ICEbox"; version="1.1"; sha256="0yv9ybvk6s3lnyx5xfsnx19x32r9g9gk7klkpc8q672pl4fn4yp5"; depends=[sfsmisc]; }; + ICEbox = derive2 { name="ICEbox"; version="1.1.1"; sha256="1j2sdszvi6h1pjv1n46qymgfxc7rdznspjxpyf2aa3axh0v0l3zk"; depends=[sfsmisc]; }; ICEinfer = derive2 { name="ICEinfer"; version="1.0-1"; sha256="0gjgr1r33w6d5ra0njh15lj46lw6v751yl8iqrdf4a5pazs7w3lm"; depends=[lattice]; }; ICGE = derive2 { name="ICGE"; version="0.3"; sha256="0xin7zml1nbygyi08hhg3wwr2jr1zcsvrlgia89zp4xanxlzgaqa"; depends=[cluster MASS]; }; ICGOR = derive2 { name="ICGOR"; version="2.0"; sha256="18fn10f5nqqbrfibqmp602nqpx794fy3gpxp1bd10xn48llhqfc4"; depends=[ICsurv MASS pracma survival]; }; @@ -1313,7 +1359,7 @@ in with self; { IDTurtle = derive2 { name="IDTurtle"; version="1.2"; sha256="15r806vk5lmvyclsynzq9qr8pgwwkxal1j6xcq6408i8kq1hk3fb"; depends=[]; }; IDmining = derive2 { name="IDmining"; version="1.0.0"; sha256="112m9dpzq6dl055wf1hhnxqr0rfvm1dv75mbj60fdwlf5q4sgsia"; depends=[dplyr]; }; IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; }; - IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.4.1"; sha256="093c7jx74hl41v6i75qlphshw6gbxn7cl9063f971ilxi4hmsd21"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; + IGM_MEA = derive2 { name="IGM.MEA"; version="0.3.5"; sha256="09k5di7bqlqi2m3jn39ahnf7x96wx1h06bw0ah6pdszwd97yy33i"; depends=[emdist ggplot2 gridExtra gtools lattice plyr reshape2]; }; IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; }; ILS = derive2 { name="ILS"; version="0.1.0"; sha256="18phs1q28mpwvwnzn0hgjxy978f7n4c3p94jxjp0sy3as67hqphp"; depends=[depthTools fda_usc MASS multcomp]; }; IM = derive2 { name="IM"; version="1.0"; sha256="1f1vr5zfqnanc5xmmlfkjkvxwbyyysi3mcvkg95p8r687a7zl0cx"; depends=[bmp jpeg png]; }; @@ -1322,17 +1368,19 @@ in with self; { IMIS = derive2 { name="IMIS"; version="0.1"; sha256="09zb48vdj0i3vf8vxrs07xwb9ji27vp2fyvmg6jfq631licsryc2"; depends=[mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.0"; sha256="17m2gqwaqam8wv7214x4hp93imgfzilgm42zx5z21ipypiq6rqfy"; depends=[]; }; + IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; IMak = derive2 { name="IMak"; version="1.1.2"; sha256="19si4hhvi8kddkp2kr1yw2bcw1qkk0i42saklvwk751gdmyzl9p3"; depends=[]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-8"; sha256="13r89r14xpihfqddwzkhxg4jgxyl59826x2insrall3mj2yffj90"; depends=[Matrix sp spdep]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; }; IPSUR = derive2 { name="IPSUR"; version="1.5"; sha256="0brh3dx7m1rilvr1ig6vbi7p13bfbblgvs8fc114f08d90fczwnq"; depends=[]; }; + IPWsurvival = derive2 { name="IPWsurvival"; version="0.5"; sha256="0lmw0ifj8cds8lzyjkkv0i0zim23p0a3pawlhmhdm3nfvwawb853"; depends=[survival]; }; IPtoCountry = derive2 { name="IPtoCountry"; version="0.0.1"; sha256="1b10z93mc31cr1c5wxp9xz9cr3jm4n4g5kav09dyallpgw60rskp"; depends=[data_table devtools dtables ggplot2 install_load maps scales]; }; IQCC = derive2 { name="IQCC"; version="0.6"; sha256="0gsnkdl4cfxzq6pm9g4i1g23mxg108j3is4x69id1xn2plf92m04"; depends=[MASS micEcon miscTools qcc]; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.0.4"; sha256="0in50k366yjqgpgzh73bfb8v6cqdrr68b8xvsa1jmi2f438j3nrx"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.1"; sha256="0h2r1yijc00va48zhvb9b0mnmw9b1anfhs9v8gjqyv4dy6l8lrif"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; - IRTShiny = derive2 { name="IRTShiny"; version="1.1"; sha256="0izw7mk78b9ab2p6jb5vph80cjbaq0m6xvyw8xlzypa3j3ns17sv"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.3"; sha256="0ba0pcjxhw93wdhz513j7a595bj5jfi50xagb85znxh5bi0lsxp4"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRTpp = derive2 { name="IRTpp"; version="0.2.6.1"; sha256="10shzyiawk65pikawvhg58kx6fpvs1dazqmfjf3rfvly1lc0px1q"; depends=[FactoMineR MASS mvtnorm numDeriv Rcpp]; }; IRdisplay = derive2 { name="IRdisplay"; version="0.4.4"; sha256="19l4flvik8zw2pany8dpjbrh0bji6bag6pmclgwqnq80532hnfp8"; depends=[repr]; }; ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; @@ -1366,24 +1414,26 @@ in with self; { Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; }; InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; }; InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.4"; sha256="145k4hggymra2jnxkcck795xk280yyldfzh9ls2irnsxmxfszr52"; depends=[boot dplyr survival]; }; - Infusion = derive2 { name="Infusion"; version="1.0.0"; sha256="1n0wp05xzr1sbd1a5p36d7f9lg7bhp1yha71zg6h5zjdzpsjjh1a"; depends=[blackbox geometry Matrix mvtnorm numDeriv proxy rcdd Rmixmod spaMM viridis]; }; + Infusion = derive2 { name="Infusion"; version="1.1.0"; sha256="07wzs0gnqgasxsvqawdsywasb2ybcml8fbg4jrmdy02ni8d8zmhs"; depends=[blackbox geometry Matrix mvtnorm numDeriv proxy rcdd Rmixmod spaMM viridis]; }; InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.0.1"; sha256="1wirdbz4v7hk7znpjhw9j3l596lmfcrlr4wxayw7klbbdhcwq5qs"; depends=[MASS]; }; IntClust = derive2 { name="IntClust"; version="0.0.2"; sha256="1n0ywickky1w5m8swfidiprdnkrv0mrh9z5294bimxj5ppi1yl8v"; depends=[a4Core ade4 analogue Biobase cluster e1071 FactoMineR ggplot2 gplots gridExtra gtools limma lsa plotrix pls plyr prodlim SNFtool]; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; IntNMF = derive2 { name="IntNMF"; version="1.1"; sha256="0bw6ycf7zrbfh8dfpgva1a51nazkvwlq7pxdhpp1j1mhabwm2nq2"; depends=[cluster InterSIM MASS mclust NMF]; }; IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; }; - IntegratedJM = derive2 { name="IntegratedJM"; version="1.4"; sha256="1r42zzrm5cmqlaxxzla0fwf5l34qjil9ndmv2cdwzw1kbqp84qz4"; depends=[Biobase ggplot2 nlme]; }; + IntegratedJM = derive2 { name="IntegratedJM"; version="1.5"; sha256="0vw2k8f0smb2vbn10rqp5alhra8q5d87c0zjs2xjc8w6i72fy2q8"; depends=[Biobase ggplot2 nlme]; }; IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.5"; sha256="0f2jsf6lh1nrrfqdgq72jqan94f81cr2pckfcjn86c933gjlq4bm"; depends=[bootstrap caTools ggplot2 limSolve Rcpp]; }; InterSIM = derive2 { name="InterSIM"; version="2.1"; sha256="092fw918qq8pahyxxznabkdfrb8700bpkkq96zj8ihpkx2ngkxln"; depends=[MASS NMF]; }; InterVA4 = derive2 { name="InterVA4"; version="1.7.3"; sha256="1ql9mdl9q7n7kj4c6wfgjfi87bp7n30knbxg9way7ifgr2yqn8bb"; depends=[]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; }; + InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; Interpol = derive2 { name="Interpol"; version="1.3.1"; sha256="1598lnnrcxihxysdljphqxig15fd8z7linw9byjmqypwcpk6r5jn"; depends=[]; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="0.83"; sha256="1iwhgfb7z9pbnwzn626v0w0ycfjlhpaiv1yzm062samvr0lqiyrh"; depends=[enviPat plyr Rdisop]; }; InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.6-1"; sha256="16qlskxszpi24qsdl821n72pzdvmf1gg7lnlwyhyzhzzkh9az1pd"; depends=[glmnet mboost]; }; InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; }; + Inventorymodel = derive2 { name="Inventorymodel"; version="1.0.3"; sha256="11hfyxlnqzk9fpjbisbgdyx99svm0sak0x0r4xrlrxw66f0gwllf"; depends=[e1071 GameTheoryAllocation]; }; InventorymodelPackage = derive2 { name="InventorymodelPackage"; version="1.0.2"; sha256="1w35idsagl9v93ci3qmal3xbf11sy6h1k7xnv25c59ivfnpjpkva"; depends=[e1071]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.1.0"; sha256="0741093vq1cqs9zh95fc6kwpd4a4r4yxvmcnp7f7j5xxyqy1h3xz"; depends=[]; }; IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; @@ -1392,8 +1442,8 @@ in with self; { IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="0.10"; sha256="1hlhj36bmxlj8y83kmis0knwgfn0s8dab1nw0715d2vhh74g4xmp"; depends=[MASS]; }; - IsoriX = derive2 { name="IsoriX"; version="0.4-1"; sha256="0j6lb7kvxw1lywq0jg8d26936521pyw5apz9k9cf34pb3hsa5qm2"; depends=[latticeExtra numDeriv proxy RandomFields raster rasterVis sp spaMM]; }; + IsoplotR = derive2 { name="IsoplotR"; version="0.11"; sha256="0nk3xs84mk4fkwlrxnrd5hn9h4ysdpn41m8j0sjmfcw4s5ar36fd"; depends=[MASS]; }; + IsoriX = derive2 { name="IsoriX"; version="0.5"; sha256="177z16afx0ws1y99phhb3wpy5qpf9w1964rh0dxqrwr7xas20jlq"; depends=[latticeExtra numDeriv proxy raster rasterVis sp spaMM]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; JADE = derive2 { name="JADE"; version="2.0-0"; sha256="15bcq6r2iargxkb0pdbqkwrrn2rs7hc3y5fxjm5mb377513sdz5j"; depends=[clue]; }; JAGUAR = derive2 { name="JAGUAR"; version="3.0.1"; sha256="0lyc8biwj9yir1i06klp2jkb31mnzwp226aw7pwabkprfhqgfmqd"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; }; @@ -1424,8 +1474,9 @@ in with self; { Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; }; KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KATforDCEMRI = derive2 { name="KATforDCEMRI"; version="0.740"; sha256="1k8fihd9m26k14rvc5d5x0d9xc3mh8d49hs64p55np1acqfhg2sy"; depends=[locfit matlab R_matlab]; }; + KENDL = derive2 { name="KENDL"; version="1.0"; sha256="1w5d23l3fyxa0rf7nwnp4y8p4lxpf14kl0avpz6kwaxrizw3zgmk"; depends=[]; }; KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; }; - KFAS = derive2 { name="KFAS"; version="1.2.5"; sha256="144yiwww0vn309dikhj8irppg021qjy3zi6m6yna14payplnqyxr"; depends=[]; }; + KFAS = derive2 { name="KFAS"; version="1.2.6"; sha256="0v03wx9rl73d880db680q1cnl8wcl6lkn4jfgk39kwlqb5348fb2"; depends=[]; }; KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; }; KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; }; KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; }; @@ -1444,7 +1495,7 @@ in with self; { Kernelheaping = derive2 { name="Kernelheaping"; version="1.6"; sha256="1xsszbx6srrgzdddr11pfrmfi985amjwngsrbhg8mgn58pwz3yiy"; depends=[ks MASS plyr sp sparr]; }; Kmisc = derive2 { name="Kmisc"; version="0.5.0"; sha256="0pbj3gf0bxkzczl6k4vgnxdss2wmsffqvcf73zjwvzvr8ibi5d95"; depends=[data_table knitr lattice markdown Rcpp]; }; KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; - KnowBR = derive2 { name="KnowBR"; version="1.1"; sha256="10cnnr110wyzxlmh8w3gfp53dx9jww0bv95rly8rvp5bhrava8y5"; depends=[]; }; + KnowBR = derive2 { name="KnowBR"; version="1.2"; sha256="1d2rzggj3jp8r748mrvk4c692xkmbim5avxjy30qzn3wmy15r479"; depends=[]; }; KoNLP = derive2 { name="KoNLP"; version="0.80.1"; sha256="1chj8kv1l405dm0jcsxjjjxx395z05sfxbcc5vxnpbydx7lxa6zy"; depends=[devtools hash rJava RSQLite Sejong stringr tau]; }; KoulMde = derive2 { name="KoulMde"; version="3.0.0"; sha256="01mczlrdrfwdp2cj10kdqay3qpg8xf2v7vym62pll9l8n595snrl"; depends=[Rcpp]; }; Kpart = derive2 { name="Kpart"; version="1.2.0"; sha256="14c6ngc37xpxy5pd5jishaqz6aahky32p0x5bfsn5zirdahlphsa"; depends=[leaps]; }; @@ -1469,7 +1520,7 @@ in with self; { LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; - LEGIT = derive2 { name="LEGIT"; version="1.0.0"; sha256="0j15z2krj7b1939vrvjhcr3aw5crjdrvn6llzzrkibrh71m4dscq"; depends=[formula_tools pROC]; }; + LEGIT = derive2 { name="LEGIT"; version="1.0.4"; sha256="1va3y3mxjc41pridrk0lp0vb7ds4x93sv3i8h7h3dc9p58daw20j"; depends=[formula_tools pROC]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0"; sha256="11vy6gg2x98s1y8a5ns9vcd61gw8ax1lhn4lvicdjbd1lg18nm83"; depends=[]; }; LGEWIS = derive2 { name="LGEWIS"; version="0.2"; sha256="0aqvj6vphg33jfyfkj0zkdbp60a94jlc1vcsba2nyywc54qm9wjh"; depends=[CompQuadForm geeM pls SKAT]; }; LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; @@ -1482,7 +1533,7 @@ in with self; { LLSR = derive2 { name="LLSR"; version="0.0.2.0"; sha256="0nxp1sfnhgf0iqfhwqvr7a0mvs3swsj2l0shcyrb3zliyd23g5ax"; depends=[digest ggtern rootSolve svDialogs XLConnect]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; }; LMest = derive2 { name="LMest"; version="2.3"; sha256="0jgfdkzx8zhfjsmx828j1x1dmikqhdpgpqzr7nq8zyr4805l67xx"; depends=[MASS MultiLCIRT]; }; - LNIRT = derive2 { name="LNIRT"; version="0.1.0"; sha256="0szcdp9vl1mifb3ybwi836xif7b57vk2jqp0zcadkfardjpc7pd0"; depends=[MASS]; }; + LNIRT = derive2 { name="LNIRT"; version="0.2.0"; sha256="02gaqn2pixry6qgybwszsv60pk6hzdd51axchkq3ma3gb6biw4fv"; depends=[MASS]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; LOGIT = derive2 { name="LOGIT"; version="1.3"; sha256="1nx9ycrys0p08xr1n7bqgn47k5wz1zbp6w5pwsqk5c6f6did2rs1"; depends=[caret e1071 ggplot2 MASS pROC reshape]; }; LOST = derive2 { name="LOST"; version="1.2"; sha256="1ymdhd2iayqyf7kvvcc234bslxn1wdds54m1bi234g1f4ljj1qv8"; depends=[e1071 gdata MASS miscTools pcaMethods shapes]; }; @@ -1509,7 +1560,7 @@ in with self; { LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="0.5.0"; sha256="18awxiln2ilr0jjyvkv47a3xy7v8rjlaksklb4pcn1kdlvb1nqf0"; depends=[interval partykit rpart survival]; }; LVMMCOR = derive2 { name="LVMMCOR"; version="0.01.1"; sha256="1lq4hqcg0qkywdr4a22m1fr3m97749mm6n2jzdj9i7jrf0agc1fs"; depends=[MASS nlme]; }; - LW1949 = derive2 { name="LW1949"; version="1.0.0"; sha256="0icfgsh93f4i73p7wpacb6dsg4cdfh71l7rwhqknnifvb5nvp8sv"; depends=[MASS mgcv plotrix]; }; + LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LaF = derive2 { name="LaF"; version="0.6.3"; sha256="0mp1g8pikmkahxgshgs4a7iryxzzcxhxdzvdn60s6m9h1addvhww"; depends=[Rcpp]; }; LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="2.0"; sha256="0xqqq8glrq5c089riybviq3zv3la1pqhi2fcalrz3i9n2fc13nd1"; depends=[data_table maptools rgdal rgeos sp spdep]; }; Lahman = derive2 { name="Lahman"; version="5.0-0"; sha256="03zfgsgf36lnsjlrqfh1npqnz52dhd6xyzs7k1sxygwy62lg03lx"; depends=[dplyr]; }; @@ -1519,13 +1570,13 @@ in with self; { Langevin = derive2 { name="Langevin"; version="1.2"; sha256="0iy1nh4wzipw8spmfr0kscdnpaz3cq4idkbl5khiia2jid0kimvl"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.0.1"; sha256="0yc6bv1mvs8ivrjgi49xz5bn4if24693rw148w5zxd11r3ryy8dy"; depends=[]; }; - LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.1"; sha256="1vd47vf88qsac02sdnwag1zgvclnjw10apdbfkapxkik3xs0wkck"; depends=[Matrix Rcpp]; }; - LatentREGpp = derive2 { name="LatentREGpp"; version="0.2.2"; sha256="0y00rf53bwmx3f6k637n3jh8597k96xm679li079ij5l7j9r2yb3"; depends=[ade4 BH FactoMineR fastGHQuad MASS mvtnorm numDeriv optimx paran randtoolbox Rcpp RSpectra sirt statmod]; }; + LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.2"; sha256="1z1cnj6r6cq3b8xa9qck3ijfmzsr70r2p9m1ndakijb36pgwrzcs"; depends=[Matrix Rcpp]; }; Laterality = derive2 { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; }; LatticeKrig = derive2 { name="LatticeKrig"; version="6.2"; sha256="1d3qphpydgrqkyk5y5pr6jjndaf9vnfcin447x4z0iczannhggbk"; depends=[fields spam]; }; + LeArEst = derive2 { name="LeArEst"; version="0.1.4"; sha256="0x4bwwrqkql9f01lgli3d9083ziihaj35afnz857ydrdx4ckhw4f"; depends=[conicfit jpeg opencpu]; }; LeLogicielR = derive2 { name="LeLogicielR"; version="1.2"; sha256="0h52pzrksi1mn55mnxbfi61hl7x61cnkhp450slfrk68f6kp30x6"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; LeafAngle = derive2 { name="LeafAngle"; version="1.2-1"; sha256="0g3i5300f3rvjz7g7z8s5n8xdcsp41gf1vnr4g36m1likddfpxlx"; depends=[]; }; - LeafArea = derive2 { name="LeafArea"; version="0.1.5"; sha256="1a3yygpnc160qkwp3fd6aksynd533z5slncvby06byngqb42ib4h"; depends=[]; }; + LeafArea = derive2 { name="LeafArea"; version="0.1.7"; sha256="0pn6hh9ipr609pi49ls8wxnx7v8q1wyp84i22zzwxyzwaap5nmj2"; depends=[]; }; LearnBayes = derive2 { name="LearnBayes"; version="2.15"; sha256="0cz2rgqy1cmdz2h1qbdvfqxmmdzmg2z1scdlxr7k385anha13ja5"; depends=[]; }; LendingClub = derive2 { name="LendingClub"; version="1.0.2"; sha256="1k7jvlmjyp5n45lz20as6v93lvgap766qlxp1chvv83ranh6dw3d"; depends=[dplyr httr jsonlite]; }; LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; }; @@ -1562,18 +1613,17 @@ in with self; { LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; LowRankQP = derive2 { name="LowRankQP"; version="1.0.2"; sha256="0is7v4cy4w1g3wn4wa32iqv4awd1nwvfcb71b3yk5wj59lpm8gs3"; depends=[]; }; LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; }; - Luminescence = derive2 { name="Luminescence"; version="0.7.3"; sha256="1g2dqar35rrnky9p8h14p63prq9x7fl629y2xkaf70gfkk1j4pg4"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm raster Rcpp RcppArmadillo readxl shape XML zoo]; }; + Luminescence = derive2 { name="Luminescence"; version="0.7.4"; sha256="11q444h0bk8il02rk3lhnh614zhzi9clc2wwimhmgbmlar0znbqh"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm raster Rcpp RcppArmadillo readxl shape XML zoo]; }; M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; }; M4comp = derive2 { name="M4comp"; version="0.0.1"; sha256="1lxm6qcbdp7i00vxbikhyl7pdxnz4czar10kh9xm0qwy8sl8lxg2"; depends=[]; }; MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="1.0.1"; sha256="0qddlp4yfqfmswgjnfqlj9zqn6jdy94rzw92g0rl83iia9diqsmp"; depends=[MASS miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; }; - MALDIquant = derive2 { name="MALDIquant"; version="1.16.1"; sha256="0058i0nc81qp7sj7j9bcy7s2vkmbacj5ycwdnvsfmsr172adxdar"; depends=[]; }; + MALDIquant = derive2 { name="MALDIquant"; version="1.16.2"; sha256="0z5srzsfgsgi4bssr4chls4ry6d18y2g9143znqmraylppwrrqzr"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.10"; sha256="1h1lvmw3233wgy1wvpa6n5q5j6z27hg3k31rq4a7c53w8g1bsmi3"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; - MAMA = derive2 { name="MAMA"; version="2.2.1"; sha256="1dcyfir6jv28jzvphiqrjns3jh2zg2201iwcvjzbmddl2isk9h0i"; depends=[genefilter GeneMeta gtools MergeMaid metaArray metaMA multtest xtable]; }; MAMS = derive2 { name="MAMS"; version="1.01"; sha256="0vm1pnh5bcggsip4cpbfif2j2glvbsscpnpjsycbd2y0m05asccz"; depends=[mvtnorm]; }; MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; - MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.0.4"; sha256="1xw0wk2a14xwgay3vw7s1sxpwrmm01lqnfphcnhf1iyhdsxqnnnc"; depends=[magic MASS Matrix plotrix plyr]; }; + MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.0.5"; sha256="1xh1nn2wipxyl8nj3vnpbyyww2np3pv12c78sf87kyl4q5c20v64"; depends=[ellipse magic MASS Matrix plotrix plyr]; }; MAPA = derive2 { name="MAPA"; version="2.0.1"; sha256="013gp1wnw77nf1d9mvvw9zxs3dml9jvxd50nifx76bpkr00im940"; depends=[forecast RColorBrewer smooth]; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; }; @@ -1589,8 +1639,8 @@ in with self; { MAc = derive2 { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; MAd = derive2 { name="MAd"; version="0.8-2"; sha256="0mhys27rmzb0kal4jr8j2y44z4qq46fw260sxl8da9qqvplcwq1p"; depends=[]; }; - MBA = derive2 { name="MBA"; version="0.0-8"; sha256="09rs1861fz41dgicgh4f95v4zafh1jfxhqar1plpqqdx8z1gpxfl"; depends=[BH sp]; }; - MBC = derive2 { name="MBC"; version="0.10-1"; sha256="14y0adpm0h57b6r15hi69ri69kmfvxnacvxsspfhijyxhnwgnan6"; depends=[energy Matrix]; }; + MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; }; + MBC = derive2 { name="MBC"; version="0.10-2"; sha256="0c40k3m9z9cqk3778hwyy0i56qnsvw1dwpa6p9v097fbpacfsrg2"; depends=[energy Matrix]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; MBESS = derive2 { name="MBESS"; version="4.2.0"; sha256="02d7wpsh58jq79ph9xxx33ikzb4j05kdfmjy935gyx3i3mycapm1"; depends=[boot gsl lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="1.0.61"; sha256="1ahc3xwwgfn052m674l2cxjw87qgp788hzx30z56dihfpirvw45f"; depends=[class geometry mgcv mvtnorm randtoolbox]; }; @@ -1609,6 +1659,7 @@ in with self; { MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.24"; sha256="0s2x8kazn3g3x3z4ji95c5vmfj8awcjmx92c0alsj5ms1bqxsh7x"; depends=[ape coda corpcor cubature Matrix tensorA]; }; MCMCpack = derive2 { name="MCMCpack"; version="1.3-9"; sha256="0wvv7qzrm1h5w4znz6dqypyxdj5ckpsljid1l9cs1xl9mnjfgpay"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.6"; sha256="1gz01jqi4w0lnp4mkxa5ri09hkc4c2qwxifbmx50m75rhr0328hr"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCvis = derive2 { name="MCMCvis"; version="0.7.1"; sha256="1hqkxqs1s0m1znqlf6bjx5nscqv8galnkxgp738pcvvw0mwn19pk"; depends=[coda rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-20"; sha256="0j36dhi3bf3q14bbcmrmipz2fcn6g9gsqidzm43i8x5r7hcvv2lh"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-9"; sha256="03zqassvyqwllg1yjfdg2zxamkg2dy8cy19ki5srpn6clv5zy1rj"; depends=[lattice mvtnorm]; }; @@ -1618,15 +1669,15 @@ in with self; { MChtest = derive2 { name="MChtest"; version="1.0-2"; sha256="01lflilrp42m236cznn6qgzvv5v9fzpx6wcfxp3q545bw2xmbdvj"; depends=[]; }; MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; }; - MDMR = derive2 { name="MDMR"; version="0.4.3"; sha256="0vgqdvvryyyzibpfwax8qx45phc9iwb5rwgqpcp21d32z0n7a56f"; depends=[CompQuadForm]; }; - MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.2"; sha256="04w0y5ib23l7nhj1947hwvfk6lpwwc11amqpyw1w53yj794g97wz"; depends=[linprog Matrix]; }; + MDMR = derive2 { name="MDMR"; version="0.5.0"; sha256="185qdm39mydsb7h09j0763a13wd84h0w8rx2g0xwdynp2rakkw75"; depends=[car CompQuadForm lme4]; }; + MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.3"; sha256="0aaw787fvcyhw6mbl42icgqfdzvfr618vg179984xqifafr40dyc"; depends=[linprog Matrix]; }; MDR = derive2 { name="MDR"; version="1.2"; sha256="0g2fvvcwagml6635va87nc0ijzy0pypx5aqzz7mf5w13j0wpm24y"; depends=[lattice]; }; MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; }; MDplot = derive2 { name="MDplot"; version="1.0.0"; sha256="18q25qxwqd8jwn8y781xqisd15k9p81nmxkx41pyi703njav1fm1"; depends=[gplots gtools MASS RColorBrewer]; }; MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; }; MEGENA = derive2 { name="MEGENA"; version="1.3.6"; sha256="0ylv7kbk0x3rm08aiwci4p3kma08qj4szlw2h1d6wcqmipy93v8s"; depends=[BH cluster doParallel foreach fpc ggplot2 ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; }; - MESS = derive2 { name="MESS"; version="0.4-3"; sha256="0317nk2lbrrflg6gaz7nz413n4i79xvh6jndw0m4dzlwmcj6al2r"; depends=[geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; + MESS = derive2 { name="MESS"; version="0.4-15"; sha256="0cfhbl099znjyij6sfhp5ma7yk1cj20paqixdy8lrif31mgkibd0"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.1"; sha256="1ayyrxdb9qd7fxnr8y2lbjcd2c8m38mjm1ks6z22vyddbhkf78in"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; }; MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; }; MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; @@ -1635,7 +1686,7 @@ in with self; { MFPCA = derive2 { name="MFPCA"; version="1.0-1"; sha256="0sw8svp0zgdl2yyvf3jq3c3kai6pnnn93cizgyjdc63y74k3n3pz"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MGGM = derive2 { name="MGGM"; version="1.0"; sha256="0j9wyshwxd7zqb60avb7dmfgnrzv2nyn983bw0g5997zixz0w6mp"; depends=[]; }; MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; - MGLM = derive2 { name="MGLM"; version="0.0.7"; sha256="0wqwdx8gskrp2y04f947m0cvgd685n8g3wgggc8sv0ra7z2qzx9y"; depends=[]; }; + MGLM = derive2 { name="MGLM"; version="0.0.8"; sha256="1yzi679jm7x9qkz0d3az84clkjfc7wjnxkk6n6s6ia4bnw05d5v7"; depends=[]; }; MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive2 { name="MGSDA"; version="1.4"; sha256="0grwl740yvz2av5nkvmyyrr8ji5f39sjs1c5gxp6lp9p36i2wc32"; depends=[MASS]; }; MHTdiscrete = derive2 { name="MHTdiscrete"; version="0.1.3"; sha256="14qhrja5b2nxph3mda55y31jix41i6w884m9yl4c0f9g730ai7l6"; depends=[]; }; @@ -1656,14 +1707,14 @@ in with self; { MLCM = derive2 { name="MLCM"; version="0.4.1"; sha256="1g6lmw75qdiq0fshxr3sqwm1a3y4928chxkggnfwwxp8hqw4r6px"; depends=[]; }; MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; - MLID = derive2 { name="MLID"; version="1.0.0"; sha256="1zbydvw4sv5q0lh2d4z0alrlc28dy6xnxd67iq8qd0k28gpwnzd1"; depends=[lme4 nlme]; }; + MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; MLRMPA = derive2 { name="MLRMPA"; version="1.0"; sha256="0gfbi70b15ivv76l3i0zlm14cq398nlny40aci3vqxxd0m2lyyx5"; depends=[ClustOfVar]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; MM = derive2 { name="MM"; version="1.6-2"; sha256="1z7i8ggd54qjmlxw9ks686hqgm272lwwhgw2s00d9946rxhb3ffi"; depends=[emulator magic Oarray partitions]; }; MM2S = derive2 { name="MM2S"; version="1.0.5"; sha256="0h10cbsdnndllwq4cb4aamjy104ckvn01skh7rixa1iqdndac9fx"; depends=[GSVA kknn lattice pheatmap]; }; MM2Sdata = derive2 { name="MM2Sdata"; version="1.0.1"; sha256="1prx0gm9shizj45382qhja417y18jp6spk2hmgrzb7sbniyqs5pd"; depends=[Biobase]; }; - MMDai = derive2 { name="MMDai"; version="1.0.1"; sha256="0bh25yhdyk5i4gh4h6f5i8gkwympy3i2xwlkgrj18jzghyy02rx2"; depends=[DirichletReg]; }; + MMDai = derive2 { name="MMDai"; version="1.2.0"; sha256="083007bp3spgjx9y65hwk6074yky1sf5n7w44pfnxzrjbc7d0qhb"; depends=[DirichletReg]; }; MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; }; MMS = derive2 { name="MMS"; version="3.00"; sha256="06909912v2hr52s8k0a0830lbmdh05dcd7k47vydhbwq3rzf3ahg"; depends=[glmnet Matrix mht]; }; MMWRweek = derive2 { name="MMWRweek"; version="0.1.1"; sha256="16dwmpj13rzxmd2x7xaakw2zq2aly7ajjbfnc39qvdzk6n2x37wn"; depends=[]; }; @@ -1674,6 +1725,8 @@ in with self; { MODIS = derive2 { name="MODIS"; version="1.0.0"; sha256="05p4lisdbpzvq42pvfc2hdqr5p16gkr85g4bcc5j4h4f4cva5drl"; depends=[bitops mapdata maps ptw raster RCurl rgdal rgeos sp XML]; }; MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; MODISTools = derive2 { name="MODISTools"; version="0.95.1"; sha256="099xh987phvya67b75c8j4z58zpqf69q3qxh280l9ka3w6pq3ljm"; depends=[RCurl XML]; }; + MODIStsp = derive2 { name="MODIStsp"; version="1.3.2"; sha256="1qsw7s1skkfadyap3w8z1rb9yjls154wp7a2fa2ifxm9164976b8"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 hash httr pacman plyr raster RCurl rgdal rgeos RJSONIO sp stringr XML xts]; }; + MOEADr = derive2 { name="MOEADr"; version="0.2.1"; sha256="0m5nbr2xcy9nl808ydsn07w0p3pl2cd7dqfz9mk0z52mghvz390f"; depends=[assertthat FNN]; }; MOJOV = derive2 { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; }; MOrder = derive2 { name="MOrder"; version="0.1"; sha256="1vhy20xyvfc18f04hvlb1jm2n0caaz8ysy13w2rra5i4kjdvz52i"; depends=[]; }; MPAgenomics = derive2 { name="MPAgenomics"; version="1.1.2"; sha256="1gwglzkip54si6i23y8s5hhkzrwmhvfyvsian9593ixy4kqlm2bz"; depends=[cghseg changepoint glmnet HDPenReg R_utils spikeslab]; }; @@ -1700,11 +1753,12 @@ in with self; { MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; }; MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; - MST = derive2 { name="MST"; version="1.3"; sha256="0qxkwkb13g6jqsiwa44izp2f3swzc7zhkprpl2qlxfs6sszr9v36"; depends=[MASS partykit survival]; }; + MST = derive2 { name="MST"; version="2.0"; sha256="131c98lzy1cs1gbv20nv9r6yhlyyhk43hh1mrx12k1cgw299265k"; depends=[Formula MASS partykit survival]; }; MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; }; MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; }; MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; }; MSwM = derive2 { name="MSwM"; version="1.2"; sha256="01l23ia20y3nchykha4vz6sa757zmbvgx2315cacxfcqk9rgs08c"; depends=[nlme]; }; + MTA = derive2 { name="MTA"; version="0.1.0"; sha256="0h1nnvylp5yvzx6mljayjjz73l0bjyz5zahymxa9z3z7jlahvkwh"; depends=[igraph rgeos sp]; }; MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; }; MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; }; MTurkR = derive2 { name="MTurkR"; version="0.8.0"; sha256="0q498chr2s67ai7lfxi6kdficqbs5sxj9asyv69z2a37fmsr4va7"; depends=[base64enc curl digest XML]; }; @@ -1712,20 +1766,20 @@ in with self; { MUCflights = derive2 { name="MUCflights"; version="0.0-3"; sha256="03ksvv5nyzlqiml1nz405r3yqb2cl35kpm1h61zcv2nqq8cxqshs"; depends=[geosphere NightDay RSQLite sp XML]; }; MVA = derive2 { name="MVA"; version="1.0-6"; sha256="09j9frr6jshs6mapqk28bd5jkxnr1ghmmbv6f4zz0lrg81zjizl3"; depends=[HSAUR2]; }; MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; - MVLM = derive2 { name="MVLM"; version="0.0.1"; sha256="1vl6wn7ryn529bhx2l5frw89dqn79bnk4qfih4mj1dyycwh3h4fj"; depends=[CompQuadForm]; }; + MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="4.0.2"; sha256="0k8fbhnw2lbjgafab4m6j7nkzclj1226fdiv8bmv5vcm6g82nb19"; depends=[MASS moments mvoutlier nortest plyr psych robustbase]; }; MVR = derive2 { name="MVR"; version="1.31.0"; sha256="114qv235dmbmdlg2dssbgn0bj78r6khg58xswvv98d58kfypw581"; depends=[statmod]; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; }; - MVar_pt = derive2 { name="MVar.pt"; version="1.9.7"; sha256="1d5xgq3ydzv69v5dazkmmbxgag530cx5m1a3566kxkdk02rd8i71"; depends=[]; }; + MVar_pt = derive2 { name="MVar.pt"; version="1.9.8"; sha256="0ysdrdjlljbscw92ylyq4m22zvj3b9yp9mpw4pdlnzwix9z0k2yx"; depends=[]; }; MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; }; MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; }; - MXM = derive2 { name="MXM"; version="0.9.8"; sha256="1bi8lkw3dx5m2p6r8yr60ysxs0ijkaahjvh7c8q7vlg8116fdvbp"; depends=[doParallel e1071 energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; + MXM = derive2 { name="MXM"; version="0.9.9"; sha256="1d6k941psi7d4ycsalvbi8n6xhahj235fgq75izjvnwxbs0j704b"; depends=[doParallel e1071 energy foreach lme4 MASS nnet ordinal quantreg relations Rfast speedglm survival visNetwork]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MagneticMap = derive2 { name="MagneticMap"; version="1.0"; sha256="1634bk6x92z01gyiy89c1g6z5cjsj8pf4f358y7rk2kppmfz4cf7"; depends=[scatterplot3d]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; }; - ManifoldOptim = derive2 { name="ManifoldOptim"; version="0.1.2"; sha256="0ywkd4i9bxavxffh89sxcz995vfnk1czcvcjdwzbvrpxa5fwbx79"; depends=[Rcpp RcppArmadillo]; }; + ManifoldOptim = derive2 { name="ManifoldOptim"; version="0.1.3"; sha256="1ppc0ik7vx14n6alq9wpykgfacg78ph9fc5r9k9jqm55nwz4d3xh"; depends=[Rcpp RcppArmadillo]; }; ManlyMix = derive2 { name="ManlyMix"; version="0.1.7"; sha256="10m5kfs8n34frygn36ryn4h8128p4smmr5s2ngbbj05dchni09ai"; depends=[]; }; ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; }; Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; }; @@ -1733,7 +1787,7 @@ in with self; { MareyMap = derive2 { name="MareyMap"; version="1.3.3"; sha256="0d8prx08321f0p42xbnf0b1446fq4km35xs3ih5ssbdm14q7fnln"; depends=[tkrplot]; }; MarkowitzR = derive2 { name="MarkowitzR"; version="0.9900.0"; sha256="1wyqlgmb376dsvx7nixpbynjzp7xpmsh4fx9s7nai6fhjb50mxha"; depends=[gtools matrixcalc sandwich]; }; MasterBayes = derive2 { name="MasterBayes"; version="2.54"; sha256="016xk43mhl4249p3wsx0v68b69nmp7zllaa0c1in5l18g5v0npi0"; depends=[coda genetics gtools kinship2]; }; - MatchIt = derive2 { name="MatchIt"; version="2.4-22"; sha256="16j7kwnr94736p58a9fsjydkbixm71jgdmgfcvmr26c8r5q89042"; depends=[MASS]; }; + MatchIt = derive2 { name="MatchIt"; version="3.0.1"; sha256="0iifn286ssdavpg3ajlmd5z7n5wn0rsj3l23xf6qnvij35k95kbw"; depends=[MASS Matching rgenoud]; }; MatchItSE = derive2 { name="MatchItSE"; version="1.0"; sha256="01ghv3hdlsx6ypvsh7k0mi20yc8vg7z602mhcprhhh97qsb81v6h"; depends=[Rcpp RcppArmadillo]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.0"; sha256="015s3xdaj56prq8lsdry3ibjkrb6gg0fwgzjh496gdx5axvpbk8g"; depends=[Hmisc Matching]; }; Matching = derive2 { name="Matching"; version="4.9-2"; sha256="0lv5b41l797c4bl2rzmdqzjnn47zpvvcv3md3xwxvvz5knxky5x4"; depends=[MASS]; }; @@ -1747,13 +1801,15 @@ in with self; { MaxPro = derive2 { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; }; MaxSkew = derive2 { name="MaxSkew"; version="1.0"; sha256="1ylz51b9k6bi6xm1aarv7aff1n35bwb66nk1vzzkyqn9pylhmcmw"; depends=[]; }; MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-2"; sha256="0mk5h9bafy1ndi1h6vcjh285xfj38gjpiz6n8xcmp8zh6vi6gx70"; depends=[ggplot2 raster]; }; - MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.4.8"; sha256="007i1zmklcmj76kmyl60wvcgb9vzrn677k81n5mmfz36vr0zkp8f"; depends=[dplyr lubridate rgdal rgeos rvest sp stringr xml2]; }; + MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.4.9"; sha256="19j8mxlhwkr9safgs685kwz1b85z1mplihcjd1m7yc3sdpvmnsdd"; depends=[dplyr lubridate rgdal rgeos rvest sp stringr xml2]; }; McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; }; Mcomp = derive2 { name="Mcomp"; version="2.6"; sha256="01m2kawkxs9k7va3bvv7bknl4y13rhy8zczc093f10msgy6nqncl"; depends=[forecast ggplot2]; }; MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; }; + MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.0"; sha256="1gggia97ww4kiqhh2lnsmadgdxvpr36mdx1yrbgarj0sp6ilrd3l"; depends=[]; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.4"; sha256="0kk9gv2dzhg1y8s68aws327ysx33cy622djbfd5isbr7ikv2h80v"; depends=[doParallel doRNG foreach MASS mvtnorm ReporteRs survival]; }; + Meiosis = derive2 { name="Meiosis"; version="1.0.0"; sha256="0p8csgxpf898gk4kxnxhp1m0bl5kwqzhzj7l18072x2qi9cmb8gh"; depends=[BH Rcpp]; }; MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.2.0"; sha256="1rnsjrvshj41srbzrplfhqw5y68dab489rjn5bdhrk1lm0vz0zvc"; depends=[ggplot2 knitr plotly rmarkdown robustbase stargazer]; }; MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; }; MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; }; @@ -1773,7 +1829,7 @@ in with self; { MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; }; MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; }; MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; }; - MetaboList = derive2 { name="MetaboList"; version="1.0"; sha256="0gfv093l5s5gy98qcz49kr1qk8afkz1hm0hrd9a7k4r54fn6vx3c"; depends=[enviPick]; }; + MetaboList = derive2 { name="MetaboList"; version="1.1"; sha256="19vgf3y0r926dnpj1711607x5cjk8hmz2kzfgyhabq7mk2djdbbb"; depends=[enviPick]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; }; MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; @@ -1815,14 +1871,15 @@ in with self; { ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; }; ModelMap = derive2 { name="ModelMap"; version="3.3.5"; sha256="1rmm1a2nw91kzvxpvq9qhlag0dhihis7mgscgslqia6z8fr86qvs"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; }; ModelMetrics = derive2 { name="ModelMetrics"; version="1.1.0"; sha256="119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8"; depends=[Rcpp]; }; - Momocs = derive2 { name="Momocs"; version="1.1.0"; sha256="0r9q1ag25fcj9zl0vd5d6c6ijpildmqi2p7fnmhcp023x026sy2v"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS plyr reshape2 sp]; }; + Momocs = derive2 { name="Momocs"; version="1.1.6"; sha256="15rmda0d270wallhn9f0nksms194js3vy71cii0aih02rwcpg9kw"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS plyr reshape2 sp]; }; Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; }; MonetDB_R = derive2 { name="MonetDB.R"; version="1.0.1"; sha256="1r7vki0rrzwcrfg4f2lfx30g614vf2xi62qb1rs21a9j5741lxlx"; depends=[codetools DBI digest]; }; MonetDBLite = derive2 { name="MonetDBLite"; version="0.3.1"; sha256="1lbymf7kh3jag7qhb873mw2g66xp1589w2linp0r7kx0ia86rqd3"; depends=[codetools DBI digest]; }; MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; }; MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; }; MonoPoly = derive2 { name="MonoPoly"; version="0.3-8"; sha256="1dd2m4c726j94cxwsma33sc166c9656m7sl2b29bg6i0bmpvpmd2"; depends=[quadprog]; }; - Morpho = derive2 { name="Morpho"; version="2.4.1.1"; sha256="0wshfxxkbwwnj92law22wdfxw8hai1s576hi6gq2lda0684ccyvb"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; + MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.1"; sha256="0y76fg7s9i3s5iqrmirb797swg03y9akvn3ixg4gxm68diswsl8n"; depends=[abind codetools rlecuyer snow snowfall]; }; + Morpho = derive2 { name="Morpho"; version="2.5"; sha256="0gy34ksl5ykfvjpnlk5z6jc9npxdp5vbxfc7yvsbcaciy8x1qc1m"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; MortHump = derive2 { name="MortHump"; version="0.1"; sha256="0wks6kis1fa7vgcmwhaq57zrlk5m0c5rgkfipz64phky02c7v4c2"; depends=[demography HMDHFDplus Matrix minpack_lm MortalitySmooth RColorBrewer WeightedCluster]; }; MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; }; @@ -1845,15 +1902,16 @@ in with self; { MultiPhen = derive2 { name="MultiPhen"; version="2.0.1"; sha256="1gvsivx8qz5yl4rc4db8sg2llg8s4bgkg22aanvr01h649a08m16"; depends=[abind epitools gplots HardyWeinberg MASS meta RColorBrewer]; }; MultiRR = derive2 { name="MultiRR"; version="1.1"; sha256="1jrhx3nlqwsv3i6r8fs142llw88qad41rsh0sj1pv1gb928zpvl3"; depends=[lme4 MASS]; }; MultiSV = derive2 { name="MultiSV"; version="0.0-67"; sha256="0924lvkx12aqjxxz8bwqdi4h9xc2acf8aynllx0m45ip5r4gh1g2"; depends=[nlme reshape]; }; + MultiVarSel = derive2 { name="MultiVarSel"; version="1.0"; sha256="0r1l7h2rm7vlvnrsq0khjdd5cb236g9xq1fb1vr15038kf0lmkij"; depends=[ggplot2 glmnet Matrix]; }; MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; }; MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.1"; sha256="0x13q2kckw7c7bl35vdxyhhr7ij62wf0qbkxa40fi6aq2gjh89m6"; depends=[lme4 Matrix statmod]; }; MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.2"; sha256="1xp1bdkp87kvgsg4q5b91r712l6sdvmlcvaychi72pvgv33a8x11"; depends=[bootstrap Rcpp]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; Myrrix = derive2 { name="Myrrix"; version="1.1"; sha256="15w1dic6p983g2gajbm4pws743z68y0k2hxrdwx6ppnzn9rk07rs"; depends=[Myrrixjars rJava]; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-1"; sha256="0dy82l0903pl4c31hbllscfmxrv3bd5my5b2kv5d3x5zq0x99df0"; depends=[rJava]; }; - NADA = derive2 { name="NADA"; version="1.5-6"; sha256="0y7njsvaypcarzygsqpqla20h5xmidzjmya4rbq39gg6gkc0ky27"; depends=[survival]; }; + NADA = derive2 { name="NADA"; version="1.6-1"; sha256="1jjlm6rljk4nv6b7l2w3xnj31j61wq30sp5pnna8wav6gyjqjfmb"; depends=[survival]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; - NAM = derive2 { name="NAM"; version="1.5.0"; sha256="01p0xncaly7pxc9fpiqh77z0pq6cbbskj40r7rhhbiad5pdihb0r"; depends=[randomForest Rcpp]; }; + NAM = derive2 { name="NAM"; version="1.5.1"; sha256="0k3dkkrisqx71srma4lwkyk1rayhyjr0h91lzx3l2yal9r12flpc"; depends=[randomForest Rcpp]; }; NAPPA = derive2 { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; }; NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; @@ -1866,6 +1924,7 @@ in with self; { NFP = derive2 { name="NFP"; version="0.99.2"; sha256="1wnllzlww8257sbrgvfyvd21qvhf7j17mcpf6d4p6binaw8svnsb"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; }; NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; }; + NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; NHMM = derive2 { name="NHMM"; version="3.7"; sha256="0h6m01y42yswjgx3cfj4xwj0wq9nw0gzjz7vf9prm3vag3wnfs2q"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; NHMSAR = derive2 { name="NHMSAR"; version="1.4"; sha256="12szfj9lssx2x3ng99q34f2knn4b7588dz8b307fhqj4r0f8iqh3"; depends=[caTools glasso lars ncvreg SIS ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; }; @@ -1880,7 +1939,7 @@ in with self; { NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMOF = derive2 { name="NMOF"; version="0.40-0"; sha256="1zxbhpcl82v0wvp4dfpavwckvfyd2a9f4pbghk4mgqi0vhl8fgpz"; depends=[]; }; NNLM = derive2 { name="NNLM"; version="0.4.1"; sha256="1wi2rbj56v49hsnhwdyyjwfk4hb84sagfq6mpjis4ccq65hxkvfv"; depends=[Rcpp RcppArmadillo RcppProgress]; }; - NNS = derive2 { name="NNS"; version="0.2.6"; sha256="0lynyfj5njvk2smlp9l83fri6308kr6bblckz31wwk3bpy0mlh4c"; depends=[rgl]; }; + NNS = derive2 { name="NNS"; version="0.3.1"; sha256="15aczifs0dbqixaqg7w97cxc17hvphgzdg56zzzfjdwr4y9g2jrk"; depends=[data_table rgl stringr]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; @@ -1895,7 +1954,7 @@ in with self; { NPMPM = derive2 { name="NPMPM"; version="1.0"; sha256="14rjj48vfj4wv1na5v181jby016afx4ak1fs0f3g1fif4kbgbdx0"; depends=[]; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; - NPflow = derive2 { name="NPflow"; version="0.10.1"; sha256="0lq3xchw932qjfk0akvxqpy50jnn4gwmyghvb8iabc7scl6px97n"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; + NPflow = derive2 { name="NPflow"; version="0.12.0"; sha256="0vdnhwls80yaqh9mnfprks4l609jf4vcic1x99rji1gjmawhs93r"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; }; NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; }; NSM3 = derive2 { name="NSM3"; version="1.9"; sha256="0ianzczznigkbialzdm43w9wkgnsx24393v7hnxcvxqczzhl795h"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; @@ -1918,8 +1977,10 @@ in with self; { NetSim = derive2 { name="NetSim"; version="0.9"; sha256="07h4qwz64k8zj8c2mx23cbnhg4rqrb4nfh20xw98kspz7cisdg6d"; depends=[Rcpp]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.2"; sha256="0wsmz7db8q2fycz6rfbbfs67ccj857y9zs4d80k1gnqazgj5whkn"; depends=[]; }; + NetworkChange = derive2 { name="NetworkChange"; version="0.1"; sha256="1820zw6gwf3qy7c1qwi32ww08by1amwajrqqw5zsgkh935xrx1sz"; depends=[abind ggplot2 LaplacesDemon MASS MCMCpack mvtnorm RColorBrewer Rmpfr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.0.1"; sha256="09fqlnpdibf9jr5mw2pzmwi66f6cjz8rmm8jay0cv2bami7jhy2a"; depends=[IsingFit IsingSampler qgraph reshape2]; }; - NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.1"; sha256="0lgkj7r2rsf91ig5f1w85vpzy8aa43pk8vjif15ci3any82yz4is"; depends=[dplyr expm ggplot2 Matrix]; }; + NetworkInference = derive2 { name="NetworkInference"; version="1.0.0"; sha256="1x0p20v5imh3ixypdnnjqsvk83lxr8v0i2irvmzxwaq5m0j1pfzc"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp]; }; + NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.2"; sha256="0c10nahybjd1n0yr78ynbsdnkfa0p7kz6dx3rbwxwsp3x4mrcd6y"; depends=[dplyr expm ggplot2 Matrix]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.0"; sha256="04r0716vlv54cjybxspq61ahb12f2i8krhils5layr436k7slm07"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; NightDay = derive2 { name="NightDay"; version="1.0.1"; sha256="0vkpr2jwhgghiiiaiglaj1b9pz25fcsl628c9nsp9zyl67982wz1"; depends=[maps]; }; @@ -1928,15 +1989,15 @@ in with self; { NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; - NonCompart = derive2 { name="NonCompart"; version="0.2.6"; sha256="1zvpgdir2wzbg20l4v2fdpf1f3kw78pzx7kg1m8v83738f9jhc3a"; depends=[]; }; + NonCompart = derive2 { name="NonCompart"; version="0.3.0"; sha256="0c6sdsigfmkan1q728n6v3s2lyg0y24cdbl7xdjfgdwsvg67kbdb"; depends=[]; }; NonpModelCheck = derive2 { name="NonpModelCheck"; version="2.0"; sha256="0i87v666i0fc1c4rwxl6zmal7dp4ph7l7ki5vck9wykm28qr6q5y"; depends=[dr]; }; - NormPsy = derive2 { name="NormPsy"; version="1.0.4"; sha256="07xx3n9g8ka9k6zqkx1963nqbqi6qlnkxy0fary7l1arv7vjly4s"; depends=[lcmm]; }; + NormPsy = derive2 { name="NormPsy"; version="1.0.5"; sha256="0zhv6p9ffm2g02nr302j3qc6mrk5n4xxznircgbp4jx7hcj7cf1m"; depends=[lcmm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.2-2"; sha256="0r3yz8x123f0p9d165074ylnmf3hkyyc4h1758018m9iqj5cqp2h"; depends=[curl XML]; }; - OBsMD = derive2 { name="OBsMD"; version="0.1-0.4"; sha256="00hakq94lkkx9iscxm3sv4hslyqsnjcxs74l6v89bm8p5ds8dlzl"; depends=[]; }; + OBsMD = derive2 { name="OBsMD"; version="0.2-0.00"; sha256="16km0v6678lbgh9n2d9nvmpq6k7d2gicc68wnfy4kvn9vmpr79cz"; depends=[Rcpp]; }; OCA = derive2 { name="OCA"; version="0.1"; sha256="0kaf46gic8gp8f98y68kqvgm1baicwgvarfiwry1j0bd2rjad64d"; depends=[]; }; ODB = derive2 { name="ODB"; version="1.1.1"; sha256="1hha4rkbc2zh3karkqa0vn4v0nmcd7sljcymy1nh28bx1gx2ffgs"; depends=[DBI RJDBC]; }; ODMconverter = derive2 { name="ODMconverter"; version="2.3"; sha256="07j9p2hfx3almd5n3j0clc1alj5wzrnzljd9w13bbd6nrvil1krm"; depends=[xlsx XML]; }; @@ -1956,10 +2017,11 @@ in with self; { ORDER2PARENT = derive2 { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; - OSMscale = derive2 { name="OSMscale"; version="0.4.1"; sha256="175m15mas5kpqq93czlgiimkxvl4mg40dw04il1jnk4gypj4ifjq"; depends=[berryFunctions OpenStreetMap sp]; }; + OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; + OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; }; OTE = derive2 { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; }; OTRselect = derive2 { name="OTRselect"; version="1.0"; sha256="1bh14228yz552ngywjf1qyh1isqj4cgiy7n7d4zg8dpqwxr04ykp"; depends=[lars survival]; }; - OTUtable = derive2 { name="OTUtable"; version="1.0.0"; sha256="0wdzi1ii5hwvr2fby26ydc4jhwl0gyi24jnl4yib6621hnjgv10y"; depends=[]; }; + OTUtable = derive2 { name="OTUtable"; version="1.1.0"; sha256="1q1vr5jkzmx2ha119af8hxml23l7lla32ap7g7nzlrdmbnbhzv80"; depends=[]; }; OUwie = derive2 { name="OUwie"; version="1.50"; sha256="1gzgwax9kmcr6rl6nv10xn536nbkjhmg6sqax58xxinc00ykdx75"; depends=[ape corHMM corpcor expm lattice nloptr numDeriv paleotree phangorn phytools Rmpfr]; }; Oarray = derive2 { name="Oarray"; version="1.4-5"; sha256="1w66vqxvqyrp2h6acnbg3xy7cp6j2dgvzmqqk564kvivbn40vyy4"; depends=[]; }; OasisR = derive2 { name="OasisR"; version="2.0.1"; sha256="0knkq33yf0b5flbkmc5ng4ys4x840rzkfrr26jcp7ri3bqg87lqv"; depends=[birk rgdal rgeos spdep]; }; @@ -1974,10 +2036,10 @@ in with self; { OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.2.0"; sha256="1ckagq14w9923a4x7pk9mfzqcfayi00apwd2kvqzgd0s6355r1q7"; depends=[digest ggplot2 httpRequest plyr RCurl reshape2 rgdal rjson sp triangle xtable]; }; OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; }; - OpenImageR = derive2 { name="OpenImageR"; version="1.0.4"; sha256="1bzfbfckc7yaflsd74c5zs2ig4rkd3q9fzxxrw4kc0vgijalyf3p"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; - OpenML = derive2 { name="OpenML"; version="1.2"; sha256="16zvxr45jcw4z30jmg9l6xdlkq76wbi89xj8c328qkwlghik17sy"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; + OpenImageR = derive2 { name="OpenImageR"; version="1.0.5"; sha256="152vmms1phaqqipl6xgmi24pzf26a0m28kj26snjyhz4cg8sqhai"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; }; + OpenML = derive2 { name="OpenML"; version="1.3"; sha256="0gp8d6prkjwjwbk3wp59z7l2y9950pcz1kn2vab37990axw64gyd"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; }; OpenMPController = derive2 { name="OpenMPController"; version="0.1-2"; sha256="1cpsbjmqql0fsjc1xv323pfkhfr9vrcv5g4j3p1qc5zn4z9pq7r6"; depends=[]; }; - OpenMx = derive2 { name="OpenMx"; version="2.7.4"; sha256="18zgypwjd37fcmsc3gzsa3ww6b7l9y9sm7jgj5x79hzqn0mfknfv"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.7.10"; sha256="1q08c1pjy2q3kjfb62qx13g0sxkp2pkxs7x8vikb740ck52vfcrh"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.10"; sha256="0ikw8l9hffcaa094y6pnvyc3ly5jb02djaakz668ba15a0yw0wmb"; depends=[abind colorspace GPArotation plyr psych pvclust rgl stringr XML]; }; OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; @@ -2001,9 +2063,9 @@ in with self; { OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; }; OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; }; P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; }; - PAC = derive2 { name="PAC"; version="1.0.6"; sha256="04jbyxgw8cpbjajlnal66y1kfjnxd4v6gp32wg7cdp7cmz0yxbii"; depends=[dplyr igraph parmigene Rcpp]; }; + PAC = derive2 { name="PAC"; version="1.0.7"; sha256="0khrhn7f6sps8qyivn7vs60vycfhvzllwcgfszk1fvnwgahg5918"; depends=[dplyr igraph infotheo parmigene Rcpp]; }; PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; }; - PAFit = derive2 { name="PAFit"; version="0.9.6"; sha256="0jallwvzrjw4vv1gnszlhx6jv8g67wx41kgcil0yz8867wf1sxkb"; depends=[RColorBrewer Rcpp VGAM]; }; + PAFit = derive2 { name="PAFit"; version="0.9.9.0"; sha256="0m8q3rahi41zp75b8g9nbyq1ldbx0hkfknn1pchgc2vxppn973cr"; depends=[magicaxis MASS RColorBrewer Rcpp VGAM]; }; PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; }; @@ -2025,9 +2087,11 @@ in with self; { PBSmapping = derive2 { name="PBSmapping"; version="2.69.76"; sha256="1fci7mx5m3jqy92nqfaw5w5yd5rw6f0bk5kya1v0mmvf7j715kar"; depends=[]; }; PBSmodelling = derive2 { name="PBSmodelling"; version="2.67.266"; sha256="0ych9k20x0m71gkdrpwv5jnx6pfsk45wwsaaamy32cmnhd3y14sq"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; + PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="2.2"; sha256="0gbmiy2mhz8lgp0pcjby4ny8a28wlx1xrsa2lknzxn4d0m2csxjn"; depends=[]; }; PCDSpline = derive2 { name="PCDSpline"; version="1.0"; sha256="15kmvcwvwlsr1107n7mfajvf9b1kcslnhsdx0drjjhsvq193qrqa"; depends=[matrixcalc nleqslv]; }; - PCGSE = derive2 { name="PCGSE"; version="0.3"; sha256="1fb4in6b8d5n0zjfys33y35n3srqpzrnyk2qhzvpjsjf7jmn9898"; depends=[MASS RMTstat safe]; }; + PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; + PCGSE = derive2 { name="PCGSE"; version="0.4"; sha256="0ky1nzhz6v9n34kas9nw2scc6ip7av19g09zcsxaa9436nhip4f6"; depends=[MASS RMTstat safe]; }; PCICt = derive2 { name="PCICt"; version="0.5-4"; sha256="1g17hxs00dlnb6p0av6l7j99qy00555f80nk1i1i1x87fszp3axa"; depends=[]; }; PCIT = derive2 { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; }; PCPS = derive2 { name="PCPS"; version="1.0.3"; sha256="1ys3xp1nripy5zkq25byak9k6yf5rdbfnww8j13yc469428ip8q0"; depends=[ape phylobase picante SYNCSA vegan]; }; @@ -2035,7 +2099,7 @@ in with self; { PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.6"; sha256="0b1bbf6namll2afxh61qz4xz4ipzipdnfhbcqlragmyj9pisaf45"; depends=[GPArotation MASS Matrix ThreeWay]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; - PDQutils = derive2 { name="PDQutils"; version="0.1.5"; sha256="1k9zfdsxyn384ymq920y0p0fps6svlq08sp13ayg0mindsswmp3k"; depends=[moments orthopolynom]; }; + PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.0-1"; sha256="0zfvp3ngc4320sh6r6y746zxigr2wqgaqasnlkv3hxhzpzxq08lj"; depends=[bvls Matrix pracma RSEIS]; }; @@ -2044,7 +2108,6 @@ in with self; { PGEE = derive2 { name="PGEE"; version="1.4"; sha256="1hzqx1a3zgg07dqw7yyykvlaxjqpr04ch48bmnl4byy6izfghy8m"; depends=[MASS mvtnorm]; }; PGICA = derive2 { name="PGICA"; version="1.0"; sha256="0qxa5hw2s3mndjvk8lb82pcbyj1kbdclx4j4xa8jq0lcj180abi9"; depends=[fastICA]; }; PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; }; - PGRdup = derive2 { name="PGRdup"; version="0.2.3"; sha256="10nm71kj746ap7qx1qr7y8xm3m732blkaac20lwif2zljl3cy2dl"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; }; PHENIX = derive2 { name="PHENIX"; version="1.3"; sha256="1b9sxy2slfzls2snif738sjw34k3hs2i55g1yb1kbx06702q47ak"; depends=[ppcor SuppDists]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.8"; sha256="17lmjfbwf8j68zzzhdvppyjacdsmy4zmcfj0pcjsw5j6m361hvh6"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; }; @@ -2066,9 +2129,11 @@ in with self; { PMCMR = derive2 { name="PMCMR"; version="4.1"; sha256="0mfms8wvdwcakkgsnrb2wawp07hvlr7s6cvl54kxv7f5fqllw5kc"; depends=[]; }; POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; }; POT = derive2 { name="POT"; version="1.1-6"; sha256="08av53rnishk3mhwrb6ydbgc3n9nwi87jlx5vmag3vpiidhn1laj"; depends=[]; }; + POUMM = derive2 { name="POUMM"; version="1.2.2"; sha256="0j44qlwx602iy7n6xj40v7gg5dsfrn4zqmkb89bji8fjixpnyhaa"; depends=[ape coda data_table foreach GGally ggplot2 gsl Matrix Rcpp RcppArmadillo]; }; PP = derive2 { name="PP"; version="0.5.3"; sha256="17y1v2536n7ap0kvllwkmndmdjf4wgwl171c053ph45krv37mscf"; depends=[Rcpp]; }; PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; }; PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.1"; sha256="02073yxdwns9mnnjvw13ydw1s3vrxl53szcd9jy8ibj78vnm57r3"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; }; + PRIMME = derive2 { name="PRIMME"; version="2.1-0"; sha256="1sjgy923ppp28qhkvhgv2xmx7b7aqd17g60af1my44ygdsd8c1kw"; depends=[Matrix Rcpp]; }; PRIMsrc = derive2 { name="PRIMsrc"; version="0.6.3"; sha256="18vk968dz9508bnnyhq2wz7py72ld42c0ah22a7d8n3nwx26ldbd"; depends=[glmnet Hmisc MASS survival]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-6"; sha256="1yzcx4js0xaxp1mp7ginhfz8jji49rkw3x15a9mlmpz260gkfs98"; depends=[ggplot2 gplots Matrix]; }; PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; }; @@ -2081,19 +2146,19 @@ in with self; { PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; PSCBS = derive2 { name="PSCBS"; version="0.62.0"; sha256="15r3rpqd4fpnssbbpkw0vxmgl3akid5r8n20nvr50bfzrl0w8j7f"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.3"; sha256="0x2w0prcnyy82zvr0g2h18rc67r8wzvax3h9psk9dd4il8s4xfpw"; depends=[cluster data_table forecast knitr]; }; - PSM = derive2 { name="PSM"; version="0.8-10"; sha256="1s60fr85xn3ynpvsbc3nw7vgz6h6jxy3yii1w6jpkw3iwl4bgn84"; depends=[deSolve MASS numDeriv ucminf]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PTAk = derive2 { name="PTAk"; version="1.2-12"; sha256="1phxh2qbzsj2ia2dr6z30lhi765lk1m8lbk57sdgvm14fmi9v5nk"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.0"; sha256="10if2hh69yysi2y82m7is74hmzw2xpxijgb8bhy1d4g9n9lqidfs"; depends=[doParallel]; }; - PTXQC = derive2 { name="PTXQC"; version="0.82.2"; sha256="1slx4c2s3agrpfxhr4fs2gy9mhiqvnhsqs06m2wkan909fkjdw1z"; depends=[data_table ggdendro ggplot2 gridExtra gtable plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; + PTXQC = derive2 { name="PTXQC"; version="0.82.3"; sha256="1nhdqdv6nsgm3y9d5j5r1142h8vkw6k7frg1rv71z49bf4zw2l4j"; depends=[data_table ggdendro ggplot2 gridExtra gtable plyr proto RColorBrewer reshape2 rmarkdown seqinr yaml]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; - PWEALL = derive2 { name="PWEALL"; version="1.0.0"; sha256="1m2wg0fzmlf9xbynr7mw6izkjp3r32fm4l6njrfkcr9gqfz2dab8"; depends=[survival]; }; + PWEALL = derive2 { name="PWEALL"; version="1.1.0"; sha256="0k66wzyvy89zfnsyrgbj5vr4w6c008lw2jlfkrm11l01vvgy7wgf"; depends=[survival]; }; + PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="0.99.9"; sha256="019kggrp956jry59qg5s2jwy7mcg3vvjf9741q2zvxhr0dqn86ps"; depends=[cluster dplyr dygraphs futile_logger ggmap httr leaflet lubridate mapproj maps maptools MazamaSpatialUtils openair png RColorBrewer RCurl readr reshape2 RgoogleMaps sp stringr xts zoo]; }; PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; }; Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; }; PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; }; PairedData = derive2 { name="PairedData"; version="1.0.1"; sha256="025h5wjsh9c78bg6gmg6p6kvv2s6d5x7fzn3mp42mlybq0ry78p0"; depends=[ggplot2 gld lattice MASS mvtnorm]; }; - PanJen = derive2 { name="PanJen"; version="1.1"; sha256="00bvmwskawmi4x89wcn6k37nrdxfil7j1n6kc368yxvrfwvxgssy"; depends=[Formula lasso2 mgcv RColorBrewer]; }; + PanJen = derive2 { name="PanJen"; version="1.3"; sha256="1n7qw3vwppv1dfpp5z2ybcy9gg73kk0zbzmdi4f5y1fri2d1sli4"; depends=[Formula lasso2 mgcv RColorBrewer]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; @@ -2104,20 +2169,19 @@ in with self; { ParentOffspring = derive2 { name="ParentOffspring"; version="1.0"; sha256="117g8h0k65f2cjffigl8n4x37y41rr2kz33qn2awyi876nd3mh93"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; Partiallyoverlapping = derive2 { name="Partiallyoverlapping"; version="1.0"; sha256="1wwfq0zwf2b2wlq4pwhw92d02f715l7bkc0si7gndk0mp2pibcrx"; depends=[]; }; - Pasha = derive2 { name="Pasha"; version="0.99.21"; sha256="0z77n5wplapdfcqxbak7mg58a9nnnwwqcznah5lswlwa0prz18jc"; depends=[Biostrings bitops GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; PathSelectMP = derive2 { name="PathSelectMP"; version="1.0"; sha256="19gkd7il4whxp1mm4pinlrl8yj09b5sknz8c4g75n2hhh96libns"; depends=[mice MplusAutomation]; }; PatternClass = derive2 { name="PatternClass"; version="1.7.1"; sha256="11r4p4s2pm0c4fmnpijzz5srhpai444mbx5nszhkssfsp9rh7cm9"; depends=[SDMTools]; }; PdPDB = derive2 { name="PdPDB"; version="1.0"; sha256="1rnphdklyzznpzf57gwlnr498612d54kl5jkqnza6h8if7nqr4kd"; depends=[plyr]; }; Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; }; Peaks = derive2 { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; }; - PearsonDS = derive2 { name="PearsonDS"; version="0.98"; sha256="11y44j7js67k4kgg2rdc3y23ckaih63fvm5li7z6p6d8anlx1fcv"; depends=[]; }; + PearsonDS = derive2 { name="PearsonDS"; version="1.0"; sha256="1fnlkadq53vl0gn3b066kvxh1s3pljkpxlpfbyp8jcyp8gxm6i8n"; depends=[]; }; PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; PeerPerformance = derive2 { name="PeerPerformance"; version="2.1.2"; sha256="07as5csvrlr3a55miadhbcvjrjag7g69wxmb8z7rpipppa8f9q7y"; depends=[lmtest sandwich snow]; }; PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; PepPrep = derive2 { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; }; PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; }; - Peptides = derive2 { name="Peptides"; version="1.2.1"; sha256="0s6d3b9qgc38az11pa7r427dzcfhf2a2hl4c97av8c43hfvyrnzi"; depends=[]; }; + Peptides = derive2 { name="Peptides"; version="2.0.0"; sha256="0m0xhimi5pjc8nd0n9x83zwciaa14yjixfmwnnaxrmq0b7abgs0b"; depends=[]; }; PerFit = derive2 { name="PerFit"; version="1.4.1"; sha256="0mzd9yrgsswxlhljlk8nxi0dhy3k4a9jax9w9c9s29j4m7z9jf01"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; }; PerMallows = derive2 { name="PerMallows"; version="1.12"; sha256="0f886q0vgplrprzwrjcjh4g92i1nzkzpzp4qhr4n9kkz8rrxf125"; depends=[Rcpp]; }; Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; }; @@ -2149,28 +2213,29 @@ in with self; { PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2"; sha256="1j593sc344h9iy7if1ppihx2qd73dv32d77d8ckac43i7b2lig24"; depends=[]; }; PoisBinNonNor = derive2 { name="PoisBinNonNor"; version="1.1"; sha256="02xa028jrc50fmrasidjsh5h6z9i8gyyc68q6809ic1bs23sq06i"; depends=[BB corpcor Matrix mvtnorm]; }; PoisBinOrd = derive2 { name="PoisBinOrd"; version="1.2"; sha256="0ig3iqj0h2v4a4ahf8l2nfvjx4846skkdk5sb7qab8bkqqqkmbpy"; depends=[corpcor GenOrd Matrix mvtnorm]; }; - PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.2"; sha256="0bpgr3zzma04l8652da39vifszjyq17sx2hdq5nsqw3fb2s13zyh"; depends=[BB corpcor GenOrd MASS Matrix]; }; - PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.3"; sha256="0y29p06q977qiybzgay7yx779blv29b8i1vmxfwklc5bm3xiplri"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; - PoisNonNor = derive2 { name="PoisNonNor"; version="1.2"; sha256="01mixrlpk1vcqh9v5qiz9vkn9rkwks3hss91sjyyw3jjqpggxvp6"; depends=[BB corpcor MASS Matrix]; }; + PoisBinOrdNonNor = derive2 { name="PoisBinOrdNonNor"; version="1.3"; sha256="0cwp9zkw89bdvak7jrjmw0n1c1xkkw0kb1l5kn8vrpm7xkwzva8h"; depends=[BB corpcor GenOrd MASS Matrix]; }; + PoisBinOrdNor = derive2 { name="PoisBinOrdNor"; version="1.4"; sha256="0sgj76crzb7byi0nbx50y0v8zr02b8jl1qfzapj46l2f8z78vkrm"; depends=[corpcor GenOrd Matrix mvtnorm psych]; }; + PoisNonNor = derive2 { name="PoisNonNor"; version="1.3"; sha256="0p39sad9wiwrhgg9vdx0gzgd4kf2wwxjzmyav04q8ijbmqp0mjbw"; depends=[BB corpcor MASS Matrix]; }; PoisNor = derive2 { name="PoisNor"; version="1.1"; sha256="0z5h8rdb7kjqzasrdvkpkvwv05rfazv92cza8pln1qrvi6cdk5f3"; depends=[corpcor Matrix mvtnorm]; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; + Polychrome = derive2 { name="Polychrome"; version="0.8.2"; sha256="1ab7vzvrql7j8d1z5ki7dl5s03b5c9vphx5wd6v8cv1nadxfyqgc"; depends=[colorspace rgl]; }; PolynomF = derive2 { name="PolynomF"; version="0.94"; sha256="006ds50ivq91v2jyhgpm5rfaipxbzsnljrki6fjplcw07g0frz71"; depends=[]; }; Pomic = derive2 { name="Pomic"; version="1.0.3"; sha256="16c0z50zlr9vb1g3j7zdgm2nx595mbwmr4hry184fvkv2hrkk4xc"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.3.2"; sha256="1lvzqpij4dqbw144ya25bhlx96mwaxz932r0bl3jsx1si9ijb8xz"; depends=[codetools dplyr ggplot2 MASS mvtnorm]; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; - PopGenome = derive2 { name="PopGenome"; version="2.2.0"; sha256="1rwqv7pa5is2ciyx25q042jxk7jwvr7v64r2z32ak8dc1218x35a"; depends=[ff]; }; + PopGenome = derive2 { name="PopGenome"; version="2.2.3"; sha256="1v8gwsp45vbqrbvcg4z6s29mnqii7a0cjm4df8y6lyh296xqma7w"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.2.1"; sha256="09az5wa0zai6axhvrljqdjn74nb7jikqwjqy8f570qxb6jbgfgay"; depends=[BGLR qtl rrBLUP]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.0.3636"; sha256="0xva3ff8lz05f1jvx8hgn8rpgr658fjhf3xyh9ga1r7dii13ld50"; depends=[foreach PerformanceAnalytics xts zoo]; }; PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; - PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.7"; sha256="043bpyrzl5r7gifi450l162sp7l5pgb1p6arfbf118i0jg0m61j9"; depends=[ggplot2 rJava zoo]; }; + PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; PottsUtils = derive2 { name="PottsUtils"; version="0.3-2"; sha256="05ds0a7jq63zxr3jh66a0df0idzhis76qv6inydsjk2majadj3zv"; depends=[miscF]; }; PoweR = derive2 { name="PoweR"; version="1.0.5"; sha256="0zr2p2hyxdh194n3s0g71q9zyvl67czp0wc39zl3fivfk3zkf98r"; depends=[Rcpp RcppArmadillo]; }; Power2Stage = derive2 { name="Power2Stage"; version="0.4-5"; sha256="0wjry83dkrnl6bblb0688hx5ihwwkya05dwb9nrnv39033ksd0a9"; depends=[mvtnorm PowerTOST]; }; - PowerTOST = derive2 { name="PowerTOST"; version="1.4-3"; sha256="1yxxg0y8w6g5138wznd3fil3pmizb20ar1h5gavlbil5b1bhhm44"; depends=[cubature mvtnorm]; }; + PowerTOST = derive2 { name="PowerTOST"; version="1.4-4"; sha256="0dy2zwq2f1g9j295ppc3mwdxabh88kkkw81l0cq8qsvz886iz1mf"; depends=[cubature mvtnorm]; }; PowerUpR = derive2 { name="PowerUpR"; version="0.1.3"; sha256="1znhkyxl8qrs288zf0cr6sxgq6ir029fmilda0k73scc6k1jxz7f"; depends=[nloptr]; }; PracTools = derive2 { name="PracTools"; version="0.4"; sha256="1klknzbpgjyvrws6d7gwrdmglc16xag3pa3i8rk0zg62wvyb4l1v"; depends=[]; }; PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; @@ -2188,7 +2253,7 @@ in with self; { ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; }; ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; }; ProbitSpatial = derive2 { name="ProbitSpatial"; version="1.0"; sha256="0pq5bsjd00qc83c7x8vlpsxdksywlnfg7rlsvb6j21fz9wi3hpas"; depends=[Matrix numDeriv RANN Rcpp RcppEigen speedglm]; }; - ProfessR = derive2 { name="ProfessR"; version="2.3"; sha256="1y88as4xjvdm2v2ms5l7c6ziq7sll6qkrpgzdd4xnbcjx7c0g9w8"; depends=[RPMG]; }; + ProfessR = derive2 { name="ProfessR"; version="2.3-5"; sha256="0q04mjfr2g2l2md8c7nampivg6z4wjv6nfcq13b94sgixak0ww6f"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.1"; sha256="16cdp1nimhg1sd2x0qbffm7clgk54p0838y688z8lnsrjaggmb0x"; depends=[MASS nlme]; }; ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.7"; sha256="0jf8r9lbczvjvnzf15lz6fm31naxm1fpqni88484yrd6vpxjacq6"; depends=[]; }; @@ -2207,8 +2272,7 @@ in with self; { PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; }; PwrGSD = derive2 { name="PwrGSD"; version="2.000"; sha256="0qxvws9mfrnqw5s24qhqk6cbffjm13z7awyxdmnilazghpiq1p7s"; depends=[survival]; }; PythonInR = derive2 { name="PythonInR"; version="0.1-3"; sha256="0p4h30wqsz8czz6r4xjg5q79190hq242x9fsaw7v5433px1gmr44"; depends=[pack R6]; }; - QCA = derive2 { name="QCA"; version="2.5"; sha256="0f0gia23aqkhvxna15vcck75im4r3nc6mbs1svg5hldc33088wh7"; depends=[fastdigest lpSolve shiny venn]; }; - QCA3 = derive2 { name="QCA3"; version="0.0-8"; sha256="1cqk5hhx57c4ayg0kn4gz3sfwm1jik96a80psfyb7cnmbxwdgw2s"; depends=[lpSolveAPI]; }; + QCA = derive2 { name="QCA"; version="2.6"; sha256="1f518s990i23yiddkp2d756864nfkk6zadrl373ibqlgl3ahp74b"; depends=[fastdigest lpSolve shiny venn]; }; QCAGUI = derive2 { name="QCAGUI"; version="2.5"; sha256="1v15rd5wmdx1zdssklbchw71cr9v1mjp1mfkv5kg2xa3hp0x2hz9"; depends=[QCA]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-1"; sha256="0rp1mcgp21m4wi301kwb7vzilb4z0pq78h9wavkpyxnq0ch6hnlh"; depends=[lpSolve]; }; @@ -2220,7 +2284,7 @@ in with self; { QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; }; QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; }; QGglmm = derive2 { name="QGglmm"; version="0.5.1"; sha256="1112w9dwbr9smxa869w4833iw1vclscr1zbjn2f0xklnpn3nb40d"; depends=[mvtnorm R2Cuba]; }; - QICD = derive2 { name="QICD"; version="1.1.1"; sha256="0mg17w62yzgslifbc08vglsxwiczicgzilczidpjwlcrg3lq8jjc"; depends=[]; }; + QICD = derive2 { name="QICD"; version="1.2.0"; sha256="0ppyl978y7md2n9m4kwhbrgdr5i3df0yw124x84f53w4acipgz5q"; depends=[]; }; QNB = derive2 { name="QNB"; version="1.1.7"; sha256="1xakzwsaf5297nxx5a193ji0dn30rw3yly4rhdjqabgrh3fgzv92"; depends=[locfit]; }; QPot = derive2 { name="QPot"; version="1.1"; sha256="1ivkk5wdd1lp6v4hwmpr9g230kd7zgmj0vnv5fw0svwpb8zzz14x"; depends=[MASS]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; @@ -2242,7 +2306,7 @@ in with self; { QuantTools = derive2 { name="QuantTools"; version="0.5.4"; sha256="01xn9ksb2v3glqpxhdizp8b0786azkm8kv6xxdqk3q7ysm44lac1"; depends=[data_table fasttime Rcpp RCurl readxl]; }; QuantifQuantile = derive2 { name="QuantifQuantile"; version="2.2"; sha256="01bdz8a6nhjil6n2z62x5g41v3d6md5v16g0ladsl5zc8raivqdq"; depends=[rgl]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; - QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.3"; sha256="1j7v6cg3rafs9a8qmlmqk1an39kd6h6pbspd7zalmnq1v1a10m91"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; + QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.4"; sha256="1dqibl4rnf1qbk44srh8ndka0ni7a463hlpf7sdpgx2b57414jkd"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; }; QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-8"; sha256="113pxmvwwn331g5dcv2zwsvvi5jgc1v41f38sw9gms06i8x3a7q6"; depends=[edgeR mgcv pracma]; }; Quor = derive2 { name="Quor"; version="0.1"; sha256="1ncl4pj472m881fqndcm6jzn4jkwbnzpc639c9vy5mxa4z569i1g"; depends=[combinat]; }; R_cache = derive2 { name="R.cache"; version="0.12.0"; sha256="006x52w9r8phw5hgqmyp0bz8z42vn8p5yibibnzi1sfa1xlw8iyx"; depends=[digest R_methodsS3 R_oo R_utils]; }; @@ -2252,7 +2316,7 @@ in with self; { R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; }; R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; }; R_oo = derive2 { name="R.oo"; version="1.21.0"; sha256="0723gxjazgqq7v3lwnl7axw3brzcnizvhbd71ijkkv8mz31fwp34"; depends=[R_methodsS3]; }; - R_rsp = derive2 { name="R.rsp"; version="0.40.0"; sha256="1hz5fnxz30m3cc7x7ha1swx4pn8c2244z6ka6v9m3l5lpdgc1367"; depends=[R_cache R_methodsS3 R_oo R_utils]; }; + R_rsp = derive2 { name="R.rsp"; version="0.41.0"; sha256="01l430avj5ggmdsla2kiriix72g0dlzx9klniq321bs0za808v3c"; depends=[R_cache R_methodsS3 R_oo R_utils]; }; R_utils = derive2 { name="R.utils"; version="2.5.0"; sha256="17q3w5dlly5xl2srrzsmf9s7vs5d576vqbcs6sr2p5x4qvqa1q8s"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; @@ -2268,12 +2332,13 @@ in with self; { R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.15"; sha256="1v01fbcc7hx6mswn4gkwpm6k171956wk51ls6sgca1i6ia6ckmli"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.5-7"; sha256="0h1d27cddyacx5m5f23rlki97iwni7clffmb2k7a4bznlnjhn50a"; depends=[abind coda R2WinBUGS rjags]; }; + R2ucare = derive2 { name="R2ucare"; version="1.0.0"; sha256="1nh2wf3syxjz9flxhf8x9fd2c2ndn4dha4k34lz1nq5j4qz7wfp1"; depends=[RMark stringr]; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; }; R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; }; R6 = derive2 { name="R6"; version="2.2.0"; sha256="1ir51pb0y6yj05qaxsflk4a6hv8n73cwlb0qajcskbrz632dsyvx"; depends=[]; }; R6Frame = derive2 { name="R6Frame"; version="0.1.0"; sha256="0ib0van2qk0p89qmii8naj1jx56i6j7srvydzm41pyq2xdg0bmga"; depends=[data_table lazyeval R6]; }; - RAC = derive2 { name="RAC"; version="1.0.1"; sha256="1idy7kik0gfzd404xs8g2mg5ycinld1wp1a9lxd2wqmyc8ghpd0y"; depends=[matrixStats plotrix rstudioapi]; }; + RAC = derive2 { name="RAC"; version="1.1.1"; sha256="0ybyjjpw8f4wbdhkhbnjg8wy82ibxsywyjrsi406l2knnkx0mvmg"; depends=[matrixStats plotrix rstudioapi]; }; RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; RADami = derive2 { name="RADami"; version="1.1-2"; sha256="1k4g58r64i19j8wj3d202283bnwaxf19l7ckiz29dlw4zidx6mvz"; depends=[ape Biostrings geiger hierfstat IRanges phangorn]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; @@ -2286,17 +2351,17 @@ in with self; { RANN_L1 = derive2 { name="RANN.L1"; version="2.5"; sha256="0sjf92hdw9jczvq1wl5syckhvik7wv0k9vrrgw4nnnsabc25v9pf"; depends=[]; }; RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; }; RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; }; - RAdwords = derive2 { name="RAdwords"; version="0.1.11"; sha256="069ik7irl68chwpfdpp06ng2w272kr0cx7fjd1c6zz4nrsw8zxrn"; depends=[RCurl rjson]; }; + RAdwords = derive2 { name="RAdwords"; version="0.1.12"; sha256="0g2lbrqqh3azyc2xlafgqnd1langjg8xhma1njjcd3jn7q21mhnk"; depends=[RCurl rjson]; }; + RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.3"; sha256="0g5sdq6sl7cvsj9fgqhcdxjkrfi53078r0mbzvf69cvz38y5x3sm"; depends=[]; }; RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; }; RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; }; RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; }; RAtmosphere = derive2 { name="RAtmosphere"; version="1.1"; sha256="0mk43bq28hlrjwaycsxca458k8xf00q58czgc17d8yx3kz17a5i0"; depends=[]; }; - RBMRB = derive2 { name="RBMRB"; version="2.0.2"; sha256="0znkw5n123xhn902nyv1p0bpm0djyscsyqdab3bpps0n35mfxlq5"; depends=[data_table ggplot2 httr plotly rjson]; }; + RBMRB = derive2 { name="RBMRB"; version="2.0.4"; sha256="0l6w3j4dykxd5r3h3qj7hsz77657bhif7qk020hvmcg17jszr9a2"; depends=[data_table ggplot2 httr plotly rjson]; }; RBPcurve = derive2 { name="RBPcurve"; version="1.1"; sha256="0g243h4zpjigayf7kryfpdvshycaxz12ifqilyk3ylz91kk61nmb"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; - RBerkeley = derive2 { name="RBerkeley"; version="0.7-5"; sha256="049qvlpqwcaj82fdl815c0b2il7jbs6karibqpkq0fa3hq0q4hzz"; depends=[]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; RCALI = derive2 { name="RCALI"; version="0.2-17"; sha256="1bic7dwxkvgxl3a26glxm6h6gmq4xad70dbrnrnb2d6n5v1dnniw"; depends=[splancs]; }; - RCEIM = derive2 { name="RCEIM"; version="0.2"; sha256="0l3lfx3zqxf310rhvjkn977xchxzi7cbzij3ks0nqlx55x5ica9w"; depends=[]; }; + RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; }; RCPmod = derive2 { name="RCPmod"; version="2.154"; sha256="0x4jk5xv3z3nyi99rv9fh2akhyk4s1736fzsxynqxfm6br3k8mc6"; depends=[fishMod glmnet gtools MASS]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; @@ -2307,7 +2372,6 @@ in with self; { RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; - RCryptsy = derive2 { name="RCryptsy"; version="0.4"; sha256="01rz9wz5y1k77mjw4zs0jng3k4zwqda32m5xvw6kx7vkgzfas6q0"; depends=[RCurl RJSONIO]; }; RCurl = derive2 { name="RCurl"; version="1.95-4.8"; sha256="1yrbm8sypizy18qxkl6534fk2gf2ijxhahw6qldk9v5v3cjl68p7"; depends=[bitops]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="0.9-5"; sha256="08q1ixwnxx4j2nwdynswbdy6jw2r97c5a0zlwhaxr888c7hcv6ff"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; @@ -2318,7 +2382,7 @@ in with self; { RDieHarder = derive2 { name="RDieHarder"; version="0.1.3"; sha256="0wls7b0qfbi6hsq9xdywi4mdhim5b6mrzhvyrm9dxp9z1k7imz6m"; depends=[]; }; RDocumentation = derive2 { name="RDocumentation"; version="0.8.0"; sha256="0k733c6b2ggwqry13ynnm9bmnrlf1sszya061wx2w52d3x378r2g"; depends=[githubinstall httr proto rjson]; }; RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; }; - REAT = derive2 { name="REAT"; version="1.3.0"; sha256="1vm4bxvvwlx1qmnss4zkbh7i29yy95macd79hrf78c7sfc8zkiqn"; depends=[]; }; + REAT = derive2 { name="REAT"; version="1.3.1"; sha256="076afs9zlskcb1c4sva7pmflzjzwqgb4315y0xnzcd3n5a9riz9s"; depends=[]; }; REBayes = derive2 { name="REBayes"; version="0.73"; sha256="0fv9ij71r36s6qsd0jrzcdirskvmr1bmxp1gbfvy77qm4dzxg00g"; depends=[Matrix reliaR Rmosek]; }; RECA = derive2 { name="RECA"; version="1.3"; sha256="1v9ff2inxwpq91pjl6g9bpl9nmlyryp030g6abydikkhkcq3n74b"; depends=[]; }; REDCapR = derive2 { name="REDCapR"; version="0.9.7"; sha256="0b2dbmmjd4bmr48inv1gwc9353p4rhf8891mb5rs4cdqsl13dic4"; depends=[data_table dplyr httr readr]; }; @@ -2331,10 +2395,10 @@ in with self; { RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; - REndo = derive2 { name="REndo"; version="1.1"; sha256="1n168xxjxj9353chdgsj88as0dj7ylm207xk75rbfzv7bdi7rlj9"; depends=[AER corpcor e1071 gmm lme4 lmtest Matrix mvtnorm optimx plyr sandwich]; }; + REndo = derive2 { name="REndo"; version="1.2"; sha256="0ghr2iww4fiwah2aalk3fbn90wgx2r5mdkvn37kpbg2q9prvcmwd"; depends=[AER corpcor e1071 gmm lme4 lmtest Matrix mvtnorm optimx plyr sandwich]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="1.6"; sha256="1hl2crg7jl266zac41xvx151h7kl52346wnlvd8hba64s4s4apay"; depends=[RColorBrewer]; }; - RFOC = derive2 { name="RFOC"; version="3.3-3"; sha256="101d7nf4zjni5kdk54w3afdaqnjzl7y90zygybkqpd0vi82q602b"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; + RFOC = derive2 { name="RFOC"; version="3.4-3"; sha256="04nm672pfrlqywhdpw0yrylwk3gqjfhxfdghf6af27ry6m3rjpcd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; RFc = derive2 { name="RFc"; version="0.1-2"; sha256="0zqnx9hbwp6j4y4r6mndgm95px07if93mpdmp3ls5kh4pnj2n6ff"; depends=[httr jsonlite sp]; }; RFgroove = derive2 { name="RFgroove"; version="1.1"; sha256="1ank7jvmn83w0xzylf7i0fjb60mbrzzydspksfzcy16rkl6f5dvb"; depends=[fda randomForest wmtsa]; }; RFinanceYJ = derive2 { name="RFinanceYJ"; version="0.3.1"; sha256="0qhmzsch7c2p0zckjkspsajzh8m10cf75ixjlgd0nj8rm41fngm3"; depends=[XML xts]; }; @@ -2344,7 +2408,7 @@ in with self; { RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; - RGBM = derive2 { name="RGBM"; version="1.0-4"; sha256="0z4qkwmkwf3r9lpfk5dgrphzb493wqrl7mrh58hyiz09dsy224h1"; depends=[doParallel foreach plyr]; }; + RGBM = derive2 { name="RGBM"; version="1.0-6"; sha256="03ax6l6qn8z31185dzhs6rcapbjnirp4nsc0mcf6qndhrqi4fxd6"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1"; sha256="1xpni9aj37zhpjr6k6gc82dihmzjdxjqy5dyz7lcvscgbwvbw0vl"; depends=[MASS]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; @@ -2360,17 +2424,17 @@ in with self; { RHRV = derive2 { name="RHRV"; version="4.2.3"; sha256="09rcf9da04195myh4mwva3hqcd483k0wwcn84jgbkj8a5z1zxqc6"; depends=[lomb nonlinearTseries tkrplot waveslim]; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; }; RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; + RIA = derive2 { name="RIA"; version="1.0.0"; sha256="0dwrp0w612i79ybxzffb7m34jgrcz8jzz2q7v6c34wayjm7j9kpc"; depends=[oro_dicom]; }; RIFS = derive2 { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; }; RISmed = derive2 { name="RISmed"; version="2.1.6"; sha256="0gwdx2xg3n4n82cvhj61yvdlmd35ag85dglwfcwhbplk7zh4cjps"; depends=[]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.1"; sha256="0a4sa60klbpl31qxxvjjbksdhvs3vwm9na1v7014v93fzxy6bjas"; depends=[spatstat]; }; RImagePalette = derive2 { name="RImagePalette"; version="0.1.1"; sha256="054w8xzsn330qg7piq6ajhji9na2swkkdis2567cy3q099npfl5v"; depends=[ggplot2]; }; RImpala = derive2 { name="RImpala"; version="0.1.6"; sha256="03f4cq4bcrydpy78ypir7smj7abrcfynz0zzlgwgc60vh7vl79lz"; depends=[rJava]; }; RInSp = derive2 { name="RInSp"; version="1.2"; sha256="0zg46qw44wx17ydcz592gl4k9qq08dycmsshxxqkjf92r3g3l6wm"; depends=[]; }; - RInno = derive2 { name="RInno"; version="0.0.1"; sha256="15rbd757am55kr1jkm1vh3ida5h4wbfcj0brj6ddjbpfivybg8wr"; depends=[curl httr jsonlite stringr]; }; RInside = derive2 { name="RInside"; version="0.2.13"; sha256="0cfhljdai9kkw5m01mjaya0s02g4g1cy1g4i0qpjkhgqyihsh7dy"; depends=[Rcpp]; }; RItools = derive2 { name="RItools"; version="0.1-15"; sha256="0f7g0w8bnbxryll48rnn7blgskgcdqqx9xv4fqmwcbkbasjz37va"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-5"; sha256="0cdqil9g4w5mfpwq85pdq4vpd662nmw4hr7qkq6510gk4l375ab2"; depends=[DBI rJava]; }; - RJSDMX = derive2 { name="RJSDMX"; version="1.6-2"; sha256="0015r71fh2ynwvq4lzdq1h59kvsr04h82anznwz5ixrc3vz3abzj"; depends=[rJava zoo]; }; + RJSDMX = derive2 { name="RJSDMX"; version="1.7"; sha256="13qd1ynxyyxsz11aiiqv47wlbygs5z3vsyw53fbcrcq4r34y4zx4"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; }; RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="0.1.1"; sha256="1630f8nmpid5pax8gqxych8bqf8a1avgrk7yqisk3lf1yx3h68rq"; depends=[ggplot2 shiny stringr xlsx]; }; @@ -2381,8 +2445,9 @@ in with self; { RKEELjars = derive2 { name="RKEELjars"; version="1.0.15"; sha256="06wc4x6lhk9akaghqi5bfkfs3yxg29lbga074a5nwadiz2fbnmkv"; depends=[downloader]; }; RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-3"; sha256="1r0xqay3jfg435dh9fqc6yy73wjffp658da194rx63vpfhshgz8w"; depends=[lme4 mgcv nlme Rcpp]; }; + RLT = derive2 { name="RLT"; version="3.1.0"; sha256="1aaavv6krp75wz0jp2xrm15ymq5f6sdaiz90c9ayy5q1kc7d82dk"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; - RLumModel = derive2 { name="RLumModel"; version="0.2.0"; sha256="164bg9smxllwwk93g3g08v3902p5bl0i278dyal71cxycayzc8y1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; + RLumModel = derive2 { name="RLumModel"; version="0.2.1"; sha256="1v2a2rrk9x0s3f62jg1v919ilia4r8h3n732rid3hbpmpky1iha0"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; RLumShiny = derive2 { name="RLumShiny"; version="0.1.1"; sha256="0wrn1lmwzigaq1w3a04mrz6ikgw2whr36718ckixphm5kcqlcnjr"; depends=[googleVis Luminescence shiny]; }; RM_weights = derive2 { name="RM.weights"; version="1.0"; sha256="0757p4174j913k8xh90zg6fpxh25b9415zap1i7ym9ab78kn0k3i"; depends=[Hmisc psychotools]; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; @@ -2399,18 +2464,20 @@ in with self; { RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; }; RMixpanel = derive2 { name="RMixpanel"; version="0.6-2"; sha256="09z00ryyk3jx1s7p2d1rzvg84qhybv58d1n3cvjcmj07bv1h2dj1"; depends=[jsonlite RCurl uuid]; }; RMongo = derive2 { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; }; - RMySQL = derive2 { name="RMySQL"; version="0.10.9"; sha256="0hpxjvr6yh2093ci7dwrww8wv9zhclfjk3wbx86jxvn87ms9qa21"; depends=[DBI]; }; + RMySQL = derive2 { name="RMySQL"; version="0.10.11"; sha256="127a0f7hp0msiqqdjfpk3pz862rb4agrd71bdic2idwbs0w5wh6s"; depends=[DBI]; }; + RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.0"; sha256="0qv90hczj1f2mqfzwv3fkmjhhfr8vqvdv30fpq0wgjpc799pv214"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; RNCEP = derive2 { name="RNCEP"; version="1.0.8"; sha256="0nkx33997c5rgc3ch5a2bb6rrw5xw1y71rliygw5k1ldi335rsm7"; depends=[abind fields fossil maps RColorBrewer sp tgp]; }; RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; }; RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; + RNRCS = derive2 { name="RNRCS"; version="0.1.1"; sha256="1dmkvb63wacwnjl51si1zyx26z1p4jkrdrr7pgxp2zh3lp8gsa96"; depends=[magrittr rvest xml2]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; RNeXML = derive2 { name="RNeXML"; version="2.0.7"; sha256="1q6ifqkypdj4hmm0f4mhwq8pidg4ba52c7k68527dk9rsrmiyjr6"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr taxize tidyr uuid XML]; }; RNeo4j = derive2 { name="RNeo4j"; version="1.6.4"; sha256="197ykvcfw1160ir6m568a4ksszyv5vlis2r0aygi155iz04j0bwm"; depends=[httr jsonlite rstudioapi]; }; RNetCDF = derive2 { name="RNetCDF"; version="1.8-2"; sha256="0pn45z1bj777nkfglvwwhpji8vz39sd51yszfa5g6rqxiw1a7y5d"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-3"; sha256="0aanp982c5xy4w4jsdcb9bmk1vyns055ad39hp206zaw3wj6vj3d"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="0.4.0"; sha256="1gj63rhzzrlxhwcwmn5jmq512zy08zhrbibh7w7xk0fzd6j0lkra"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="0.5.0"; sha256="1rshryjx5chnpf9a83nysjr5f9lam8fpdmggxndwa7m4s4zjvvi4"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.5.0"; sha256="10ksakp62d1qhl1r8lk0k9f6ng9wfli3lhyd14bxigv625429isa"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; }; @@ -2418,12 +2485,13 @@ in with self; { ROCS = derive2 { name="ROCS"; version="1.3"; sha256="11vdf8701ap6ya7c7kx9jhvg7qfc6vkij3jridna6f4xj384grki"; depends=[poibin rgl]; }; ROCt = derive2 { name="ROCt"; version="0.9.5"; sha256="0f7day0rv62ggm1nc7qkh45r6svr84mdk7xxpdf09pi4lbdx0rm6"; depends=[date relsurv survival timereg]; }; ROCwoGS = derive2 { name="ROCwoGS"; version="1.0"; sha256="029nramxwhzqim315g1vkg1zsszzkic28w6ahwg9n7bk9d08adzk"; depends=[]; }; - RODBC = derive2 { name="RODBC"; version="1.3-14"; sha256="12zjyhfclxj7k9lxhdlwxqh7ckmh916hh3ywmhzbvzvxvzymnkgd"; depends=[]; }; + RODBC = derive2 { name="RODBC"; version="1.3-15"; sha256="0m37b5ccdh4imbhmk7gj795fys2pcb9d0zx0xx2qanfrf54gk6kk"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; - RODBCext = derive2 { name="RODBCext"; version="0.2.7"; sha256="0lklafxhs9s5gwd0jd7jmz7inalxc6967vl4r2faq7d07zxmsyd8"; depends=[RODBC]; }; + RODBCext = derive2 { name="RODBCext"; version="0.3.0"; sha256="1w9n40ilwnxa4zcz57icyw2d7b37p8icvqaby1dn0w5vgskgrd12"; depends=[RODBC]; }; RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; ROI = derive2 { name="ROI"; version="0.2-1"; sha256="1g1qhrr62a74a8h73b75zxa5msbq5gv4cp1gmm0ihrjzzfzinvap"; depends=[registry slam]; }; ROI_models_netlib = derive2 { name="ROI.models.netlib"; version="1.0"; sha256="13ai7zkd00a03vyzfy1sm64cx8328xzwz5v8yw0shkdz5rchaq2d"; depends=[ROI]; }; + ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.1"; sha256="14i3a8kw4zq2rcmhm6ha53ihqbmql2ydh5syzp9cdrfm0yp6n97w"; depends=[clpAPI Matrix ROI slam]; }; ROI_plugin_cplex = derive2 { name="ROI.plugin.cplex"; version="0.2-1"; sha256="0ik4mmpd5x5233pdp88w8g605fg6lh4yvzlb9ndqxfnmv2nchgwl"; depends=[Rcplex ROI slam]; }; ROI_plugin_ecos = derive2 { name="ROI.plugin.ecos"; version="0.2-4"; sha256="0lzxz9zs68y2pkkkfa8vgi4jiswbbh128idddfz3hqak5j1gg3rh"; depends=[ECOSolveR Matrix ROI slam]; }; ROI_plugin_glpk = derive2 { name="ROI.plugin.glpk"; version="0.2-1"; sha256="01y66ir5s8spv4l8qz974wfkslxkqznzlc8padgrqm8vd9wli8k2"; depends=[Rglpk ROI]; }; @@ -2443,7 +2511,7 @@ in with self; { ROptRegTS = derive2 { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; }; ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; }; ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; }; - RPANDA = derive2 { name="RPANDA"; version="1.2"; sha256="0zp4zwh5gkywswrribyillgjvrp8hgbdn22c4iyl406wvbaiyy7y"; depends=[ape cluster corpcor deSolve fpc igraph phytools picante pspline pvclust TESS]; }; + RPANDA = derive2 { name="RPANDA"; version="1.3"; sha256="0rah5l5nfjs65zxgsgsy3q3vaph6qkr7p41x3arfhjsyma96p0zn"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEnsemble = derive2 { name="RPEnsemble"; version="0.3"; sha256="052c9cnsrjxbk2yxj08psy3nw0mq3mdr75fhnxpz64n4cqzxbr2q"; depends=[class distr MASS]; }; RPMG = derive2 { name="RPMG"; version="2.2-1"; sha256="03gqam7lp6ycrwm30gdwh2irqkcviwzk74ysyxff7b23ng4jkz1j"; depends=[]; }; @@ -2452,8 +2520,8 @@ in with self; { RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.3"; sha256="0qgvr671zir8d1q5rzdy0gkljsfr7bz1aj47xpkbbpkjr5hqgihj"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.4-1"; sha256="0ydz206ir797rv435if3653fnnyihgmhr5d0n4zhlrs1m1zy74k2"; depends=[DBI]; }; RPresto = derive2 { name="RPresto"; version="1.2.1"; sha256="1lka1p4wh1vl9bpg2q4yv72jcd6jjp09330mw68ph27jqhfzinmm"; depends=[DBI httr jsonlite RCurl stringi]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.8"; sha256="11z0ka5zlg6kglnm4ix4rfw2wakps6js11fzx762f78945g14r1s"; depends=[Rcpp RCurl]; }; - RPtests = derive2 { name="RPtests"; version="0.1.3"; sha256="0gprbd4m889kaklvc7ljbsl8m7l02pkfrdrzs84d92lgphg0wv9n"; depends=[glmnet randomForest Rcpp]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.9"; sha256="0jar93xxm9sa4a4mqc93868hmk2l0hpbh7x707ilmkzjq47fi81r"; depends=[Rcpp RCurl]; }; + RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; }; RQDA = derive2 { name="RQDA"; version="0.2-8"; sha256="103mb69x70z1i7z66b2if6zycr5iwcz1p3g8vvz0npmxncr4las9"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; }; @@ -2464,7 +2532,7 @@ in with self; { RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; - RRreg = derive2 { name="RRreg"; version="0.6.1"; sha256="1vf40xcg39hh9wz6hjfr2p10pzpbs4b6x5hmsf1njajcf6yfl09q"; depends=[doParallel foreach lme4]; }; + RRreg = derive2 { name="RRreg"; version="0.6.2"; sha256="0cm1r34hqdil3d27670q6a5iixh3lg8r4rzam6mq4zf2fqiwdpb9"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.9.10"; sha256="0m9gd1h9ghj6gfwixwy8hhc2625f9mi473zp55zdl5w2q10qk3ij"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; RSAGA = derive2 { name="RSAGA"; version="0.94-5"; sha256="0lbvy1p6wcxnn70149wcpmfy2ijk6g37ka452dxm0w0zpg0zga1w"; depends=[gstat plyr shapefiles]; }; @@ -2472,7 +2540,7 @@ in with self; { RSAgeo = derive2 { name="RSAgeo"; version="1.2"; sha256="1lgxcf5sd7aqk213s70mvi0kc4prm1w97m4wf3xjnvs7yc7mb5yz"; depends=[]; }; RSCABS = derive2 { name="RSCABS"; version="0.9.01"; sha256="1zx2272381i24hdpb1dks3l7szds9i0rl119ljxh9f61z4fbkrhp"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; }; RSDA = derive2 { name="RSDA"; version="1.3"; sha256="0f2f6bn11p43sv8zmvqpf5w1rdisf7b2dvllhiy3pg9f6r1mc85k"; depends=[abind FactoMineR ggplot2 glmnet princurve RJSONIO scales scatterplot3d sqldf XML]; }; - RSEIS = derive2 { name="RSEIS"; version="3.6-8"; sha256="1jhxd1aq85abll5vrdbbyz52ch8xyaxzqf5r2nzvnc6953hv6jnf"; depends=[RPMG Rwave]; }; + RSEIS = derive2 { name="RSEIS"; version="3.7-4"; sha256="0yz1lgq79chvcz70a82pyiy7s9z0af22pcnbkw629plzrxlpfppx"; depends=[RPMG Rwave]; }; RSGHB = derive2 { name="RSGHB"; version="1.1.2"; sha256="0b2v17p3a3sy8jc4vy0nq65sdkxyf0b8sf5f78yvdcn5knydah6c"; depends=[]; }; RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; @@ -2489,16 +2557,15 @@ in with self; { RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.1"; sha256="04ghck76jh7w6kgzdszkzjwj9fhyngq13mf9iybavxph5wcy7xgq"; depends=[binman caTools httr openssl wdman XML]; }; - RSentiment = derive2 { name="RSentiment"; version="2.1.1"; sha256="1p8bffsngk0s91y4f7prnlr7w9bxh460mf5ibi7v4md7jbbvhcsf"; depends=[NLP openNLP plyr stringr]; }; + RSentiment = derive2 { name="RSentiment"; version="2.1.2"; sha256="1vs32ir1ss41y7zpaa014ip2rnl6090l4aff7n4rzg6r36pys3kp"; depends=[NLP openNLP plyr stringr]; }; RSiena = derive2 { name="RSiena"; version="1.1-232"; sha256="0qp3bqq5p19bg47m37s2dw8m4q91hnkc2zxwhsgb076q0xvvv9xq"; depends=[Matrix]; }; - RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.10"; sha256="1wi2rv5wwibw8m0xd37f284b14irg2gnm31yz73c3wpic2sbf3wf"; depends=[base64enc digest httr jsonlite plyr stringr]; }; + RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.12"; sha256="0yxqna3vgjqpgbk6391dd3j5lvfa0n5xnjkq3i2i9i0pwzdr2knh"; depends=[base64enc digest httr jsonlite plyr stringr]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.1"; sha256="1xxs5q25v3i0qf829xl8n90n2fx1anfgfrzvwzff4dm252y7b2gw"; depends=[RCurl]; }; - RSocrata = derive2 { name="RSocrata"; version="1.7.1-24"; sha256="19myaccxxa11b92zi0ra53b6n5dx0af8ymxymqpmg7hlr3v6n82x"; depends=[httr jsonlite mime plyr]; }; + RSocrata = derive2 { name="RSocrata"; version="1.7.2-12"; sha256="0vbac4ah2bwnd2lwaslhkkg0wlxaw2gn5ijp5rkf2q1pl3pk88ls"; depends=[httr jsonlite mime plyr]; }; RSpectra = derive2 { name="RSpectra"; version="0.12-0"; sha256="0aa33mhzj03gznpza5l5qj94s45imfhrgx52bsa8rq00f93fgaf0"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; - RStars = derive2 { name="RStars"; version="1.0"; sha256="1siwqm8sp8wqbb56961drkwcnkv3w1xiy81hxy0zcr2z7rscv7mh"; depends=[RCurl RJSONIO]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.1.7"; sha256="122z9792bsh5afd1j9z7q8j1039hf86axw12w1r5cbrnkccnbgpj"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgeos sp XML]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.1.8"; sha256="1q2gahx8a9dgj8bxhrgl1k2ky5qba1rrrfyszx826mpnlzv72psd"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgeos sp XML]; }; RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; }; @@ -2506,32 +2573,33 @@ in with self; { RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTDE = derive2 { name="RTDE"; version="0.2-0"; sha256="1dj7dsj4256z9m70y2fpcgprxpqbgqxz0dqwn0jl80sj2325f66s"; depends=[]; }; - RTOMO = derive2 { name="RTOMO"; version="1.1-3"; sha256="10qkqdx2zj2m854z9s57ddf5jbzagac9mq5v6z5393c0s8bx10x8"; depends=[GEOmap RPMG RSEIS splancs]; }; + RTOMO = derive2 { name="RTOMO"; version="1.1-5"; sha256="0wnxmzad2q5cpnqmglqh92clsk2c8fngd3gzh8f91alpj6nz69jp"; depends=[GEOmap RPMG RSEIS splancs]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; + RTransProb = derive2 { name="RTransProb"; version="0.1.0"; sha256="0q5fyf176pzjjdpyc5wpakpfnp48ckcpcparf6n99js2xgxc725g"; depends=[chron e1071 expm matrixStats nnet pracma zoo]; }; RTriangle = derive2 { name="RTriangle"; version="1.6-0.8"; sha256="0mngwi7ybcg6lsk3f7faljwnzsfvyxln4jd2s2hiirr303ml4wzg"; depends=[]; }; RUnit = derive2 { name="RUnit"; version="0.4.31"; sha256="1jqr871jkll2xmk7wk5hv1z3a36hyn2ibgivw7bwk4b346940xlx"; depends=[]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-63"; sha256="0ckpwblflvz48745rp46sx14lvkqpb3csrpapk22ihryr9zn17mh"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-64"; sha256="1rsgf4aynvsah31xnxvjm3z4fcjg4sfa0k9ilszvn92l6jgx5k2g"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVPedigree = derive2 { name="RVPedigree"; version="0.0.3"; sha256="0v47bcdlcd0ydw4vffy1g9lj1azvyqwz4400nmlqshf9vqyhf9qq"; depends=[CompQuadForm doParallel foreach kinship2 ks Matrix snpStats]; }; RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.4"; sha256="0g7ckda8a278zg5vpfgajpa17r4hknf5akn556afyhmigj8bdax1"; depends=[]; }; - RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.8"; sha256="013mh8ghxccrhdcrcdfqll2jgf3z5zw7fsn0083bn3nkr19xbabz"; depends=[Rcpp]; }; + RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.9"; sha256="1xvjl2mfknrb3jrvxxdza4l21sh76n6w6r12makvjkr9q0nal408"; depends=[Rcpp]; }; RVsharing = derive2 { name="RVsharing"; version="1.7.0"; sha256="1z1jwj6dzyib8sxpz4p4wpiizfhxz6sp62nnig779rhnv7wfkqqf"; depends=[kinship2]; }; RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; - RWeka = derive2 { name="RWeka"; version="0.4-31"; sha256="0g801r5whb9iw6lxkjv89w042qb3iig8qw7bpwxjnlc2i8didzy4"; depends=[rJava RWekajars]; }; - RWekajars = derive2 { name="RWekajars"; version="3.9.1-1"; sha256="0kr9amnldnaz5vhmy0qkr3a0393wzqcl5x55qc8yqxq6g1ypzg5v"; depends=[rJava]; }; + RWeka = derive2 { name="RWeka"; version="0.4-33"; sha256="1y05rl19q85slq20awm7zivscgbkn7rfghjxgcwndhk8fab75kcg"; depends=[rJava RWekajars]; }; + RWekajars = derive2 { name="RWekajars"; version="3.9.1-3"; sha256="1jcp53qvj3wfaii8j18yvr4kx32hckqs2w6bzzmhx0py40zz1d01"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-1"; sha256="0w12xvc18l002m8q6ad3laa667xzqjbcfqf0vvcmicgw2j3bbq6h"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.2"; sha256="1bzdj55v7g2vlffpdsxpl8gv4k1xxd3xl7h1whvq6q5x76lprw0g"; depends=[data_table jsonlite marked]; }; - RXKCD = derive2 { name="RXKCD"; version="1.7-7"; sha256="13g5nylxh6ms57k2bhz3isfwcbxr4z0swcqja8inky25bid7jqgk"; depends=[jpeg png RJSONIO]; }; + RXKCD = derive2 { name="RXKCD"; version="1.8-2"; sha256="081zrx293z4009p6fj2za0mkf04nikxmg3i45l667qvy7nmajqlc"; depends=[jpeg png RJSONIO]; }; RXMCDA = derive2 { name="RXMCDA"; version="1.5.5"; sha256="1ci73q8xf3xxqw8b7sk83v5vz2cqgcb4lkx7qi3hd1ff4xkz1fpa"; depends=[kappalab XML]; }; RXshrink = derive2 { name="RXshrink"; version="1.0-8"; sha256="0l4aknr1vxrkxqsgkjcffs0731jskyzvl055a01vd8h4a0826n5s"; depends=[lars]; }; RYandexTranslate = derive2 { name="RYandexTranslate"; version="1.0"; sha256="0qrv5mnnkn5fs7vx6i74z46s0qj9f98km5bizgj00832qyrq8q1s"; depends=[httr jsonlite RCurl]; }; RYoudaoTranslate = derive2 { name="RYoudaoTranslate"; version="1.0"; sha256="1i3iyqh97vpn02bm66kkmw52ni29js30v18n2aw8pvr88jpdgxm4"; depends=[RCurl rjson]; }; RZabbix = derive2 { name="RZabbix"; version="0.1.0"; sha256="0c5803chpzvp7dk9pjfx5f0nqynb76ywakz04ah2nw07ypvcyjyr"; depends=[httr jsonlite]; }; - RadOnc = derive2 { name="RadOnc"; version="1.1.2"; sha256="03pcv5wh1v12k6wys4n1j2gz1x0pzrxnjj7lbimcy7plv183psfi"; depends=[geometry oro_dicom ptinpoly rgl]; }; + RadOnc = derive2 { name="RadOnc"; version="1.1.3"; sha256="15ww09dpyljph2pq0d2d0pbr3dzwkwsn0zv8f3w8jhhgc3s8hqkz"; depends=[geometry oro_dicom ptinpoly rgl]; }; RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; }; RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; }; Radviz = derive2 { name="Radviz"; version="0.7.0"; sha256="0x1b3s3i3f775m7ragvzpdswljry8adbkjb6aq35aqasnkvvnysq"; depends=[gridBase hexbin KernSmooth MASS]; }; @@ -2539,16 +2607,17 @@ in with self; { Rambo = derive2 { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; }; RandPro = derive2 { name="RandPro"; version="0.1.0"; sha256="10zb8xhcb54jscfnpz734c7kh43pgi3bb61yasi6rvlqd83g1zdn"; depends=[]; }; RandVar = derive2 { name="RandVar"; version="1.0"; sha256="0iqq1hh1gl2kzgyfxp6bs31pmj5ic4y6wqwm7iaj20gk2wv923jg"; depends=[distr distrEx startupmsg]; }; - RandomFields = derive2 { name="RandomFields"; version="3.1.36"; sha256="04pj5zl6az69xa9nr044l1rqkl4hzxdzvw99yvn0qppiqkn8grc2"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.15"; sha256="0cr8xngvc5984q4h444x05lqxqh6ml8pcgg3pigyg77jafapmy6l"; depends=[]; }; + RandomFields = derive2 { name="RandomFields"; version="3.1.50"; sha256="0j7852wvclglp820y2x5r19gsr6ciygbbpl5qvwj1khnlz1hfsid"; depends=[RandomFieldsUtils sp]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.25"; sha256="0nxk7jhr61l9h76hf96f7ypakl4wip144c0gzr6rqsja6m75rjz3"; depends=[]; }; RankAggreg = derive2 { name="RankAggreg"; version="0.5"; sha256="1c5ckk2pfkdxs3l24wgai2xg817wv218fzp7w1r3rcshxf0dcz2i"; depends=[gtools]; }; RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; }; + RankingProject = derive2 { name="RankingProject"; version="0.1.1"; sha256="1n1282pym7q2b1bh18wlkmk9f0simzq149h7hacc23vyqzgkjs84"; depends=[]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1"; sha256="0m6r11ksryzcfcm265wr9fhwb867j9ppfhalvvygzig5j85sg92k"; depends=[PBSmapping RANN RgoogleMaps sp]; }; Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; RateDistortion = derive2 { name="RateDistortion"; version="1.01"; sha256="1micjlbir1v5ar51g1x7bgkqw9m8217qi82ii6ysgjkhwdvpm075"; depends=[]; }; - RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.0"; sha256="0ch368wvvknm38wvjhk2ia0ihk8hikpssph9n0q4p2gzq9m4vj57"; depends=[ggplot2 pROC]; }; + RatingScaleReduction = derive2 { name="RatingScaleReduction"; version="1.1"; sha256="0h9wlx87wbavx7hs3ryx88iykk0lj3lfsvrdi4w9h31y3x6cwagy"; depends=[ggplot2 pROC]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; RbioRXN = derive2 { name="RbioRXN"; version="1.5.1"; sha256="0lc43wm986y3xbdh1xihn7w583cql9kvj6rb018pn06ghz153i0d"; depends=[ChemmineR data_table fmcsR gdata KEGGREST plyr RCurl stringr]; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; @@ -2558,6 +2627,7 @@ in with self; { RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; }; Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; + RchivalTag = derive2 { name="RchivalTag"; version="0.0.3"; sha256="06n3zvgq6baahm3idfm64byyrv2k70w21yd0yrvfnf731dfhy94g"; depends=[akima mapdata maps maptools ncdf4 oceanmap PBSmapping plyr raster rgeos sp]; }; Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; }; Rclusterpp = derive2 { name="Rclusterpp"; version="0.2.3"; sha256="02s5gmmmd0l98wd1y884pjl3h289dyd9p9s7dh7yl2zaslqs2094"; depends=[Rcpp RcppEigen]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.3-2"; sha256="07p22b6kbx2md6h911jzgiin2rds76aizn9d7nd6l4lxp8a76c09"; depends=[abind car RcmdrMisc relimp tcltk2]; }; @@ -2606,11 +2676,11 @@ in with self; { Rcoclust = derive2 { name="Rcoclust"; version="0.1.1"; sha256="1f4li4pr1cl0nnq21rbk1qksn44zl2p65w9zs6k9k4mb050cyjqy"; depends=[]; }; Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; }; Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; }; - Rcpp = derive2 { name="Rcpp"; version="0.12.9"; sha256="0pndpgmfmvkssvn9m3i4nbq2n6hxz3i4i8y2nlycn2gdipr0vggh"; depends=[]; }; + Rcpp = derive2 { name="Rcpp"; version="0.12.10"; sha256="108p485agxwgmnl9p54vsyy94w96lcimlk08v71ddm77gfl13y2f"; depends=[]; }; Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; }; RcppAPT = derive2 { name="RcppAPT"; version="0.0.3"; sha256="0q1iwhf1rafzr6d7pjbxs0ii0anbfrzrl1kpz1ka5yvjw39s3kr8"; depends=[Rcpp]; }; RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.8"; sha256="14hw9nrqwcqx2xwam03wfxk07qg648gp0cnk76c4knpr6pmad9sx"; depends=[Rcpp]; }; - RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.7.700.0.0"; sha256="03cvl2xgmvh4sylw7ff7s020y7k2wzyj34l0zngm09qs44pa9q0m"; depends=[Rcpp]; }; + RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.7.800.2.0"; sha256="025lh504nw7ir1f2xsqnvfkq9rg0rb2xzfn3a2s0b2a9snqdzzwr"; depends=[Rcpp]; }; RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; }; RcppBlaze = derive2 { name="RcppBlaze"; version="0.1.1"; sha256="0r6mzsm2gq77i8cylcvgg7hn0399d3v11wlf89v559vslkv2b2m0"; depends=[BH Matrix Rcpp]; }; RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.1"; sha256="0895cc1rzppniakvrl1r6k4c3vm45ppihv3vwvf5x062ag34yqsd"; depends=[Rcpp]; }; @@ -2619,10 +2689,10 @@ in with self; { RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.1"; sha256="0shs12y3gj5p7gharjik48dqk0fy4k2jx7h22ppvgbs8z85qjrb8"; depends=[Rcpp RcppClassic]; }; RcppDE = derive2 { name="RcppDE"; version="0.1.5"; sha256="1zgz8h7d7jjml9hm164y9wrsgcb1fymp3ipxp235fmk44lbrwpcw"; depends=[Rcpp RcppArmadillo]; }; RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.2.9.0"; sha256="0fy9kr03160f1ywzff3p380s8a59jz7d2d0rggb14g2y0slzpbr5"; depends=[Matrix Rcpp]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.2.9.1"; sha256="1ih940yjbc530cmpl6kx1jic7pz2ps1w5vrvy32qizh6m5s3lk7x"; depends=[Matrix Rcpp]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; - RcppGSL = derive2 { name="RcppGSL"; version="0.3.1"; sha256="00jqn1ix0qpv1zn8ciz161pq6gxq5had1afm194k6k7hahph3bip"; depends=[Rcpp]; }; + RcppGSL = derive2 { name="RcppGSL"; version="0.3.2"; sha256="0fg13va124shkyy6g1fwblld1r4vdgxscab64kszyjivkjsb2lw1"; depends=[Rcpp]; }; RcppGetconf = derive2 { name="RcppGetconf"; version="0.0.2"; sha256="0z5sg2jlr465196ws2pqi7j7hfmd7j8xlqqj6841m635cg4q48ba"; depends=[Rcpp]; }; RcppHMM = derive2 { name="RcppHMM"; version="1.0.1"; sha256="10ssg2558s6cw6f6adzpw76qcsizbllc70y1s8vbhb2xkc26d1cn"; depends=[Rcpp]; }; RcppHoney = derive2 { name="RcppHoney"; version="0.1.6"; sha256="1llbs6x4qcvgnlmnd391s1j9lqvybnnq3d4gjwyyc8vy2i5jr28c"; depends=[Rcpp]; }; @@ -2631,16 +2701,18 @@ in with self; { RcppOctave = derive2 { name="RcppOctave"; version="0.18.1"; sha256="1b2mwnsx799a86hdpkqy6l1m048g8hqz57l70siybkxnlaib3z0f"; depends=[digest pkgmaker Rcpp stringr]; }; RcppParallel = derive2 { name="RcppParallel"; version="4.3.20"; sha256="1hc325hj214s61694iy4j3ly5zkya25h92hki29n3562qiirpb0g"; depends=[BH]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.3"; sha256="0796g11w7iv3ix1wfm3fh09qq7jki4r4cp1mjagq77igri3xrr9x"; depends=[Rcpp]; }; + RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.1"; sha256="0c4kb6jnhsnha6139nj9kifg4yb5glj7azs0xwch5052bnl7xhyp"; depends=[BH Rcpp]; }; RcppRedis = derive2 { name="RcppRedis"; version="0.1.7"; sha256="0x456zrd7qv8iclhdbgl4bwa1bvpirlqx6ywsincj6y0446f13rz"; depends=[BH RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.2.2"; sha256="19xzvxym8zbighndygkq4imfwc0abh4hqyq3qrr8aakyd096iisi"; depends=[Rcpp]; }; - RcppSMC = derive2 { name="RcppSMC"; version="0.1.4"; sha256="1gcqffb6rkw029cpzv7bzsxaq0a5b032zjvriw6yjzyrpi944ip7"; depends=[Rcpp]; }; - RcppShark = derive2 { name="RcppShark"; version="3.1.0"; sha256="0fyf7ffv5hhxnandrrx9xg72zwrw8cp73bwmb48iy5514gdwg77a"; depends=[BH checkmate Rcpp]; }; + RcppSMC = derive2 { name="RcppSMC"; version="0.1.5"; sha256="0vzibl1ck0cxl9nzx2829ikxvp2bcndq7h0agzr53i089168rr8s"; depends=[Rcpp]; }; + RcppShark = derive2 { name="RcppShark"; version="3.1.1"; sha256="0dy6zksxcsbzjyz0f147rk2amwjsrjdcyl6jn767pw9ij9vdzh6r"; depends=[BH checkmate Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; }; - RcppTOML = derive2 { name="RcppTOML"; version="0.1.1"; sha256="1kmhmi13666zv3zsy3wlmh13picvicjc1nrlv9dqjzwcwahpih1l"; depends=[Rcpp]; }; + RcppTOML = derive2 { name="RcppTOML"; version="0.1.2"; sha256="05fm396frx5zlrxy7kddnwj0wv29jk33x8s01bqfjc1yhaxv17vx"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.3"; sha256="0s82haf96krr356lcf978f229np6w0aihm2qxcnlm0w3i02gzh3x"; depends=[Rcpp RcppGSL]; }; Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.1"; sha256="1rvqb3lsn5br9cmj63c9ql4dkp0igdrag65sxgajpsyqkpyg17qn"; depends=[formatR roxygen2]; }; + Rcssplot = derive2 { name="Rcssplot"; version="0.2.0.0"; sha256="0pv1yzpsc68bahfxh5h79xmh798a22nk6i88gj1s81sp7l5fbqlm"; depends=[]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.2"; sha256="1hkqy97mh68yzkh4bawjrgf1rlhkh3jz2ky84rg3wgz1mkvrrsx2"; depends=[formatR roxygen2]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; }; Rdpack = derive2 { name="Rdpack"; version="0.4-20"; sha256="1b1vikh8py4lvf6w90919y8f5aq9xyhv2pprfyzfx0671k99cz6z"; depends=[bibtex gbRd]; }; @@ -2648,9 +2720,9 @@ in with self; { Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; - ReIns = derive2 { name="ReIns"; version="1.0.2"; sha256="05ipf3gvgfv3q58mdh3g9zg7z7wm0gvigb839y1nprb98wvrqj2f"; depends=[doParallel foreach Rcpp survival]; }; + ReIns = derive2 { name="ReIns"; version="1.0.3"; sha256="16cgcacdnvfg6cbhfjh3g3dj22bdbbn7yllj1afq04lbjbplaydw"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.2"; sha256="1yc0k3wgg4yb6cqmjkyl25sfkbfcfxi5ria106w5jyx7dr5lfvdi"; depends=[deSolve rootSolve shape]; }; - RealVAMS = derive2 { name="RealVAMS"; version="0.3-2"; sha256="0rmqy3csgfvq5c3sawvd3v37is8v5nnnrhifschqfsycmadf1gdp"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; + RealVAMS = derive2 { name="RealVAMS"; version="0.3-3"; sha256="1isjk6mzhlhmvz8sv5wlh3w6s53yk3f41xxji4j3hwbaw5q9a73m"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; }; Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; }; RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-10"; sha256="09xp0ad7v2bsg1r7gf3awdqcpds0v3ygsbnkm8ysy8w14sbrrydf"; depends=[ada data_table DBI e1071 evd ff ffbase ipred nnet rpart RSQLite xtable]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; @@ -2660,6 +2732,7 @@ in with self; { RefManageR = derive2 { name="RefManageR"; version="0.13.1"; sha256="1yw3fbiis1gl7ih66b4vjr299xy3w164irmmdfsqr79n9h3p5kv7"; depends=[bibtex httr lubridate plyr RCurl RJSONIO stringr XML]; }; RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.2"; sha256="1g23paq42xiiqavikbrflwmr8ikls9z97v1xpgg16pb88svdyayc"; depends=[]; }; + ReinforcementLearning = derive2 { name="ReinforcementLearning"; version="1.0.0"; sha256="171zd62zsnahnx9chb51diqw739i4rd4jv80q1mzhxzszzp286jj"; depends=[data_table ggplot2 hash]; }; RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Relatedness = derive2 { name="Relatedness"; version="1.4"; sha256="0ahd053sbqwjq93l8m2gq7fqqc9vvgnndz4j8pmgswwcah8h77c8"; depends=[]; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; }; @@ -2681,6 +2754,7 @@ in with self; { Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="1.2"; sha256="1q359574fspwxy1lmlzfqk0cg3qih8jzh3rk74qr22jw0sp7bcyw"; depends=[]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; + Rgb = derive2 { name="Rgb"; version="1.5.0"; sha256="03m74ri3lg5q8215wlwbv08l90vhjxq3al36vpkpkys9fc1c9sbz"; depends=[]; }; Rgbp = derive2 { name="Rgbp"; version="1.1.1"; sha256="14xban9d182fhss9ppr13scih7hrbjd9s231avi4gkg79cz87s0s"; depends=[mnormt sn]; }; Rglpk = derive2 { name="Rglpk"; version="0.6-2"; sha256="1dzcc9dwdvrs1g9mgk5z9qdxn3iq04s91ak881z3wrqvxhp42cgr"; depends=[slam]; }; Rgnuplot = derive2 { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; }; @@ -2696,7 +2770,8 @@ in with self; { Rjpstatdb = derive2 { name="Rjpstatdb"; version="0.1"; sha256="0iwgsp3mblp7bsx88wfpqn09y1xrkingfkm3z9jsi2bwrnrjc2iv"; depends=[RCurl XML]; }; Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.1.133"; sha256="1lvik88zfxlipr24qdj04faknfjsaiv6q75zllgz3v6rjbxvh4jz"; depends=[fasttime Rcpp RCurl rjson]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.1.134"; sha256="1jdm3rpln4mjgs1hhl8074mnnfj376sfk7p0cz1pfd9ii0fidc88"; depends=[Rcpp RCurl rjson]; }; + Rlda = derive2 { name="Rlda"; version="0.1.0"; sha256="1gv3zfw1cmd44d1d4p6d3jp0l860jncblivq77w4m1papa24hhz0"; depends=[gtools Rcpp RcppArmadillo RcppProgress]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.3.7"; sha256="0k2snw8a6h4dvbpl97fklvvbbqma4g9r0ksvh5ndyk4vqwyxy1na"; depends=[Rcpp]; }; Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; }; Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; }; @@ -2733,24 +2808,23 @@ in with self; { RpeakChrom = derive2 { name="RpeakChrom"; version="0.1.0"; sha256="0l7lgscj2lsbm2k1lmzwc15k533hkqz5yhyzz6m2ngg6qf8fhsy3"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; }; - Rpoppler = derive2 { name="Rpoppler"; version="0.0-3"; sha256="055ldafgf0lp3g2kjlpbhsq03fwwia6a6fwk7d4w5znihah9ibbg"; depends=[]; }; + Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; }; Rramas = derive2 { name="Rramas"; version="0.1-4"; sha256="191rm2ylvf3ffc9i4wpjvfbsinmw7s1m0wcq24j4qs4fxg8qqzyq"; depends=[diagram]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-14"; sha256="18ry07pi9iwskbxcimvp91fgpvrlaf44z0hp7k90dnyaa8qpbwjx"; depends=[]; }; - Rsampletrees = derive2 { name="Rsampletrees"; version="0.1"; sha256="02wh99nxlhyrivr655825nqcl3w0mvppnmvc9yrkdbkjw0l1zsjd"; depends=[ape haplo_stats]; }; + Rsampletrees = derive2 { name="Rsampletrees"; version="1.0"; sha256="1qq7z7wxb933wvy62zz2vxmpiz0441v01ravhkrmz70ppq5jnlpn"; depends=[ape haplo_stats Rcpp]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; }; - RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.2"; sha256="0d5z5dffi2prz0r31x08c8gw83448bhkma5mzcmrdlg6kx5y7dp8"; depends=[fields jpeg RANN]; }; + RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.2"; sha256="0b063b9jwnn7mansm5mbgqcfk8p596inf7l3r6fafvsjw5844b6l"; depends=[class kohonen Rcpp]; }; Rssa = derive2 { name="Rssa"; version="0.14"; sha256="0r51jw7fl0nxmly05dj85chw804vf8gmrkfs6yi59zh7fq7jsis6"; depends=[forecast lattice svd]; }; - Rsundials = derive2 { name="Rsundials"; version="1.6"; sha256="0vrvxsznbclgls4jljc59lyli6cw9k1a3wapfrs6xbkqi8865iif"; depends=[]; }; Rsurrogate = derive2 { name="Rsurrogate"; version="2.0"; sha256="1pjyhlxqi8mcbywa7qa1vxgxr5jca0nc9vm1bx53vr231wgnb7gf"; depends=[survival]; }; Rsymphony = derive2 { name="Rsymphony"; version="0.1-26"; sha256="0v51sjhggvl8i3ysslqcc4x84874nagxq2v68izs4hpvcpzn7268"; depends=[]; }; Rtauchen = derive2 { name="Rtauchen"; version="1.0"; sha256="09282k6qsjxgm26682npfjymmbx5g8flcc44awmkjl2k4fa1q9ha"; depends=[]; }; Rtextrankr = derive2 { name="Rtextrankr"; version="1.0.0"; sha256="16dby3xsfcjyp35xdflmgnh7zkqygfbffvj4jqa565vj9ksnq5ir"; depends=[igraph KoNLP sets stringi]; }; Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; - Rtsne = derive2 { name="Rtsne"; version="0.11"; sha256="0zi4nxgpiv1gpdmcnqdhz5kymzp8m5xj02zpf290p1yyydl76bhy"; depends=[Rcpp]; }; + Rtsne = derive2 { name="Rtsne"; version="0.13"; sha256="17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.4"; sha256="19wcjgcv871vzclgskvb7xywnzvvi9v5k0qhwxwwi3qc9yx2kpaq"; depends=[]; }; Rtts = derive2 { name="Rtts"; version="0.3.3"; sha256="0jphdpnpbq0d48kzflilxlh6psk282hi1hz3rmnwnd0rx5iyg624"; depends=[RCurl]; }; RtutoR = derive2 { name="RtutoR"; version="0.3"; sha256="0knqwk44di24x8w2pf794hk2raq7gcpl6cd6s9m0sr73rxh9sf11"; depends=[dplyr DT ggplot2 ggthemes plotly rmarkdown shiny shinyBS shinydashboard shinyjs]; }; @@ -2759,12 +2833,13 @@ in with self; { Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; Runuran = derive2 { name="Runuran"; version="0.23.0"; sha256="1qkml3n0h1z59085spla0ry1wl42c1ljg9nh2sxv6mnhxygm6aq1"; depends=[]; }; RunuranGUI = derive2 { name="RunuranGUI"; version="0.1"; sha256="0wm91mzgd01qjinj94fr53m0gkxjvx7yjhmwbkrxsjn6mjklq72l"; depends=[cairoDevice gWidgets gWidgetsRGtk2 Runuran rvgtest]; }; - Rvcg = derive2 { name="Rvcg"; version="0.15"; sha256="0h0gl6s7xa96g91d0df08ssgr1hnxgc1pqrlirvjdknr7jpkq04k"; depends=[Rcpp RcppArmadillo RcppEigen]; }; + Rvcg = derive2 { name="Rvcg"; version="0.16"; sha256="0629fl4bq15mcb9kxiqsgllqgygxx0xn50849akx0rn72y7jp5v0"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2013-11.12"; sha256="1ljzydvizbbv0jv5lbfinypkixfy7zsvplisb866f8w45amd152a"; depends=[optextras]; }; - Rwave = derive2 { name="Rwave"; version="2.4"; sha256="1ynj6higx0j6iv033lx8h3i9hlg5b53nl2gv6fwjny4ygm8b1mjm"; depends=[]; }; + Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; + Rwave = derive2 { name="Rwave"; version="2.4-5"; sha256="1q80759382yig5gmjd83qafavhbbh7bbbgil8qha91xfs27m45br"; depends=[]; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; }; - RxODE = derive2 { name="RxODE"; version="0.5-5"; sha256="1rh25vjy8pnaavz9df6bcmk9b8d72hxm73n1hg3ha724cyxypzpa"; depends=[]; }; + RxODE = derive2 { name="RxODE"; version="0.5-6"; sha256="06y4cdkx93ldhdbs5iaiad7hzlbnsjnimmnmvcnfv4gbicxjq9c5"; depends=[]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.1"; sha256="17agz3kw7pj4mpl25y1n8l9lqfj63wn70rqpdkcpnx7j6s6933vx"; depends=[data_table fingerprint rcdk rJava]; }; Ryacas = derive2 { name="Ryacas"; version="0.3-1"; sha256="13qvd5gpdrjgzf6isk3529khd02852y3ajmpp5vl8vn9k1jxp86v"; depends=[Rcpp XML]; }; Rz = derive2 { name="Rz"; version="0.9-1"; sha256="1cpsmfxijrfx06ydpjzbaak7gkad4jjk1ph9453l9zly1cwzgspj"; depends=[foreign formatR ggplot2 memisc psych RGtk2]; }; @@ -2782,7 +2857,7 @@ in with self; { SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; SAPP = derive2 { name="SAPP"; version="1.0.7"; sha256="0rms9kq87dypdfs248m4393lgpfx37qah0n1s109pfnjh3k64pm3"; depends=[]; }; - SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.7"; sha256="0xs2zjr3r3a39szip53qkcja3n89vr1hq46a2zcwl6s5gdbb1vyj"; depends=[]; }; + SARP_moodle = derive2 { name="SARP.moodle"; version="0.3.8"; sha256="1hz5a2zjv8hrasjck981sqahq0l88b6ard1iwsfqznalva8zywbb"; depends=[]; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; @@ -2795,11 +2870,11 @@ in with self; { SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; SCGLR = derive2 { name="SCGLR"; version="2.0.3"; sha256="03v76nh6ng41hh4lm27r8ipf382sj98dyl9lh4fzl4y6ff1vwzzj"; depends=[expm Formula ggplot2 Matrix pROC scales]; }; SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; - SCMA = derive2 { name="SCMA"; version="1.1.1"; sha256="1jbx4fkixm31zdlfx65xxdzpf77dzpqazy1l6qyjz7q672s2vidd"; depends=[]; }; + SCMA = derive2 { name="SCMA"; version="1.2"; sha256="0z4f8p1d0ry35g5a13blc8w73vid7nwdn2w9d3i0nfb05fj7i5qf"; depends=[]; }; SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; }; - SCRSELECT = derive2 { name="SCRSELECT"; version="1.1-0"; sha256="1mf11xxzi6g0cs91l6a0b9dic3a737ckxwrrbxk3m2cz6ymy5k9r"; depends=[mvtnorm]; }; - SCRT = derive2 { name="SCRT"; version="1.1.1"; sha256="02sndf5r1y27pgkw4wd9bhz7jhzk3cv78hp3xl222phjznjf2lzi"; depends=[]; }; - SCVA = derive2 { name="SCVA"; version="1.1.1"; sha256="1n660pml288ia4x18kjbrcx0n1cnasdxhl6pymh1nzxm4ai2hinc"; depends=[]; }; + SCRSELECT = derive2 { name="SCRSELECT"; version="1.1-2"; sha256="18vdiijcj4k34k3yvcxj4gv3f15lhyazyf1z8iyic2yrj6xbhnq0"; depends=[mvtnorm]; }; + SCRT = derive2 { name="SCRT"; version="1.2"; sha256="0ihrvhpapyiyf31hqbj1yj4kwlbjnv3zqra4f57fm39jyr444jf3"; depends=[]; }; + SCVA = derive2 { name="SCVA"; version="1.2"; sha256="0kn0v85n4lxl631sa279cfrs6q28a3hw278dcmkqbjz3qqyna1dk"; depends=[]; }; SCperf = derive2 { name="SCperf"; version="1.0"; sha256="1v9l7d9lil2gy5bw6i7bzc24808m063xaw2spl005j0a9rh4ag41"; depends=[]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; @@ -2817,14 +2892,14 @@ in with self; { SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; }; - SGCS = derive2 { name="SGCS"; version="2.5"; sha256="1245xqv8im457zdgcny66jnzv8kyfi8ddic9zdk94sr6jkwx6x17"; depends=[spatstat]; }; + SGCS = derive2 { name="SGCS"; version="2.6"; sha256="09czgfc0mg64qcigp36kjaf52zlmrpz3m2d1dp42d9hhlciliqf5"; depends=[spatstat]; }; SGL = derive2 { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; }; SGP = derive2 { name="SGP"; version="1.6-0.0"; sha256="02q9kbafnlrwyzrf5xv4lj89ifhmx1gj03jvlrhb9a4g04084w1z"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats quantreg randomNames RSQLite sn toOrdinal]; }; - SGPdata = derive2 { name="SGPdata"; version="15.0-0.0"; sha256="1mqvrax1sndxbn8rp1hqnkhyfr9nlkz3bl7h2gr27ka3ddz1vv1h"; depends=[data_table]; }; + SGPdata = derive2 { name="SGPdata"; version="17.0-0.0"; sha256="1pjilyqwhgisz1iiy50l86dwc4dg3c8dzlpx7mm7n75049vzp2xq"; depends=[data_table]; }; SHELF = derive2 { name="SHELF"; version="1.2.3"; sha256="1d52a1yci9zq9zl2mkq9ji340jfa47w47br5gpapd84yk9d61llb"; depends=[ggExtra ggplot2 MASS shiny tidyr]; }; SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; }; SHLR = derive2 { name="SHLR"; version="1.0"; sha256="0anj2bfbax8kipn7cgjhr4ijjcipixm9lshafh19qbxag2li1891"; depends=[doParallel FactoMineR foreach geepack kinship2 MASS Matrix stringr]; }; - SIBER = derive2 { name="SIBER"; version="2.1.0"; sha256="0vny2iy5jyffz6fh6a6y4i270c9ndkj0ixh0322lfa45cc6f4m7q"; depends=[hdrcde mnormt rjags]; }; + SIBER = derive2 { name="SIBER"; version="2.1.2"; sha256="13ag1z15gw5y0l3r011sq3rpla3pmhamswvy3klnj0n0mpa0r4yc"; depends=[hdrcde mnormt rjags spatstat viridis]; }; SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; SIDES = derive2 { name="SIDES"; version="1.10"; sha256="13v4pdsaqah5v92fpc1lmsg5391igdys1l2frrw4432bvgm74rg9"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; }; @@ -2834,7 +2909,7 @@ in with self; { SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; SKAT = derive2 { name="SKAT"; version="1.2.1"; sha256="0i8samw6bwzbwcpdf12b932r46yy2fkqp4dn7a5kk50mzzfphib2"; depends=[]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; - SLDAssay = derive2 { name="SLDAssay"; version="1.5"; sha256="1klfbvzlddblz6wgp0gb2i2c1bdp44iyl0gi87v9sg7wb3kwilld"; depends=[]; }; + SLDAssay = derive2 { name="SLDAssay"; version="1.6"; sha256="0dzy66jlz0y7f0k4534jj4yfbrd1lyqaf6d3z3mqwl3zngyb2m1g"; depends=[]; }; SLHD = derive2 { name="SLHD"; version="2.1-1"; sha256="0y3ilxd0phmks8zkmpgw7p5zrkwq4k95h976cwk58pavvhfwj9kb"; depends=[]; }; SLOPE = derive2 { name="SLOPE"; version="0.1.3"; sha256="12naak08qjpn6l1ikqwf17h72zk4b5mppgxx7ks9wmnqy9ylhy3x"; depends=[Rcpp]; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; @@ -2844,6 +2919,7 @@ in with self; { SMIR = derive2 { name="SMIR"; version="0.02"; sha256="02q8m5m8lcfrpi78p3kajkps8wiir3jwyqc54j9vfx8aj6mk1v71"; depends=[]; }; SML = derive2 { name="SML"; version="0.1"; sha256="0pdj7321wy50v5l23hknlm30kp8cfgn072pbbifyp8qzmk0hyd8h"; depends=[glmnet lattice Matrix]; }; SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; + SMMA = derive2 { name="SMMA"; version="1.0.1"; sha256="0ld8jjh67iw5w5cmb2gb899269apjydgqjsnn5hq5lzqjilpzzl8"; depends=[Rcpp RcppArmadillo]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; }; SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; @@ -2853,7 +2929,7 @@ in with self; { SNPassoc = derive2 { name="SNPassoc"; version="1.9-2"; sha256="113byj8zbg6xyxb1qzm76sqfyk3fap0sd90691zzm1x2pbfnb3mh"; depends=[haplo_stats mvtnorm survival]; }; SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; SNPtools = derive2 { name="SNPtools"; version="1.1"; sha256="0l29kiqz4048x7amxx1qzkaw2xnd6lpdsdp5nq3rck9amx2hw64a"; depends=[Biostrings GenomicRanges IRanges Rsamtools]; }; - SNSequate = derive2 { name="SNSequate"; version="1.2.1"; sha256="0pkf12cmbk4w7q8vn4rfz2wnb0rirn1lnn71jd3g4573lvk3fhdi"; depends=[magic]; }; + SNSequate = derive2 { name="SNSequate"; version="1.3.0"; sha256="0j0cj6c3j1pqh67nxz3wrwr0cf4hj44zqh2k7c1jc5cbldixkhpn"; depends=[DPpackage emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; }; SOD = derive2 { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; }; @@ -2869,7 +2945,7 @@ in with self; { SPACECAP = derive2 { name="SPACECAP"; version="1.1.0"; sha256="11szdq7sqr8ldwz7apbf1dv5mh43rbyb7dkivms58s5623xrq3sm"; depends=[coda]; }; SPARQL = derive2 { name="SPARQL"; version="1.16"; sha256="0gak1q06yyhdmcxb2n3v0h9gr1vqd0viqji52wpw211qp6r6dcrc"; depends=[RCurl XML]; }; SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; }; - SPAtest = derive2 { name="SPAtest"; version="1.0.0"; sha256="07wc5mf49d65jizx3j4cjlcil758fzi6x688jji80spsapfq9gbn"; depends=[]; }; + SPAtest = derive2 { name="SPAtest"; version="1.1.0"; sha256="0dy63ha8d9pzqcf61inbp24nhbpb6pzhw08vsf134znirll0kgr4"; depends=[]; }; SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.3"; sha256="1yzls6i0v3c44lhdb9d2ydw6abphyjnrx2idxdcp0qqj87fw92l4"; depends=[]; }; @@ -2878,7 +2954,7 @@ in with self; { SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; - SPOT = derive2 { name="SPOT"; version="1.1.0"; sha256="1f1nafp7v8k50s5x8m5bg6r9sb5ihr08f1x4643jqhxf7fcz2x10"; depends=[AlgDesign emoa MASS mco randomForest rpart rsm]; }; + SPOT = derive2 { name="SPOT"; version="2.0.1"; sha256="0zyh0pn0mc7n150851vdqx3ixjn53id3pm3a408365h0wafcrn3g"; depends=[MASS randomForest]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; SPREDA = derive2 { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; @@ -2891,10 +2967,10 @@ in with self; { SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; }; SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; }; SSBtools = derive2 { name="SSBtools"; version="0.2.1"; sha256="1cqdmvh9gxyx2yciy0j54v84hl8cayifv368ip5y3k6g1cff6488"; depends=[]; }; - SSDM = derive2 { name="SSDM"; version="0.1.1"; sha256="1kg2694l42sbd0glzhvsykfpadmzarc275n88775g03as800vq1w"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.4.14"; sha256="13xj3nq4rfi5yih7h5gp01mpjyj6090sy9835p41k89pfdd6g71p"; depends=[MASS psych TSA TTR]; }; + SSDM = derive2 { name="SSDM"; version="0.2.2"; sha256="0xvlvmdfxbdk0xla75dgdhvka0ajh0fg80xxyn24rzi2rc830mnw"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; }; + SSDforR = derive2 { name="SSDforR"; version="1.4.15"; sha256="0vjfzjs2bhxzavcnlz5lq5f96pp2sw5zdzlz3vivxbmvzp50kbr7"; depends=[MASS psych TSA TTR]; }; SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; }; - SSN = derive2 { name="SSN"; version="1.1.8"; sha256="0r5l8yw9zq8ddmyhifl27r13bab7327kwb5grlpfx4yqpp11szyp"; depends=[BH igraph lattice maptools MASS Matrix rgeos RSQLite sp]; }; + SSN = derive2 { name="SSN"; version="1.1.10"; sha256="0fhwshl6vwf9cvbg8j284i27vayjrslk5hpyvrby390jma9klk4i"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; }; SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; SSRMST = derive2 { name="SSRMST"; version="0.1.0"; sha256="05bjc2bmsfykrddch7ynixqsq6z813wvibpwh37223q78xpb8nry"; depends=[survival survRM2]; }; SSrat = derive2 { name="SSrat"; version="1.0"; sha256="1qpsdfdngsgxx3mqgn4avl65w4v5v4jwsh1nnxzfn9iqi9mg4bhi"; depends=[plyr sna]; }; @@ -2904,7 +2980,7 @@ in with self; { STB = derive2 { name="STB"; version="0.6.3.1"; sha256="0fj1cfxqhijpxl41z799zd7id95jsb84ylrbqzrd1jlp80plyw83"; depends=[Matrix VCA]; }; STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; }; STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; }; - STMedianPolish = derive2 { name="STMedianPolish"; version="0.1"; sha256="1mysmigksrgkgzz7cng5vn8i7q4marq144dpwww30lisw2jgraiq"; depends=[maptools reshape2 sp spacetime zoo]; }; + STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; }; STPGA = derive2 { name="STPGA"; version="4.0"; sha256="198h2wzhv5lnyqypn7s5lilywby2pq3zdx8vk4qd72bybfwwli2c"; depends=[]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2-2"; sha256="01njc7drq01r3364081dv9gn37vrql52zbrb60gd559f3jshqx3m"; depends=[kernlab MASS]; }; @@ -2912,7 +2988,6 @@ in with self; { SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; }; SWMPr = derive2 { name="SWMPr"; version="2.2.0"; sha256="1nq3wc06c7fga9v69fwk3dr348lb127wd9ikb59lgnx2w86g83mk"; depends=[data_table dplyr ggmap ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.2"; sha256="1m057lhfaf0n35rs3sipia04qgkp04hv7wf7rvnr7bhzic9f4vg3"; depends=[FD mice vegan]; }; - Sabermetrics = derive2 { name="Sabermetrics"; version="2.0"; sha256="00axm9wxwzasjrld9nfn1wqzrm2ybm7i6xh6005m9lnkb6qwmvi3"; depends=[XML]; }; SafeBayes = derive2 { name="SafeBayes"; version="1.1"; sha256="09bhd3z9ia2mvpn1h0hil00j6cm4x9y9ymxc3gj8wd4ybdi3jqlm"; depends=[]; }; SafeQuant = derive2 { name="SafeQuant"; version="2.3.1"; sha256="0rgi0ij33sdvkpmjynfmsj0f29kl9l9ylsqckg5x4v49m6mzq1yh"; depends=[Biobase corrplot data_table epiR gplots limma optparse seqinr]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; @@ -2931,6 +3006,12 @@ in with self; { ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; SearchTrees = derive2 { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmxarypxpbisf78dlrmhzzg9y9hxpwz75pks1y56gqg"; depends=[]; }; SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; }; + SeerMapper2010East = derive2 { name="SeerMapper2010East"; version="1.2.0"; sha256="1lgjxixdgmgxy79s34pz7k4khhw5x4hs8m6yg8qiq813w4byqkls"; depends=[sp]; }; + SeerMapper2010Regs = derive2 { name="SeerMapper2010Regs"; version="1.2.0"; sha256="0sb0l539cwh76559znvgbi1wcbs7h53pmk1m8jz853wc266f8ibx"; depends=[sp]; }; + SeerMapper2010West = derive2 { name="SeerMapper2010West"; version="1.2.0"; sha256="0zdh3k813r4w23r2aa26bglvfv10xja2ibacnl2vairl3nzpa8vc"; depends=[sp]; }; + SeerMapperEast = derive2 { name="SeerMapperEast"; version="1.2.0"; sha256="1bafxrfjdq4ipml6zl6ng3piz8i6izm3b2daf8k1041mlbb35k6f"; depends=[sp]; }; + SeerMapperRegs = derive2 { name="SeerMapperRegs"; version="1.2.0"; sha256="16byqrwmjwhgsfav344m99jpl403k9ajqgv74ibwms9319xqfz59"; depends=[sp]; }; + SeerMapperWest = derive2 { name="SeerMapperWest"; version="1.2.0"; sha256="1mq88ljz86bk4mjj6pmrd8k61rf69s7g1j8by4c0s3c6fnkwb3qg"; depends=[sp]; }; SegCorr = derive2 { name="SegCorr"; version="1.1"; sha256="1hfkwfq4s3xm0wip82v000x5axkzkn4vkv6wima4mrnlvwi2yb9k"; depends=[cghseg]; }; Segmentor3IsBack = derive2 { name="Segmentor3IsBack"; version="2.0"; sha256="0c7ag9svd1xlm60padg41gvz7qnbcp41kg3cz2dvi9hy2yrqw0qd"; depends=[]; }; Sejong = derive2 { name="Sejong"; version="0.01"; sha256="1d9gw42dbs74w7xi8r9bs6dhl23y16yxqzyhqqayvcm98q3l77nf"; depends=[]; }; @@ -2952,8 +3033,8 @@ in with self; { SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; }; SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SequenceAnalysis = derive2 { name="SequenceAnalysis"; version="1.3"; sha256="0jrpq5ryw7rwkv99w0a5p3r0vj8nbzj6adlcsr84d9ffgxafmhif"; depends=[XML]; }; - Sequential = derive2 { name="Sequential"; version="2.3"; sha256="0z0ywrvc81gyk4wl810628gikaiadhbapbvkqf2ihr6n632cbr2z"; depends=[]; }; - SetMethods = derive2 { name="SetMethods"; version="2.0"; sha256="0ya8n4pin8j54gcc2fx99xgcrmnv9rm4r9a32nnylyqk49yj41dv"; depends=[betareg lattice QCA QCAGUI]; }; + Sequential = derive2 { name="Sequential"; version="2.3.1"; sha256="0rdcxmqysi9x8671zvjndaxp91g7h5a8qhcs0qb5zxh3pbrch0jk"; depends=[]; }; + SetMethods = derive2 { name="SetMethods"; version="2.1"; sha256="1n6pd6cs11qahbfimqg1mskvq364gs1hvjbyygr49pv28cb3rig7"; depends=[betareg lattice QCA]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.1.0"; sha256="0b5lkdhaymi3vsx9acdn9jxvqwwsac9lbdr43c44c06gglqlvk47"; depends=[]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; @@ -2965,15 +3046,16 @@ in with self; { ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.1.2"; sha256="1rfmsmqd4gq27scm3f0y7p5ivsmk20cjizfycp3sj8ng0qahjmaq"; depends=[]; }; SiMRiv = derive2 { name="SiMRiv"; version="0.9.1"; sha256="0aw2x9fgjzs8fiz5gqml333w3yi7k65jz611mbhjh26nvbgq82ls"; depends=[raster]; }; SiZer = derive2 { name="SiZer"; version="0.1-4"; sha256="0kiwvxrfa2b49r2iab5v2aysc2yzk5ck3h41f2hr0vq5pdnz0qy5"; depends=[boot]; }; + SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.5"; sha256="1i0zhawv0dl764ciyyr3r4sbql2xhhks2r8vbya10wnzyqipxmmb"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; }; SignifReg = derive2 { name="SignifReg"; version="1.0"; sha256="1360892wy0qc6dch3753s4a17l3pcijjmxd34zqvzl9534arlsxd"; depends=[]; }; - Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.6"; sha256="0hkh97yi7zpm6d87vapzlwyq7l8dra36wy3brfh6b827535wfg3k"; depends=[MASS rgl scatterplot3d]; }; + Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="3.7"; sha256="0g45mi7hd64h2ja215g61qa5v47vqlbfbbs15dsmlv4yygy1n2fx"; depends=[ks MASS misc3d rgl scatterplot3d]; }; SimComp = derive2 { name="SimComp"; version="2.2"; sha256="07gmlbwvv07kq3z7gq2jxlank011c0cqh8zwwp4pzf061d3gjdm6"; depends=[mratios multcomp mvtnorm]; }; SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.4.2"; sha256="04qs0b7sn170m65176p7gmk03dzm2jjgqknmc8kjab8snlrr3r3k"; depends=[evd]; }; - SimDesign = derive2 { name="SimDesign"; version="1.5"; sha256="00hyignxsy3h4qcr98rwsahahgg3p9xhz6dbpr2hn6ymdaxvddyb"; depends=[foreach pbapply plyr]; }; + SimDesign = derive2 { name="SimDesign"; version="1.6"; sha256="1517gfrxnhj3c8jj5qiqf9yg7y8h9q1175czb2ykx2c291b2qvac"; depends=[foreach pbapply plyr]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="3.0.0"; sha256="0pj99jrkx898rnjijvzcw7xxz0hka767a1b2khwlk5kpja7zx5ax"; depends=[Matrix]; }; + SimInf = derive2 { name="SimInf"; version="4.0.0"; sha256="04ap2yszy0v8kf5pclcqvr1bm5x5vwgdb4m9b3hr5iv345f5137h"; depends=[Matrix]; }; SimPhe = derive2 { name="SimPhe"; version="0.1.1"; sha256="00qqqsf7na5c9nslnfpbyr2ysf7d7bi6vnpfiy761nhg8vgf2vjv"; depends=[]; }; SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; }; SimReg = derive2 { name="SimReg"; version="3.0"; sha256="188q399xcrvjw7y7lf3hfbb7x0m0hc4zaf9i1w2c4xzswmvljd8r"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; }; @@ -2987,7 +3069,7 @@ in with self; { SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; }; SimultAnR = derive2 { name="SimultAnR"; version="1.1"; sha256="0jvmxwmbnx14h27b576dg9mw3c2z0w3m82f51f25zd1darcl06bj"; depends=[]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; - SixSigma = derive2 { name="SixSigma"; version="0.9-3"; sha256="04d09w1h6aq3j245gbj8cx7dsr88n4np6i751k9sx7lfx6al3w50"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; + SixSigma = derive2 { name="SixSigma"; version="0.9-4"; sha256="01bsr98m3a7i075f2q04jjmhqb2m9120w6yg1af168s25qymfjwy"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; }; SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; }; SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.3-2"; sha256="10vilra5z884xinqkvk7ryi4nsq5zxlyn5qh23lsajba3b3qwhaw"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; }; Skillings_Mack = derive2 { name="Skillings.Mack"; version="1.10"; sha256="0zxqiw87avw2rb2acj7mvpyfkf7iwnkshg73ib74y5ml9awmg2mw"; depends=[MASS matrixcalc]; }; @@ -3000,8 +3082,8 @@ in with self; { SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; }; Smisc = derive2 { name="Smisc"; version="0.3.6"; sha256="0knrgq6831rwr48880kvsmrl6c943nw3nkzds0sh63ljw0dp5ja7"; depends=[doParallel plyr]; }; SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; }; - SmoothHazard = derive2 { name="SmoothHazard"; version="1.2.3"; sha256="0p6hnq782d5qwmq6ak2rmbzx84lrsy02lr303gg3y0vln5i2myyn"; depends=[lava mvtnorm prodlim]; }; - SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.4"; sha256="06wzyjpzqclf794lapr67g8qrk9y253gksidpcgn8fmfz5443mrp"; depends=[jsonlite Rcpp stringr]; }; + SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.0"; sha256="122j7rr9d5pkyxlchlvs0zyfxxs1c9n4hj2kk9v9fws3gjlrrlds"; depends=[lava mvtnorm prodlim]; }; + SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.6"; sha256="1p15k57hi31i3p6v63v9s7hi1w9kb4aqjcgz405jk4klsifzw8va"; depends=[jsonlite Rcpp stringr]; }; SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; }; SocialMediaLab = derive2 { name="SocialMediaLab"; version="0.23.0"; sha256="1a62yklhyvcgsw50yg8r9cvdj54pi9ckzg0ms6v7zdbcd0k0nfbm"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; }; @@ -3022,10 +3104,10 @@ in with self; { SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; }; SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; }; SparseLearner = derive2 { name="SparseLearner"; version="1.0-2"; sha256="1qxycxpch2m2yyk97210gdzsizhlinc0hkhk5ak00rdgkrsxxc0k"; depends=[glmnet lqa mlbench qgraph RankAggreg SIS SiZer]; }; - SparseM = derive2 { name="SparseM"; version="1.74"; sha256="1fpfhld887y5lyb8jydprmv5krqm1fk6n53z942b4g4z1v4g04j7"; depends=[]; }; + SparseM = derive2 { name="SparseM"; version="1.76"; sha256="16xnl9cacim35aawq6bmd2y6rrhnh1kg6dwsy3k5yslkfr1y9j62"; depends=[]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.5"; sha256="004hbk5fdd5b5hdvg25wl1908pfya26brm2pz00zypfvis99lps3"; depends=[abind flare glasso longitudinal MASS mvtnorm network QUIC]; }; - SpatMCA = derive2 { name="SpatMCA"; version="1.0.0.1"; sha256="06l2ayjwawjp1kap76jqbnbjhx7x27z7vfn5jd0pz4g764krpfdr"; depends=[fields Rcpp RcppArmadillo RcppParallel]; }; - SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.1"; sha256="0yk6sisl07wqrl16mzk6ch7567l87qrqlnzg976zq2s58cd6y3vh"; depends=[Rcpp RcppArmadillo RcppParallel]; }; + SpatMCA = derive2 { name="SpatMCA"; version="1.0.0.2"; sha256="1xm29ybbdxspj2ylkkd9qh17sizz1gkc3l34y3d0ivmxz64vn6pj"; depends=[fields MASS Rcpp RcppArmadillo RcppParallel]; }; + SpatPCA = derive2 { name="SpatPCA"; version="1.1.1.2"; sha256="0v694bmfgwhpz2072f7gshqasd2vywvrbk5ncwq74xk5qrcpx9i7"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.2"; sha256="172i4khjb2fh818bq7wdfdm79fwxjwi60nqfj69dgbgcaww55ffr"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.1"; sha256="0bx31z91hf6vf22knf7bcn2j72jf123v8lvsfc7fjf0ssimqhpzz"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; }; SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-2"; sha256="0ywybk9gziy2hzb1ks88q4rzs3lzzy6y3fzhja2s39ngg195hi6l"; depends=[fields maps]; }; @@ -3037,33 +3119,34 @@ in with self; { SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.7"; sha256="0rc5zf8cnjw59azgqmslfz2dl5i17dfmb7ls5c849qybp2gn2zdv"; depends=[MASS Matrix]; }; SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.2"; sha256="1hwlyjpgzf2wgigbc49xcqhf6rzrjzkbriwa4i9gwpa0bnrs4wp1"; depends=[gsubfn splancs]; }; SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; }; - SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-1"; sha256="18l2dpyks6vay4vh24jmv81br9fblhm0rb1m6jpfj1qzpa974010"; depends=[Rcpp RcppArmadillo]; }; + SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-2"; sha256="0dnya9mzkf48clp51jrnkz6lc4fps38nn3lap7n2wcp3dvbvdycg"; depends=[Rcpp RcppArmadillo]; }; SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; }; SpherWave = derive2 { name="SpherWave"; version="1.2.2"; sha256="1wd9pql97m1zl0axzpkfq9sxadrm5cfax0gxh0ncqadaq7w7lml4"; depends=[fields]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.3"; sha256="195is72nj1vbhdx3yqmklmc9hqaaxvipgmcxszgvnqdv5bsiypgw"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; - SqlRender = derive2 { name="SqlRender"; version="1.2.0"; sha256="1ijp29skqpb9c1h3a3qby9511qfnawsbz8bg6kdl9cclww7a90ij"; depends=[rJava]; }; + SqlRender = derive2 { name="SqlRender"; version="1.3.0"; sha256="0rjfgaf08na66vjygd3pnx9qyl5q7x0w62llfw7qxb91j29z794w"; depends=[rJava]; }; StAMPP = derive2 { name="StAMPP"; version="1.4"; sha256="0rmp5l50dkkldq9xc1abhdxjhbwlqk3i3g0d8w3xissidnz5n31b"; depends=[adegenet doParallel foreach pegas]; }; - StMoMo = derive2 { name="StMoMo"; version="0.3.1"; sha256="0ly1bznixw4qbnag56xykj8gnfrzhqh5blsii32paalk0n920mrm"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; + StMoMo = derive2 { name="StMoMo"; version="0.4.0"; sha256="0zkcp19a76dm29fba5r96dxly709sic2k5p9hzc70cvwjhwhfr7v"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; }; StMoSim = derive2 { name="StMoSim"; version="3.0"; sha256="18mdgpn0x6338zzvc7nwccz6ypqmlpv7pzcy5fwx5y2wfkmdp4rm"; depends=[Rcpp RcppParallel]; }; StVAR = derive2 { name="StVAR"; version="1.1"; sha256="0wz5f5i9927fs1s8yczwqs022k912220m28l1sv5f0r081iv656i"; depends=[ADGofTest matlab MCMCpack numDeriv]; }; StableEstim = derive2 { name="StableEstim"; version="2.1"; sha256="0agi3bfp1xy5pfxxb9ib6xn434agmplgn7kg47nhbh47vf57vang"; depends=[fBasics MASS Matrix numDeriv stabledist testthat xtable]; }; Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; }; StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; }; - StanHeaders = derive2 { name="StanHeaders"; version="2.14.0-1"; sha256="18x23a7nmj5497g3i6a01cv5g34p0xdkb6srf9nwisbhshz25mxl"; depends=[]; }; + StanHeaders = derive2 { name="StanHeaders"; version="2.15.0-1"; sha256="0j3g73fm8ac9kfhb0kv4zk1j12i4klpcdlp71zwbv95v14ll38pf"; depends=[]; }; StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; }; StatDA = derive2 { name="StatDA"; version="1.6.9"; sha256="01bjygis14b3yfsfkjbvy0zlhjxysjf46cfcw8p4a4lwik3qp03b"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; StatMatch = derive2 { name="StatMatch"; version="1.2.5"; sha256="1162yqqrxkbpchdxdibpk5ccv55krvh9j150jgr047zzghr9ansa"; depends=[clue lpSolve proxy RANN survey]; }; StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; - StatMethRank = derive2 { name="StatMethRank"; version="1.3"; sha256="1jn7xg6f78lhpcd1b2bvjm90yws52klqz625lkwvwfmchwqrxi0i"; depends=[MASS pmr Rcpp rjags]; }; + StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; - StereoMorph = derive2 { name="StereoMorph"; version="1.6"; sha256="17c8r50i9wlvsq6gha56a4mhq84cmqm82j98zg4lb96jpydcp4dr"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; + StereoMorph = derive2 { name="StereoMorph"; version="1.6.1"; sha256="1q0fif4azv8nd37smhmr61mr4fls1jpm1ky40aqlv6kjm336pn1c"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; }; + Stickbreaker = derive2 { name="Stickbreaker"; version="1.0.0"; sha256="11g97yj61s09d1687algr9f80gcgw8fadc1vbadglxh7l9wxj6lv"; depends=[lattice nnet xtable]; }; StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.1"; sha256="0q6k90if74320mrs2ccq2izynylr8zakciwbc2c6ms0v57aalwic"; depends=[]; }; @@ -3073,11 +3156,11 @@ in with self; { StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; StroupGLMM = derive2 { name="StroupGLMM"; version="0.1.0"; sha256="1w0xizdmwqflfhqwygyq7fw5ci7pdzmr8dfv3j0g3ljbj84kndzd"; depends=[aod broom car ggplot2 lme4 lmerTest lsmeans MASS mutoss nlme pbkrtest phia survey]; }; - StructFDR = derive2 { name="StructFDR"; version="1.0"; sha256="13f9y6l7pcjmgyvhhk7qcl6k4j0krmg5m2bn3faq5ijpasw7m56x"; depends=[ape cluster nlme]; }; + StructFDR = derive2 { name="StructFDR"; version="1.2"; sha256="00h3mx7kf01snngkcarhyidqiycvnjhcs81x3kprgp6597md7ph1"; depends=[ape cluster dirmult matrixStats nlme]; }; SubCultCon = derive2 { name="SubCultCon"; version="1.0"; sha256="08q6k4nsv3gl5qk87s87smdg047yc2a4i7kg0fp08i7q7h62jkvz"; depends=[]; }; SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; }; SubVis = derive2 { name="SubVis"; version="2.0.1"; sha256="1r9i27hx8xj8f3mhbm8ygcxwpq1lzxm26vay5mqk4q9swskg1vbh"; depends=[Biostrings shiny]; }; - SubgrpID = derive2 { name="SubgrpID"; version="0.10"; sha256="1gvlvsvc9v20l24zxy9i57bzj1gjplzk14fpjrhallsnp23h8zn5"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; + SubgrpID = derive2 { name="SubgrpID"; version="0.11"; sha256="1by23gdkbls7l5xa9nl055nbm0d3138pmfmasqmcy42h62wf7dw6"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; }; SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; }; SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; }; Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; }; @@ -3086,7 +3169,7 @@ in with self; { SuperLearner = derive2 { name="SuperLearner"; version="2.0-21"; sha256="0j349yv510s1qjkpks24qrfgr2bip1m70i5dh9ydlna280k43dbh"; depends=[cvAUC nnls]; }; SuperRanker = derive2 { name="SuperRanker"; version="1.0.1"; sha256="0s5d38xaan4jznb3nlr9rj054haf6wks0229lggykj8mfz746wky"; depends=[prodlim Rcpp]; }; SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; }; - Surrogate = derive2 { name="Surrogate"; version="0.1-79"; sha256="1ilh9w6v73aafsxcanhdjz2whsng2vyhkv240smmqifcl93kl208"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; + Surrogate = derive2 { name="Surrogate"; version="0.1-801"; sha256="1ki4mqym7vgzvqxj19iksdn8fyv352hv0f91s91djdm02hkjl8ap"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.0"; sha256="0iqjimrljh9iaw3s406v6j03xg62ysf9xdia1yxr2ray38j8148c"; depends=[cubature MASS mvtnorm nlme simex survival]; }; SurvLong = derive2 { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; }; @@ -3098,14 +3181,15 @@ in with self; { SweaveListingUtils = derive2 { name="SweaveListingUtils"; version="0.7.5"; sha256="0b975il4pfnxw709ar74w49k18b6znrjrm71vw6xl0qid8xwqpfa"; depends=[startupmsg]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.4"; sha256="1avc32q7nbwjkcbml7z05car6khv1ghcz3miw0krm8i53w032c6f"; depends=[]; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; + SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.2.1"; sha256="0360pdx2p8a6519y3ik5xfdm2yxndyl31p3bb73nj4ihmr4w6lmj"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; SynergizeR = derive2 { name="SynergizeR"; version="0.2"; sha256="0z32ylrjjvp8kr6lghhg57yq1laf9r0h8l3adysvis8bbpz2q2sj"; depends=[RCurl RJSONIO]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; }; - TAM = derive2 { name="TAM"; version="1.99999-31"; sha256="0h2545b7hc417g5k9g482gk74mz15d0vqxviw60fqizxinxghlwv"; depends=[CDM GPArotation lattice lavaan MASS msm mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc tensor WrightMap]; }; - TANDEM = derive2 { name="TANDEM"; version="1.0.0"; sha256="1zrx5zbfz0zrw46iziqnb11m75ri75dw1x88fd2dhw22am3q2940"; depends=[glmnet Matrix]; }; + TAM = derive2 { name="TAM"; version="2.0-37"; sha256="06hm0xx01vbyp1xc22rl3wqw6i3f68qmkkrrdilrhb3kx7gzha9a"; depends=[CDM GPArotation lattice lavaan MASS mvtnorm plyr psych Rcpp RcppArmadillo sfsmisc WrightMap]; }; + TANDEM = derive2 { name="TANDEM"; version="1.0.1"; sha256="00k99inrb7ibg8g80ci22hnphnd7cwd078yxqlbwgacjxaqa36cj"; depends=[glmnet Matrix]; }; TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2016.12-1"; sha256="1b3v30zi6ssac866grhgki2bpzbk06pd8vrfya3zcc5anry699bm"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; @@ -3117,7 +3201,6 @@ in with self; { TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; }; TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; - TDMR = derive2 { name="TDMR"; version="1.4"; sha256="1vaa75bazpk6fa34cahc597ifs307n4d8gq0r50q6rpm5rs0mnxx"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="0.99"; sha256="1kyhs4rpkm3gr55l6hrz4xcb9igk95si1m1sp175580k16n885z0"; depends=[plyr]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; TED = derive2 { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; }; @@ -3136,28 +3219,30 @@ in with self; { TInPosition = derive2 { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; }; - TLMoments = derive2 { name="TLMoments"; version="0.6.3.1"; sha256="1rcix93s70lwjpmlfxqjrdphkp3p84pmxjxxchsm05qif7y6iwn1"; depends=[evd hypergeo Rcpp]; }; + TLMoments = derive2 { name="TLMoments"; version="0.7.2.1"; sha256="1xgkbdnh79dj54jg5kf0c5kwykcvjaf4y16yyqf0vcc7aand6a3y"; depends=[hypergeo Rcpp]; }; TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; }; - TMB = derive2 { name="TMB"; version="1.7.8"; sha256="0dwfz6js35wb28qah85m3y2ddkfbiy567402npmyqr4wrh8l37p3"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.7.9"; sha256="1srjy4j3rn8arvqd7bsd9snczw6g0g5zwm18dckxddg84ld9qbqr"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; }; TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; }; - TOSTER = derive2 { name="TOSTER"; version="0.1.3"; sha256="15a7g1ccxk9xjcs3gysq8h4p0gd7527yq5zy6k9ara68a8f2dz1r"; depends=[]; }; + TOSTER = derive2 { name="TOSTER"; version="0.2.3"; sha256="1wyzlil7sznf0gldnmga9qkbj4qcfrbpm8imns18dpfrz3kxaw4i"; depends=[ggplot2 jmvcore R6]; }; TP_idm = derive2 { name="TP.idm"; version="1.2"; sha256="08n5bgc7gw1cbn9q7kd6jfxcwmb5mfjmdmhkhr35fi5ah21a57mh"; depends=[]; }; TPEA = derive2 { name="TPEA"; version="3.0"; sha256="1ppy9jf0mb43vwnn5qd65g5dxf7wv3agf5rkldyas5y1ynsnbvlg"; depends=[foreach igraph Matrix MESS RCurl XML]; }; TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; }; - TR8 = derive2 { name="TR8"; version="0.9.15"; sha256="16mijxxddvnr3ii4v0djx5l844bp36pypmqn2r6gp3jwp9jn8czx"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; + TR8 = derive2 { name="TR8"; version="0.9.16"; sha256="04zn01hqvza7pkc3pmiwiygdkawa39wc3g875mdvd5hjhi4ffkaf"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; }; TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; }; TRAMPR = derive2 { name="TRAMPR"; version="1.0-8"; sha256="0nxp8wdr7yx94fk14m0r4dh2jxcvjqp6lg02092zww5y7jlbf4ds"; depends=[]; }; TRD = derive2 { name="TRD"; version="1.1"; sha256="0bhn4bcrq39f5dgqc74jqsfhs1iqfxhawacqqyncbk2372013nqp"; depends=[Rlab]; }; TROM = derive2 { name="TROM"; version="1.2"; sha256="1gfnlchaa16q9cksrgdkissy2fz481bcbac0cmxnc4vb0vbnz4h5"; depends=[AnnotationDbi GO_db gplots gtools lattice openxlsx RColorBrewer topGO]; }; TRSbook = derive2 { name="TRSbook"; version="1.0.1"; sha256="1w2yl5pchw2vn9l3qnm1ra9mjy946i5xsxh5n5xdvrcj2kak50x5"; depends=[gdata IndependenceTests RColorBrewer xtable]; }; TSA = derive2 { name="TSA"; version="1.01"; sha256="0cm97hwxm6vfgy9mc3kgwq6dnmn86p8a4avnfjbai048qnwrn6hx"; depends=[leaps locfit mgcv tseries]; }; - TSHRC = derive2 { name="TSHRC"; version="0.1-4"; sha256="04pvh3vhgx3pj3sgkbxsqdwjglqbmaaj0rsb8b4q162bh608d9zl"; depends=[]; }; + TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; }; + TSHRC = derive2 { name="TSHRC"; version="0.1-5"; sha256="05vv2zdkzlg04dicwa0lyww92fiafr7bnvsbm6990xkip1lf3cih"; depends=[]; }; + TSMN = derive2 { name="TSMN"; version="1.0.0"; sha256="12wgcc7szbcbk3d1a17wz96rlwp5l39cn0i03hjsb0sbrs7mjwg5"; depends=[]; }; TSMining = derive2 { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; }; TSMySQL = derive2 { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; }; TSP = derive2 { name="TSP"; version="1.1-5"; sha256="03xxfr5kk4zhzpb1q1pwncdp0dhchm9b48wzhvvxn2dxf3mnby2w"; depends=[foreach]; }; TSPostgreSQL = derive2 { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; - TSPred = derive2 { name="TSPred"; version="2.0"; sha256="0p4msk12n8jc1ss8p7m15rxd0ip7v83c5p78v26nk5dz21a4xprp"; depends=[forecast]; }; + TSPred = derive2 { name="TSPred"; version="3.0.2"; sha256="0cbf5h3yrissng4xqrgbisarml772mg6b2ap508imf29zfks76gn"; depends=[forecast KFAS MuMIn]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.1.02"; sha256="1rvxbzhdzjb4f3b4pk53iwv0vpw8s0z8k1fyfpcxvy333f68d59f"; depends=[bfast broom ggplot2 RcppRoll strucchange]; }; TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; @@ -3187,11 +3272,12 @@ in with self; { TapeR = derive2 { name="TapeR"; version="0.3.3"; sha256="0q5j7pn05z7hinwl5ypnrgh9ibsw6hvdfszjbnvavzab3bx8l6nn"; depends=[nlme pracma]; }; Tariff = derive2 { name="Tariff"; version="1.0.2"; sha256="0x139hhjjc1iyx9m3h5vdjh57q5kbc6x1mzjysz0ibnqpvhanjb2"; depends=[]; }; TauP_R = derive2 { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; }; - TauStar = derive2 { name="TauStar"; version="1.1.0"; sha256="1z5n1wfzc9c6zlxbr1vszp492vlq105p28n8jf5gkzsjraznk9zv"; depends=[Rcpp RcppArmadillo]; }; + TauStar = derive2 { name="TauStar"; version="1.1.3"; sha256="06iq3kjbhyx2i8qlhvamnlch4j32psgw8q0wnvs4js513r6c0cqn"; depends=[Rcpp RcppArmadillo]; }; Taxonstand = derive2 { name="Taxonstand"; version="1.8"; sha256="1lxnfzg6r0ak1c1xrgakcbqnqpg1vqni5xh6hk89xxbdl8zgaa91"; depends=[]; }; TcGSA = derive2 { name="TcGSA"; version="0.10.1"; sha256="05cghnxn5r0ldr8cw371bz0iqx2b73b2qa77xj78xj7a950yvxhw"; depends=[cluster ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; }; Tcomp = derive2 { name="Tcomp"; version="1.0.0"; sha256="0ddswvww9yk31gh8qb9nh0glf9w2mp3ny7zps79kdcnvbkrpcbfs"; depends=[forecast Mcomp]; }; - TeachBayes = derive2 { name="TeachBayes"; version="0.1.0"; sha256="0izxdgjzjclnfg01v1inkm4mb4h56nn9y0ilc54m4rrayicvs071"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; + TeXCheckR = derive2 { name="TeXCheckR"; version="0.1.1"; sha256="13s73vq7rqf3ayfacrrd7dpb9ann5dvmcpl8flhjwnh3gxrghjgm"; depends=[clisymbols crayon data_table dplyr gmailr hunspell magrittr readr stringi twitteR zoo]; }; + TeachBayes = derive2 { name="TeachBayes"; version="1.0"; sha256="1mfhlkm7wp2i4hvc63xzfyw3q4z1xhlbi933pkqkbrhih94z4rz7"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; }; TeachNet = derive2 { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; }; TeachingDemos = derive2 { name="TeachingDemos"; version="2.10"; sha256="016pivvy8gzz8f3clnr5dg488rb1lf0l5s00c3v34gm1dgiw5x1f"; depends=[]; }; TeachingSampling = derive2 { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; }; @@ -3200,7 +3286,7 @@ in with self; { TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestSurvRec = derive2 { name="TestSurvRec"; version="1.2.1"; sha256="05f5gc8hvz09hx015jzis6ikki9c1brdq7l7a9bxm9bqbcc9f2f9"; depends=[boot survrec]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.0"; sha256="1fagy9168cz09p460pa0qyn8m79zg4i2b9j5vg8gm1ssqi2znsl9"; depends=[alabama DoseFinding lattice]; }; - Thermimage = derive2 { name="Thermimage"; version="2.2.3"; sha256="16pwykp33bwmca7dlcr4ia3sakfdazxxk501v4rcr735767fsvyh"; depends=[png tiff]; }; + Thermimage = derive2 { name="Thermimage"; version="3.0.0"; sha256="0l098praarg5kg0m5hxs9zbwhl8w7g48ngyiry1rlwkp2rsl3cza"; depends=[png tiff]; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-0"; sha256="075cn99k06lgdd0cwl1i9242fcxwmd5malcyks0mmwjf9kzw00z2"; depends=[MASS numDeriv]; }; ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; }; @@ -3221,8 +3307,8 @@ in with self; { TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.0-5"; sha256="0n0kw90nzyh8ik09kp1lq301rhdink6dqzd6xw9qkl10z8rzq7v1"; depends=[DescTools mclust TeachingDemos]; }; TippingPoint = derive2 { name="TippingPoint"; version="1.1.0"; sha256="1f5bfag892yk47r1pw2rlvqz9qnkaz8radprpxh0q0knviw3f9fp"; depends=[bayesSurv ggplot2 RColorBrewer reshape2]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.1"; sha256="0flx4l7q3qndp77349ayfrszyim7mvs7yfvv3j9a1mhf3gdn9j14"; depends=[expm huge igraph rTensor]; }; - Tmisc = derive2 { name="Tmisc"; version="0.1.12"; sha256="1awmc2gdas90hz66wiy4n7yqz3p0bl65adx0l6q7zx88w8nxn6lw"; depends=[audio dplyr]; }; - Tnseq = derive2 { name="Tnseq"; version="0.1.1"; sha256="00pd51mmy2w5cpxrx2zh5jmpcirj8ynma3whnv1nmdy4lf10mn50"; depends=[Biobase Ckmeans_1d_dp DESeq edgeR limma]; }; + Tmisc = derive2 { name="Tmisc"; version="0.1.13"; sha256="1y3907aqr8k8qdl4pa6msjf80fwqmc63ga9hbvjvdn20h8w39a55"; depends=[audio dplyr]; }; + Tnseq = derive2 { name="Tnseq"; version="0.1.2"; sha256="1n76yzk15p8i5bp3k6fszmdqk2d791r4sb8hg5hb61zb92r7wqlj"; depends=[Biobase Ckmeans_1d_dp DESeq edgeR limma]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="0.1"; sha256="1477zp8jzq1p22q8484vkrdx5nxwq4i44mxg4zhj9fixiw4shpx9"; depends=[ape]; }; TraMineR = derive2 { name="TraMineR"; version="1.8-13"; sha256="058fj2jkr9hzpigmawzfv20c7dzdf70lwwxng46x0b1r34pdgrfr"; depends=[boot Hmisc RColorBrewer]; }; @@ -3234,15 +3320,15 @@ in with self; { TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransferEntropy = derive2 { name="TransferEntropy"; version="1.4"; sha256="0620axdj6qyskf7xszrs8j5d2l73ns4bgbdg03fvr8i7jmq70zb8"; depends=[BH Rcpp]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.0.3"; sha256="00z85vmpy7k4vi2jj9yspybc9hkwqqfnvl1x9jqayyb8xw8wk0f6"; depends=[binom ggplot2 survival]; }; - TreeBUGS = derive2 { name="TreeBUGS"; version="1.0.1"; sha256="19nszlw5xgvd4r8rn6a4ayhx2nxxrmqw1ji4pbvn01y15cfyilfq"; depends=[coda hypergeo MASS Rcpp RcppArmadillo rjags runjags]; }; + TreeBUGS = derive2 { name="TreeBUGS"; version="1.1.0"; sha256="1xw3wqax6d8pys2177cj6bdp92xx7pr08y6qa1g3k83hhi2frikw"; depends=[coda hypergeo MASS Rcpp RcppArmadillo rjags runjags]; }; TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; - TreeSim = derive2 { name="TreeSim"; version="2.2"; sha256="1c61afb49kjlfb6iy69vk2bgl20g8bhsbwnai2d2shmv1nimi5jf"; depends=[ape geiger laser]; }; + TreeSim = derive2 { name="TreeSim"; version="2.3"; sha256="1y98m2whpx9kssgklw2d6prs6af9vcn8yva1l7lm1l509py1fn6h"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="1.2"; sha256="0y6hadwx3apw11jy5d4al3dav3his8b4xvkv7s5d5rd92l7yrw0r"; depends=[TreeSim]; }; TrendInTrend = derive2 { name="TrendInTrend"; version="1.0.1"; sha256="1fph4sz3y7drni0mjivz82jvmfa8hp468vmqk00k51w4nkg3hyif"; depends=[]; }; TriMatch = derive2 { name="TriMatch"; version="0.9.7"; sha256="06idgh9bwwbwa16hlc2kgm06n9shzm0825f7k65zpz3isq23dp7q"; depends=[ez ggplot2 gridExtra PSAgraphics psych reshape2 scales]; }; TrialSize = derive2 { name="TrialSize"; version="1.3"; sha256="1hikhw2l7d3c7cg4p7zzrgdwhy9g4rv06znpw5mc6kwinyakp75q"; depends=[]; }; TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; - TropFishR = derive2 { name="TropFishR"; version="1.1"; sha256="0iv7v2wl899mw4c9nwgn530spc9vz0klhbrkc9ssazzrpxn3lq21"; depends=[beepr doParallel GA GenSA MASS msm propagate reshape2]; }; + TropFishR = derive2 { name="TropFishR"; version="1.1.3"; sha256="114vg4jvb1k7mzz81ag1hs7zvpnq4ql68p55xbci24gi3qg5s7cj"; depends=[beepr doParallel GA GenSA MASS msm propagate reshape2]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="1.0"; sha256="1qj18xcq58xah1niwxgqqzscl7dfgxh2s8fdbzk1vigwwm5xfvij"; depends=[randtoolbox]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.1-5"; sha256="08s9scsd2l6wavc7qqlffjbf89vkd6xpb4iawvbqf7jh8jiyvw17"; depends=[]; }; @@ -3256,7 +3342,7 @@ in with self; { UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; UNF = derive2 { name="UNF"; version="2.0.5"; sha256="1lag4aby81nnd7w8f68zswgm4afp24xhj72k0v7cka9hyxz0p129"; depends=[base64enc digest]; }; - UPMASK = derive2 { name="UPMASK"; version="1.0"; sha256="19krsqkz2g5b6svqp29s6i92bhlk7liv8lf7d03za848w7y2jkhq"; depends=[DBI MASS RSQLite]; }; + UPMASK = derive2 { name="UPMASK"; version="1.1"; sha256="1qxajvld8g2mii12agypcm50fps9bai6d2wx6l0bv3srk80in7ai"; depends=[DBI MASS RSQLite]; }; USAboundaries = derive2 { name="USAboundaries"; version="0.2.0"; sha256="1if3wf22h395iqcn1n5rfnacwhxd3mpmbvygdwbs2amk55r18vg4"; depends=[sp]; }; USGSstates2k = derive2 { name="USGSstates2k"; version="1.0.1"; sha256="11yk0pkss23j6fmmxnjkjm9p24ln343y4hijigbrbvcnb21wj2py"; depends=[sp]; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; }; @@ -3265,18 +3351,18 @@ in with self; { UScensus2010 = derive2 { name="UScensus2010"; version="0.11"; sha256="1q06spkh8f4ijvfg557rl3176ki4i8a1y39cyqm3v7mnzwckyj3l"; depends=[foreign maptools sp]; }; UStatBookABSC = derive2 { name="UStatBookABSC"; version="1.0.0"; sha256="16r6clhfaalfsg5hmvzm8a128zygxax5hyc0vr1q9bsw9hj7cs0c"; depends=[]; }; UWHAM = derive2 { name="UWHAM"; version="1.0"; sha256="1qaj8anaxqnx4nc6vvzda9hhhzqk9qp8q7bxm26qgia4hgascnrv"; depends=[trust]; }; - Ultimixt = derive2 { name="Ultimixt"; version="2.0"; sha256="18xg1z41nccwzn9mdzpap41ffp4cmfww8bwk10m1v96acf9kq2i5"; depends=[coda gtools]; }; + Ultimixt = derive2 { name="Ultimixt"; version="2.1"; sha256="0fh2qpm7qpv1170jzbmzqhvwsn69lblizzisgasswy2nix2jjz4y"; depends=[coda gtools]; }; UncerIn2 = derive2 { name="UncerIn2"; version="2.0"; sha256="08cg7armz9xwwn1222aws98cwrvmw0s73pxpnszmrmrli1qs92k1"; depends=[automap fields geoR gstat RandomFields Rcpp sp]; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.3.0"; sha256="09x52g691qqsphy2sppm3852gak0ammsan4x306vd16yz9z0zlb2"; depends=[nloptr reshape2 rootSolve]; }; Unicode = derive2 { name="Unicode"; version="9.0.0-1"; sha256="1daf4wlglqzha0p6cbmrkwn4ppkzfvpvg1aa64gphr4dg2g5jsdf"; depends=[]; }; - UpSetR = derive2 { name="UpSetR"; version="1.3.2"; sha256="0b8nms8b3n6m2ya1ms68crya41k0kq149kxg5999fw5lykx35bjr"; depends=[ggplot2 gridExtra plyr scales]; }; + UpSetR = derive2 { name="UpSetR"; version="1.3.3"; sha256="08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz"; depends=[ggplot2 gridExtra plyr scales]; }; UsingR = derive2 { name="UsingR"; version="2.0-5"; sha256="1w1swcb5srb2b76agbh3mipz8b3vbhpnhxfhg7k546y38j3crafq"; depends=[HistData Hmisc MASS]; }; - V8 = derive2 { name="V8"; version="1.2"; sha256="1sdjmg3d8m0jmfs7zmz7cpw4ffar76nia2dzymnb373alm1gwlh6"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="1.4"; sha256="0k97cz7hzlqpbwcmzpxd86hb8fbxqj70zshlnn4hnayjx0jaybi4"; depends=[curl jsonlite Rcpp]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; VARSEDIG = derive2 { name="VARSEDIG"; version="1.3"; sha256="1qvc9lyfdc0irivi4y27hc5yn5lk05nbgqx7zcj602s0r7i7nvln"; depends=[]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; }; - VBmix = derive2 { name="VBmix"; version="0.3.1"; sha256="0gicp470w6xy2z4r54ywjd4c9cck2yhhw7ismdp4jm9zsvc7nv1y"; depends=[lattice mnormt pixmap]; }; + VBmix = derive2 { name="VBmix"; version="0.3.2"; sha256="09kgllh8wbsgx9ykv95igczy4hi8d8grvffvdkp2zygdiyvkhsxa"; depends=[lattice mnormt pixmap]; }; VCA = derive2 { name="VCA"; version="1.3.2"; sha256="10d8vw6ihnsmqgvbfd6dwdilk9mz9wvmlxi39fpq219mqvqyzkah"; depends=[lme4 Matrix numDeriv]; }; VDA = derive2 { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; }; VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; }; @@ -3286,18 +3372,19 @@ in with self; { VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; }; - VIM = derive2 { name="VIM"; version="4.6.0"; sha256="1yl6bsdigwjfkdn5mbfrw10ip1xr7scw1mvykdwgzkyfnlb8z86w"; depends=[car colorspace data_table e1071 laeken MASS nnet Rcpp robustbase sp vcd]; }; + VIM = derive2 { name="VIM"; version="4.7.0"; sha256="1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"; depends=[car colorspace data_table e1071 laeken MASS nnet Rcpp robustbase sp vcd]; }; VIMGUI = derive2 { name="VIMGUI"; version="0.10.0"; sha256="14na9ss0vkcys979kdcciynwssqsvy2w566nydgzd3n7gcmx2agm"; depends=[Cairo foreign gWidgets gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; }; VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; }; VLMC = derive2 { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; }; VNM = derive2 { name="VNM"; version="4.1"; sha256="1vmdm4f7y69imsbxnd7q85q1ygcyl94pq5n7f33d0sd8rw51dmdj"; depends=[Rcpp]; }; - VPdtw = derive2 { name="VPdtw"; version="2.1-11"; sha256="0qsw5mqv36k8mcvwj1ka41z5kc05yn79wv41ai8f5412sbngihlr"; depends=[]; }; VRPM = derive2 { name="VRPM"; version="1.1"; sha256="19rr31w0yzy7w9k34ny2sjk9ijwgnkfzbdizdch77g9rnpzpw597"; depends=[fields ggplot2 Hmisc kernlab R2HTML ROCR shiny survival viridis]; }; VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; }; VSURF = derive2 { name="VSURF"; version="1.0.3"; sha256="0fgy1qk1jkrnil4cirkp2lj21xjwbpgjgxqrsjs321s69rw2dy1j"; depends=[doParallel foreach randomForest rpart]; }; VTrack = derive2 { name="VTrack"; version="1.11"; sha256="1w8zp7l60mwzppg3gqq0zv5a065y0vdrp2v0x0yl4a8jq0zlvppx"; depends=[doParallel foreach plotKML sp spacetime]; }; VWPre = derive2 { name="VWPre"; version="0.9.5"; sha256="1qxaq60zpb8hdpq3c17sm77jvm8r0yy88xvq1k8i52ggn8nn7gsc"; depends=[dplyr ggplot2 lazyeval mgcv shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; + VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; + VarReg = derive2 { name="VarReg"; version="1.0"; sha256="1xbm5l1jxcmjk38hl61bz2zyfcwa932487l03dzr8izxcain1dfi"; depends=[sn survival]; }; VarSelLCM = derive2 { name="VarSelLCM"; version="1.2"; sha256="1pzcadzg1snv2nkdrbhgi6scrd70cawprncm8hs82gcl3r9dscic"; depends=[Rcpp RcppArmadillo]; }; VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.1.11"; sha256="1pxv6f7bz7g75hk3y7ndc9qcf49fzl82xc8f165w18wgkqk0v6a4"; depends=[RCurl RISmed stringi stringr XML XML2R]; }; @@ -3310,7 +3397,8 @@ in with self; { VecStatGraphs3D = derive2 { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; VennDiagram = derive2 { name="VennDiagram"; version="1.6.17"; sha256="14cahgxm5kq133j5wv6p7ivlmcmym5r39v4dpj69wnq6w9rjqki8"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; - VetResearchLMM = derive2 { name="VetResearchLMM"; version="0.1.0"; sha256="0k5mr9426v1b3kqnzrb1nizrsvjmm5qx6fybrnn0y1j2w7hk99jr"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; + VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; + VetResearchLMM = derive2 { name="VetResearchLMM"; version="0.2.0"; sha256="1vx72pn3fl27mjsa48kz5j1sj1bkjq8q0ifs5dxdfrcdswfqhjcw"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; }; ViSiElse = derive2 { name="ViSiElse"; version="1.2.0"; sha256="0k5hhzyjws0haawx2r2c0rxjbjdfx821x0jmj88786q6x67x86n0"; depends=[chron colorspace Matrix stringr]; }; VideoComparison = derive2 { name="VideoComparison"; version="0.15"; sha256="0592fz0v4xvq1qy2hj4ph90v7zn1cnzr6a094mp9p1k61ki3fbg2"; depends=[pracma Rcpp RCurl RJSONIO zoo]; }; VineCopula = derive2 { name="VineCopula"; version="2.1.1"; sha256="1cqfa7s3gqrbdhjy2v8yn44k6vlxpzi0bmlcpzf9kkzy36p3vz84"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; }; @@ -3328,28 +3416,29 @@ in with self; { WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; WGCNA = derive2 { name="WGCNA"; version="1.51"; sha256="0hzvnhw76vwg8bl8x368f0c5szpwb8323bmrb3bir93i5bmfjsxx"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore survival]; }; WHO = derive2 { name="WHO"; version="0.2"; sha256="0rpk7ddpkjcqs0m7cgxs55k178js0d70ccfximp2vqrsw0igkmk9"; depends=[dplyr httr]; }; + WLreg = derive2 { name="WLreg"; version="1.0.0"; sha256="0paghjcshhrr6y1gm98d6gr78zvgzhl678g9f96hppfa4q3lfpr7"; depends=[inline survival]; }; WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; }; WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; }; WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; }; WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; }; WRS2 = derive2 { name="WRS2"; version="0.9-1"; sha256="0w7qnqf289p5jnfr9l83bcplxg1rvbhc90iz7wwnphx7246nkdvv"; depends=[MASS mc2d plyr reshape]; }; WRTDStidal = derive2 { name="WRTDStidal"; version="1.0.1"; sha256="14xi1wksyj07nch678dd4rbaa3q1in4nbsarv5bijl2b11dhfi7j"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate quantreg RColorBrewer survival tidyr]; }; - WVPlots = derive2 { name="WVPlots"; version="0.2.2"; sha256="11zbmsq2nbvb9m7wkybwcmk1lj6n8w1v355qwsp41j9pd7r3ccw8"; depends=[ggplot2 gridExtra mgcv replyr reshape2 sigr wrapr]; }; + WVPlots = derive2 { name="WVPlots"; version="0.2.3"; sha256="1664gbhpn02qcgxvw5adqk2kdx8zrlrm5ca5f7d9c3k7a3db00ih"; depends=[ggplot2 gridExtra mgcv replyr reshape2 sigr wrapr]; }; WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; - WWR = derive2 { name="WWR"; version="1.0.0"; sha256="0nsgcasdgzxxlnpicmq9n9200gg2c2si3gfpwaxdy4ccwasgjq6p"; depends=[]; }; + WWR = derive2 { name="WWR"; version="1.1.0"; sha256="19pq31ivga8yy9hxmw3birbbnhrph52hazydagz9d44az2x2877x"; depends=[inline]; }; WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; Wats = derive2 { name="Wats"; version="0.10.3"; sha256="1wh4wxzmdj154mh61ng4bg827hpx1kw85x34c1d7xdpbq3wag4g1"; depends=[colorspace ggplot2 lubridate plyr RColorBrewer testit zoo]; }; WaveLetLongMemory = derive2 { name="WaveLetLongMemory"; version="0.1.0"; sha256="1qfh5ca8389b3zimqfrlhjyzkrvvj3dixhbab1a0wrnbcc55dcq1"; depends=[fracdiff wmtsa]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.0"; sha256="16ghxqjbv39pmgd52im6ilkkh0hpnaw8ns0hwkngpbr479m1grdp"; depends=[]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; - WebGestaltR = derive2 { name="WebGestaltR"; version="0.0.5"; sha256="17h7gq14mnwfjgiyf8gwvy7z60rwd13bqgbx6pkxqf95j48k0bsg"; depends=[data_table doParallel foreach pkgmaker rjson rPython]; }; + WebGestaltR = derive2 { name="WebGestaltR"; version="0.0.8"; sha256="0wwxqfskrj5g50g223cdr33l8n7z3psi1gwl34261fv1v48nxxvr"; depends=[data_table doParallel foreach pkgmaker PythonInR rjson]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; WeightedCluster = derive2 { name="WeightedCluster"; version="1.2"; sha256="1d0df284fzfa34fi7b3d7f4zzm9ppyah46rj865446l5pjvl9np3"; depends=[cluster RColorBrewer TraMineR]; }; WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; }; - WhatIf = derive2 { name="WhatIf"; version="1.5-6"; sha256="02lqvirnf24jn8b2s08z5fjmpilp2z08lww1s793n3pn783adbky"; depends=[lpSolve]; }; - WhiteStripe = derive2 { name="WhiteStripe"; version="1.1.1"; sha256="1naavgkvgky3lzg5vlz11g589cxr0fgiqz2waz86da1ksk4a19gw"; depends=[mgcv oro_nifti]; }; - WhopGenome = derive2 { name="WhopGenome"; version="0.9.6"; sha256="038bg8c3y9h5hbkicikdqcjli5cf1bpmsc021zi00bgsk8z4i1iq"; depends=[]; }; + WhatIf = derive2 { name="WhatIf"; version="1.5-8"; sha256="0vnkb16ap1aiqbmcw18cr558kyixq0rmfcwh0bp6v1djwb78adhd"; depends=[lpSolve Zelig]; }; + WhiteStripe = derive2 { name="WhiteStripe"; version="2.2.2"; sha256="0jaxy5a4m4ir25assi2dsdgfcm88lbgjdghsh36v7zvhblrfcfap"; depends=[mgcv oro_nifti]; }; + WhopGenome = derive2 { name="WhopGenome"; version="0.9.7"; sha256="1xa7d9x5ny8g79scfkv7v5ix9m3mfzg0fks2bsan9zqyhcd01fsq"; depends=[]; }; WiSEBoot = derive2 { name="WiSEBoot"; version="1.4.0"; sha256="1fch78884ay7m2gy602k8df78gkvjiwzkjk550w0k4xbv430ld0h"; depends=[FAdist wavethresh]; }; WikiSocio = derive2 { name="WikiSocio"; version="0.7.0"; sha256="1rc90cidc8mj8x7vw82vx41ivwnmil3cmc1whc8ghxrwli256w32"; depends=[httr igraph pbapply plyr RCurl stringr XML]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="0.1.0"; sha256="17vnfarnqf5cqdldgwg505vcj2l0hji409zdyncks7xcq8myvswz"; depends=[dplyr httr jsonlite]; }; @@ -3363,12 +3452,12 @@ in with self; { WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; }; WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="0.6.1"; sha256="0nshs1c00f2cw7wmrphz1833gd336bckqa9h0q90hxj388kwis3y"; depends=[dplyr httr jsonlite]; }; - XBRL = derive2 { name="XBRL"; version="0.99.17"; sha256="00dg9624hc1l8c0nw1ma4ykgkmjzk3gqf77ndnagddh65cqbiigq"; depends=[Rcpp]; }; - XGR = derive2 { name="XGR"; version="1.0.8"; sha256="1fy203927bai86pj80m275afvcpj78nil1yi99lf1jvmmfck7riv"; depends=[BiocGenerics dnet GenomicRanges ggplot2 igraph IRanges Matrix RCircos rtracklayer S4Vectors supraHex]; }; + XBRL = derive2 { name="XBRL"; version="0.99.18"; sha256="1bwvxqbxdf1ynz2bv27l86h05h8y19q2li2y79xk819p5nkxq341"; depends=[Rcpp]; }; + XGR = derive2 { name="XGR"; version="1.0.10"; sha256="19fgjg7cd6ax4iiwkp0r4ssr6ygfg16s3i62vr3y63an6ykmg206"; depends=[BiocGenerics dnet GenomicRanges ggplot2 igraph IRanges Matrix plot3D RCircos rtracklayer S4Vectors supraHex]; }; XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; }; XLConnect = derive2 { name="XLConnect"; version="0.2-12"; sha256="0b7nz5k3sai32fvpqzxim5ckcqrqmzd111qxm65369zvg3q281jh"; depends=[rJava XLConnectJars]; }; XLConnectJars = derive2 { name="XLConnectJars"; version="0.2-12"; sha256="1wkdrvm6h1kpkfvwf5xcx7v1j06dmp6qxgiy5ca5b0qixhqg8sv7"; depends=[rJava]; }; - XML = derive2 { name="XML"; version="3.98-1.5"; sha256="0dcdj7ryn8lm7wmv4hqhh9jxa5k97l6ad8xyvb932yfkwj1g1byy"; depends=[]; }; + XML = derive2 { name="XML"; version="3.98-1.6"; sha256="1amxx7fpik162nimrr7m5lvv6rhx9cwdyg44fxp1i5wm3y4skwnz"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XMRF = derive2 { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; @@ -3376,7 +3465,7 @@ in with self; { XRJulia = derive2 { name="XRJulia"; version="0.7"; sha256="0xcm8rkgg6l5p50x7mpzxx4ln29j8s2ngdswfmgb6vq48p7ws9gw"; depends=[XR]; }; XRPython = derive2 { name="XRPython"; version="0.7"; sha256="1vgxby01ac8s9ldfnjdyg0yj0y0341w596pp4sx5szdrl359n0fn"; depends=[rPython XR]; }; XRSCC = derive2 { name="XRSCC"; version="0.1"; sha256="0hs2whjsd02avaz79zkrd8gjw9qd7l6ysxmhx4w1r7gb1cj9rr7c"; depends=[]; }; - XiMpLe = derive2 { name="XiMpLe"; version="0.03-23"; sha256="13vsf9l3s0scqvxwxj109n6vb7rx3a2hv5lbrnjk6rxjwl8iqrly"; depends=[]; }; + XiMpLe = derive2 { name="XiMpLe"; version="0.10-1"; sha256="10163snplpw4r4902w2ws60m6wr1icnniv7y0vy7y1nq2c0i0is5"; depends=[]; }; Xmisc = derive2 { name="Xmisc"; version="0.2.1"; sha256="11gwlcyxhz1p50m68cnqrxmisdk99v8vrsbvyr7k67f0kvsznzs1"; depends=[]; }; YPmodel = derive2 { name="YPmodel"; version="1.3"; sha256="1vll33nm7xynnbq15wksk9c38jhjfd6l1bbzijn5skqc5yik1r5x"; depends=[]; }; YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgnmxnqhp8bypyy1x1p50g49fwdzl2l43il44cdyv0g"; depends=[foreach iterators]; }; @@ -3386,18 +3475,18 @@ in with self; { ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; }; ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; }; ZeBook = derive2 { name="ZeBook"; version="0.5"; sha256="1djwda6hzx6kpf4dbmw0fkfq39fqh80aa3q9c6p41qxzcpim27dw"; depends=[deSolve triangle]; }; - Zelig = derive2 { name="Zelig"; version="5.0-16"; sha256="1myj1a6y69rmjrgaax2n26qa7cprclszg1s9xdzw6s6kqaw5b969"; depends=[AER Amelia coda dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; + Zelig = derive2 { name="Zelig"; version="5.0-17"; sha256="0wn99v9l49ph1150fgd5jmjvwxingdmibrw1p4cg7cqyjwvdc7n0"; depends=[AER Amelia coda dplyr geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; }; ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-4"; sha256="02wbgzrp0jxkzz1bj5s6zk6m0w7l26jncml91mwhb2w5hzhjnbaj"; depends=[dplyr jsonlite MASS VGAM Zelig]; }; ZeligEI = derive2 { name="ZeligEI"; version="0.1-0"; sha256="1vkni4p1b0aq63l4nqg16f6a28c6ccm8nyg67z45x0yfq7xgcsi6"; depends=[dplyr ei eiPack jsonlite MASS MCMCpack Zelig]; }; ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; - aLFQ = derive2 { name="aLFQ"; version="1.3.3"; sha256="0ar325hwzmldviq7f8c478z95xlamvhwwmqs2fv6p3cx7l9k0kz6"; depends=[bio3d caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; + aLFQ = derive2 { name="aLFQ"; version="1.3.4"; sha256="1q2l5cwkcsng22nxckgc7aalvy3qhvgga5nkchfpy53sxg68awqv"; depends=[bio3d caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.0"; sha256="128f3ggnqpdv12d1f1hpkq5nb1wdwihifvvb2k2ixizmhw7vn6dy"; depends=[]; }; - aRxiv = derive2 { name="aRxiv"; version="0.5.10"; sha256="1q8nblb0kfdidcj1nwxn0fap87wpkg49z0bgmwayskwv1p860wrh"; depends=[httr XML]; }; + aRxiv = derive2 { name="aRxiv"; version="0.5.15"; sha256="1l2v66kk08awinw08xhm2xpr8d83n74fvzq4r5d2sy77vrfvgxnh"; depends=[httr XML]; }; aSPU = derive2 { name="aSPU"; version="1.46"; sha256="01xysgyc7hj0pzidbmmg1119krcz1hvx52qbybijhjr3y0hw2mfi"; depends=[fields gee MASS matrixStats mvtnorm Rcpp RcppArmadillo]; }; aTSA = derive2 { name="aTSA"; version="3.1.2"; sha256="1p3spas0sxj08hkb8p6k2fy64w86prlw1hbnrqnrklr0hnkg2g54"; depends=[]; }; aVirtualTwins = derive2 { name="aVirtualTwins"; version="1.0.0"; sha256="193289dm3nvmkx0dmclm1isz62jvvmhynnm1w1964v5nz2jc8vzd"; depends=[party randomForest rpart]; }; - abbyyR = derive2 { name="abbyyR"; version="0.5.0"; sha256="1i0mrh25mgl8aykprihsdm3zn0nsw0cr458rqnz7djff1j0mp8rg"; depends=[curl httr progress readr XML]; }; + abbyyR = derive2 { name="abbyyR"; version="0.5.1"; sha256="1s8zf18sh0s89vk3dl09fzrq50csmmfvmsanf5vfkv9n5lx6pklg"; depends=[curl httr plyr progress readr XML]; }; abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; @@ -3420,7 +3509,7 @@ in with self; { acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; acm4r = derive2 { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; }; acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; }; - acnr = derive2 { name="acnr"; version="0.2.4"; sha256="1nry927zqhb34h9lcixr344n3sxvq1142zwgj8hadlw69dv8m59y"; depends=[R_utils xtable]; }; + acnr = derive2 { name="acnr"; version="1.0.0"; sha256="087hq4i7jp67ba2finzsqjfnqbiprl33na6ryjv9zqzsdawj9cym"; depends=[]; }; acopula = derive2 { name="acopula"; version="0.9.2"; sha256="1z8bs4abbfsdxfpbczdrf1ma84bmh7akwx2ki9070zavrhbf00cf"; depends=[]; }; acp = derive2 { name="acp"; version="2.1"; sha256="0lcwbjcyyr32m6qjmjqh25qjwrbyqj1n092xhgbhxzd8fslppnmn"; depends=[quantmod tseries]; }; acrt = derive2 { name="acrt"; version="1.0.1"; sha256="0y9ndcq8ffpfrv7w9rikm4zn68jpsj6baqisq9kp2433xrwzdb6s"; depends=[Rcpp RcppEigen sandwich]; }; @@ -3440,22 +3529,22 @@ in with self; { adaptivetau = derive2 { name="adaptivetau"; version="2.2-1"; sha256="1hd2l1jv4i5mg0k0g8bbrvv43nk1zxbwh21594zayrzjyikb2593"; depends=[]; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; }; addhaz = derive2 { name="addhaz"; version="0.4"; sha256="0i3czmv538m8s3pnxrhh2a1mrdv9m3hgzjkb25p7hygwnzz54drg"; depends=[boot MASS Matrix]; }; - addhazard = derive2 { name="addhazard"; version="1.0.0"; sha256="178rn3md0pgbg9nimvypj4c3paq3bgh2h06vqj3p0n78hrwf97rl"; depends=[ahaz rootSolve survival]; }; + addhazard = derive2 { name="addhazard"; version="1.1.0"; sha256="0hk7br52wjmq605xgslv8lspr35aqpdgkiz2yljz31khy3y3vi8c"; depends=[ahaz rootSolve survival]; }; addinslist = derive2 { name="addinslist"; version="0.2"; sha256="04jqhdy0axs1a9c0cfi3pqy9hd67jqxz79a2lj209gd27qv1q22c"; depends=[curl devtools DT miniUI rappdirs rmarkdown rvest shiny shinyjs xml2]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; addreg = derive2 { name="addreg"; version="2.0"; sha256="1lc8p70di466i061jrbahq4hir4g5a8rns6044jjjg8v7b1y8alc"; depends=[combinat glm2]; }; - ade4 = derive2 { name="ade4"; version="1.7-5"; sha256="0aaqbnydm5fb37nrvqj4bx6hxax7255j426cwh2lh88nyvznbq37"; depends=[]; }; + ade4 = derive2 { name="ade4"; version="1.7-6"; sha256="0lnc37d6waajmagy8qvw206pyc4vgrpzl3hk3j9frh6wa0b8x140"; depends=[]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.2-9"; sha256="0kfnikkzhyfxskrphr65b8amjhdfq35x6dda4kivdhn7ak07s3ll"; depends=[ade4 adegraphics lattice tkrplot]; }; adegenet = derive2 { name="adegenet"; version="2.0.1"; sha256="045vc1s1n4ihw9id02c3w315pgfr004was2b0d6xb07ncipg9pby"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; }; - adegraphics = derive2 { name="adegraphics"; version="1.0-6"; sha256="0qahc6ld5nz6z81jv9yhh2cd27vh9n02swdf787fr83jgig43hja"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; + adegraphics = derive2 { name="adegraphics"; version="1.0-8"; sha256="1588n1cqgzdv4lpdgsyj47mha41n11sb36vvjdix3drncq997p9b"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitat = derive2 { name="adehabitat"; version="1.8.18"; sha256="1ng55j95hzhh853qa55mfx4xdh954ap8pqy01kyg5mgyn45i7rpa"; depends=[ade4 shapefiles sp tkrplot]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.14"; sha256="0ljmn4zbg2lb5b2ckddbxd7ibbib1pzv4iv0ld2k3bv1mvn2j565"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.12"; sha256="06lrg1s3l7slbff17my62ap7mn6h3p6s8jnn7j8mrs48nvim00z9"; depends=[ade4 adehabitatHR adehabitatMA sp]; }; adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.21"; sha256="0anyvijvlrq7c0a77dpcyq60yl1jc817rj5cb3s9iq6scicymp87"; depends=[ade4 adehabitatMA CircStats sp]; }; adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.11"; sha256="1911zdpwyr1gqyjvnn5w3blhk0mjafy0xmr3l6l749lx4cwa08d9"; depends=[filehash sp]; }; adephylo = derive2 { name="adephylo"; version="1.1-10"; sha256="1hj9nkl2z2xdb5yv9a7fb7zn9sd41lrhk2ff5z8s88xab3b2vhnc"; depends=[ade4 adegenet ape phylobase]; }; - adespatial = derive2 { name="adespatial"; version="0.0-7"; sha256="0abbds2f43dcri50crlz2fbqy444zp4bhbs81zdiby5fz64m9gr5"; depends=[ade4 adegraphics lattice MASS shiny sp spdep]; }; - adhoc = derive2 { name="adhoc"; version="1.0"; sha256="193adddarjkc2kk1xncfkm919s1lkmc1yzgyz9793p74nqmfsj0a"; depends=[ape polynom spider]; }; + adespatial = derive2 { name="adespatial"; version="0.0-8"; sha256="0h2waffkgdns5pz47zhy0wi388hrya6s01gwgwbyp7fgxj65i9ba"; depends=[ade4 adegraphics lattice MASS shiny sp spdep]; }; + adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; }; adlift = derive2 { name="adlift"; version="1.3-2"; sha256="0nzg16vhm5qg3xzczi3f6cynvp9ym2jsfrc4fdyxq7bwp9kry2i4"; depends=[EbayesThresh]; }; admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; }; @@ -3463,7 +3552,9 @@ in with self; { advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; adwave = derive2 { name="adwave"; version="1.1"; sha256="0kkwgcyxddzmrb8h1w1f4xy2cq40b86q0lxwfdhx25z3zjc4m1ni"; depends=[waveslim]; }; aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; }; - afex = derive2 { name="afex"; version="0.16-1"; sha256="0y0q7lbdraw8sn4l9qazvdawqpsyjzhfzddp9gii8w72a69s90dq"; depends=[car coin lme4 lsmeans Matrix pbkrtest reshape2 stringr]; }; + afex = derive2 { name="afex"; version="0.17-8"; sha256="1ypa6np04ls2dpbdh8p7c56zcagiwnad17akhfpdmv3qxi1lkn43"; depends=[car coin lme4 lmerTest lsmeans pbkrtest reshape2 stringr]; }; + affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; }; + afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; }; aftgee = derive2 { name="aftgee"; version="1.0-0"; sha256="0gfp05r6xvn9fcysbqyzkz916axpsc2d3lb5wmb1v92z1zw3037b"; depends=[BB geepack MASS survival]; }; agRee = derive2 { name="agRee"; version="0.5-0"; sha256="16ijw02x5qvc8rppf0yn35aljd35alnvjkjyi6725nywjib2xy5x"; depends=[coda lme4 miscF R2jags]; }; agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; }; @@ -3479,7 +3570,7 @@ in with self; { akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; }; akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; - alakazam = derive2 { name="alakazam"; version="0.2.5"; sha256="1mc6riwycizbmr7mx6r4fs513ij8g14fgs5ngg2rai7cp58796cc"; depends=[data_table dplyr ggplot2 igraph lazyeval Rcpp scales seqinr stringi]; }; + alakazam = derive2 { name="alakazam"; version="0.2.6"; sha256="18l3l2gwlsws4qc8kkg6828nvxyipqqan5y1xixh6i9xjxwhr5w4"; depends=[dplyr ggplot2 igraph lazyeval Rcpp readr scales seqinr stringi]; }; ald = derive2 { name="ald"; version="1.1"; sha256="1ar9mrvfw2jz4js9prbp9icsync7fw6wpirpximsr4cy1klqjfpn"; depends=[]; }; algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; }; algstat = derive2 { name="algstat"; version="0.0.2"; sha256="1ssdrrwnxrhx3syndqxqcaldlbnjamk3x2yiq7jgxy0qsiadmqsi"; depends=[mpoly Rcpp reshape2 stringr]; }; @@ -3490,13 +3581,13 @@ in with self; { allelematch = derive2 { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; }; allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; - alm = derive2 { name="alm"; version="0.4.0"; sha256="125cl5b1sps33ipsh2pygrw79mhin1qj374lq56ny7c9rp4n9w7p"; depends=[ggplot2 httr jsonlite lubridate plyr reshape reshape2 stringr]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.2"; sha256="1apbirffqipdj618qgqh7vjlhg9fp6ncxb0yk4dclpn7g645863x"; depends=[geometry rgl]; }; alr3 = derive2 { name="alr3"; version="2.0.5"; sha256="0zrrsv2kjq3cky3bhk6gp32p1qpr1i5k2lx7c1w08bql0nb1x740"; depends=[car]; }; alr4 = derive2 { name="alr4"; version="1.0.5"; sha256="0m8jgc4mfni17psf8m0avf0m364vcq5k3c9x807p98ch2z5nsygv"; depends=[car effects]; }; + alterryx = derive2 { name="alterryx"; version="0.2.0"; sha256="042cbxw0s43ffmicf25mvg0na1l0x8qbf6rl63ia44r9l3v8jcyd"; depends=[base64enc digest httr jsonlite]; }; altmeta = derive2 { name="altmeta"; version="2.2"; sha256="1k3p06v8ccj0dbjfpl4nw6579bwcy4j925rk15v55khqmrlx780l"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-14"; sha256="1dz37z9v4zvyvqrs4xvpfv468jwvpxav60qn2w0049bw8llj6xdl"; depends=[]; }; ameco = derive2 { name="ameco"; version="0.2.6"; sha256="1jbkw79kv6b83kv1s2id2xrljzbz25bc7yqld3p8dfpngcpmgvq8"; depends=[]; }; @@ -3510,7 +3601,6 @@ in with self; { analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; analytics = derive2 { name="analytics"; version="1.0"; sha256="1f5jmc0j3r8y401d9j0acl83d3mp63a2n4hsmxznph2vva9y9kxc"; depends=[cluster MASS powerplus]; }; analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; - anametrix = derive2 { name="anametrix"; version="2.0.0"; sha256="1dnmz7mpm1rsw61a39pkby0jsiprwk0g74h09g3r4vbn4k93r375"; depends=[dplyr plyr RCurl XML]; }; anapuce = derive2 { name="anapuce"; version="2.2"; sha256="0qs27as628090k3sq5b14l90g7qdp23d0jz5lb1wxsgi3ji0f7qj"; depends=[]; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; @@ -3519,13 +3609,16 @@ in with self; { aniDom = derive2 { name="aniDom"; version="0.1"; sha256="0nffgszifar9da8310ymhfns19xnnnjh49rlvaxxk711h0a72fc5"; depends=[rptR]; }; anim_plots = derive2 { name="anim.plots"; version="0.1"; sha256="0qjwmxpkvjf27parh1fvhrkiczm4zlv9c034dp04yysbdz65r1by"; depends=[animation]; }; animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; }; - animation = derive2 { name="animation"; version="2.4"; sha256="092xqnnr16rdf9yx68l6qgq4gg2ghdk31s4liycx71kvn6kr3vss"; depends=[]; }; + animation = derive2 { name="animation"; version="2.5"; sha256="0pxmihfr3q1hh4cdnzf7wbzqak5spa3kv4p1wl89giqqngqzwcmj"; depends=[]; }; anocva = derive2 { name="anocva"; version="0.1.0"; sha256="1kira0bs3yjmsq7zrd4y5zzl948pz3rgbfsvkzidi2n6vvcl5344"; depends=[cluster]; }; anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; }; + anomalyDetection = derive2 { name="anomalyDetection"; version="0.1.1"; sha256="0446qdh8abl02f7s2rli5qh7vl1y075nwirmxhc2i59jl0jhx44f"; depends=[caret dplyr gmp gplots magrittr MASS matrixStats plyr purrr qdapTools RColorBrewer tibble tidyverse]; }; anominate = derive2 { name="anominate"; version="0.5"; sha256="0qhq3ngxi1d3yln6bafg3c36a7whnznnww0101da2y0i6dw79lg5"; depends=[coda MCMCpack oc pscl wnominate]; }; anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; }; + antaresProcessing = derive2 { name="antaresProcessing"; version="0.10.0"; sha256="036qjsppygszd6v8xxf94a0p28nv78zxlq5wqxrwamhahc7mafin"; depends=[antaresRead data_table]; }; + antaresRead = derive2 { name="antaresRead"; version="1.1.1"; sha256="0bpz7h4m0q0f7mrhgf16rag7whg6s924ylkg2a9fczgc1dam197p"; depends=[data_table lubridate plyr]; }; antitrust = derive2 { name="antitrust"; version="0.95.1"; sha256="14qz4c78lyfhgh3xyybn2sb8kl4rjzvb3dwrwxl9dzjmk5k6ab7i"; depends=[BB evd ggplot2 MASS numDeriv]; }; - anytime = derive2 { name="anytime"; version="0.2.1"; sha256="0grz40c4wv8z174b7avrj2fcfbr3clmvbrqjgmvi6x3ww6sqfppm"; depends=[BH Rcpp]; }; + anytime = derive2 { name="anytime"; version="0.2.2"; sha256="01m5cjk119k2v9hsmcgh9pk6sw52xx0nl4xrap5sfzvzjvy5brgm"; depends=[BH Rcpp]; }; aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; }; aods3 = derive2 { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; }; aoos = derive2 { name="aoos"; version="0.4.0"; sha256="16kkgbk54fqn18pm2psw6v1g71vl8xrc9mk0na5zh83ag69cjqcz"; depends=[magrittr roxygen2]; }; @@ -3533,8 +3626,8 @@ in with self; { aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; }; apTreeshape = derive2 { name="apTreeshape"; version="1.4-5"; sha256="0mvnjchhfbpbnrgnplb6qxa7r2kkvw29gqiprwggkf553wi6zl48"; depends=[ape quantreg]; }; apa = derive2 { name="apa"; version="0.2.0"; sha256="1f9c8m5z8j7mbmbh61vcs680ya1zq5spwqs90zhajaw5fhvlg8km"; depends=[dplyr magrittr purrr rmarkdown stringr]; }; - apaStyle = derive2 { name="apaStyle"; version="0.4"; sha256="0ckxp37p1aizvs5sql54xvpimhq4m4944x18ihqffhpzb3dxw1ba"; depends=[ReporteRs]; }; - apaTables = derive2 { name="apaTables"; version="1.0.4"; sha256="1ncs79n0jvr6m9gmaazi5d9g2c6c6hf8alrb45z8fy8sj9bj51hn"; depends=[car MBESS rockchalk]; }; + apaStyle = derive2 { name="apaStyle"; version="0.5"; sha256="1x3kgyxhgbx3r7wi759j75wh811jcm6z559mrk4zm4p99vqz10bl"; depends=[ReporteRs]; }; + apaTables = derive2 { name="apaTables"; version="1.5.0"; sha256="18gd06syl6sylrbrdmp5mlw9q4whnxlv0w7l0yll5jk1bn440fw8"; depends=[broom car dplyr MBESS rockchalk tidyr]; }; apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; }; apcluster = derive2 { name="apcluster"; version="1.4.3"; sha256="1pqcxh83189388qqc6cngqnsygvpx4kjy0j2r8ykcgxvdwi8r58m"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; @@ -3553,6 +3646,7 @@ in with self; { apsimr = derive2 { name="apsimr"; version="1.2"; sha256="14vhsm6am2c2q2sgabnhxr0lgldifss0anjpisrhjqk04njllviy"; depends=[ggplot2 lubridate MASS mgcv reshape2 XML]; }; apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; }; + aptg = derive2 { name="aptg"; version="0.1.0"; sha256="06z8041h1k9v0ymd7azn11xzhqxb8lda4r7nyg51h8z3i8mpq1ba"; depends=[ape brranching phytools taxize xml2]; }; aqfig = derive2 { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; }; aqp = derive2 { name="aqp"; version="1.10"; sha256="1c8vj10mygsrlixx4pwfs1xk69bvhdi37hl4p1v6g3nwvsr8f7ac"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; }; aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; }; @@ -3570,20 +3664,20 @@ in with self; { argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; }; arm = derive2 { name="arm"; version="1.9-3"; sha256="00773z8ai07s9wa2annzjqrxml3z13fh9zqls0z1n7s3h8fwrvqw"; depends=[abind coda lme4 MASS Matrix nlme]; }; arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; }; - aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.0.0"; sha256="1i6swcg13sajsr2r49ga3qnkiza87ql49v96mjwaj0s5x23szknp"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; + aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.1.0"; sha256="1slbmqr0qd8r9lrms7b86fhvn612g4yjbm604zahjr335q6d7h03"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; }; aroma_apd = derive2 { name="aroma.apd"; version="0.6.0"; sha256="1l9p5qww71h6wlg2z15wirsfz2i7hmf637l17zaf3n7fp9s3flc7"; depends=[R_huge R_methodsS3 R_oo R_utils]; }; aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; }; - aroma_core = derive2 { name="aroma.core"; version="3.0.0"; sha256="0y0hydf2b2fp2dn2fqxbdqsf2r04rk7y1s2wwm1dg3p6nzsgnypk"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; + aroma_core = derive2 { name="aroma.core"; version="3.1.0"; sha256="1hynag8jgjbxhnihpvv3zy3z5wdfg52ca9mly9bc649yh3gpmmxk"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; }; arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; }; ars = derive2 { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; }; - arsenal = derive2 { name="arsenal"; version="0.2.0"; sha256="1rwzgza4dy1xyi0p157yfhwr1bwwk6bxbkb31752av34nvddl4cm"; depends=[broom stringr]; }; + arsenal = derive2 { name="arsenal"; version="0.3.0"; sha256="19m6zblghdsx0phm82bb6dbjba260pa495xxwssypciyf7lrj3mc"; depends=[broom stringr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; - arules = derive2 { name="arules"; version="1.5-0"; sha256="0x75ggaaqnhikkpk2rhwnzbg1lakch7kykw6q9iw6wzvq8qbmnmi"; depends=[Matrix]; }; - arulesCBA = derive2 { name="arulesCBA"; version="1.0.2"; sha256="0sckrw702ah5dphbixfinnb0g9sca7r12k91c564aigfj3yspc1s"; depends=[arules caret Matrix testthat]; }; + arules = derive2 { name="arules"; version="1.5-2"; sha256="0i5cj2v86nmrqf4lr0jisfpvscjz6pp6d8kzaj1ry09d4j3z2siz"; depends=[Matrix]; }; + arulesCBA = derive2 { name="arulesCBA"; version="1.1.1"; sha256="185zj7yajziadb8xhyk376gxsa4xn03jjd3kp1lqn2ck6v0cvsnj"; depends=[arules caret Matrix testthat]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; }; - arulesSequences = derive2 { name="arulesSequences"; version="0.2-17"; sha256="1ch2k70k713h5vr3g7ddzv1bsgpyiaf6i6jjf7jmvcc4m6pcg2s1"; depends=[arules]; }; - arulesViz = derive2 { name="arulesViz"; version="1.2-0"; sha256="1vdcrqw5m4ca379y4xapz8azifnv608lna0mx3kl7zi6iy8ysn61"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd]; }; + arulesSequences = derive2 { name="arulesSequences"; version="0.2-18"; sha256="1vpsq10l6zg16b03akxf57fyd8qhfcj5f3az761fmws0n6bc0vm3"; depends=[arules]; }; + arulesViz = derive2 { name="arulesViz"; version="1.2-1"; sha256="0x4hg5nhkga6zikl5ah5g0vvqfn0xw9277c9q4hfxp4x2hzdbsyy"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd]; }; as_color = derive2 { name="as.color"; version="0.1"; sha256="1y5qpm0pabfk5qvgx6s2vqqxfhp1x99g7dva24zay34nvf4bxrzn"; depends=[]; }; asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; @@ -3593,14 +3687,14 @@ in with self; { asdreader = derive2 { name="asdreader"; version="0.1-2"; sha256="0lfm0c5nzm276zaaxxwkpkqca5xg9r6ysfpgl6wvdbbvs9s83x4a"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; ashr = derive2 { name="ashr"; version="2.0.5"; sha256="0blr19ipcanwjxizilkd8hb37dlhb6idjcw2lf0ll8pkd2l68f5z"; depends=[assertthat doParallel etrunct foreach pscl Rcpp SQUAREM truncnorm]; }; - asht = derive2 { name="asht"; version="0.8"; sha256="0j8fabrdpnp7y8pa7crjx976hngyvm2zy0chdp4p44pgcs4dn071"; depends=[bpcp coin exact2x2 exactci ssanv]; }; + asht = derive2 { name="asht"; version="0.9"; sha256="1sphcvwb4nqmbr3lppripk3wz8kakbi7d1kwkq3ji3yn5yvd7384"; depends=[bpcp coin exact2x2 exactci ssanv]; }; aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; asnipe = derive2 { name="asnipe"; version="1.1.3"; sha256="1kg58k52wiwcqgxgzsvrcn10j5gcl395mw4vky4k85kmcw1h63ks"; depends=[MASS Matrix]; }; aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; }; aspect = derive2 { name="aspect"; version="1.0-4"; sha256="1kxddm8v1y0v2r7lg24r1wpzk7lqzxlrpzq5xb9kn343g53lny6i"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; asremlPlus = derive2 { name="asremlPlus"; version="2.0-12"; sha256="119r7wwrz11j85idq21xdp2wq7l2jly73q3179d3bsywbmx5sr17"; depends=[dae ggplot2]; }; - assertable = derive2 { name="assertable"; version="0.2.1"; sha256="0q204l1wlnwvlf72lzaqfxf5x88h53c8zva5vmiq0c825h2v67an"; depends=[data_table]; }; + assertable = derive2 { name="assertable"; version="0.2.2"; sha256="0443kjr7f7icz36a2aigldg3k2iwkhn2pkvvbv8sa9d1wdjy7kjn"; depends=[data_table]; }; assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; }; assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; }; assertive_code = derive2 { name="assertive.code"; version="0.0-1"; sha256="0drdrc9ljznkz52lvpwx0mvrghl0wf6dffzc3msz8lnvraxmanyw"; depends=[assertive_base assertive_properties assertive_types]; }; @@ -3617,16 +3711,16 @@ in with self; { assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; assertive_types = derive2 { name="assertive.types"; version="0.0-3"; sha256="0zxq1jfrzgw95ll7alvm0xnk7aihjdksngq4ya2whyvfjbmv4vdb"; depends=[assertive_base assertive_properties codetools]; }; - assertr = derive2 { name="assertr"; version="1.0.2"; sha256="1l0j0jxg5dr6c1hkigwpmr04df30s0cqpy64brrkl8jkwf4c1ji1"; depends=[dplyr lazyeval MASS]; }; - assertthat = derive2 { name="assertthat"; version="0.1"; sha256="0dwsqajyglfscqilj843qfqn1ndbqpswa7b4l1d633qjk9d68qqk"; depends=[]; }; + assertr = derive2 { name="assertr"; version="2.0.2"; sha256="19di52iwsdxzs08pm49smiwhld04528vysm1fyfdvl51zl04hwgd"; depends=[dplyr lazyeval MASS]; }; + assertthat = derive2 { name="assertthat"; version="0.2.0"; sha256="1wp5znk3xy338x6hknppk702jn596yr735d9i7c3wabm3sdzfgnp"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.1.1"; sha256="11786lxnrwi4gb1nddk8bkz7h9wyjiav8gajss43cybhiwpcy0p1"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assist = derive2 { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; - aster = derive2 { name="aster"; version="0.8-31"; sha256="1rn9hp7dg81rd14ckmfz23aav3ywm7i3w46jx66kqbrfs7kdrslq"; depends=[trust]; }; - aster2 = derive2 { name="aster2"; version="0.2-1"; sha256="1gr9hx0mhyan0jy7wsl4ccsx9ahlvhfiq0j1xnffa4m3hzazisn5"; depends=[]; }; + aster = derive2 { name="aster"; version="0.9.1"; sha256="0z976r9ljawfdzvmsb1arpllgs3l2r5wimdvbpcw08r1qdyyzwj8"; depends=[trust]; }; + aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; - astrochron = derive2 { name="astrochron"; version="0.6.5"; sha256="141nw03ggxc4p297g799kvk15sa6n5apf733kg7w9bbfgqwm4aa5"; depends=[fields IDPmisc multitaper]; }; + astrochron = derive2 { name="astrochron"; version="0.6.6"; sha256="1ycpjxdcrvbh26ykhy5srwmd9pm88l4y550887lray4jqa4gr9f1"; depends=[fields IDPmisc multitaper]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; astsa = derive2 { name="astsa"; version="1.7"; sha256="1rzl1ayzv8lnn2009j4v667pp8sxdbn7qbqqyjpq00c75f4wss6x"; depends=[MASS]; }; @@ -3645,14 +3739,14 @@ in with self; { audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; }; autoSEM = derive2 { name="autoSEM"; version="0.1.0"; sha256="0s58dnpr7zyclk5vwaf7a2id6paqsnb224f0gpmj2nms4klsw323"; depends=[GA lavaan snowfall]; }; autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; }; - autoimage = derive2 { name="autoimage"; version="1.2"; sha256="1dzxdz7wpmhl5p1jcab2i7k9fd7idm3dflsyj8clpp203wr4kz56"; depends=[fields ggplot2 mapproj maps viridis]; }; + autoimage = derive2 { name="autoimage"; version="1.3"; sha256="109n23j9wx0nbbawpr28l3xsxhc3pq21b0pg6h2symgjahvw9b5n"; depends=[fields ggplot2 mapproj maps viridisLite]; }; automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; }; automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; }; automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; }; autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; }; autothresholdr = derive2 { name="autothresholdr"; version="0.2.0"; sha256="18a41nrh5ll1i4gqh58iwbyg8wl9w4969mx24knldaf6c303c8ss"; depends=[EBImage magrittr rJava RSAGA]; }; autovarCore = derive2 { name="autovarCore"; version="1.0-0"; sha256="08h51bh1m3d47nprd5z7v3k3lkrixbxwinr73zd5442wskf4x82v"; depends=[Amelia jsonlite Rcpp urca vars]; }; - averisk = derive2 { name="averisk"; version="1.0.2"; sha256="0k7f0l7bx76q5x8cam2z0q6akc9a6zj0pj0644v8gbr40n2y5snz"; depends=[MASS]; }; + averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; }; aws_alexa = derive2 { name="aws.alexa"; version="0.1.2"; sha256="0ddgsk8bj51dz43flkxha73m7cmqbi63bp4ascwd3yp8645jjx6h"; depends=[aws_signature httr plyr XML]; }; aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.1"; sha256="0xzilzvrvzhna1iyhjb5r9k1wbd7545sc1yjcf69r35585gnm8rr"; depends=[curl jsonlite]; }; @@ -3667,10 +3761,10 @@ in with self; { b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bReeze = derive2 { name="bReeze"; version="0.4-0"; sha256="1znhmb2inbfv574adhwjwk3qf9kikrxrly4n6sfyim1z6sagnj0z"; depends=[]; }; - bWGR = derive2 { name="bWGR"; version="1.3.2"; sha256="0c0fj8w6gzkcbpfw68hvdp3ihjdwpnplqgnxnj7zp5cxac996vs8"; depends=[Rcpp]; }; + bWGR = derive2 { name="bWGR"; version="1.4"; sha256="0sj6fa4ajp7a7k8z7znqn3wkibvxmdlnj5xf1n0zmsvncmgqhkwh"; depends=[Rcpp]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; - babynames = derive2 { name="babynames"; version="0.2.1"; sha256="1knzr0pn77k8krinp8pmlzf07v8597g2iby4mayig91cna1m0psx"; depends=[]; }; + babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; }; backShift = derive2 { name="backShift"; version="0.1.4.1"; sha256="1vixr9l9zqaqy0knahijp6y9vzix4m8bz3abiprk3v2pjzg5nrvm"; depends=[clue ggplot2 igraph jointDiag MASS matrixcalc mvnmle reshape2]; }; backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; }; backpipe = derive2 { name="backpipe"; version="0.1.8.1"; sha256="1nid5rbgwiq8axkrl2gwl4vr5bjq5k5nrhq7macddvijcn3r2dz8"; depends=[]; }; @@ -3679,10 +3773,11 @@ in with self; { backtestGraphics = derive2 { name="backtestGraphics"; version="0.1.6"; sha256="14l9dbkbcx4kl45kpjbq4ihzf47j859khhd1db40vnp8x57g9xcx"; depends=[dplyr dygraphs scales shiny xts]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; badgecreatr = derive2 { name="badgecreatr"; version="0.1.0"; sha256="070zb5jw817s9ykqc3dvzjqk48612gydkdc31svc0ji01s1y1545"; depends=[stringr]; }; + badger = derive2 { name="badger"; version="0.0.2"; sha256="15qnb0a6rqsf1dbb1cf9ag2z5f4zhf8b8psxbsdhh42qrg8g3mma"; depends=[dlstats rvcheck]; }; bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; }; baitmet = derive2 { name="baitmet"; version="1.0.0"; sha256="0qrg3a5h5c0w8awnpnn1bfvgqqm4bylkwgjwq3l58xkfji6l0d08"; depends=[erah HiClimR osd Rcpp signal XML]; }; bamdit = derive2 { name="bamdit"; version="3.0.0"; sha256="0hph6z3id4japk9ljgmn9ygbbswlj50viqllww4qsi2a5wxjls3f"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="0.1-1"; sha256="1r34qgy0w0hx2q9bfc7bxzyjgnqn3wfb0r0ij3rkvdi5rzcrsw7z"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp spam survival]; }; + bamlss = derive2 { name="bamlss"; version="0.1-2"; sha256="1d5pinyq16y0ljjgf23mpabzpsx4n2vh91c89qmzclcw7ns0l7xw"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp spam survival]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="0.1.0"; sha256="0ycx771g9a73w0sx8zzix8kswwbjagzhbyvaq7l5r8a9ayfli8ic"; depends=[]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; @@ -3693,7 +3788,7 @@ in with self; { base64 = derive2 { name="base64"; version="2.0"; sha256="1labh0ycdm2xcjssj8bhnyjvbk44mcdsi0rb2p8rfqa428mrq9cf"; depends=[openssl]; }; base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.1"; sha256="1f0asnf5ri55q6mhjkv7lfhr2hncs65vrykmr80r5sxsha6bqndz"; depends=[backports]; }; - basefun = derive2 { name="basefun"; version="0.0-36"; sha256="1y2pvs5gffifvchyqahsnqg6zw00yargajvryrb96labh9c5dqyl"; depends=[Matrix orthopolynom polynom variables]; }; + basefun = derive2 { name="basefun"; version="0.0-37"; sha256="0v1v4a1kvzyzw7zrfvnbiqdg6jwa0z58w64gmzrb0a0aygnwk8fp"; depends=[Matrix orthopolynom polynom variables]; }; baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; }; basicspace = derive2 { name="basicspace"; version="0.18"; sha256="1jnylqaxgmdj9ld9q7hkmi4af8yzswaqgykbw96qzzxp9cvini1y"; depends=[]; }; bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; }; @@ -3704,17 +3799,19 @@ in with self; { batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; }; batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; }; bayesAB = derive2 { name="bayesAB"; version="0.7.0"; sha256="1visjwxf7jc9z1m99dnplg01sbbx4w4cr6ykh3n1nzh5r9xinimm"; depends=[devtools ggplot2 plumber Rcpp reshape2]; }; + bayesCL = derive2 { name="bayesCL"; version="0.0.1"; sha256="1l278lxidn16nma2ny14wjajcqyzbr6j5xl2lj08cic26c7hvjbm"; depends=[]; }; + bayesDP = derive2 { name="bayesDP"; version="1.0.2"; sha256="1c71p20acvmbwqm1a67f9d89g0fgmw9zlg1w1sic3adz3gwcsifx"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; }; bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; }; bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; }; bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; }; - bayesImageS = derive2 { name="bayesImageS"; version="0.3-3"; sha256="08d7ffv1nr1q7syf8fxp40fczyl5i8xd2cyv3piqn40l7dlpckhj"; depends=[Rcpp RcppArmadillo]; }; + bayesImageS = derive2 { name="bayesImageS"; version="0.4-0"; sha256="1z8jvjqz56xlj5x2ilp9m93v74qsqd7xvdld5pk7y80pxnfd6wpy"; depends=[Rcpp RcppArmadillo]; }; bayesLife = derive2 { name="bayesLife"; version="3.0-4"; sha256="1n15df1rsyad3ij7l6ib79q7yflgwaykxq8msbkaq4ly8fvyy72x"; depends=[bayesTFR car coda hett wpp2015]; }; bayesMCClust = derive2 { name="bayesMCClust"; version="1.0"; sha256="14cyvcyx3nmkbvsy7n4xjp7zvcgdhy013dv9d72y8j5dvlv82pb4"; depends=[bayesm boa e1071 gplots gtools MASS mnormt xtable]; }; bayesPop = derive2 { name="bayesPop"; version="6.0-4"; sha256="16i9h7zvym1mj1al3wzima3y4igxhwax03npgnypaxahi1sbiwha"; depends=[abind bayesLife bayesTFR fields googleVis plyr rworldmap wpp2012 wpp2015]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; bayesSurv = derive2 { name="bayesSurv"; version="2.6"; sha256="0lam6w0niy30wgzbc3zrwbfz291whig20prjzdpcpv91syrnw687"; depends=[coda smoothSurv survival]; }; - bayesTFR = derive2 { name="bayesTFR"; version="5.0-5"; sha256="091yzazvj66g6l9997qgnybbhvidfd9gr1wj15b7r3ji0cigywkm"; depends=[coda MASS mvtnorm wpp2015]; }; + bayesTFR = derive2 { name="bayesTFR"; version="6.0-0"; sha256="0dyjq7s2gvwwz0yylz5g0csjnhdfbbii1sd4606r2yphfwb9v0x8"; depends=[coda MASS mvtnorm wpp2015]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.1"; sha256="0gd3in9z8kx3d29dvyd8blmhlc7wxxl5b2hxnrrq0w13jcnsn57w"; depends=[HDInterval plyr]; }; bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; @@ -3723,7 +3820,7 @@ in with self; { bayesm = derive2 { name="bayesm"; version="3.0-2"; sha256="014l14k8fraxjqfch2s6ydgp1mcljvj4cgrznjyz2l35fwj3rcf3"; depends=[Rcpp RcppArmadillo]; }; bayesmeta = derive2 { name="bayesmeta"; version="1.4"; sha256="0ks0g7jdr2jqm7nwbm0p34nk8hm9746nldf0kyzgkl7vb29jb9f1"; depends=[forestplot]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; }; - bayesplot = derive2 { name="bayesplot"; version="1.1.0"; sha256="0c71ma6v6b44j39x7z44wyashnpd8xdwj3hrvvjafx473pgmbx4s"; depends=[dplyr ggplot2 reshape2]; }; + bayesplot = derive2 { name="bayesplot"; version="1.2.0"; sha256="10xk90vh9p9ifnkffh4l7icq7072zmn3cf5gdr8j4982pbb3d4w0"; depends=[dplyr ggplot2 reshape2]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; bayesreg = derive2 { name="bayesreg"; version="1.0"; sha256="0crld04cxxqw0xq2d4rdv040iq7vchwjbzacj0z8jv245hwgr9qy"; depends=[BayesLogit]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; @@ -3731,7 +3828,7 @@ in with self; { bazar = derive2 { name="bazar"; version="0.1.4"; sha256="1dmxii9y61hpi7vpdm7vqdrc9lcsdazi3634k9yrdjcf6xzh4byd"; depends=[kimisc]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; - bbmle = derive2 { name="bbmle"; version="1.0.18"; sha256="0gcj16msny7ni60r000mv2knb4gxbb470qn16pc6vzdhrl6c6dxj"; depends=[lattice MASS numDeriv]; }; + bbmle = derive2 { name="bbmle"; version="1.0.19"; sha256="014h6mw16gv4acs2p78dy7lla7s428n633aybsb1mbi6250dg0p8"; depends=[lattice MASS numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; }; bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-1"; sha256="0gikx66lwirvh037za1ipwvw6kj7n8r31zdsbsasrvksg4r3k58m"; depends=[boot nnet Rcpp RcppArmadillo rgl]; }; @@ -3742,6 +3839,7 @@ in with self; { bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; bcrm = derive2 { name="bcrm"; version="0.4.6"; sha256="1nqa7kd83h8gh6bb5lbd17m1hgv8vjlbbq8w0i1fgmadz7y5rpji"; depends=[ggplot2 mvtnorm]; }; bcrypt = derive2 { name="bcrypt"; version="0.2"; sha256="0f4sw1w2k1237wipfva3k9w2a678pvfz0k86jd7djslhyimb6jrq"; depends=[openssl]; }; + bcs = derive2 { name="bcs"; version="1.0.0"; sha256="0wv7kfcr6i36ik8v3prwp4mrwg1x6vf5nmybq9a57fz66pf1ff1x"; depends=[fda Rcpp RcppArmadillo wmtsa]; }; bcv = derive2 { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; }; bda = derive2 { name="bda"; version="5.1.6"; sha256="0rpxvmjbqiph8hpzsvlj8q6h70jsc9771fiq7l3lmkz69jn1gf4q"; depends=[]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; @@ -3751,7 +3849,7 @@ in with self; { bdrift = derive2 { name="bdrift"; version="1.2.2"; sha256="03vwiyvxv174l0sy76gp2x8lwjf3s45zxzwrlbn97hg9c3j9adjm"; depends=[Quandl quantmod scales xts zoo]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-2"; sha256="16qhfwk0r1snm9hg32qwz7hizkpwc32m723hjm23m2026gvz2nwy"; depends=[]; }; - bdvis = derive2 { name="bdvis"; version="0.2.9"; sha256="0qgxi9i2vblc219d0gn81mkqnpn9i6c84fczc5lrbcf9a2x0q88g"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr sqldf taxize treemap]; }; + bdvis = derive2 { name="bdvis"; version="0.2.15"; sha256="0qmzy41bbv6vin0ah1skqb1sp5z66pgbi8h81cfmmffsypzwawx5"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr sqldf taxize treemap]; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; bea_R = derive2 { name="bea.R"; version="1.0.1"; sha256="15ihbw3chmwnlyh68dwdzzzbvzj909jz8d1m4gnmi71s4v5mc1v8"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; @@ -3766,11 +3864,11 @@ in with self; { benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; }; benchmarkme = derive2 { name="benchmarkme"; version="0.4.0"; sha256="1x17nhpxvz51mllml8mhn9lzx5in1mmfi1f6arqw2xhxd6rkbjdz"; depends=[benchmarkmeData httr Matrix]; }; benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.4.0"; sha256="06nphyma03pmjynmck9mcnws6sjp32894wv8pvh9xa14ifxqf48f"; depends=[]; }; - benchr = derive2 { name="benchr"; version="0.1.0"; sha256="1a47ambg70hl4jsr6v96z29rm3ipg1psqma792k5l2ws8422gxgw"; depends=[Rcpp]; }; - benford_analysis = derive2 { name="benford.analysis"; version="0.1.4"; sha256="0kz55548f141ic4bvg6wbb0dqrkdnggpdsalf7pra7dj8x67wbhm"; depends=[data_table]; }; + benchr = derive2 { name="benchr"; version="0.2.0"; sha256="042ijh6726s116z7w2cky5l105p3dj7xsfmlwkigsbrmya8x5d37"; depends=[Rcpp RcppProgress]; }; + benford_analysis = derive2 { name="benford.analysis"; version="0.1.4.1"; sha256="0acbjjavbvsaigy78b5k9qhj8011751116lqln8j0v8w1k3vqwqm"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.14.0"; sha256="16332811v3ivddklif5n3mwjp02c2hzysbj4vc6z6v6sxd1jvjq2"; depends=[abind]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.15.0"; sha256="006q9p97mz7mc6z892680a49s2j4jcykjgkddgb69jpbj5shx1pg"; depends=[abind]; }; bestglm = derive2 { name="bestglm"; version="0.36"; sha256="1das1qnczgw46hrjplfhw00wqjd8gxqsdr9s4zmc3k8qlzhb3ych"; depends=[glmnet grpreg lattice leaps]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; @@ -3781,13 +3879,12 @@ in with self; { betas = derive2 { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; }; betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; }; bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; }; - beyondWhittle = derive2 { name="beyondWhittle"; version="0.17"; sha256="1lmrsc85v3gjafk2pb013jr5v01jlf7y7csbzck48rmlgv6bqf89"; depends=[ltsa Rcpp]; }; + beyondWhittle = derive2 { name="beyondWhittle"; version="0.18.1"; sha256="0aph1sshnxk7aajnm871zw9fadxbhv8l93kbydzh69b8kiz6wi6x"; depends=[ltsa Rcpp]; }; bezier = derive2 { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; }; bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; }; bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; }; bfork = derive2 { name="bfork"; version="0.1.2"; sha256="0gcmvxs57gkyvsx67dyg2jqs9wr3clndmmfqq5rvi5ys31g6krb8"; depends=[]; }; - bfp = derive2 { name="bfp"; version="0.0-31"; sha256="01b6471a0vwfickj5sl4dak1y4bqysanmzlxs867j7dcsh6nqha7"; depends=[Rcpp]; }; - bgeva = derive2 { name="bgeva"; version="0.3"; sha256="0isijl43kmg4x7mdnvz0lrxr87f68dl4jx7gmlg70m8r6kk8cfqn"; depends=[magic mgcv trust]; }; + bfp = derive2 { name="bfp"; version="0.0-35"; sha256="13jfbzijg087sva45bxzdnpz16l51mbszzh443nad23lym0w4bfg"; depends=[Rcpp]; }; bglm = derive2 { name="bglm"; version="1.0"; sha256="1ln5clsfhpzjkm6cjil0lfqg687b0xxbvw1hcvangc0c0s314mrz"; depends=[mvtnorm]; }; bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; }; bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; }; @@ -3795,14 +3892,15 @@ in with self; { bhm = derive2 { name="bhm"; version="1.1"; sha256="00xnqppq95qvdbiklsz4af4f0f4p61b7c7v0l1k1isxqr3mgcgia"; depends=[coda survival]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="0.1.1"; sha256="0jhl1cbd04dgr9y9qw3s1wa6cnzvgid3668kv0mmn721i30hk5q3"; depends=[dplyr plyr stringr]; }; - bibliometrix = derive2 { name="bibliometrix"; version="1.4"; sha256="14p5rss6maqy4d63w537lnslgdadvybg5vkscj38db16vqasvhcf"; depends=[dplyr factoextra FactoMineR ggplot2 igraph Matrix SnowballC stringr]; }; + bibliometrix = derive2 { name="bibliometrix"; version="1.5"; sha256="08wn1wykxlry3y1wlhja75g6kva2gjrvslphilx6qabxq54bal0m"; depends=[dplyr factoextra FactoMineR ggplot2 igraph Matrix RColorBrewer rscopus SnowballC stringr]; }; bibliospec = derive2 { name="bibliospec"; version="0.0.4"; sha256="0abrbaw2knnlh8g5r4c2i6cc7a6ilfxry8zhscrx0x58irmp790b"; depends=[DBI RSQLite]; }; bibtex = derive2 { name="bibtex"; version="0.4.0"; sha256="0sy1czwjff3kdfnmlkp036qlnw8dzdl5al7izy1cc0535hsijv0d"; depends=[]; }; biclust = derive2 { name="biclust"; version="1.2.0"; sha256="03vkj7zp3dl4zbv2gzv9pahcd1018lbv4ixghvv1g0fsbndrybdg"; depends=[colorspace flexclust lattice MASS]; }; bifactorial = derive2 { name="bifactorial"; version="1.4.7"; sha256="187zlsqph7m63wf6wajvs6a4a08aax9hiqssgvma6cpkpisfiz4k"; depends=[lattice multcomp mvtnorm Rcpp]; }; bife = derive2 { name="bife"; version="0.2"; sha256="00hfnd916aya48dn9n27igljav5v9xmac3bj5mhv9vggyccrim48"; depends=[Formula Rcpp RcppArmadillo]; }; - bigFastlm = derive2 { name="bigFastlm"; version="0.0.1"; sha256="00i5hq3i837hj5kszm9rqax86g273aklxwikrabzwnyai9ziz8qa"; depends=[BH bigmemory Rcpp RcppEigen]; }; + bigFastlm = derive2 { name="bigFastlm"; version="0.0.2"; sha256="012vxy5mpknc3998h382qdzgrxnyfpyddy003zjp3v42clim5y64"; depends=[BH bigmemory Rcpp RcppEigen]; }; bigGP = derive2 { name="bigGP"; version="0.1-6"; sha256="0fwm06rzx1qbh16ii93x26i4v4yb50jk67k3qmzyr3gr4z9b9xhg"; depends=[Rmpi]; }; + bigKRLS = derive2 { name="bigKRLS"; version="1.5.2"; sha256="1hv8gxxdck2vnn292gq1dmhnn8q570jjx50z8bl5xyjqddk64rp0"; depends=[BH bigalgebra biganalytics bigmemory ggplot2 Rcpp RcppArmadillo shiny]; }; bigQueryR = derive2 { name="bigQueryR"; version="0.2.0"; sha256="1z9a725jd9nparid0df7fyvsa5mvz92krj0q7mq75x6cprr44f29"; depends=[googleAuthR googleCloudStorageR]; }; bigRR = derive2 { name="bigRR"; version="1.3-10"; sha256="08m77r9br6wb9i21smaj4pwwpq3nxdirs542gnkrpakl7bvyp6s3"; depends=[DatABEL hglm]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; @@ -3810,7 +3908,7 @@ in with self; { biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigdata = derive2 { name="bigdata"; version="0.1"; sha256="1n1zcjhvb2s87d7fkcm95x11ss4b8pczza0n55gxjv4przfiq0in"; depends=[glmnet lattice Matrix]; }; biglars = derive2 { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; }; - biglasso = derive2 { name="biglasso"; version="1.3-3"; sha256="1mv9zildvkq8a5rvhr8hr1d7v3zn58j5bjc17wz75mqk0dsfwdjs"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; + biglasso = derive2 { name="biglasso"; version="1.3-5"; sha256="09ckg2cdq0cg78ji08mg831shy8q5d949b2bi2zw7x05glx7b0mg"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; }; bigmemory = derive2 { name="bigmemory"; version="4.5.19"; sha256="191gbzca557kpk7mdsg716vfyqpr7j5din6qb8hin4g1nkzzwmg6"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; @@ -3818,7 +3916,7 @@ in with self; { bigpca = derive2 { name="bigpca"; version="1.0.3"; sha256="0hqkaamj5fyp2jw5727pkvmnqr194ngh4hlja14qmj81nr26a88p"; depends=[biganalytics bigmemory bigmemory_sri irlba NCmisc reader]; }; bigrquery = derive2 { name="bigrquery"; version="0.3.0"; sha256="0g13fqs0x5v7nzqd0iyajw4dw9arykm3zn0wvnk0lb7c9izkk9lr"; depends=[assertthat DBI dplyr httr jsonlite R6]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-0"; sha256="0jjlv9qidn8xrz630wbyq7kz7vlxgaphv2y2siv90j01j5nj4s89"; depends=[quadprog]; }; - bigstep = derive2 { name="bigstep"; version="0.7.1"; sha256="1x8bx0n9nplb6h54nf1s18qv2zgy79ykass08qin6l1d65qvpfwc"; depends=[bigmemory R_utils RcppEigen speedglm]; }; + bigstep = derive2 { name="bigstep"; version="0.7.4"; sha256="0g45fgnamdv1v3b8xvpsj4rzhisyvbbddwyzvzvmmi4a8w20pzn5"; depends=[bigmemory matrixStats R_utils RcppEigen speedglm]; }; bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.0"; sha256="1wh85r6f4jd8xzinczr5g1p1acbcyn4am3v1n4blfbn447l9nx4z"; depends=[]; }; bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; }; @@ -3838,7 +3936,7 @@ in with self; { binhf = derive2 { name="binhf"; version="1.0-1"; sha256="0l8925bj6mjv2y7fn76zh2g8xjig3kbbdy4jl0ip3gd9kbrakl9k"; depends=[adlift wavethresh]; }; binman = derive2 { name="binman"; version="0.1.0"; sha256="103f74gm124vw4rwbfrd5dlgca3v83kqd8m5j9z3ma3snh788mkx"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; - binomSamSize = derive2 { name="binomSamSize"; version="0.1-4"; sha256="0m7g4fagw44l23ancisnp41928pwkr0cwyi1015nbccqbgrw2g3n"; depends=[binom]; }; + binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; }; binomTools = derive2 { name="binomTools"; version="1.0-1"; sha256="14594i7iapd6hy4j36yb88xmrbmczg8zgbs0b6k0adnmqf83bn4v"; depends=[]; }; binomen = derive2 { name="binomen"; version="0.1.0"; sha256="0r89xcbp0jjirr36j3i4xmdjn2wh142c0jv1whzpzjdmcsh806g6"; depends=[dplyr jsonlite lazyeval]; }; binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; }; @@ -3849,22 +3947,24 @@ in with self; { binst = derive2 { name="binst"; version="0.2.0"; sha256="13hg9kmxlaczbkbimlqphpimzx67kncc6qvnlk9cxqyvfkb0ph47"; depends=[]; }; bio_infer = derive2 { name="bio.infer"; version="1.3-3"; sha256="14pdv6yk0sk6v8g9p6bazbp7mr3wmxgfi6p6dj9n77lhqlvjcgm9"; depends=[]; }; bio3d = derive2 { name="bio3d"; version="2.3-1"; sha256="0dm582jam4ll5q82vfxf1gjrmv1qzl60kws6vmxjx91d5jwf1fqy"; depends=[Rcpp]; }; + bioOED = derive2 { name="bioOED"; version="0.1.1"; sha256="18b66s5dn8a67iwb0g1bmbi856ip81yfa57m40kf7phsga52ncg1"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; biogas = derive2 { name="biogas"; version="1.7.0"; sha256="1c0w78x2jjgsxffcz61lfs5m72kkds55c73z970nbxvhqk8n15j6"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; biogram = derive2 { name="biogram"; version="1.4"; sha256="1kkim6dxmvvpby2ir280adl14jmrz7nsib3m8g2ki81d539km6il"; depends=[bit combinat entropy partitions slam]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.0"; sha256="0ws99rx7bhqi448qqy08jsl3c4vbq96gigqb85yv1mzrc82sg62p"; depends=[EBImage httr tiff]; }; bioinactivation = derive2 { name="bioinactivation"; version="1.1.5"; sha256="0m20947n2kzrfy8a592k1d9fg1xlv83vjf11pp4h5hhxd8fbm0w5"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS]; }; - biomartr = derive2 { name="biomartr"; version="0.3.0"; sha256="15r0dx0pbb2fxgc1ai2f9rg4dd3vly1yxkh4vv698gkf1z0r6cxx"; depends=[biomaRt Biostrings data_table downloader dplyr httr jsonlite RCurl readr stringi stringr tibble XML]; }; + biolink = derive2 { name="biolink"; version="0.1.2"; sha256="12hpd50swnij9jzc8m6bz7iwmndgwmlyj7vnd8hvnz1gc68bjs2p"; depends=[memoise rentrez xml2]; }; + biomartr = derive2 { name="biomartr"; version="0.4.0"; sha256="0smjddxp99w79m26ywbd3ph0822v1cakvqsfgxdy1p7ak164jp21"; depends=[biomaRt Biostrings curl data_table downloader dplyr httr jsonlite RCurl readr stringi stringr tibble XML]; }; biomod2 = derive2 { name="biomod2"; version="3.3-7"; sha256="0mbf6j4m7vvq82l1grmznfqirj1ynr6jzzlpx0s2wjd3hdbvgzia"; depends=[abind dismo earth gbm ggplot2 MASS maxent mda nnet PresenceAbsence pROC randomForest raster rasterVis reshape rpart sp]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; bioplots = derive2 { name="bioplots"; version="0.0.1"; sha256="184wp1jvgf7a80srrfq72a4r1la2psr8b16kxs00v2gcbgjyvr10"; depends=[ggplot2 gplots RColorBrewer reshape2]; }; biorxivr = derive2 { name="biorxivr"; version="0.1.3"; sha256="1vi035c4jld5i52xnp79dn5642308cv11vfrw0n62wlsbjfbdma4"; depends=[XML]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.2"; sha256="1avzkbk91b7ifjba5zby5r2yw5mibf2wv05a4nj27gwxfwrr21cd"; depends=[amap cluster e1071 rgl scales]; }; - biosignalEMG = derive2 { name="biosignalEMG"; version="2.0.0"; sha256="0avn35r567crp3z4i1fvlfirvc085cf3g6znc6wgnm7mhxp3l1ss"; depends=[signal]; }; + biosignalEMG = derive2 { name="biosignalEMG"; version="2.0.1"; sha256="1prdr0pa1vd190pqxr7y87sjy10icfj9wb7jc3r5q8qmk5lpnyq5"; depends=[signal]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="3.0"; sha256="0k5dgaw2ris9vp370d8qhpnvnd0hllac8cv5sp52vgqskwygg7fx"; depends=[boot lattice MASS rpanel SpatialEpi tkrplot]; }; - bipartite = derive2 { name="bipartite"; version="2.07"; sha256="10gpmcnlnhv55ffff23xsmwbq58r2wvg54wyv1isa0jp4vh0b67x"; depends=[fields igraph MASS permute sna vegan]; }; + bipartite = derive2 { name="bipartite"; version="2.08"; sha256="16j70ikzprjsm81w9bqbp26xxf14ckw654dy7c5hkz24x62qsx2i"; depends=[fields igraph MASS permute sna vegan]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; }; birdnik = derive2 { name="birdnik"; version="0.1.0"; sha256="1ql29qbv7jw6cngd36qcgljx0zvvzp2v5rjd44v0j04gww1kb2bc"; depends=[httr]; }; birdring = derive2 { name="birdring"; version="1.3"; sha256="1vlivapmgq3kz2zz795c7hcfpibnqcfnxp7m42di37yngqc90q87"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; @@ -3879,8 +3979,8 @@ in with self; { bivrp = derive2 { name="bivrp"; version="1.0"; sha256="0q00k24fssvjkgpndg84vdm7w9hswq593k6yjha4pl0a8bmnv6f8"; depends=[MASS]; }; biwavelet = derive2 { name="biwavelet"; version="0.20.11"; sha256="0fmk4b8gzbq0l4n08zq4pl1csaxxxi3hpqd886ccbhmg6zn8dz01"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; - bizdays = derive2 { name="bizdays"; version="1.0.1"; sha256="1nig6nfxw7vrvq20p49l2b5z8cnjihljivir3lgj99djb5w8i6lk"; depends=[]; }; - bkmr = derive2 { name="bkmr"; version="0.1.0"; sha256="0pw82sd8x82nk5c5c6lr7yqr767nrkgk1rvbpwy5vwdpvwwj5ibl"; depends=[dplyr fields magrittr MASS nlme tidyr truncnorm]; }; + bizdays = derive2 { name="bizdays"; version="1.0.2"; sha256="1p2jlpjfwhpqmb9ahz0dp0iwywsg62x8f5sq6aws267v6jdhnqwd"; depends=[]; }; + bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; blackbox = derive2 { name="blackbox"; version="1.0.18"; sha256="1sgq6i8p066li9lr3241zplygv7yc7mp7k13c6nih0289v3l7jg7"; depends=[geometry lattice MASS nloptr numDeriv proxy rcdd Rcpp RcppEigen spaMM]; }; blavaan = derive2 { name="blavaan"; version="0.2-3"; sha256="1hbcvjgkf0hcajg12dmf0zpyf4nhp938gbqk511vz1033iaamha2"; depends=[coda lavaan loo MASS MCMCpack mnormt nonnest2 runjags]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; @@ -3911,7 +4011,7 @@ in with self; { bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; }; bmp = derive2 { name="bmp"; version="0.2"; sha256="059ps1sy02b22xs138ba99fkxq92vzgfbyf2z5pyxwzszahgy869"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="3.0"; sha256="0ix5hfsvs2vnca0l1aflynddw6z85cqdyxn0y7xynkkapk182g4p"; depends=[LowRankQP lpSolve]; }; - bnlearn = derive2 { name="bnlearn"; version="4.1"; sha256="0ywj94m9jvwci3q1abld2yfpz0h48x4lbfqyqyg43pbzs3p7p6r0"; depends=[]; }; + bnlearn = derive2 { name="bnlearn"; version="4.1.1"; sha256="16jqkysz9s1a9hd7wki9l4ifzj88176c5p5fsa1ww2zadsa9njbd"; depends=[]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.4"; sha256="0rbv8vq7wlzc1mmjqaw9yxjfdgb0cwiwvhwlay24njq16fhidk9w"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpmr = derive2 { name="bnpmr"; version="1.1"; sha256="0hvwkdbs2p2l0iw0425nca614qy3gsqfq4mifipy98yxxvgh8qgc"; depends=[]; }; @@ -3932,14 +4032,13 @@ in with self; { bootRes = derive2 { name="bootRes"; version="1.2.3"; sha256="0bb7w6wyp9wjrrdcyd3wh44f5sgdj07p5sz5anhdnm97rn1ib6dz"; depends=[]; }; bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; }; bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; - bootTimeInference = derive2 { name="bootTimeInference"; version="0.1.0"; sha256="0kpb0xnvyjf3z2zy1970zzmiiln232m8xykz9qylpmln91z6xnjm"; depends=[Rcpp RcppArmadillo]; }; bootnet = derive2 { name="bootnet"; version="0.4"; sha256="1xc7ajvbsic4c881pn4k9xrbvijpjig9x8ij284ljvfbwd6ymgfd"; depends=[abind corpcor dplyr ggplot2 gtools huge IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; bootsPLS = derive2 { name="bootsPLS"; version="1.0.3"; sha256="0jkpci97chbvlfkcbbj3gm2dnj5aiwfrh739kd4fa0zra4ac1adh"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; - boral = derive2 { name="boral"; version="1.2"; sha256="1xd9g3ll6ax363ip0wh5zpk8yw23pcv4wxlm2xxshmxyx0k9gqfk"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; + boral = derive2 { name="boral"; version="1.3.1"; sha256="0kwgjfp4r8a2mph83n3ljlqr7077i4f8dvbk2kz80n5jq48v84j0"; depends=[abind coda fishMod MASS mvtnorm R2jags]; }; bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; }; boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boxoffice = derive2 { name="boxoffice"; version="0.1.1"; sha256="19l65nxrj0q7vr5ds6cwf7ynaqzd3ivzx673svvl6wmxlgn67cfi"; depends=[foreach lubridate rvest xml2]; }; @@ -3954,9 +4053,10 @@ in with self; { braQCA = derive2 { name="braQCA"; version="0.9.9.6"; sha256="1xqy0vykxdp0kr87w1sq8yjqrj0y8xh64fr2y8l79763xkyxpn0y"; depends=[bootstrap dplyr QCA QCAGUI]; }; braidReports = derive2 { name="braidReports"; version="0.5.3"; sha256="107c9lrzb55dw5pal8qqpn8is3nrh19vfngx3zcfpmc49f06kskq"; depends=[braidrm ggplot2]; }; braidrm = derive2 { name="braidrm"; version="0.71"; sha256="1cn0rdlw775pmzbjmhny7gkm901a3qgz7infqb5s9az606xg54d3"; depends=[]; }; - brainGraph = derive2 { name="brainGraph"; version="0.72.0"; sha256="1r52zyvyxd7qj46ffpvv5vjjmkk8zanvq3w1mdww1fsim94i1507"; depends=[abind ade4 boot cairoDevice data_table foreach ggplot2 Hmisc igraph oro_nifti permute plyr RcppEigen RGtk2 scales]; }; + brainGraph = derive2 { name="brainGraph"; version="1.0.0"; sha256="0vphir0jyf21yyrsbfdjciyi9nb1ijkrkzdgqfnv1jxpvzk4g5zn"; depends=[abind ade4 boot cairoDevice data_table foreach ggplot2 Hmisc igraph oro_nifti permute plyr RcppEigen RGtk2 scales]; }; brainR = derive2 { name="brainR"; version="1.2"; sha256="1515v6kk73p4s3vrnkpkilfxfyqrf7b762sq6j364ygsyfybvh2z"; depends=[misc3d oro_nifti rgl]; }; brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; }; + brant = derive2 { name="brant"; version="0.1-1"; sha256="143nlap5dl5rymlzhaqq8n2vw6y9mxmps5pm6hlrnmcbkb2mk36v"; depends=[MASS]; }; brea = derive2 { name="brea"; version="0.1.0"; sha256="0jawpl4d7himydb9z4kqpa7s6b7ghw9yp5j6xvzilbka0agpazck"; depends=[]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; }; @@ -3964,18 +4064,21 @@ in with self; { brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; }; brewdata = derive2 { name="brewdata"; version="0.4"; sha256="1i8i3yhyph212m6jjsij61hz65a5rplxw8y2xqf6daqiisam5q6i"; depends=[RCurl stringdist XML]; }; brglm = derive2 { name="brglm"; version="0.5-9"; sha256="14hxjamxyd0npak8wyfmmb17qclj5f86wz2y9qq3gbyi2s1bqw2v"; depends=[profileModel]; }; + brglm2 = derive2 { name="brglm2"; version="0.1.3"; sha256="073i573rsnfzdqji027l7i5icpk60x4iw8hda1d982lwdchrdg0l"; depends=[enrichwith MASS Matrix nnet]; }; bride = derive2 { name="bride"; version="1.3"; sha256="03k9jwklg1l8sqyjfh914570880ii0qb5dd9l0bg0d0qrghbj0rk"; depends=[]; }; bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; + bridgesampling = derive2 { name="bridgesampling"; version="0.1-1"; sha256="0bzni5hjclavkg7k7z65d95zjsxkvy8h4qv499h6ai091mk2ggs0"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; briskaR = derive2 { name="briskaR"; version="0.1.0"; sha256="0fx254pc250jv53kmd6miw8blcp43c72myah9g5ns2s84pcdmx6h"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; }; brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; }; - brms = derive2 { name="brms"; version="1.5.1"; sha256="1qh72qfkpg2226ckjraca9lc5waaajnmv729w52c04b2vmxzsr0x"; depends=[abind bayesplot coda ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools RWiener shinystan]; }; + brms = derive2 { name="brms"; version="1.6.1"; sha256="1r7zpfw1r3rdf56piqdb7242lywal18xi9dhzglbindrnkrhcnpa"; depends=[abind bayesplot coda ggplot2 loo Matrix matrixStats mgcv nlme Rcpp rstan rstantools RWiener shinystan]; }; brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; }; broman = derive2 { name="broman"; version="0.65-1"; sha256="1zfcrkky4a71zq4mgnc0xcy0m8c9srwq850s97qry9a69f6j5c42"; depends=[assertthat ggplot2 jsonlite RPushbullet]; }; broom = derive2 { name="broom"; version="0.4.2"; sha256="0i2s3jbi0v5xhbqkmms4f17i3x9s6lan4bj521qmxwiwc89r8h4z"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; }; - brotli = derive2 { name="brotli"; version="0.8"; sha256="1cdc1ghvwdr64spns7x96gml9vqjd33xhk76w04nk0ldb3in4jfp"; depends=[]; }; + brotli = derive2 { name="brotli"; version="1.0"; sha256="0sicqwri8rxqxwhj4z8ckfls2yz09jwb9c5pjk5dhxrsyh85k80m"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.2.0"; sha256="0y99px2m02rl60qgf6pjbjv6isp8v1w9sny6p2icgsx4bwxjxmns"; depends=[ape curl httr phytools taxize]; }; + brt = derive2 { name="brt"; version="1.1.0"; sha256="11a6zpdml5vz3kcdcajw5zcck1zbp4kfdkqm3y6q7qj8ym2f12q5"; depends=[ggplot2]; }; bsam = derive2 { name="bsam"; version="1.1.1"; sha256="00ckj2pmyh7pqmbvwlgvgc3m53c807mri46jc0ivfwgf0kc8q0s0"; depends=[coda dplyr ggplot2 gridExtra msm mvtnorm rjags rworldxtra sp tibble]; }; bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; }; bshazard = derive2 { name="bshazard"; version="1.0"; sha256="151c63pyapddc4z77bgkhmd7rsa1jl47x8s2n2s8yc6alwmj6dvs"; depends=[Epi survival]; }; @@ -3984,13 +4087,14 @@ in with self; { bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; }; bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; }; bst = derive2 { name="bst"; version="0.3-14"; sha256="02rnnv3f89329kw81a1v88wjzrfjshqjijw5hp3zyydcsfa3j088"; depends=[doParallel foreach gbm rpart]; }; - bsts = derive2 { name="bsts"; version="0.6.5"; sha256="1ywk73f5dnlpwz1hl1rpaxnvg9zag70fs237gw3gc8gsdydc7dlk"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; - btb = derive2 { name="btb"; version="0.1.3"; sha256="0ac6jfk66ij4av5i63gm69ry7vfp08ka6l6l3y28ycf10fzp84k8"; depends=[Rcpp sp]; }; - btergm = derive2 { name="btergm"; version="1.8.2"; sha256="16vyxyg3nc7p65nrg46f5mh1py3i6vxk34m9645376s80gxkspcn"; depends=[boot coda ergm igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; }; + bsts = derive2 { name="bsts"; version="0.7.0"; sha256="1v3a8vv9mj7y74jxl6vvhi6znkz0kagc1x4r8f7c6270z37v1sbk"; depends=[BH Boom BoomSpikeSlab xts zoo]; }; + btb = derive2 { name="btb"; version="0.1.14"; sha256="0nk76ddsg8pjd35y2yqw27iammk948i29xmr0ha9l8b867693m44"; depends=[Rcpp sp]; }; + btergm = derive2 { name="btergm"; version="1.9.0"; sha256="03xqzavq3n1zcsfagkprn30i4k11cv1145ni0i8x0jij5dwn7av9"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; }; btf = derive2 { name="btf"; version="1.1"; sha256="0n1h4hmjpvj97mpvannh3s5l08m4zfv0w64hrgdv4s5808miwfzc"; depends=[coda Matrix Rcpp RcppEigen]; }; bujar = derive2 { name="bujar"; version="0.2-1"; sha256="0g6mj1x9zbxkn3kxwbs2ncjfsicicvyr92krz8yqrms042gbk9ji"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; + bupaR = derive2 { name="bupaR"; version="0.1.1"; sha256="1fir2q3y8rzcx61x0gd8zqwb5japajpmhax13jlnmjkydml6npqv"; depends=[data_table dplyr magrittr]; }; burnr = derive2 { name="burnr"; version="0.1.2"; sha256="1cmf820148wmm9m8f41r81kckhn2iv3cw6k9qdybcxy1j1m520jp"; depends=[ggplot2 plyr reshape2]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; @@ -3999,7 +4103,7 @@ in with self; { bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; }; bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; }; c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; - c212 = derive2 { name="c212"; version="0.90"; sha256="15s0482kl7zd2kzxcyzd7gdclv1z8yn4x70cgsdlbmd5047pcn9k"; depends=[coda]; }; + c212 = derive2 { name="c212"; version="0.93"; sha256="10gwkr2w05bi27zwvspm3g31a1dpqbh1i52vyrfaamqkxypa11nh"; depends=[coda]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="0.2"; sha256="13sp3wywv82wgi1vsbxwn68v9xigy0fi3mcwyxjmmgmnsxns2fza"; depends=[lme4 Matrix]; }; cIRT = derive2 { name="cIRT"; version="1.2.0"; sha256="1qgcga9rk4xqz1i2rzwwf11sip3s3gni44czg9d8sjd725hx1pmz"; depends=[Rcpp RcppArmadillo]; }; @@ -4021,29 +4125,30 @@ in with self; { calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; camel = derive2 { name="camel"; version="0.2.0"; sha256="0krilird8j69zbll96k46pcys4gfkcnkisww138wslwbicl52334"; depends=[igraph lattice MASS Matrix]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; - camtrapR = derive2 { name="camtrapR"; version="0.99.7"; sha256="0yhpxx7p02j10b2ascdf0mqhlv8gssi6v9g4pc0s4p6bi2zhs7m6"; depends=[overlap rgdal ritis secr sp taxize]; }; + camtrapR = derive2 { name="camtrapR"; version="0.99.8"; sha256="06sl3rlzgjf3yq9y0sg664xc0xfxwlvvd5w4wr5946h6kwvnhih4"; depends=[overlap rgdal ritis secr sp taxize]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.7-2"; sha256="0sbvngpyni4pagqb5xqjnk5yjd391rdjqq7aypnm2wd3i1am90hm"; depends=[car heplots]; }; + canvasXpress = derive2 { name="canvasXpress"; version="0.15.2"; sha256="0kymbm8qy132ac7jj27p2ad0vxvwydrgm56ghvrqqywnfqkhygxr"; depends=[htmlwidgets]; }; cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; }; caper = derive2 { name="caper"; version="0.5.2"; sha256="1l773sxmh1nyxlrjz8brnwhwraff826scwixrqmgdciqk7046d35"; depends=[ape MASS mvtnorm]; }; capm = derive2 { name="capm"; version="0.9.1"; sha256="1njfw4pl6hmapdspvwabn7db2c4nqf3ja4rlv1lmpaakinzhivj2"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; }; - captr = derive2 { name="captr"; version="0.2.0"; sha256="04bg1d22n2h24w4j46fg30p1n85qvy5868sllrcwybrv4j15xh1f"; depends=[curl jsonlite]; }; + captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; car = derive2 { name="car"; version="2.1-4"; sha256="0a6v7rsd1xsdyapnfqy37m7c4kx9wslkzsizc9k0lmnba0bwyfgx"; depends=[MASS mgcv nnet pbkrtest quantreg]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; cardidates = derive2 { name="cardidates"; version="0.4.7"; sha256="0dxb2941w56s479laf315hqh9iv3k2l1ds7k8hdl9akcacagjgs2"; depends=[boot lattice pastecs]; }; cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; }; - care = derive2 { name="care"; version="1.1.9"; sha256="0fx5cbi1fx3hpyzghn1788rkh91i10z1ngryqc1v3iqqn3akbk4j"; depends=[corpcor]; }; - caret = derive2 { name="caret"; version="6.0-73"; sha256="1jzaqwv4glyqqnfbpalgajd0ag866247vvdh5i83ffqs1yhs984h"; depends=[car foreach ggplot2 lattice ModelMetrics nlme plyr reshape2]; }; + care = derive2 { name="care"; version="1.1.10"; sha256="00h36by40v60mqzbf615a99sdfz0i42i57wybxrcm7y1y2la0da8"; depends=[corpcor]; }; + caret = derive2 { name="caret"; version="6.0-76"; sha256="1w31xzpmj8p6r6s7s1vwnjxainq54bbh4cqm177ba0myv69hh8cc"; depends=[car foreach ggplot2 lattice ModelMetrics nlme plyr reshape2]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.0"; sha256="0v9gyp81abrbm8b79ch927iqh0v84q5222bvg1wx8n65vx59sx42"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.0"; sha256="0n2w8l9gch0zvq3k0bsqqq28vf6s0czn3ybm0sy2i1bkq85zfm82"; depends=[dplyr lazyeval magrittr pander tidyr]; }; cartogram = derive2 { name="cartogram"; version="0.0.2"; sha256="055aq2fmbx6ypyqsj427l37px8fld4b9bmc2kcmsi6fmnncb5pxa"; depends=[rgeos sp]; }; - cartography = derive2 { name="cartography"; version="1.4.1"; sha256="0bblhnz94rhjrrm0v9mvlvqrcqfxq4762crijk34xf9cxcpmhjx4"; depends=[classInt raster rgeos rosm sp]; }; + cartography = derive2 { name="cartography"; version="1.4.2"; sha256="1bqadjn1h9xlmswjsylipgni2f78lld4v0y0vybi0cd68m22wxp2"; depends=[classInt raster rgeos rosm sp]; }; carx = derive2 { name="carx"; version="0.6.2"; sha256="1wijkpbv2x75ay9pba4sjazjpalrd31zclnnansmhghf1wiizciq"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; }; @@ -4062,6 +4167,7 @@ in with self; { causaleffect = derive2 { name="causaleffect"; version="1.3.3"; sha256="1nglsdnd0zb0qzyyw22fnlqzc8ds9mqdnc9anl9g3pdn9lz2wkqc"; depends=[ggm igraph XML]; }; causalsens = derive2 { name="causalsens"; version="0.1.1"; sha256="1z92ckqa07ajm451wrldxx9y43nawlvj2bsz0afxc9mrhjwjg5dh"; depends=[]; }; cba = derive2 { name="cba"; version="0.2-18"; sha256="15fjnc9mg30fhm9rfsgz7d24hx83ra8bgyc2s1sz5gda4ppq53pr"; depends=[proxy]; }; + cbanalysis = derive2 { name="cbanalysis"; version="0.1.0"; sha256="170rhycd78k8ivibvaa7r5hx64wpqwb067s182iwx51fb2yf01a7"; depends=[]; }; cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.2.1"; sha256="0nsg0fzaqhzv8r2lwz5xlybwgv25c0a2hid91ky95yaqvnjrp6mq"; depends=[jsonlite whisker yaml]; }; ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; @@ -4071,11 +4177,12 @@ in with self; { cccp = derive2 { name="cccp"; version="0.2-4"; sha256="1hw0xzfdycrnhkym5va430jk1b9ywf7wbm9qyj4a62n210hk4nzc"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; }; ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; }; - ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.2"; sha256="1q6fcmd2byjpwsqa9a9m9w8dm9gy76g9477p9jb8q92kiv2rs6bq"; depends=[Rcpp sparsebnUtils]; }; + ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.3"; sha256="0b5rm17zqf4w22vfjhp13wjqrds7f6mbvmd0kazxrnrnb10799a3"; depends=[Rcpp sparsebnUtils]; }; ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; }; cchs = derive2 { name="cchs"; version="0.3.0"; sha256="0163qvy1k39bwbbidr7wj6cs0nv8m8nh0as9532j8mshq14d0i8c"; depends=[survival]; }; cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; }; cda = derive2 { name="cda"; version="2.0.0"; sha256="1vq90z6kafiz5b884hxsz3lg8a0zis1n475lmvwlymcam5rpgjrc"; depends=[randtoolbox Rcpp RcppArmadillo reshape2 statmod]; }; + cdata = derive2 { name="cdata"; version="0.1.0"; sha256="0f27ib3klwapzk9mn757pc9a2zjh8j7k14ndq127hgv1zz7rmkgx"; depends=[dplyr replyr tibble tidyr wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.5.1"; sha256="0k63hrx3cc04xpi2sxl5g8mn7lc7rh4q33mj3filyiyppj16jixf"; depends=[dplyr httr jsonlite purrr readr V8 xml2]; }; cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; }; @@ -4092,7 +4199,7 @@ in with self; { cem = derive2 { name="cem"; version="1.1.17"; sha256="1jnhsrc1jhax3zlw9ynla7g9z5i4w01iar7f7hmv92kp1cwh8rbd"; depends=[combinat lattice MatchIt nlme randomForest]; }; cems = derive2 { name="cems"; version="0.4"; sha256="0mk02m702xfr1gh0l3973z1hdpncgjl2vfd1k1iss5s64k56gs4q"; depends=[plotrix rgl vegan]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; - censReg = derive2 { name="censReg"; version="0.5-22"; sha256="0s955gzd40nwl2qq20ss1yqjfpdrhv6bwbiksvd1smg4ip038w5q"; depends=[glmmML maxLik miscTools plm sandwich]; }; + censReg = derive2 { name="censReg"; version="0.5-26"; sha256="1g69261ajha9p762xg2a5pj127b9pfws6ylpiqhjv7h96n12f2pi"; depends=[glmmML maxLik miscTools plm sandwich]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; }; censusr = derive2 { name="censusr"; version="0.0.2"; sha256="1x2s0q0d30hsb5sqdgvlz8anv5vcsm0ld9p96jzsin6lfsgbb1dm"; depends=[dplyr httr]; }; @@ -4100,14 +4207,15 @@ in with self; { cents = derive2 { name="cents"; version="0.1-41"; sha256="03ycbd0c8b7danbblaixg6sm7msr9ixkanqswczqa8n2frhjfgj0"; depends=[]; }; cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; }; cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; }; - cffdrs = derive2 { name="cffdrs"; version="1.7.5"; sha256="1v5acbp8469b2mbv3x6986f8rw6hh34jqkwdm6fp50dx1r8x9p1x"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; + cffdrs = derive2 { name="cffdrs"; version="1.7.6"; sha256="00n3h2vf855anxh0xgsps7sv0kj819864wjdmkiak1lsacysav8s"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; }; cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; }; cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgam = derive2 { name="cgam"; version="1.6"; sha256="04mwkij3fyamm8i1wnd87vihcg7c45872n10q9ax5f2nby95ddrc"; depends=[coneproj svDialogs]; }; - cgdsr = derive2 { name="cgdsr"; version="1.2.5"; sha256="1w5nd4hirlw8s9a8ysr6102pq9sbz4820qni06g98ykyg7yb32hx"; depends=[R_methodsS3 R_oo]; }; + cgdsr = derive2 { name="cgdsr"; version="1.2.6"; sha256="05q26g7gflq4hsd3xa5xkjc3mhvml7i6dzamfwm0i14kxigghqp8"; depends=[R_methodsS3 R_oo]; }; cggd = derive2 { name="cggd"; version="0.8"; sha256="06z0mrxxc02parn9vkjv89qq4yqmsccsy319fi6c5iarssyvin1r"; depends=[]; }; cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; }; cghFLasso = derive2 { name="cghFLasso"; version="0.2-1"; sha256="0b1hnjf9g0v47hbz0dy9m6jhcl1ky20yyhhmm8myng2sndcpjsbf"; depends=[]; }; + cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; cghseg = derive2 { name="cghseg"; version="1.0.2-1"; sha256="0q9ks19r21b6p0gfd7mnsgp7pbihz3yzmbzijlrx178f1z9yjx5q"; depends=[]; }; cgwtools = derive2 { name="cgwtools"; version="3.0"; sha256="01888n056x4c8g0676jnbh6d89hamzxrh33aw6r28mzlnmfy5lmw"; depends=[]; }; changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; }; @@ -4115,23 +4223,23 @@ in with self; { cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; chebpol = derive2 { name="chebpol"; version="1.3-1789"; sha256="1505zdzvc9drw7n8qw5jmqligjgp5gwwki4wlk8dsm0p3p06dvd2"; depends=[]; }; checkmate = derive2 { name="checkmate"; version="1.8.2"; sha256="1zqcggl9m7slvc0q6zyhssdypb7jzf3l9byl5vxh1qdwjiw2y64g"; depends=[backports]; }; - checkpoint = derive2 { name="checkpoint"; version="0.3.18"; sha256="17r3hamj66hx1w050yim21b8kp1mbfkjh6rsdmd0z3s04wash7bi"; depends=[]; }; + checkpoint = derive2 { name="checkpoint"; version="0.4.0"; sha256="0ffyb681025yw7ghwbvszispm0dklxkspdafbbwk9df33mx0464k"; depends=[]; }; cheddar = derive2 { name="cheddar"; version="0.1-631"; sha256="0s6v3xcpv8ppgx6q6h2hgrjcf3f3i87kmylnr9q9zhry7729aiyn"; depends=[]; }; chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; }; - chemometrics = derive2 { name="chemometrics"; version="1.4.1"; sha256="019r0n4s6lzzjyp94zv12gn113p69c4s4ji0aqinfzb5fw0dlikn"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; + chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-11"; sha256="0ixrzbzg559h0qb33b9158rk6w6as2b34b7iq5vzm429cpyzl7l8"; depends=[bitops lpSolve Matrix slam]; }; chi = derive2 { name="chi"; version="0.0"; sha256="0mn402vwiwcjdbchk1d3pdq4ir992aa0h3xf1m7y9mfkqyzkdqpj"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; - childsds = derive2 { name="childsds"; version="0.5"; sha256="1fmisp6k375harjxsyzpwnd8zh3kd7vlhin18q1svfwdjyy9k3xh"; depends=[]; }; - chillR = derive2 { name="chillR"; version="0.65"; sha256="0r584h2y2w7hcrdxvf7xlw4ivbyid293li0scxwvkd4v8s78kmcm"; depends=[fields httr Kendall pls raster readxl RMAWGEN sp XML]; }; - chinese_misc = derive2 { name="chinese.misc"; version="0.1.1"; sha256="0gcr0lw3ns3wbjchhzb0alabs4d8fmq8gvf4ggph3m8fcyfch0cc"; depends=[jiebaR NLP Ruchardet stringi tm]; }; + childsds = derive2 { name="childsds"; version="0.6"; sha256="1zi6gchyd087c1gx3359gpsfsciry66dxj921q6zxdzn5sg09bfn"; depends=[dplyr gamlss magrittr tidyr]; }; + chillR = derive2 { name="chillR"; version="0.66"; sha256="1qw9l3drw3r4an1jy2bckaslwla3s5fvpqr7ahvd2m6alx05b0k6"; depends=[fields httr Kendall pls raster readxl RMAWGEN sp XML]; }; + chinese_misc = derive2 { name="chinese.misc"; version="0.1.5"; sha256="1grp7kyvn9wppsikyvcr5sh1wfm9w1lcffraggmlr3014kl6siaq"; depends=[jiebaR Matrix NLP Ruchardet slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chngpt = derive2 { name="chngpt"; version="2016.7-31"; sha256="1hjqdkqai6aij3giarbxasijipb376qm081ri9w6snd5gy6izzsi"; depends=[boot kyotil MASS survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-1"; sha256="07nnqqczi9p3cffdijzx14sxhqv1imdakj7y94brlr5mbf5i4fl4"; depends=[AlgDesign]; }; choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.1"; sha256="0sib3ic79hff5w2xmmw4z9c6bax33jczrcijs7ywdb8y3viwy5av"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; - choroplethr = derive2 { name="choroplethr"; version="3.5.3"; sha256="1iagrm8ybr7whn77i96cnyl2kil96lb9zznlbc93kcy17jbf4yns"; depends=[acs dplyr ggmap ggplot2 Hmisc R6 RgoogleMaps scales stringr WDI]; }; + choroplethr = derive2 { name="choroplethr"; version="3.6.1"; sha256="11f529zcflbqbchnp3v5yw2vwrlhyfib5pn2j6l60x0gdfxp07bb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps scales stringr tigris WDI]; }; choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; }; choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; @@ -4139,7 +4247,8 @@ in with self; { chron = derive2 { name="chron"; version="2.3-50"; sha256="1w3sl60gsirniqslb3pa75caiqbzbvc44phpd4czvwkb62xx1vx9"; depends=[]; }; chunked = derive2 { name="chunked"; version="0.3"; sha256="1qhrq957w8nyxndvrnf3xh1p1g7f9qjyr12ybcysgrz4lk0q8xcs"; depends=[DBI dplyr LaF lazyeval]; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; - circlize = derive2 { name="circlize"; version="0.3.9"; sha256="0zaqisklz28y262lwh11m4fi5x6rr6hzw4fzibgsx4x34nxxavlb"; depends=[colorspace GlobalOptions shape]; }; + cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; }; + circlize = derive2 { name="circlize"; version="0.3.10"; sha256="19zkklqyyqq88njcybbafi6vbz87sivsfhg7kk9kywdijl799mxw"; depends=[colorspace GlobalOptions shape]; }; circular = derive2 { name="circular"; version="0.4-7"; sha256="1kgis2515c931ir76kpxnjx0cscw4n09a5qz1rbrhf34gv81pzqw"; depends=[boot]; }; cit = derive2 { name="cit"; version="2.1"; sha256="1kiph7znr9fiq704wfbms6hsl4shxfqijrlh4dhmik9x9m8sj538"; depends=[]; }; citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; @@ -4149,23 +4258,23 @@ in with self; { ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; }; cladoRcpp = derive2 { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; }; - clarifai = derive2 { name="clarifai"; version="0.4.0"; sha256="0qlv4aj5vlrrc0h6gyryly33rfz5jz7cahw5l6qdbba4dibrkajm"; depends=[curl jsonlite]; }; + clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; }; class = derive2 { name="class"; version="7.3-14"; sha256="173b8a16lh1i0zjmr784l0xr0azp9v8bgslh12hfdswbq7dpdf0q"; depends=[MASS]; }; classGraph = derive2 { name="classGraph"; version="0.7-5"; sha256="19jb9jr1gfg4karymrbilh0zjrlsczhy2q03x5b0jxnh4ykhxfj8"; depends=[graph Rgraphviz]; }; - classInt = derive2 { name="classInt"; version="0.1-23"; sha256="07anmwmchri4ppl01y041zh3xdqsdwzv4n5jpr3crmpk39qwwhzq"; depends=[class e1071]; }; - classifierplots = derive2 { name="classifierplots"; version="1.3.2"; sha256="18xsjsfsr4dz791b0ap8lcbk7mnr3i0pspbal6n5ah864ngqvbvn"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; + classInt = derive2 { name="classInt"; version="0.1-24"; sha256="18ng9y647jwb855pkmz555zdrznjgw4ynppaw43xm8qf8n291p7k"; depends=[class e1071]; }; + classifierplots = derive2 { name="classifierplots"; version="1.3.3"; sha256="01rvn0jwliyxj7q4cmyv8an5g7fzn6y3sccp8mj6bcqjyblfcfaa"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; }; classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; }; cleanEHR = derive2 { name="cleanEHR"; version="0.1"; sha256="1ppjg72cfh9kdwl8kk7zxyr529xqcwpfcl5lisy7hgpqirma52qn"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; }; - cleanNLP = derive2 { name="cleanNLP"; version="0.24"; sha256="0j4im6518sqdyfwbfabc1q3g01nqfpshznq033193g9b519792z3"; depends=[dplyr magrittr RCurl readr rJava]; }; + cleanNLP = derive2 { name="cleanNLP"; version="1.5.2"; sha256="09zhhv1pkd28l275g6g38b5l7bpgrcj0ks66d8vhqmpqq2038q7c"; depends=[dplyr Matrix readr]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-1"; sha256="05zzp0dbkpljc9jcx05pdlkdwfbrh6h0l2zksq3cpaw5bvz5g1pl"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; }; clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; }; clhs = derive2 { name="clhs"; version="0.5-6"; sha256="0m7pw655d6jidrppk1z84z35n93k1alwq43jh28lf81ydw8finma"; depends=[ggplot2 plyr raster reshape2 scales sp]; }; clickR = derive2 { name="clickR"; version="0.2.0"; sha256="01fsaqgc4fxf0p9ww6z3g84ybn5kgj7qyk781flhg7r4s51qmcwv"; depends=[beeswarm ClustOfVar lme4 lmerTest lqmm ordinal ReporteRs survival xtable]; }; - clickstream = derive2 { name="clickstream"; version="1.1.9"; sha256="0hg8ywnm82r5787qal19rcg7q0jvvrw6ifaya84p6sazwqwy8m4g"; depends=[arules data_table igraph linprog plyr Rsolnp]; }; - clifro = derive2 { name="clifro"; version="3.1-2"; sha256="0fa1r4rsl3cq8dmy0jxalga9qzhiwpdhkzmjgx2hfbkgklfdnr40"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; + clickstream = derive2 { name="clickstream"; version="1.2.0"; sha256="0syjb7wcyf15iw6r2vg3k3nbs9rsvgvyxg61hzdavas0f2pjsyyx"; depends=[arules data_table ggplot2 igraph linprog plyr reshape2 Rsolnp]; }; + clifro = derive2 { name="clifro"; version="3.1-3"; sha256="1y03x1d49h482nc4r4w6h3vycf16k4jzqpxhbygy8igq1lpphvn1"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; climatol = derive2 { name="climatol"; version="3.0"; sha256="0wfqs8yk3m6wpm86yfhsg100d4x67bzz1871mxrs69r6ybrh30qx"; depends=[]; }; climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; }; @@ -4190,22 +4299,22 @@ in with self; { clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; }; clusrank = derive2 { name="clusrank"; version="0.5-2"; sha256="168xad5dyz46yxm139q09n9vp1304yrhikxz5bcfzhm3psyv5fbf"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.0.6"; sha256="0hmj85byw1j1b1crb7nj12wz0rddp5cg21jg1dwg7b0mn5xvy981"; depends=[]; }; - clustMD = derive2 { name="clustMD"; version="1.1"; sha256="192li0nx2hwhh5y21xs70vrnzw3wxbzr95f06makaxcrwf4xlp16"; depends=[MASS mclust msm mvtnorm tmvtnorm truncnorm]; }; + clustMD = derive2 { name="clustMD"; version="1.2"; sha256="0xz4347v4z95ir9mw6hw94p0j5a3ff96dyzjs5wfnynpbc025zmh"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; clustMixType = derive2 { name="clustMixType"; version="0.1-17"; sha256="08drby5ifv8wcww4ns2cma2gyhzwj3x6klvh7fs03wrzn6w78hr0"; depends=[]; }; clustRcompaR = derive2 { name="clustRcompaR"; version="0.1.0"; sha256="1md1ra18q1iga01q12jyy9va4qyvzlybvbdrdfy2kxhh82w057ww"; depends=[dplyr ggplot2 ppls quanteda tidyr]; }; - cluster = derive2 { name="cluster"; version="2.0.5"; sha256="1bkvqmv8h2c423q9ag2afb6s9j2vcdlxsf559zzbimraphrr2c2b"; depends=[]; }; + cluster = derive2 { name="cluster"; version="2.0.6"; sha256="1z4gbz7chxxi4ly6c0yjlikwgf8aa8dlg05cn5cd6pjr21zvh97l"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.7"; sha256="13smdm8dmp4795qqn8an3k22l7xs4i4kgazyjzxdbzkg742akk7q"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; clusterPower = derive2 { name="clusterPower"; version="0.5"; sha256="1g2qpvizyk4q3qlgvar436nrfqxwp5y8yi2y6rch9ak5mbg3yzqb"; depends=[lme4]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; }; - clusterSEs = derive2 { name="clusterSEs"; version="2.3.2"; sha256="1pxfvmkgx45xp7q2fdd34zd2f0snyq6mazqsd1nqrda7791a494f"; depends=[AER Formula lmtest mlogit plm sandwich]; }; - clusterSim = derive2 { name="clusterSim"; version="0.45-1"; sha256="0wmhsz71rspg98smdp08q3jgdkldqn2l3szwdl70lz93kyls3ivv"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; + clusterSEs = derive2 { name="clusterSEs"; version="2.3.3"; sha256="1c68zz6l4dyj77a2sfg8fj5yjn3jlpyj8pbjqjh68wlbpdm4ckvc"; depends=[AER Formula lmtest mlogit plm sandwich]; }; + clusterSim = derive2 { name="clusterSim"; version="0.45-2"; sha256="0mf0qy902v4aqszcapk3c0j2b6kj66krxz7s6adpqzwhwx975zfi"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; }; clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; }; clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; }; clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; }; - clusternomics = derive2 { name="clusternomics"; version="0.1.0"; sha256="054jbzgz53b1vbv5492zrhywjly8pwiiy4j11qsb20sfz4j951h6"; depends=[magrittr MASS plyr]; }; + clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; }; clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; }; clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; }; clustrd = derive2 { name="clustrd"; version="1.1.0"; sha256="0l1mllgqqlkywhhp1a24hlvsiwkk26k58c9rg9m5pagb623w73p4"; depends=[cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; }; @@ -4215,13 +4324,14 @@ in with self; { cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; cmm = derive2 { name="cmm"; version="0.8"; sha256="1661v2lzxgf4s37wdsrnbsvqwppcr7mbp70i1xsysfzki1z6xr19"; depends=[]; }; - cmna = derive2 { name="cmna"; version="0.3.0"; sha256="0ax27y1h0pz8i5ckjcrbgpav6m1srym6av94bvy02mv26ida0l8c"; depends=[]; }; + cmna = derive2 { name="cmna"; version="0.3.1"; sha256="0aayvvzpj5cvhhzpnqdlszmf0s07ivxzl9lw3lqgipk1739wxz5n"; depends=[]; }; + cmpprocess = derive2 { name="cmpprocess"; version="1.0"; sha256="0gqfmbm86bfi2l81pf2dn70rxg58h1y8hiyrp8sv9v84cx20422v"; depends=[compoisson numDeriv]; }; cmprsk = derive2 { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; }; cmprskQR = derive2 { name="cmprskQR"; version="0.9.1"; sha256="002s6ls670sdzrxgqv9gbl646b675q1gn6dzkngnf6rgcdqwid7n"; depends=[quantreg survival]; }; cmrutils = derive2 { name="cmrutils"; version="1.3"; sha256="0zjc0bwp2p03hmnj3zjw7800pcdw8b8161y68npyp3hya0s4i9x0"; depends=[chron]; }; - cmsaf = derive2 { name="cmsaf"; version="1.7.1"; sha256="0q954akb9myb64p7x2zplfljkzqnakx74w93h1n2kfzx7bbh482h"; depends=[fields ncdf4 raster sp]; }; + cmsaf = derive2 { name="cmsaf"; version="1.7.2"; sha256="12kim4nfzar7g6fv2mjqaiy6ks82pp20v4mwnk6b0hilmpvlnhsh"; depends=[fields ncdf4 raster sp]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-3"; sha256="0810kzg78yaxzniq59a4swvdk9qxp37ja52f5n1zssgn0cwz1vk9"; depends=[elliptic emulator]; }; - cna = derive2 { name="cna"; version="1.0-3"; sha256="1iy0ispazhib30kh5wp3jziiyf0992nrdklrq80n0w3zhjyi21rh"; depends=[]; }; + cna = derive2 { name="cna"; version="2.0.0"; sha256="0cfr4g63wwqkkz2xxz76m82p0am2kyazal6sqp7gnrc48x9lv8im"; depends=[Rcpp]; }; cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; cnmlcd = derive2 { name="cnmlcd"; version="1.0-0"; sha256="0kbq01qrmpn133v18rjphhznpnj8g6dcn1lrbsjykhxkqz086s36"; depends=[lsei]; }; coRanking = derive2 { name="coRanking"; version="0.1.3"; sha256="1ss00l0c99fi9p6gcimb31nrl5iflps6lvplnjjqwcqjkb2pjh9p"; depends=[Rtsne scatterplot3d]; }; @@ -4229,7 +4339,7 @@ in with self; { coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; }; cobalt = derive2 { name="cobalt"; version="1.3.1"; sha256="00zgq2c3vkrx4q8wp43giwid4778j9wxcjfn3nkbwlgrsswm0adb"; depends=[ggplot2]; }; - cobs = derive2 { name="cobs"; version="1.3-2"; sha256="1kqyh2c0jlb6gbpgwdk0dh5sh6ziw9wyxvxgdk4n4j8d0klb9kx1"; depends=[quantreg SparseM]; }; + cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; }; cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; }; cocoreg = derive2 { name="cocoreg"; version="0.1.0"; sha256="1x6ffwh8z6nj867wxnvq8qjq7rx0j3swdnb12zv917s0y54dwncx"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; }; cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; }; @@ -4238,7 +4348,7 @@ in with self; { codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; }; codep = derive2 { name="codep"; version="0.6-5"; sha256="18da81wja7z9gnn11xiwi7cg43mrj4w2kjkk8s780krbycnfsn5p"; depends=[]; }; codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; }; - codingMatrices = derive2 { name="codingMatrices"; version="0.2.2"; sha256="1x1h5jdnfx6l8ry7nmn3f1qyzv96vf8axzjxcxqrlylh6z1zc068"; depends=[fractional Matrix]; }; + codingMatrices = derive2 { name="codingMatrices"; version="0.3.0"; sha256="0xbqmcb6yzqdwhq4pcpdsjfix3vy410vd3lbsablna1hgfbbj4p7"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="1.1.0"; sha256="0s8ssaq59vddilz0fin9sgr8fir70c220cffbsy2l0qn34q48627"; depends=[assertthat permute]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.4"; sha256="0phpz4fvvxvpaybp4q1s69qxcpdzj8qxambivncps101mz7jj3sq"; depends=[ggplot2 plyr reshape2 useful]; }; @@ -4252,6 +4362,8 @@ in with self; { cold = derive2 { name="cold"; version="1.0-4"; sha256="00rl2h4pirzvgwi28pr94kkn233wvm2z8yyfsz6andbkjsihp6jw"; depends=[]; }; colf = derive2 { name="colf"; version="0.1.2"; sha256="1xbmc32rp0xlj73krwhqn2ji5xa9kd2anaw88mvi5psdi3d2y1np"; depends=[nlmrt]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; + collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.4"; sha256="14zg5cm6qf2106jw5wsmmlkldd71wg0576raqvzzhwbsfkapsb1r"; depends=[data_tree htmlwidgets]; }; + collpcm = derive2 { name="collpcm"; version="1.0"; sha256="15k6khsgikjpsasyz02bhgd43nij2n7nl0m0sgxvjlcn0nv95y2n"; depends=[latentnet network vegan]; }; coloc = derive2 { name="coloc"; version="2.3-1"; sha256="1j3m9afpkm0bzib38yqvk85b6s6l56s6j2ni96gii4a06r87ig60"; depends=[BMA colorspace MASS]; }; colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; colorSpec = derive2 { name="colorSpec"; version="0.5-3"; sha256="0ffn1x9763xzhfsm5vgkvgpm2a792bqx54ra2x4vda7m78lb6nqr"; depends=[MASS]; }; @@ -4266,7 +4378,7 @@ in with self; { colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="0.3"; sha256="0sxxllfwdbdc283nk9b82xrvb6xali14c6qfywm2qck0k8jh7ppy"; depends=[ggplot2 htmltools htmlwidgets miniUI shiny shinyjs]; }; - colourvision = derive2 { name="colourvision"; version="0.1"; sha256="1v9qipx1rglga0mdw97xbdbq1mgx7avif7a6gi1xh9gvw408x25c"; depends=[rgl]; }; + colourvision = derive2 { name="colourvision"; version="1.1"; sha256="1lygk7ak8hdpscdh80bf3p3z58a37nlrmx02wqfnyd0v6qns8azv"; depends=[rgl]; }; colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; comato = derive2 { name="comato"; version="1.0"; sha256="03jnvv0sczy13r81aljhj9kv09sl5hrs0n5bn3pdi7ba64zgbjiw"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; }; combinat = derive2 { name="combinat"; version="0.0-8"; sha256="1h9hr88gigihc4na7lb5i7rn4az1xa7sb34zvnznaj6pdrmwy4qm"; depends=[]; }; @@ -4282,19 +4394,20 @@ in with self; { compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; compareDF = derive2 { name="compareDF"; version="1.1.0"; sha256="1597xmq857jf4b67k7y869gbflad89rxfvrq8m0gp1wd21wv8z1h"; depends=[dplyr htmlTable tidyr]; }; - compareGroups = derive2 { name="compareGroups"; version="3.2.3"; sha256="0sliphw8yxx93qaf6pk405rqbfnpixjx8yazzjqiird6bm746i9n"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; + compareGroups = derive2 { name="compareGroups"; version="3.2.4"; sha256="0lg54vyg8jpf98bwqxzbnfiykx2l5dccdw1m48dbkncgkhm388lk"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; }; compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; }; compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; }; compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; }; compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; }; - complexity = derive2 { name="complexity"; version="1.0.0"; sha256="15wdlrc8ng1zxgp3gi8d1zfy366mv9m4p643ia7vdcgqv3icq7fc"; depends=[combinat]; }; + complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; }; complexplus = derive2 { name="complexplus"; version="2.0"; sha256="05b36gql6fqcairwpxvis9vllpvmpgv6rg69zd8vabl5xsgv8q44"; depends=[expm Matrix]; }; complmrob = derive2 { name="complmrob"; version="0.6.1"; sha256="1dr80r1p05h3mlnjbgh6kfw86np8y2bhy9yi5qydv85w52k133n1"; depends=[boot ggplot2 robustbase scales]; }; compoisson = derive2 { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; }; compositions = derive2 { name="compositions"; version="1.40-1"; sha256="1hn139g86bc1q3dj6kj9f21042v4x0xgrp4ni1zvx1zx8xmy3h8b"; depends=[bayesm energy robustbase tensorA]; }; - compound_Cox = derive2 { name="compound.Cox"; version="3.2"; sha256="028mpal6gdrxgw08hxhsl4yvc9plj0bvndb48fyrzpj8kmk5dibv"; depends=[numDeriv survival]; }; + compound_Cox = derive2 { name="compound.Cox"; version="3.3"; sha256="13gqc094c3sx52qx4yvk3la6qs31rgrpm8l6asysn4jp0q6hqgqq"; depends=[numDeriv survival]; }; compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; }; + comtradr = derive2 { name="comtradr"; version="0.0.1"; sha256="03pic8ld3bbzd415hxxsx3dq520az1byqbp7v08ks64nz5whmplw"; depends=[dplyr httr jsonlite]; }; concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; }; conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; }; concor = derive2 { name="concor"; version="1.0-0.1"; sha256="0hjyvi6p16cyrmq0bq7fph1r5f3adp7zpf123wkm5bkjnc5122k0"; depends=[]; }; @@ -4314,14 +4427,15 @@ in with self; { confSAM = derive2 { name="confSAM"; version="0.1"; sha256="00l4hk0n63p3gdv6hpxqkkn3nw4rgw77rpwzn2k8fgq53ja44yfg"; depends=[]; }; confidence = derive2 { name="confidence"; version="1.1-0"; sha256="11y2mjh9ykmsgf6km6f2w5rql1vqwick4jzmxg5gkfkiisvsq1cp"; depends=[ggplot2 knitr markdown plyr xtable]; }; config = derive2 { name="config"; version="0.2"; sha256="1p0gaqrqhcrdkp5cr3rn4i5ny8mr96b3q1fwgs0i8lk5riljkk20"; depends=[yaml]; }; - configr = derive2 { name="configr"; version="0.1.0"; sha256="0yajq3c9j22p3llkhla2x6mmphmpi4l1wshyyn1sv1fczldijvzc"; depends=[ini jsonlite RcppTOML yaml]; }; + configr = derive2 { name="configr"; version="0.2.1"; sha256="0b5mkhnnlpp1m3b4gflyn4n1pdr21f10jpx8kbw2dhjd3imbdq0s"; depends=[ini jsonlite RcppTOML stringr yaml]; }; + confinterpret = derive2 { name="confinterpret"; version="0.1.0"; sha256="1rl742pf6lz48q3sq8c57fp45zdh90kx3wx0zmq63ic18ql1hg51"; depends=[]; }; conformal = derive2 { name="conformal"; version="0.2"; sha256="13d8yv8l333n3m8kl2sdnd0m5b7gjixkqjlpfj312fk9nxvqdbcg"; depends=[caret e1071 ggplot2 randomForest]; }; confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; }; connect3 = derive2 { name="connect3"; version="0.1.0"; sha256="07ih875ynrxzynj989d0h469ilq6c634z2z3igvxpkx40wr451d5"; depends=[]; }; - conover_test = derive2 { name="conover.test"; version="1.1.2"; sha256="063a43v6f8hknaph78b92aqhwv6nfzsd029j4gqs2087lyqdk2ap"; depends=[]; }; + conover_test = derive2 { name="conover.test"; version="1.1.4"; sha256="1dscb0rwwvl83ag4lbn13bxnn9apv3dkr37q8qr5i4diahcva17c"; depends=[]; }; constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; contfrac = derive2 { name="contfrac"; version="1.1-10"; sha256="10mw75aznwbhi4kj8s7hyisgxnb4rv8pggcs8zdbmq22w7ql2rd7"; depends=[]; }; conting = derive2 { name="conting"; version="1.6"; sha256="0hyg1nj89i780mf1fgmrfiv5gl5nzlar8i1zy8fsim73cw9y39fm"; depends=[BMS coda gtools mvtnorm tseries]; }; @@ -4331,14 +4445,14 @@ in with self; { convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; }; convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="1.0"; sha256="05nhpndixvrmiq5paswj7qwsq3k3al34q3j751bic4kb8zhby3fk"; depends=[ape cluster geiger MASS phytools]; }; - convey = derive2 { name="convey"; version="0.1.0"; sha256="0qv8v5mfnzgyyiyx2yhmkmqscnf1q8i2p2hvhhx5y1ix045an93x"; depends=[survey]; }; - convoSPAT = derive2 { name="convoSPAT"; version="1.1.1"; sha256="17j5a5nppslx2rwg2grdz8ihhy0ryjlhrqar1yq7jknmrss3jlpv"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; + convey = derive2 { name="convey"; version="0.2.0"; sha256="1sngpp769q13lp3ykk510di2iq06i7fc79z6mhdivmlw3pf40lcb"; depends=[survey]; }; + convoSPAT = derive2 { name="convoSPAT"; version="1.2"; sha256="1qxn9kwxbl1qvhdn4xfky9lc7qvg9v8qgmd1wvbz2b6yc0wvhxia"; depends=[ellipse fields geoR MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; }; coop = derive2 { name="coop"; version="0.6-0"; sha256="1q38kawck0625fyxmh7a0cya5yyhv9ds53q1l0h03vrappq5amxv"; depends=[]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; copBasic = derive2 { name="copBasic"; version="2.0.5"; sha256="0xijw9abqkljacwnblyncjkpaj178s9kq8jazxb39v4qk8pmvq6c"; depends=[lmomco randtoolbox]; }; - copCAR = derive2 { name="copCAR"; version="2.0-1"; sha256="1mvbarzq409lkf7sd6s4adf2cgvmby7f1yg35x83bp1sc8529kz8"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; + copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; }; cope = derive2 { name="cope"; version="0.2.3"; sha256="1r02nb6wy25ixhdcbqqz167s7ny3hydpxfxry5ar4136qvcamgyy"; depends=[abind fields maps MASS Matrix mvtnorm nlme]; }; coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; }; copula = derive2 { name="copula"; version="0.999-16"; sha256="0mnhp5jhrbynnkdf9cmxzd5kqg8zvdrwldy8pn7sdjq18xq6qawa"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; }; @@ -4354,15 +4468,17 @@ in with self; { corehunter = derive2 { name="corehunter"; version="3.1.0"; sha256="1q5bmzkmm8fzdnbj8s8mi0jxmrqp6ps14m1fm0c3frlqj3fy1ngm"; depends=[naturalsort rJava]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; }; - corpcor = derive2 { name="corpcor"; version="1.6.8"; sha256="0gnwqzfhxhxy7zxjzgga9l2npn588jjavqlmv9dag7ciq1kxmzk9"; depends=[]; }; + corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; }; + corpus = derive2 { name="corpus"; version="0.2-0"; sha256="1cgk3j6wsdxh310yka6r4nnvnnx15jlibnk0s7w2cw5rr2b5pwxp"; depends=[]; }; corr2D = derive2 { name="corr2D"; version="0.1.12"; sha256="06jhcb4sr9mz06pc8jjrpl1qhxjp4bacal3hgy1k76lfbayxn7fv"; depends=[colorspace doParallel fields foreach mmand rgl]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="0.1.4"; sha256="09gkxl5bmshsg8j9manvpwzy88djqqi8xrdhbmq6azk3g3lr70rp"; depends=[ellipse gplots rgl]; }; - corrgram = derive2 { name="corrgram"; version="1.10"; sha256="065l93pdz3bms1b9qkcqhyi0j2bh4firl35rnfkajqbz5i3v8q55"; depends=[seriation]; }; + corrgram = derive2 { name="corrgram"; version="1.11"; sha256="13znr4gqj6pnilqpw0ypc8zjk259gm06pribr3sz9bnrkpr6pcfc"; depends=[seriation]; }; corrplot = derive2 { name="corrplot"; version="0.77"; sha256="1lr873lqg4zdjccf9g8a1fbvvdbvyb30j980ygiyxwpajpwnzdjl"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.2.1"; sha256="1d04nk92fjmk4kc5zipjqjhhmb1w97kid7l2jz5a8pkwiccn5byc"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr seriation tibble tidyr]; }; corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; + corset = derive2 { name="corset"; version="0.1-3"; sha256="1bx8dzxyvvi9cc2vql1whlnva8n3af8jsglyzh77jzrrqk78rkh1"; depends=[]; }; cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; cosso = derive2 { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; }; @@ -4370,6 +4486,7 @@ in with self; { cotrend = derive2 { name="cotrend"; version="1.0"; sha256="0h0y502wqq83wlf9ab1b9rxg1wycvi3sp4lbqfpvy46vgljrjw87"; depends=[xts]; }; couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; }; countrycode = derive2 { name="countrycode"; version="0.19"; sha256="0cgv8sds01figs5dsm1gga2py2nzf3a3xrlkmblal52xxpng2jf8"; depends=[]; }; + countyfloods = derive2 { name="countyfloods"; version="0.0.1"; sha256="0m9vhsqksr6wprxmvg0cmvyfmmv92a4icak89pv9lmsqmvy5q3ca"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; }; countyweather = derive2 { name="countyweather"; version="0.1.0"; sha256="0q56bnh9x6jyj1sdd1q4yv2n774mbv268pgp285bjybgqm2pyisz"; depends=[dplyr geosphere ggmap ggplot2 lubridate purrr raster rnoaa sp stringi tibble tidyr tigris]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; @@ -4397,12 +4514,13 @@ in with self; { cplexAPI = derive2 { name="cplexAPI"; version="1.3.3"; sha256="1li5sbakkq8hrgwsa4i1qa5bdjj6vm6s9sq23ccknbb8bxp4zmwv"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-5"; sha256="16li79x2zyydi7gi4n8k09g9x2n1dgd9av3nqjnb0by3v31c44n0"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.2"; sha256="1n1iqhalp99mbh8jha0pv759fb97sqxdiiq9bxy3wm6aqmssvdb1"; depends=[]; }; + cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cpt = derive2 { name="cpt"; version="0.9"; sha256="03nvxkwwvqmzpphax4zfij6jvh26x4bsl3mn2xr4mbr7cjb2x12w"; depends=[MASS nnet randomForest]; }; cqrReg = derive2 { name="cqrReg"; version="1.2"; sha256="1sn8pkbqb058lbysdf2y1s734351a91kwbanplyzv3makbbdm4ca"; depends=[quantreg Rcpp RcppArmadillo]; }; cquad = derive2 { name="cquad"; version="1.3"; sha256="1r6g3yp3vvm8d5351lan4im1bmir38d4l9cf8bw0ay7as33ny3x9"; depends=[MASS plm]; }; crackR = derive2 { name="crackR"; version="0.3-9"; sha256="18fr3d6ywcvmdbisqbrbqsr92v33paigxfbslcxf7pk26nzn2lly"; depends=[evd Hmisc]; }; cramer = derive2 { name="cramer"; version="0.9-1"; sha256="1dlapmqizff911v3jv8064ddg8viw28nq05hs77y5p4pi36gpyw4"; depends=[boot]; }; - crandatapkgs = derive2 { name="crandatapkgs"; version="0.1.5"; sha256="113apslycwdgyx18gxbamz235267h2v9b4r2d3pakw38sh74z3qz"; depends=[]; }; + crandatapkgs = derive2 { name="crandatapkgs"; version="0.1.7"; sha256="1kxh5ixhwv4fm78x6kzpwyzdgs7xzcx0k321zvkg5l46k3wybg6g"; depends=[]; }; crank = derive2 { name="crank"; version="1.1"; sha256="117sgq7zm5wxmd97sfc927qq70snra6vd090mhpcsdhipw1py6zc"; depends=[]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; @@ -4412,13 +4530,14 @@ in with self; { crch = derive2 { name="crch"; version="1.0-0"; sha256="1wd9hwr68qlinaw23lckjizq5g67v74wc3v6ig1rxrxyssyzag68"; depends=[Formula ordinal]; }; creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; }; credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; }; - cricketr = derive2 { name="cricketr"; version="0.0.13"; sha256="1nj72avz1m12nn3kyiy4msrvrwhdxl0mywc22wwc6j9dq7v7gh18"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; + cricketr = derive2 { name="cricketr"; version="0.0.14"; sha256="0vziyagx594d0k44c53z720vwb1hflcxb7m898l5vfds8jsi6mhv"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.3"; sha256="1p2cma78fb9a2ckmwdvpb6fc0818xw2mvq565dgiimgkdmmr0iid"; depends=[]; }; crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crmPack = derive2 { name="crmPack"; version="0.2.0"; sha256="1bgy3bfsasjppd0gf9yxrfyc1glzqpgdfpl9kv2lv34xbywwad05"; depends=[BayesLogit GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmn = derive2 { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; }; crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; + cronR = derive2 { name="cronR"; version="0.3.0"; sha256="0nyjgxgvasqv8g9cvkzii0jsr15x5i76waz5hzzsjar5mwq6vq8h"; depends=[digest]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; }; crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; }; @@ -4435,8 +4554,8 @@ in with self; { crskdiag = derive2 { name="crskdiag"; version="1.0.1"; sha256="0100wbyvchx6jwlrwc6rwhdjanips5c0f5zqzs2c0dgwygpqw30w"; depends=[cmprsk]; }; crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; - crul = derive2 { name="crul"; version="0.3.0"; sha256="1a59zb2ifxg59yzjyf1gq4fk0vqvc0alvifpn2rssis8jyr6g7wr"; depends=[curl httpcode mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.15.0"; sha256="0ylkp861dy8qa03pjl6znf2mgknhnf3wfyby01zjzrwak2pixi5n"; depends=[curl httpcache httr jsonlite]; }; + crul = derive2 { name="crul"; version="0.3.4"; sha256="14dc5vs1h5rwd373ibh1dndxgx3h3i2zg5d38i43j0ffqsbiyrl2"; depends=[curl httpcode mime R6 urltools]; }; + crunch = derive2 { name="crunch"; version="1.16.0"; sha256="19iw8vpqxlanm4z2cwpnh500zkdb3j8wc7qvppkdv2b4a5cy33lq"; depends=[curl httpcache httr jsonlite]; }; cruts = derive2 { name="cruts"; version="0.3"; sha256="0yn6xc2wg23nkjnsb7kii7dn897wf4ymnpmgppacrsznl8mmlmgd"; depends=[lubridate ncdf4 raster sp stringr]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; @@ -4454,12 +4573,12 @@ in with self; { csvy = derive2 { name="csvy"; version="0.1.3"; sha256="0vszbxqa88sdsi73wng4y8zxhrvcksqa6qs3rbh50c2nll8r8kb3"; depends=[yaml]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; }; - ctmcd = derive2 { name="ctmcd"; version="1.0"; sha256="1qv2r7myrvr0a5gcrs6bi46dm4kicyyn95rkr6qyvvdnz2i2mhqm"; depends=[expm numDeriv Rcpp RcppArmadillo]; }; - ctmcmove = derive2 { name="ctmcmove"; version="1.2.7"; sha256="1bhzwh1hhfda49p52ixvicx2mbca28mhnhh4h6nvm2i3m72dkfrq"; depends=[fda gdistance Matrix raster sp]; }; + ctmcd = derive2 { name="ctmcd"; version="1.1"; sha256="05r04bxd1n866rcizjgw1267ms8zdcpny3i1vycrk31ja953fs0a"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; + ctmcmove = derive2 { name="ctmcmove"; version="1.2.8"; sha256="16qi4y3ivcys2dfixm4vzyqbqbm2j1gc1l4bjrrp46c268qja2z3"; depends=[fda gdistance Matrix raster sp]; }; ctmm = derive2 { name="ctmm"; version="0.3.5"; sha256="0lg3mrwdsphwj1c0r4655a1glk49p0y60rd1w11jvz16y6r6j59b"; depends=[expm manipulate MASS numDeriv pbivnorm raster rgdal scales]; }; ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; }; cts = derive2 { name="cts"; version="1.0-20"; sha256="0bsf52b98fji85j01qv0krc7yzr8mqhvn7w1zsy2rbanjmlwmnca"; depends=[]; }; - ctsem = derive2 { name="ctsem"; version="2.2.0"; sha256="0gi2lh9wyl0bl1dhlmifciyj4f0xffxqswhhcrybff5dv7bip3nv"; depends=[Matrix OpenMx plyr rstan]; }; + ctsem = derive2 { name="ctsem"; version="2.3.1"; sha256="0wgy0a39y7blmzynwqxq7vqi16rfrqcyy1hyzw1qwxfsgznpf1ws"; depends=[Matrix OpenMx plyr Rcpp rstan]; }; ctv = derive2 { name="ctv"; version="0.8-2"; sha256="0xpxxkn6x26vmdkd2hkn8afyn95q2yg4kl5i989dipqzxc47fbrv"; depends=[]; }; cubature = derive2 { name="cubature"; version="1.3-6"; sha256="0ck9lrk39pnb3piz5dpgsbkbcppx7hq61c3hpjk5mcacgxnd8jvy"; depends=[Rcpp]; }; cubfits = derive2 { name="cubfits"; version="0.1-2"; sha256="07phnpgag68ss08qyzhj2g1s084w0cc583a30i09c82ql9j3gbpk"; depends=[coda foreach]; }; @@ -4469,11 +4588,10 @@ in with self; { cumSeg = derive2 { name="cumSeg"; version="1.1"; sha256="01hn3j1i7bi2r9vsqwbgy1f1alcisxyf4316xx57bg82lb34d0s5"; depends=[lars]; }; cumplyr = derive2 { name="cumplyr"; version="0.1-1"; sha256="07sz1wryl3kxbk67qyvnkrkdrp4virlsaia0y6rf9bqdw7rc6vi2"; depends=[]; }; cumstats = derive2 { name="cumstats"; version="1.0"; sha256="119w751z9dg6pjyk389pbl8ab8pirf9sqndi4nxi89ix2bby4xz8"; depends=[]; }; - curl = derive2 { name="curl"; version="2.3"; sha256="0gbw5l0wnsw26fbr08gj9vgxrzxg8axvqxfshmd8g9khpgbdl0gr"; depends=[]; }; - curlconverter = derive2 { name="curlconverter"; version="0.7.0"; sha256="03nv3kkw171qxafy0acbfs7kxaz89i1l7jyi3n46f5fapks4vx4x"; depends=[clipr curl formatR httr jsonlite magrittr purrr stringi V8]; }; + curl = derive2 { name="curl"; version="2.5"; sha256="09p86i5f88gx1i7cidm1ka56g0jjkghqfam96p1jhwlh2fv6nrks"; depends=[]; }; currentSurvival = derive2 { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; }; curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; - curvHDR = derive2 { name="curvHDR"; version="1.1-0"; sha256="0cymz4i29sih9z5hkih86db41x39kzzm9vq1374rfxz26l2c00xy"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; + curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curvetest = derive2 { name="curvetest"; version="2.2"; sha256="1lz6rx9fmgyrlci1dyanscp2a18ki9lhrwnrzhp062flysffimg6"; depends=[locfit R_methodsS3 R_oo]; }; cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; }; @@ -4497,8 +4615,9 @@ in with self; { cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; + d3Tree = derive2 { name="d3Tree"; version="0.1.0"; sha256="10nwssxx342d2hhr1iawd8p8jd273ywl3rlp7wm2cp7m73m2azil"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.1"; sha256="0xx1lpp9qpkqh991ib0l9z1wn6j67jnggrhq5gr5sm63m7sjijwn"; depends=[base64enc dendextend htmlwidgets png scales]; }; - d3r = derive2 { name="d3r"; version="0.6.2"; sha256="0abxv8ld6zzkajqkiz0dv61axw3yak4arpw8ar43dypg1ar5cbmm"; depends=[dplyr htmltools tidyr]; }; + d3r = derive2 { name="d3r"; version="0.6.3"; sha256="0q0m3m97ban9aywwb37n0jbnd0sjy8132g4253nz713gawz11rav"; depends=[dplyr htmltools tidyr]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; }; dGAselID = derive2 { name="dGAselID"; version="1.0"; sha256="0b8n2kkpyqia6kpmgdi93917xf23r9aya33030iyk2wn18642qdj"; depends=[ALL Biobase genefilter MLInterfaces]; }; @@ -4526,20 +4645,20 @@ in with self; { dataQualityR = derive2 { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.6.3"; sha256="1bgjn5j0kcd9ysi12pyqygv96vcd0ld67ika9z46lcx9n99zq35d"; depends=[curl dplyr httr lubridate readr reshape2 xml2]; }; datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; }; - datacheckr = derive2 { name="datacheckr"; version="0.1.2"; sha256="1z9r7f82rl6x63bl6mcvdvb0pbc6n0202vn9hh0lqf86qz30q7dp"; depends=[dplyr magrittr]; }; + datacheckr = derive2 { name="datacheckr"; version="0.2.0"; sha256="1kk38pb4dsy6ll6drz2gsngzsv81pwmjrbvh3izm22h849mvlypv"; depends=[]; }; datadr = derive2 { name="datadr"; version="0.8.6"; sha256="0fmywnxcvw31vfb9iaxqiw19ycnd98v41pdsdknabysr7fpnygfq"; depends=[codetools data_table digest dplyr hexbin magrittr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.2.1"; sha256="0hlvnnn3gs73m6gryr6ngmd9sdlamwmdmac3fawbbyna2if5b77n"; depends=[assertthat downloader dplyr httr jsonlite lubridate readr]; }; dataone = derive2 { name="dataone"; version="2.0.1"; sha256="0n1c87wb15q7ysz0q5r69g57hk0vpd66m0w9wjbcjlyfn8whqa08"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; }; - datapack = derive2 { name="datapack"; version="1.0.1"; sha256="1ka4yxggdm9yify4vdbsrnxarjx0yab4p94xyzks72xqn6kpwarg"; depends=[digest hash redland uuid XML]; }; - datapasta = derive2 { name="datapasta"; version="1.1.0"; sha256="0cvcb074blc35kl709s6gpii353pfn1biscl5d9jma4ad9i0fi5a"; depends=[clipr readr rstudioapi]; }; - datarobot = derive2 { name="datarobot"; version="2.4.0"; sha256="1whlzakr01v5wrzv4fmpzml5xdk1vk48mmnhnh41hycxgssvlp04"; depends=[httr jsonlite yaml]; }; + datapack = derive2 { name="datapack"; version="1.2.0"; sha256="1pyl52r6lbwvr96k8qjnz16l1v3hw80jcbh2ciaa9sld42ds6kgq"; depends=[digest hash redland uuid XML]; }; + datapasta = derive2 { name="datapasta"; version="2.0.0"; sha256="100nqw315xdzxpzn1gmx4881zli4lwzwckdvqjciysv4l5gvzzfm"; depends=[clipr readr rstudioapi]; }; + datarobot = derive2 { name="datarobot"; version="2.6.0"; sha256="1dnps3hdyz468i7jx2idary2dbphyy6j178n8ba37dvjf5pnhnbw"; depends=[httr jsonlite yaml]; }; dataseries = derive2 { name="dataseries"; version="0.1.0"; sha256="1z2hvksk9c9rnwi0r2i61sbkiwk3g2q8knxh08w6wkj9864payhw"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; }; datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; - datautils = derive2 { name="datautils"; version="0.1.4"; sha256="0adg87p9rzz62cm0s80x71mhsg3yfg93gskv1hs1l8gaj78zd1y1"; depends=[deldir gplots gtools]; }; + datautils = derive2 { name="datautils"; version="0.1.5"; sha256="1yy25a84zmfh54jvxwa7mv4j296rmjgd40m4p81mrsswlqvncmfn"; depends=[deldir gplots gtools]; }; dataview = derive2 { name="dataview"; version="2.1.1"; sha256="1nn33h5c1h4a3zm1xm7sdz4s6sy0f3r53jhm7bv6qk7aiylwqf6v"; depends=[data_table xtermStyle]; }; date = derive2 { name="date"; version="1.2-37"; sha256="0321kqvpy5cvl8hmm6pd0pyjpi30glm8hvw60mrql6y28sn6pqhl"; depends=[]; }; dave = derive2 { name="dave"; version="1.5"; sha256="0sw9hc4y9wdfbnnk6isg7z7sky6ni68pkjxdlrph5m7jcyqphz96"; depends=[labdsv vegan]; }; @@ -4551,9 +4670,10 @@ in with self; { dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; }; dbhydroR = derive2 { name="dbhydroR"; version="0.2-2"; sha256="06m1llg1il0v4v8yi62z26hglzrhzw009y81xpb9zaphcviqp2qr"; depends=[httr reshape2 XML]; }; dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; }; - dbmss = derive2 { name="dbmss"; version="2.3-0"; sha256="02dmm7djm4k5c9cz0dcs5fkdnld6xmj110619yry2z307irdqamk"; depends=[cubature Rcpp RcppParallel spatstat]; }; - dbscan = derive2 { name="dbscan"; version="1.0-0"; sha256="0yqng42d7nl4x2qnkpvv5cj426gzdx872gcwfblys73hw20v09ky"; depends=[Rcpp]; }; + dbmss = derive2 { name="dbmss"; version="2.4-0"; sha256="0rxldlyrwfbpmvgmqzmzifflnc7hv2dv62fmhqihvac7ya1h2rx8"; depends=[cubature Rcpp RcppParallel spatstat spatstat_utils]; }; + dbscan = derive2 { name="dbscan"; version="1.1-1"; sha256="09rh3x4g3xv5f1p8wbc847z8khj7v2r5vz9yf1lfdiy23q2w3xp1"; depends=[Rcpp]; }; dbstats = derive2 { name="dbstats"; version="1.0.4"; sha256="1miba5h5hkpb79kv9v9hqb5p66sinxpqvrw9hy9l5z4li6849yy1"; depends=[cluster pls]; }; + dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; }; dclone = derive2 { name="dclone"; version="2.1-2"; sha256="0s3s46hvlsivfhrc559y0b3dc5m6g11cv3fwy4asigh8lqjc972d"; depends=[coda Matrix rjags snow]; }; @@ -4594,15 +4714,16 @@ in with self; { demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; }; deming = derive2 { name="deming"; version="1.0-1"; sha256="00v59qb6qwbwsvcwi59d0c0g3czfz1190ccj4dx6yarizr4g6cy8"; depends=[boot]; }; demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; }; + demogR = derive2 { name="demogR"; version="0.5.0"; sha256="1y7pkf1m8fqjsvs0szyaqga2y7p3dvj0r85nz8nzqbmy4zrrv4w8"; depends=[]; }; demography = derive2 { name="demography"; version="1.19"; sha256="08cfvsvv6ayxy93vihavyb3lddgwfdlwrb2x4is5fxids79lpm9x"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; }; - dendextend = derive2 { name="dendextend"; version="1.4.0"; sha256="0piqa8jvzarkkxmrv8hz11gg1jzm75b2fbrmd3nkwv4fcjlzpa0x"; depends=[fpc ggplot2 magrittr viridis whisker]; }; - dendextendRcpp = derive2 { name="dendextendRcpp"; version="0.6.1"; sha256="125kjlfcj7y282j5g62c6j5hflvwngrm70waxym0lzr7xldwx7bk"; depends=[dendextend Rcpp]; }; + dendextend = derive2 { name="dendextend"; version="1.5.2"; sha256="04jz58apibfrkjcrdmw2hmsav6qpb5cs6qdai81k1v1iznfcya42"; depends=[fpc ggplot2 magrittr viridis whisker]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.1"; sha256="0k1w374r4fvfcbzhrgcvklccjggyz755z7wc2vqfi3c5hvdb9ns4"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.3"; sha256="1m4qh79ppfvipmbi8m8vwq0hqmwwipbg5izihz5j6x8a4g5i6iym"; depends=[]; }; denoiseR = derive2 { name="denoiseR"; version="1.0"; sha256="094nknr3hyx4kv18vnpdzrcpmfb4r7x9jgrp3p6x4nwrgzdh3r95"; depends=[FactoMineR irlba Matrix]; }; denovolyzeR = derive2 { name="denovolyzeR"; version="0.2.0"; sha256="03ya5clzqp12lfhw073ri0pwgxn53a6pvnais317a8bv1yinxspb"; depends=[dplyr reshape2]; }; denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; }; + denseFLMM = derive2 { name="denseFLMM"; version="0.1.0"; sha256="0sckr9r2wylncpsq5yz2vww35imcc0zw8ghz8prqw2n20233gqj1"; depends=[MASS Matrix mgcv mvtnorm]; }; densityClust = derive2 { name="densityClust"; version="0.2.1"; sha256="0blq6h6x071bcy3shr77b3bwq1im0013vbg7gckdhljm859n07bh"; depends=[Rcpp]; }; densratio = derive2 { name="densratio"; version="0.0.3"; sha256="07da5spbzr8x7sv6pdknc64a5zhs3dgnpcx4s2v68vc31xsd0gqd"; depends=[]; }; denstrip = derive2 { name="denstrip"; version="1.5.3"; sha256="10h8ivs7nd6gkf93zvqzqjb1lzfabvvs182636m67f86jfn6d4y4"; depends=[]; }; @@ -4631,18 +4752,18 @@ in with self; { detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; detzrcr = derive2 { name="detzrcr"; version="0.1.3"; sha256="1j0x3175d0fllf0f4csgdi86p69ichk5wvhr5nbyzga3f034c87h"; depends=[ggplot2 MASS shiny]; }; - devEMF = derive2 { name="devEMF"; version="3.3-1"; sha256="1s0rmw3gsyj28ywlkfdjr98fr7cjhmzb0fq5qn9s91dw9a3fx8zf"; depends=[]; }; + devEMF = derive2 { name="devEMF"; version="3.4"; sha256="1h95hdjasmb3imvkcrlq48mckaq9wkcxk8gvq13sra91lrv9cgjz"; depends=[]; }; devRate = derive2 { name="devRate"; version="0.1.1"; sha256="088i9m9ys59p2a961183ac2w6wa0idb4xvyfnxqz9rpiins8d0bg"; depends=[]; }; devtools = derive2 { name="devtools"; version="1.12.0"; sha256="1m5g6xnq7r4s3a0nlpa88fp5x6c8nl5icnp4869y5zwdk2ijqgla"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; }; dexter = derive2 { name="dexter"; version="0.1.7"; sha256="1bpj6izqgp4mi9h4kpm9xhnm8h6j9lvdizr31w51ljs8lkphzpwd"; depends=[colorspace plyr reshape2 RSQLite]; }; df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; }; - dfcomb = derive2 { name="dfcomb"; version="2.1-6"; sha256="14jyagnrsbzdwcfy0z6c9gwbv40xrnany43ylpks6qgnq4rya7a2"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfcomb = derive2 { name="dfcomb"; version="2.2"; sha256="1a7z7c2shmmnfgrdmwph2b3xa7r05c1x1nrhjvbl5fljcvlwg7q9"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfcrm = derive2 { name="dfcrm"; version="0.2-2"; sha256="1kwgxfqnz2bcicyb27lp6bnvrj30lqjpn5fg7kaqshgkj53g0s4f"; depends=[]; }; dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; - dfmta = derive2 { name="dfmta"; version="1.3-4"; sha256="18lmgpv6jhjs15difiq0jck6kf898ngr2g13wrf3y5s5xc70iwkp"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfmta = derive2 { name="dfmta"; version="1.4"; sha256="0ihn5hdg2drvfzf9l8ybsry466m1gym4y99217swg17jn8m6z6r0"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoptim = derive2 { name="dfoptim"; version="2016.7-1"; sha256="1hs0ln5iz3h1x1b27jai83r3gad6698zwhr2jgpviiv9zwhic8c2"; depends=[]; }; dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; }; - dfpk = derive2 { name="dfpk"; version="2.0.0"; sha256="0nn0m4kvjsyv48xribkab0jnbv0db17aan9flnkg5jh4s03pg9sc"; depends=[BH dfcrm ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; + dfpk = derive2 { name="dfpk"; version="2.1.0"; sha256="0favm57farip4kp8ywy2ps446pkv5mp6ydiyxvn7pix7rv2ww5rl"; depends=[BH dfcrm ggplot2 Rcpp RcppEigen rstan StanHeaders]; }; dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; }; dggridR = derive2 { name="dggridR"; version="0.1.11"; sha256="179pi20rs0mp5aqydhw34wczrkyavndaaccjr017gp456gza1a83"; depends=[dplyr ggplot2 rgdal]; }; dglars = derive2 { name="dglars"; version="2.0.0"; sha256="0nhljv02cfsna4d220nhla4fs84hr30qs9j32mml0brnmazyjj0n"; depends=[Matrix]; }; @@ -4683,16 +4804,17 @@ in with self; { dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; }; diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; }; directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; }; - directlabels = derive2 { name="directlabels"; version="2015.12.16"; sha256="0vi9zbc2sa8fpi2n2ax1ni9f8s9w1hc0f6gahk8fcrmnagj4g089"; depends=[quadprog]; }; + directlabels = derive2 { name="directlabels"; version="2017.03.31"; sha256="01ahw0c56mnzwl611s8hnghicww4c4dgf5v2wv6bl1s1pramw9pr"; depends=[quadprog]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; - discSurv = derive2 { name="discSurv"; version="1.1.5"; sha256="0lbzaalh1jack49px47sqsmpwmv14w4h1y2r9k294921d02zl0w5"; depends=[functional mgcv mvtnorm]; }; + discSurv = derive2 { name="discSurv"; version="1.1.7"; sha256="0shxwxbvbbgp0qphpbih582d5psqj5n0izv7zvcw97vh82bzra4l"; depends=[functional mgcv mvtnorm]; }; discgolf = derive2 { name="discgolf"; version="0.1.0"; sha256="15bk2k7glahcbz4kyl3fiayi7ck6z3wabl9y25fg6cnxkbyh6dbn"; depends=[httr jsonlite xml2]; }; disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.6.2"; sha256="01pn8hy3xbf1b1fbbsd4n2hv7gs97zalgq858xsrr4a0nqrvxmn5"; depends=[cluster disclap Rcpp]; }; + disco = derive2 { name="disco"; version="0.5"; sha256="1rjylqmijc8yg20hkhqh24asxzs2g55dgbh4scp60nsf2lnw1pz8"; depends=[ggplot2 RColorBrewer tmod]; }; discreteMTP = derive2 { name="discreteMTP"; version="0.1-2"; sha256="13qsf1kc3rph0kkdkz31qj072www5dwjyk73lfpy141rzhcn1v1x"; depends=[]; }; discreteRV = derive2 { name="discreteRV"; version="1.2.2"; sha256="1lhf67cccr96zl3j1sysh2bv0pbgvkbgjdzm35fvrdm7k74ypjsi"; depends=[MASS plyr]; }; - discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.2"; sha256="1rdcwlp6m08fjvw54f4m07ahdx1vh1wdzxpai79kchgxp0i9np9g"; depends=[Rcpp RcppEigen sparsebnUtils]; }; + discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.3"; sha256="05mbz5iw2234nq3agiwn25pzlq63l4jzj1dpr9h37xaryg1qscjr"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; discrimARTs = derive2 { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; }; diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; }; @@ -4702,14 +4824,15 @@ in with self; { disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.1"; sha256="141gzhnmxxl495cpjgd4wnvdrbz6715m6sd1pycrbaqrsdc1pv57"; depends=[]; }; - disposables = derive2 { name="disposables"; version="1.0.1"; sha256="1gmmf34hq8vm2gjg1560hkarppxmzakymgjbpzbpy2j471kd9s7a"; depends=[]; }; + disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; }; + distances = derive2 { name="distances"; version="0.1.0"; sha256="0hhjvi08bv84x5b6baiycvnl94nc0p8q6ljghzvgfrsadgbyjnf9"; depends=[]; }; distcomp = derive2 { name="distcomp"; version="0.25.6"; sha256="0qp9lsi1mb9amcs8wfhzrsqv92lrl3k3glskmvvj75cqy5kwi3az"; depends=[digest httr jsonlite R6 shiny stringr survival]; }; distdrawr = derive2 { name="distdrawr"; version="0.1.2"; sha256="1i1rkkic3kz2cs7fq4sb7zfr6s4wini8g1851yxzs9bjgqpsch1d"; depends=[]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.0"; sha256="13y714l6b3kkpp75fdrsbdclgj1vw1xsvbj9pxi4lkwf11wwmrqr"; depends=[]; }; distillery = derive2 { name="distillery"; version="1.0-2"; sha256="12m4cacvc18fd3aayc8iih5q6bwsmvf29b55fwp7vs8wp1h8nd8c"; depends=[]; }; - distory = derive2 { name="distory"; version="1.4.2"; sha256="12j19cb1b4prm8m43gya15kia1ii1k0yy7hkngpn2vsyk7n2z65m"; depends=[ape]; }; + distory = derive2 { name="distory"; version="1.4.3"; sha256="1mszk8fv1z46d7y1q37mhq9b5yk39w2i9rq6mgdf03afdslrmrip"; depends=[ape]; }; distr = derive2 { name="distr"; version="2.6"; sha256="0f2y3ycng2chbhas0bq8zqp314lsm8c39chxpg40dcfq0f1z3rmk"; depends=[MASS sfsmisc startupmsg SweaveListingUtils]; }; distrDoc = derive2 { name="distrDoc"; version="2.6"; sha256="19yjns5cv2jp551kbld30xmdzljxr0lj5gps0lxfv8d7mrj09kf7"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; }; distrEllipse = derive2 { name="distrEllipse"; version="2.6.2"; sha256="1rhpnwsml7vs2nkn4q4203fi0qwfc4pxgva0b4z30zzhywb0p3hg"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; @@ -4721,11 +4844,11 @@ in with self; { distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; }; distrom = derive2 { name="distrom"; version="0.3-3"; sha256="1kpbrsa7ml72zvmdcpbbz2rsv4lpqd5i2w3v488ji6nbi44v1gp6"; depends=[gamlr Matrix]; }; divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; }; - diveMove = derive2 { name="diveMove"; version="1.4.2"; sha256="0j761js14ip6spxm6xz9lwyc6zv094bylp1lq487pkgwwcakqs0k"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; - diveRsity = derive2 { name="diveRsity"; version="1.9.89"; sha256="0f75dak14x9x9xs6ql9686n6w1f0w5g6h5ya983mg547f1zzbw9m"; depends=[ggplot2 qgraph Rcpp shiny]; }; - diverse = derive2 { name="diverse"; version="0.1.4"; sha256="0c5a2ippnygyny9bkqk8s9vywq5207nss0ikywgji8ld0zvxsmi6"; depends=[foreign proxy reshape2]; }; - diversitree = derive2 { name="diversitree"; version="0.9-9"; sha256="00dzw9fpcdgfvf7jl3lr2a2gpfd8pr17myih04v5hkxpjmsydawp"; depends=[ape deSolve Rcpp subplex]; }; - divest = derive2 { name="divest"; version="0.2.0"; sha256="0yhk83dmwkii1w355vqmcn4wsm3k8npm4v8wsf6knvqrszh6zh0s"; depends=[Rcpp RNifti]; }; + diveMove = derive2 { name="diveMove"; version="1.4.3"; sha256="18420gm1cb0pinp05n08cj5qgf9rmn5ksr7bfq464s61isrhmzhy"; depends=[caTools geosphere KernSmooth quantreg uniReg]; }; + diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; }; + diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; }; + diversitree = derive2 { name="diversitree"; version="0.9-10"; sha256="0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"; depends=[ape deSolve Rcpp subplex]; }; + divest = derive2 { name="divest"; version="0.3.0"; sha256="0clk8ljhvssik29knrmbdyg0dqky74ghijfjdnk098vw7k1iyp51"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="0.1.2"; sha256="1g3wv89zjd5x0qic39jy81kl488gila3lwdjdilm9dxh4kb4dbw5"; depends=[cluster RcppCNPy]; }; dixon = derive2 { name="dixon"; version="0.0-5"; sha256="0x7x0l7p8kmkfqqqah8hck2r96b3w8padd41skd3q35vq8kmnsqc"; depends=[spatstat splancs]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; @@ -4745,27 +4868,30 @@ in with self; { dnc = derive2 { name="dnc"; version="1.2"; sha256="0a0nc1yx6vhbjsik9pidda97i7s6ndlsm8pzx29ccmxlmqncc18b"; depends=[BayesLogit igraph MCMCpack movMF plot3D plot3Drgl Rcpp RcppArmadillo skmeans vegan]; }; dnet = derive2 { name="dnet"; version="1.0.10"; sha256="011rqvwski3jh5nmn84pg3pxznbfm37gjz7sp7n6f3x3y807q2rg"; depends=[Biobase graph igraph Matrix Rgraphviz supraHex]; }; doBy = derive2 { name="doBy"; version="4.5-15"; sha256="0n1ml47f78nqhy92a0fgsb4brz0qyfr4q3c7im8pnb0ngia4ssdx"; depends=[MASS Matrix]; }; - doFuture = derive2 { name="doFuture"; version="0.3.0"; sha256="1np7g4dqxkbfrilcbyrfdkppdv558xl9a4s4wgcxb2in6h27zzwp"; depends=[foreach future iterators]; }; + doFuture = derive2 { name="doFuture"; version="0.5.0"; sha256="1yb483x99z7xjrxb2r4v2l0d66y15pc799dxqn62kppmr0j452bz"; depends=[foreach future iterators]; }; doMC = derive2 { name="doMC"; version="1.3.4"; sha256="0y47jl6g4f83r14pj8bafdzq1phj7bxy5dwyz3k43d2rr8phk8bn"; depends=[foreach iterators]; }; doMPI = derive2 { name="doMPI"; version="0.2.1"; sha256="1d2pkxsap656l7h88q37ymy1jw0zd4n9h892511a1a230dxwc0xh"; depends=[foreach iterators Rmpi]; }; doParallel = derive2 { name="doParallel"; version="1.0.10"; sha256="1mddx25l25pw9d0csnx2q203dbg5hbrhkr1f08kw0p02a1lln0kh"; depends=[foreach iterators]; }; - doRNG = derive2 { name="doRNG"; version="1.6"; sha256="0yvg4052gfdh54drn6xnpiqyd77p8765yi525nag3ismw2yn9y58"; depends=[foreach iterators pkgmaker rngtools]; }; + doRNG = derive2 { name="doRNG"; version="1.6.6"; sha256="0xnqrc74qncg5iv4cvq0vh3r1sd407wvzx0hfpy8j2rcqy12574k"; depends=[foreach iterators pkgmaker rngtools]; }; doRedis = derive2 { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; }; doSNOW = derive2 { name="doSNOW"; version="1.0.14"; sha256="1xfk48i465sv2jqzydsaff3a656ggkrxzvhsqnrsgqh1k3423a1g"; depends=[foreach iterators snow]; }; docopt = derive2 { name="docopt"; version="0.4.5"; sha256="1pwng6018ls0hk785bs8yjwpzsqr2pcvzgpavqd9rw19n5lvzhxn"; depends=[stringr]; }; docopulae = derive2 { name="docopulae"; version="0.3.3"; sha256="13889sj509gbl9zs7jqdvslp6sc81jv54cbqh1wpp834jp5s1q3x"; depends=[]; }; + docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; + doctr = derive2 { name="doctr"; version="0.2.0"; sha256="1ca04ysfrxclqw50m9rj25qi9i2b2gg7bxqqbk526v4hv178zryj"; depends=[dplyr magrittr purrr readr stringr tibble tidyr]; }; + docuSignr = derive2 { name="docuSignr"; version="0.0.1"; sha256="0y61n35k3ap4xi5vh8g1nadp3b5wl301rdh8ycf9yci7zm7sagyl"; depends=[httr jsonlite magrittr]; }; documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; - docxtools = derive2 { name="docxtools"; version="0.1.0"; sha256="109fv2sg4dw6s10b4fx44npwvyr5yr69y7m701irqpc0bbwssh55"; depends=[dplyr ggplot2 pander stringr tibble tidyr]; }; + docxtools = derive2 { name="docxtools"; version="0.1.1"; sha256="1mlgl9105mifzdgf57spgr2rr5740ghr5afmlskxn6ind7jfka70"; depends=[dplyr ggplot2 pander stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; }; domino = derive2 { name="domino"; version="0.3.0"; sha256="0lhrnrpyz98cl16a1xk7x0299kxkz303myyz61nw3x6f7kh1gvd6"; depends=[]; }; dosresmeta = derive2 { name="dosresmeta"; version="1.3.3"; sha256="0j0718mlzwnnxc7rm9yqm9izsa7c2kbwfx9ai2ygj3xki9wr70jm"; depends=[aod Matrix mvmeta]; }; dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="0.9-04"; sha256="0qp6magpp0jaa0b9sfkbxd91afayl24kj0yrh0ix1v3ahdnaar8f"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; }; - dotwhisker = derive2 { name="dotwhisker"; version="0.2.3"; sha256="0q5l7vkypnh1rxlh5yd8jq4kql62wqf60gdpf7cds437w8fs8c01"; depends=[broom dplyr ggplot2 gridExtra gtable plyr stringr]; }; + dotwhisker = derive2 { name="dotwhisker"; version="0.2.5"; sha256="0swldw1krrnjklmm3mifxr2h278ffvry9vf8hm6lx2bcwgx3v408"; depends=[broom dplyr ggplot2 gridExtra gtable plyr stringr]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; downscale = derive2 { name="downscale"; version="1.2-4"; sha256="080zlfz0yhznymr7icc2m7w5c0pqiak1qp22ywcfcb6d0mri3k8l"; depends=[cubature minpack_lm raster Rmpfr sp]; }; - downsize = derive2 { name="downsize"; version="0.2.1"; sha256="0cl143b6rn5l7q67vd9kjj5sdqq13s2fww722vqcq7ham20k2wsp"; depends=[dplyr R_utils]; }; + downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; }; dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; }; dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; }; @@ -4777,7 +4903,7 @@ in with self; { dprep = derive2 { name="dprep"; version="3.0.2"; sha256="0iw1pqpqlv436wpwh1w832aqvy91zvxmbk2jdw7aczrb29wys2bj"; depends=[class e1071 FNN MASS nnet rgl rpart StatMatch]; }; dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; }; - drake = derive2 { name="drake"; version="1.0.1"; sha256="14r1qa6nf1g0gixnyx7b60xga37gic99ma7mr2fzgqa7i89bz2hc"; depends=[crayon digest eply formatR igraph magrittr plyr pryr R6 storr stringi stringr]; }; + drake = derive2 { name="drake"; version="2.1.1"; sha256="0z85q0snwqs027g52d23q2diy4ff4cmds9sm49gkc9ns3pk2gw4v"; depends=[base64url codetools crayon digest eply igraph magrittr plyr R_utils storr stringi stringr testthat]; }; drat = derive2 { name="drat"; version="0.1.2"; sha256="14nmbxy2y51bi258fmx24pkwmga791hnwzbx6jy2sl55g3vrxjpz"; depends=[]; }; drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; @@ -4800,12 +4926,13 @@ in with self; { dtplyr = derive2 { name="dtplyr"; version="0.0.1"; sha256="05p51dnvx2ldjkipbhi0ia3lq6l4xv55sqnqjhlnqc4p4hfc7wwf"; depends=[data_table dplyr lazyeval]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dtw = derive2 { name="dtw"; version="1.18-1"; sha256="1b91vahba09cqlb8b1ry4dlv4rbldb4s2p6w52gmyw31vxdv5nnr"; depends=[proxy]; }; - dtwSat = derive2 { name="dtwSat"; version="0.2.1"; sha256="0w0hg0cp827mw98xlq8yqmx4cs4m7zlg6gbjlxk5pm8v2a3nhn3s"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales sp zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="3.1.1"; sha256="0g3fffsvlwqb528y02fkazbll10yzcpblwxpc3519zff23vvb025"; depends=[caTools clue dtw flexclust foreach ggplot2 proxy Rcpp reshape2 rngtools]; }; + dtwSat = derive2 { name="dtwSat"; version="0.2.2"; sha256="083jld6fd10fk2nif806m7vmckii9h9mm32vyw5z63fvnx7l0yxg"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales sp xtable zoo]; }; + dtwclust = derive2 { name="dtwclust"; version="3.1.2"; sha256="18m85nfkipmvbsdknkp50d75bl6wg8zhs5ksp71n622z1lzfx132"; depends=[caTools clue dtw flexclust foreach ggplot2 proxy Rcpp reshape2 rngtools]; }; dualScale = derive2 { name="dualScale"; version="0.9.1"; sha256="11hqxprai0s5id6wk4n2q174r1sqx9fzw3fscvqd2cgw8cjn1iwl"; depends=[ff lattice Matrix matrixcalc vcd]; }; + duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; - dunn_test = derive2 { name="dunn.test"; version="1.3.3"; sha256="1hkfv9p06gfv0j4fh299x0cm9rrvsbqv89kqddqf6fablxmqm7vh"; depends=[]; }; + dunn_test = derive2 { name="dunn.test"; version="1.3.4"; sha256="1vnh98vqy0zy9bi3kpdzp74apy8zw8jl9r75vnqz5hjs3d6rg7lb"; depends=[]; }; dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dvfBm = derive2 { name="dvfBm"; version="1.0"; sha256="0gx11dxkbnh759ysd1lxdarlddgr3l5gwd5b0klwvwsgck6jv529"; depends=[wmtsa]; }; dvn = derive2 { name="dvn"; version="0.3.5"; sha256="04di2gpdacivvd9bi96w6145k280s8blavdhi1w3rw4c7sc3hag2"; depends=[RCurl XML]; }; @@ -4815,7 +4942,7 @@ in with self; { dynCorr = derive2 { name="dynCorr"; version="0.1-2"; sha256="0qzhhfhkwpq6mwg7y6sxpqvcj8klvivnfv69g7x3ycha1kw2xk3w"; depends=[lpridge]; }; dynOmics = derive2 { name="dynOmics"; version="1.0"; sha256="10aw362hhwqdnjf7xxzy25fdxq2zznzvg6xwvl25a9ppj76nm1rh"; depends=[ggplot2 gplots snow]; }; dynRB = derive2 { name="dynRB"; version="0.9"; sha256="0ysdlcchsszrgp2cizmli0l86ym2jz9addc21wxgdlz0vdfn7fn4"; depends=[caTools corrplot]; }; - dynaTree = derive2 { name="dynaTree"; version="1.2-9"; sha256="1a94mwllk116k9al18ckzy9p6yckvifp5hwrz2na4n2r10ivhn86"; depends=[]; }; + dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="0.2.0"; sha256="1ikl69c4hb1b4nv0zm6n3aaw928zihxzcbnwid29zdxl5ybg3bfd"; depends=[boot Rcpp RcppArmadillo stringr survival]; }; @@ -4833,17 +4960,19 @@ in with self; { eAnalytics = derive2 { name="eAnalytics"; version="0.1.3"; sha256="1lrkmfs2sq9p2n7g528jf6wxixqk08w468nckkij2mprhrccjjj6"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard]; }; eDMA = derive2 { name="eDMA"; version="1.4-0"; sha256="1nkbl6yywffb8q0x6ajymh1hpmkq038dc3a7xvw9szcjfrfbhw9v"; depends=[Rcpp RcppArmadillo xts zoo]; }; eHOF = derive2 { name="eHOF"; version="1.8"; sha256="0g0sb98mlgvhs27s0a1x0ysj3r4p3r7i382fqzfv29kn1ayw0r5c"; depends=[lattice mgcv]; }; + eLNNpaired = derive2 { name="eLNNpaired"; version="0.2.3"; sha256="08nck2p5npyw264kgcqmgx5rx7c3h9v892f90xlcd1dnb7dqlan3"; depends=[Biobase globaltest GSEAlm iCheck samr]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eRm = derive2 { name="eRm"; version="0.15-7"; sha256="0x8cqcwgn8znd9w9vkxcacf097rziyb511wzcfmhhadidiilk0x3"; depends=[lattice MASS Matrix]; }; eVenn = derive2 { name="eVenn"; version="2.3.4"; sha256="1nwbqk2hqdi7y4ys3h6nrjv1pjzyx96w7643l8nbcdg5i4bbvvls"; depends=[]; }; eaf = derive2 { name="eaf"; version="1.07"; sha256="0310lrqfm1l0lifak7wa6xn21bzzn27kbrrx0bidj4hibwv7sa4l"; depends=[modeltools]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; - earth = derive2 { name="earth"; version="4.4.9"; sha256="1dyz2ac754scg474x9ksrwrqflmh9wi7qwgm494fpfi9ndd9ycig"; depends=[plotmo TeachingDemos]; }; + earth = derive2 { name="earth"; version="4.4.9.1"; sha256="1h7rakv1qgyz6ccbrb7njdvgkplbn0bmj8r0ff0cbncgw1hkhbrm"; depends=[plotmo TeachingDemos]; }; earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; }; - easyDes = derive2 { name="easyDes"; version="1.0"; sha256="17wjsvy9hnrp6s50ivrvahd6p147ibcn3wrlj1hx95qckqjk2b06"; depends=[multcomp PMCMR]; }; + easyDes = derive2 { name="easyDes"; version="3.0"; sha256="1z4ynd1ck2vxsshygjgnhyzg8i41kpnwsfix96nmgwm3861n0phb"; depends=[multcomp PMCMR]; }; + easyNCDF = derive2 { name="easyNCDF"; version="0.0.1"; sha256="0yc084ns5gnyifcll6by7lmy0jnigg66i7rmx3y0fx9fhn3xq7xr"; depends=[abind ncdf4]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.3"; sha256="148ga6flgv74sfzz5kvvnqhfdkx6zhpl6ydzcd32lz3cq24ckli9"; depends=[XML]; }; - easySdcTable = derive2 { name="easySdcTable"; version="0.2.1"; sha256="0a7779xvsqzcsva9jxa10wz8bdbfp49r0w7c2dqwi9md04bv1qg1"; depends=[sdcTable SSBtools]; }; - easyVerification = derive2 { name="easyVerification"; version="0.4.0"; sha256="0jllrrp0abqkij7iq4z5paca4lgxh4lbrj5ifhrakrxdpncrg9wd"; depends=[pbapply Rcpp SpecsVerification]; }; + easySdcTable = derive2 { name="easySdcTable"; version="0.3.0"; sha256="1dyj66vd1g06s2fs6xqrf7b4sr2p55azhzdjhazvkm9h8j55ai02"; depends=[sdcTable shiny SSBtools]; }; + easyVerification = derive2 { name="easyVerification"; version="0.4.1"; sha256="1n086cbwsayhsflisy0x4ym1232z9n4896bdw0kyvydz9fwf3sw4"; depends=[pbapply Rcpp SpecsVerification]; }; easyanova = derive2 { name="easyanova"; version="4.0"; sha256="1d8fkgyqzphipvla7x8ipcf0by07iqx8xran15d2q82yq9iik5g9"; depends=[car nlme]; }; easyformatr = derive2 { name="easyformatr"; version="0.1.2"; sha256="0mrpd21hyafn82apclxmhs2jbd87sdw0g6lwc3h6gl5cbm213nxb"; depends=[dplyr knitr lazyeval magrittr stringi tibble tidyr]; }; easynls = derive2 { name="easynls"; version="4.0"; sha256="1j2crqvgsf84bpwzf4qh5xkzn5mhxhfx9c0y3p8dbyn8bg7zc2rf"; depends=[]; }; @@ -4863,13 +4992,12 @@ in with self; { echogram = derive2 { name="echogram"; version="0.1.0"; sha256="0v0fiy2fflk7pxn8wqr75wym0m6snggvvgxpa2b35alpmqch9k18"; depends=[geosphere readHAC]; }; ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; }; eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; - ecm = derive2 { name="ecm"; version="0.8.0"; sha256="0y9whfr75mc54ip1vc0zrbxsjslz86adqrqdvpbbva81c2x1b0ir"; depends=[car]; }; + ecm = derive2 { name="ecm"; version="2.0.0"; sha256="1xfcpsnimik8a2rzsywgiw4dj3r66mfcq7l79096d3zifg2vjgxc"; depends=[car]; }; eco = derive2 { name="eco"; version="3.1-7"; sha256="0qrl1mq0nc42j4dzqhayzzb56gmkk479wgpxikzgzpj9wv78yd5s"; depends=[MASS]; }; ecodist = derive2 { name="ecodist"; version="1.2.9"; sha256="199f3lwwm8r2bnik595m540la1p4z6vbkwfqh9kimy9d0fjp8nps"; depends=[]; }; ecoengine = derive2 { name="ecoengine"; version="1.10.0"; sha256="0k24m03qpqbcdwsf6xawrh0x43b97w2pba3h4pcwl7j2p0ls91pi"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecoreg = derive2 { name="ecoreg"; version="0.2.1"; sha256="1v3n5nbabw6qmwcq3sx759k6c8q4pxbffl227rv0lnnfbq77zlmc"; depends=[]; }; - ecoretriever = derive2 { name="ecoretriever"; version="0.2.1"; sha256="0jg4rmxfa9k0smlkrhiqdrjk3vhhmv6w634nh9y3mrdwnq4sk466"; depends=[]; }; ecoseries = derive2 { name="ecoseries"; version="0.1.1"; sha256="165vc00nhlff91dry51q9agm01b9ikqs1zgwfc7xw1rq59cqbz47"; depends=[magrittr RCurl readr rjson rvest tibble xml2]; }; ecosim = derive2 { name="ecosim"; version="1.3"; sha256="00arz8j2az1nn4p96pshw0p9xxq2qfgkyrf4ahvl1hp1h3k68jfn"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.1.3"; sha256="01nxjbx638s8pk1ybsz9zbk35cg27x35fam419b9rjj9kspxz49s"; depends=[FD]; }; @@ -4878,11 +5006,11 @@ in with self; { ecoval = derive2 { name="ecoval"; version="1.1"; sha256="0ihig6nq3lrz6lzix92lrlzywnqkzsp5lrbccn5slhxdj5llird2"; depends=[rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.0.0"; sha256="0v07ak7fbiph058rlbhmgx0f230mnpi39ib8vx9bdzhx5g5lrp0j"; depends=[Rcpp]; }; ecr = derive2 { name="ecr"; version="1.0.1"; sha256="0vyv0ik8a9wa5cv2yd66935hn1i390lm6l6g0hnaycz07rfh8rlg"; depends=[BBmisc checkmate ggplot2 gridExtra parallelMap ParamHelpers reshape2 smoof]; }; - edarf = derive2 { name="edarf"; version="1.1.0"; sha256="04gcki36xnaflg1szsdsdvdw5icsny6iaqmqyxmb2im1b1a0r39w"; depends=[data_table ggplot2 mmpf]; }; + edarf = derive2 { name="edarf"; version="1.1.1"; sha256="0f27hs7vn4v2jis3d66s48hr0ki8m8ndspcw1cwns5vjwb77iqwm"; depends=[data_table ggplot2 mmpf]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edci = derive2 { name="edci"; version="1.1-2"; sha256="10rqkimvmyb7hxp4wkpj8bq07q3yaimm058d4mmr09fw25lqyz1q"; depends=[]; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; }; - edeaR = derive2 { name="edeaR"; version="0.4.7"; sha256="1fgngqd9qi798v435cax3kvwczq536jac6fhj5nsjbach1jlmm2y"; depends=[data_table dplyr ggplot2 lubridate magrittr tidyr XML xml2]; }; + edeaR = derive2 { name="edeaR"; version="0.5.0"; sha256="0r1k7lyc6hp2akdlbdahlxp8xa1h11hmfanki1pqxkllqzx9d1q1"; depends=[bupaR data_table dplyr XML xml2]; }; edesign = derive2 { name="edesign"; version="1.0-13"; sha256="0fc3arr8x9x9kshp6jq4m4izzc5hqyn5vl0ys6x0ph92fc6mybp3"; depends=[]; }; edf = derive2 { name="edf"; version="1.0.0"; sha256="14ikm6j0ndxrk7c7lh5mbd2aci46d4j9a30mvcgnxy3kq6046a7b"; depends=[]; }; edfReader = derive2 { name="edfReader"; version="1.1.1"; sha256="1si123kn66z2h8rrp5ck6hbjp11q0p3ja2h7xim4sqglbwca3fjw"; depends=[]; }; @@ -4905,15 +5033,15 @@ in with self; { effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; }; effects = derive2 { name="effects"; version="3.1-2"; sha256="1fwkz6z3rya4qn476w9vni15rfvjp2ix87qk0naszn3n1k8bf0l0"; depends=[colorspace lattice lme4 nnet]; }; efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; }; - effsize = derive2 { name="effsize"; version="0.7.0"; sha256="113afdf1w1q75alc4i5i8l3ljsdsfn22l8cszljrpgp420csbzhv"; depends=[]; }; + effsize = derive2 { name="effsize"; version="0.7.1"; sha256="0l0ja7qcknn8r5hf7nrjk5cy0ajw0z60ggbyj8qvjzf8qah4mlss"; depends=[]; }; efreadr = derive2 { name="efreadr"; version="0.1.1"; sha256="1fkifml8g7hgg3qb19b9ljljzx9sbbpnb9xa18mvkxgmbw41qsy7"; depends=[dplyr ensurer magrittr readr]; }; - ega = derive2 { name="ega"; version="1.0.1"; sha256="02mbadv505jz6nk1yp9xl12c9l9wnwpl5bajfbhgs837pdca438g"; depends=[ggplot2]; }; + ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; egcm = derive2 { name="egcm"; version="1.0.8"; sha256="1mrbm0yzqw344fzgcbwc6bgdn8fv8id80jnfp3jaqjfslfhlpzx7"; depends=[fArma ggplot2 MASS tseries TTR urca xts zoo]; }; eggCounts = derive2 { name="eggCounts"; version="1.3"; sha256="1yak67k1c13rx6ghm78585k2rdsgg9ajr3zaihjk8widavb3m23g"; depends=[BH boot coda numbers Rcpp RcppEigen rstan StanHeaders testthat]; }; egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; }; eha = derive2 { name="eha"; version="2.4-4"; sha256="1sp1v3jmidj4ynjq7q7y28j9f483yhbzaz1jnxjc4hqk8398cxii"; depends=[survival]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; - eiCompare = derive2 { name="eiCompare"; version="1.8"; sha256="12ga90nnxzy08ajgx9yavasbx5j4nrqkqinbi9w7yp4r5f27pqg8"; depends=[cubature data_table eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; + eiCompare = derive2 { name="eiCompare"; version="1.9"; sha256="0y4b1w4klsx63xllq32mb7z57wldxvwv9ria5zgnrqwygvnxvk0j"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; }; eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; }; eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; }; eigenmodel = derive2 { name="eigenmodel"; version="1.01"; sha256="0p9n28x5gg46nszzd2z9ky5fhv6qa070673i1df6bhjh962aqgaf"; depends=[]; }; @@ -4928,8 +5056,8 @@ in with self; { elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; electionsBR = derive2 { name="electionsBR"; version="0.2.0"; sha256="1mcnmrnjkb9qwnbh79kfl90dqji2imq9s9jsx6h8d5ccmjfdmzl7"; depends=[dplyr magrittr]; }; - elementR = derive2 { name="elementR"; version="1.2"; sha256="030ljdk8qbvv81bjr1pxg597mq1i22fpjzqdcrbrgl1c508ms2l2"; depends=[abind devtools gdata gnumeric lmtest R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2]; }; - elevatr = derive2 { name="elevatr"; version="0.1.1"; sha256="0dwq748f4nfz41j6jc5v7l4gdrwkjrfqmivkiz799yq0pql9djar"; depends=[httr jsonlite prettyunits progress raster ratelimitr rgdal sp]; }; + elementR = derive2 { name="elementR"; version="1.3.1"; sha256="0cpff04inl9jxsr1nwfsl9lidsaz3gb090hf18aab2x0x6bjr18c"; depends=[abind climtrends colourpicker devtools EnvStats gdata gnumeric lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; }; + elevatr = derive2 { name="elevatr"; version="0.1.3"; sha256="1fs34gaak0sdxpvbgszrwd833nd03p19m6fawaard1waylxsgscg"; depends=[httr jsonlite prettyunits progress raster ratelimitr rgdal sp]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; elhmc = derive2 { name="elhmc"; version="1.0.0"; sha256="0xjl43xa0qw0hwdx73vv8cl1gyd5srdhpcpkap3wbnka4c75wpgj"; depends=[emplik plyr]; }; elliplot = derive2 { name="elliplot"; version="1.1.1"; sha256="1sl85kyjpxiw0gs3syhlhfrci03fl054py7m24xln5vk07665vbp"; depends=[]; }; @@ -4938,7 +5066,7 @@ in with self; { elmNN = derive2 { name="elmNN"; version="1.0"; sha256="129r6d3qa48gqvqxks53hdmyk3jjakddsj5fwj91kqq0hkm34kyd"; depends=[MASS]; }; elrm = derive2 { name="elrm"; version="1.2.2"; sha256="0wz0l703v0iyp7nswdmh65n0cy3a7rfvyxd795a6nzk3nich8bfg"; depends=[coda]; }; emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; }; - embryogrowth = derive2 { name="embryogrowth"; version="6.4"; sha256="13mh7sh30q1zz4pqg4gwqsky172c0kklypv8n0432dkhmcv14543"; depends=[deSolve HelpersMG polynom]; }; + embryogrowth = derive2 { name="embryogrowth"; version="6.5"; sha256="1gbmrcjm8zwm01xq62wrkibmqnig904bnzrpar4d4qb98b6b3gp6"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.9"; sha256="09xbdyw8a4pvrsg3ryr8drby0njy4avc5wsjj4ffibdaicpchy69"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="1.0.0"; sha256="0mldd0b8mh4q72r968kc2lyy97abkw1b7sm50za7ip3m2khzcrj8"; depends=[FNN ggmap ggplot2 gridExtra HLMdiag maptools moments MuMIn nlme openxlsx parallelMap reshape2 simFrame]; }; emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; @@ -4947,36 +5075,38 @@ in with self; { emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; }; - emojifont = derive2 { name="emojifont"; version="0.4.0"; sha256="1g4bibrzjjgw3swzly590p9c1zipddzr8bgfydcqcbsqigzwvpj8"; depends=[ggplot2 proto showtext sysfonts]; }; - emon = derive2 { name="emon"; version="1.3"; sha256="025pl4biwncwb5cfpm0mb1r7wjv6akg1qkzz0bfnbp44sl58kfsc"; depends=[MASS mgcv]; }; + emojifont = derive2 { name="emojifont"; version="0.4.1"; sha256="1hq66sq5g7nmmakxbd2pdv62j1qsd3nq516pkz00i76fyrky8369"; depends=[ggplot2 proto showtext sysfonts]; }; + emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; }; emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; }; empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; }; emplik = derive2 { name="emplik"; version="1.0-3"; sha256="0b52383m2djdcg9b1a7r10k5pkzljz6dalvbg2gg962ckvpndb11"; depends=[quantreg]; }; emplik2 = derive2 { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; }; - emuR = derive2 { name="emuR"; version="0.2.1"; sha256="0lfgv2lbzp8l6f51mdfx6y0dj26w74ych924mlbpi53vm3sqa266"; depends=[base64enc data_table DBI dplyr httpuv jsonlite MASS RSQLite stringr uuid wrassp]; }; + emuR = derive2 { name="emuR"; version="0.2.2"; sha256="0g2448bx3p7brkzaj25wh96kv720ckbvqz6x6zc5vnsbg7rdl9il"; depends=[base64enc data_table DBI dplyr httpuv jsonlite MASS RCurl RSQLite stringr uuid wrassp]; }; emulator = derive2 { name="emulator"; version="1.2-15"; sha256="1rp7q7zs8b49jzdkbzm4s1g8554h41hcabf4d78k9jhhys2z28g2"; depends=[mvtnorm]; }; enRich = derive2 { name="enRich"; version="3.0"; sha256="1ni2hkw0pq0mjjqd11qqrc3lbzyif84ljh9zrn2yil1qk2882r1n"; depends=[]; }; - enaR = derive2 { name="enaR"; version="2.9.1"; sha256="1ryxzrdq9f88bvkyf6vdg61vfcjw1mj4dzzj8kliaf0h3ygzyaw1"; depends=[gdata MASS network sna stringr]; }; - encode = derive2 { name="encode"; version="0.2"; sha256="0sv881rpbfq1843f6bfa54jlj8ayrznyqxa6j4ngpx7ynyj84qwx"; depends=[]; }; + enaR = derive2 { name="enaR"; version="2.10.0"; sha256="09hzpmjbwg433b8ibrbvjzi8622cgfcq4rz194vq6qgknjr57z2j"; depends=[gdata MASS network sna stringr]; }; + encode = derive2 { name="encode"; version="0.3"; sha256="0s2xva9yadk0s9x6kiwmh6bbq79aa1zx4gb5d1m7nbp2z8x4z77i"; depends=[]; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; }; endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; - endorse = derive2 { name="endorse"; version="1.5.0"; sha256="0nyrcbrq8c5q2h45g1iz4n845kf3lvcwsj9j9ngkma17vbqf91hl"; depends=[coda]; }; + endorse = derive2 { name="endorse"; version="1.5.2"; sha256="15yq3r3mdzyhn18b6z8lrad6flxsmwv8pl3ax26ggm4c8a5f54is"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; }; energy = derive2 { name="energy"; version="1.7-0"; sha256="1g4hqi6mgsnd1w4q7dd2m40ljh2jdmvad91ksbq9fscnrqpvji1x"; depends=[boot Rcpp]; }; energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; }; - english = derive2 { name="english"; version="1.1-1"; sha256="09g4srg9wkmr0w9yssp491g0fkripwlhp790mjwanb03wbvz8g2d"; depends=[]; }; + english = derive2 { name="english"; version="1.1-2"; sha256="1wlqpl85rq49ndrfqlixayp4zzvpad0snln5qirr1i3y2q510dgx"; depends=[]; }; engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; }; enigma = derive2 { name="enigma"; version="0.3.0"; sha256="0ld3jhxrpyrhjklwif4jf1rn9ykx218pqzn9bfl0qdxr6cr4hhwy"; depends=[crul jsonlite plyr tibble xml2]; }; - enpls = derive2 { name="enpls"; version="5.7"; sha256="1c5brjddbaw4y23zpdaybkkgh4i2nsv5n5cvyv0jqi18qhx2s7rz"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; + enpls = derive2 { name="enpls"; version="5.8"; sha256="1cgpwfv4xrnikkxxrswzvlzlr8dbwrx53wax3bdn14a3fivv1fgk"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; }; + enrichR = derive2 { name="enrichR"; version="1.0"; sha256="0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"; depends=[httr rjson]; }; enrichvs = derive2 { name="enrichvs"; version="0.0.5"; sha256="0x91s03hz1yprddm6mqi75bm45ki3yapfrxmap7d4qc0hi06h22k"; depends=[]; }; - enrichwith = derive2 { name="enrichwith"; version="0.0.2"; sha256="08kzj805mnxg23b3q5ayj8fp66qf5maiky1prv8mgxyays8yv4dl"; depends=[]; }; - ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.3"; sha256="1iscg03v691cyfma3fs6xnj9chf5arlg61bggg2wmkczp7gnsi3g"; depends=[chron]; }; + enrichwith = derive2 { name="enrichwith"; version="0.0.3"; sha256="161xlcsfzxf5l0wbswzc3ddl9vs13cmig90qfjrwi2f4f94v4pnb"; depends=[]; }; + ensembleBMA = derive2 { name="ensembleBMA"; version="5.1.4"; sha256="14zq22h8nna7j403c1x9py90fwas8fg0vq3im2zh31dyrk1j8d7k"; depends=[chron]; }; ensembleMOS = derive2 { name="ensembleMOS"; version="0.7"; sha256="0g5qzdic5jvgn6wv7zh0jnz8malfgfxn26l7lg30y96vcmi4hk54"; depends=[chron ensembleBMA]; }; ensembleR = derive2 { name="ensembleR"; version="0.1.0"; sha256="0xvq1jlsp7gsk46i847nfvadxwlh09gi2rgwss2wf2xmh1855ray"; depends=[caret]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; - entropart = derive2 { name="entropart"; version="1.4-6"; sha256="0qvxwqg8fypc2q7a75s7ngqx5ga409p1iw1fdxp84xwdvgdcw07l"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; + entropart = derive2 { name="entropart"; version="1.4-7"; sha256="18h8jzan7q9wkz0awpzlypvz8xzq7ak0j21jy7nk02k64v7zkpch"; depends=[ade4 ape EntropyEstimation geiger vegan]; }; entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.1.1"; sha256="0vz4cz52dx8r7zkgb3d8w2716g0g23rb638sf2b6asbfp2h2w5f6"; depends=[fitdistrplus investr modeest sn]; }; + envDocument = derive2 { name="envDocument"; version="2.3.0"; sha256="151ibmkq63r7lvh5lrszy7wsmrygvr2789lhcfp11nw3d39b4rqc"; depends=[]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.1.5"; sha256="0zb7bl92n2h3hhrs7slbqizkjk0rg47lmahmrg9sk0px7ncbjhmv"; depends=[fitdistrplus investr modeest sn]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.1.1"; sha256="1wvanngizif7yx91f15v5mgs0dib01g440f4nvi0iid2hzx9ls4q"; depends=[mixtools rcdk xcms]; }; enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; }; enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; @@ -4986,7 +5116,7 @@ in with self; { epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.4.0"; sha256="0pa44wp8cq8xf2835k3gch0m40s7l7r9f0scyizk54nv6cdq88cx"; depends=[]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.2.2.0"; sha256="1f9kifjgdwxs7c236nsr369ij71rj7l5ady88h4n5p5pjw2h451a"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="0.9-79"; sha256="08gfy4ri4haxi82zs4xngrabimvajlrbw1s1dqwl0gfjz4zdklby"; depends=[BiasedUrn survival]; }; + epiR = derive2 { name="epiR"; version="0.9-82"; sha256="0qsi5m39hkh1m3sk341cbd8gafr0rxy688vgkcxdk4wxfxvh3yrf"; depends=[BiasedUrn survival]; }; epibasix = derive2 { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; }; epidata = derive2 { name="epidata"; version="0.1.0"; sha256="1lp6hnjzga787abq94k8v48wlikpp5hj1xwmxc8nj1imyr4r8a4h"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; }; epifit = derive2 { name="epifit"; version="0.1.2"; sha256="1i1ngb5kh03gyx1702fwav3dc3mqry1wjzc7ry36hdw0ngawid34"; depends=[MASS]; }; @@ -4995,21 +5125,21 @@ in with self; { episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; }; episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; }; epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; }; - epitools = derive2 { name="epitools"; version="0.5-7"; sha256="163sibnbihdsnkxf313fr8n8rh5d64dwjagv95vhhzr87f21sw22"; depends=[]; }; + epitools = derive2 { name="epitools"; version="0.5-9"; sha256="1lnwygbwpw0b29sxiz3wry2wf6k7kcjlb4c8bj02gyaxq7rssnzk"; depends=[]; }; eply = derive2 { name="eply"; version="0.1.0"; sha256="18q40n06gbqg5cs0jknlxk5x0pwcbjnfb27ysmbf76s826qdc8gh"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; }; epr = derive2 { name="epr"; version="2.0"; sha256="1xqc0jhgdwwvilqpljxzpzz3wx30kigy09sxvzcfvsjmxyyvflqy"; depends=[car]; }; - epxToR = derive2 { name="epxToR"; version="0.1-0"; sha256="1nvm9cr12lvh877xxiyii0gbfs6r0px76f5qlpn3pdlgj59msn3s"; depends=[httr XML]; }; + epxToR = derive2 { name="epxToR"; version="0.2-0"; sha256="0rivlyvvj09ahph22aq8b7xabvagjjvwb9h908zwddzhh2hljj3h"; depends=[httr XML]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; - equSA = derive2 { name="equSA"; version="1.0.1"; sha256="0sy1wfdr9p5m8hx0wbf4kzcfxmak2q6snaasp224agammslgyqyp"; depends=[huge igraph mvtnorm XMRF ZIM]; }; + equSA = derive2 { name="equSA"; version="1.1.1"; sha256="101kvrna8pk1bv8zjih4f6v5chgypxc7nrwic6cwavdk49ihg8mk"; depends=[huge igraph mvtnorm speedglm XMRF ZIM]; }; equate = derive2 { name="equate"; version="2.0.6"; sha256="0fkgz4747wf2n1sfkskpbp20zdmxvykqhncr7a8wl5lp314r48x3"; depends=[]; }; - equateIRT = derive2 { name="equateIRT"; version="2.0-1"; sha256="07kyy0adg42vzg26ssfwy5hiwggymbkkpvyczhzch4113lipz6pd"; depends=[mirt statmod]; }; + equateIRT = derive2 { name="equateIRT"; version="2.0-2"; sha256="0dv7iszdmmx3hf7qhawlnx0lqf97k8y4zx8bmxyzmgj96k7db4h1"; depends=[mirt statmod]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; erah = derive2 { name="erah"; version="1.0.5"; sha256="00vygdrngbp53wip2x6dni3ygwax309i9si3gyqkxxbbkpv24b7i"; depends=[caTools HiClimR igraph ncdf4 nnls osd quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; erer = derive2 { name="erer"; version="2.5"; sha256="0wgzd7r63d20vghmbilqn1p5033i5p31asya1gzwlipgyfxmqp0b"; depends=[lmtest systemfit tseries urca]; }; - ergm = derive2 { name="ergm"; version="3.6.1"; sha256="1gjl1gil4vkcwrbb1fcri3jkdqy1m3bqqinw2g3fnv69m2k38szh"; depends=[coda lpSolve MASS Matrix network robustbase statnet_common trust]; }; + ergm = derive2 { name="ergm"; version="3.7.1"; sha256="1hsl9fl1vzggarqk6sbfv3cjbbnxgfzblfmvhhmwngmracch3pci"; depends=[coda lpSolve MASS Matrix network robustbase statnet_common trust]; }; ergm_count = derive2 { name="ergm.count"; version="3.2.2"; sha256="1zg07vm5y6n6r687sbdy5hcinsircm4zzkx5w4849s9kwjlnpn0b"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="0.3.0"; sha256="1152g9zz2wach0hbj27knxficvhf062alqa0wpj6nyqj2vsgnchh"; depends=[coda ergm network RColorBrewer statnet_common]; }; ergm_graphlets = derive2 { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; }; @@ -5023,7 +5153,8 @@ in with self; { errorlocate = derive2 { name="errorlocate"; version="0.1.2"; sha256="1qlwdvy7i62hpnfrryzmqwmygxa8mjc7q92g6k5n9r2r179q7h09"; depends=[lpSolveAPI validate]; }; esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; }; esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; }; - esc = derive2 { name="esc"; version="0.2.0"; sha256="0ihkmfw6h7lk3a1fzrgjpfz5dh8rfvpr1b7ijljnv7s8pa4yi5na"; depends=[readr]; }; + esc = derive2 { name="esc"; version="0.3.0"; sha256="1wn4dy6xyxvdwfkwihq02lja6dd8wn9diypyrbkw3qvilb23hg4v"; depends=[dplyr purrr readr sjmisc tibble]; }; + eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; }; estimability = derive2 { name="estimability"; version="1.2"; sha256="13b80bpnbrarazjvnpnk91ljjsqgfm2fm3gy66aj09cmmsmv199h"; depends=[]; }; @@ -5038,13 +5169,13 @@ in with self; { eulerian = derive2 { name="eulerian"; version="1.0"; sha256="0yhpnx9vnfly14vn1c2z009m7yipv0j59j3s826vgpczax6b48m0"; depends=[graph]; }; eulerr = derive2 { name="eulerr"; version="1.1.0"; sha256="00pblvyfhqcvbjwjkq237b7kj99vvkyclam9mpmgrd72wx6ryzr7"; depends=[assertthat lattice latticeExtra Rcpp RcppArmadillo]; }; euroMix = derive2 { name="euroMix"; version="1.1.1"; sha256="13ia6j0iwxhcfv17b5dsq1pk7v1kxaq6njxilxq0hvd57hv0b2a8"; depends=[Familias forensim paramlink]; }; - europepmc = derive2 { name="europepmc"; version="0.1.3"; sha256="1mjrrz8xjizxvkmzidbwxs82ijaa70l39anaba8bi7vj8l2k64bm"; depends=[dplyr httr jsonlite plyr urltools xml2]; }; + europepmc = derive2 { name="europepmc"; version="0.1.4"; sha256="0kh61jmr2y0wjqch0jzk594anpwq56x9lhx6sx54y2pqjqw68b0i"; depends=[dplyr httr jsonlite plyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="2.2.43"; sha256="1h3vx0lf6kqvvhcj1ichzsvqhjmskcpvxd37hym6cwwgkkmxrzk3"; depends=[classInt httr jsonlite RColorBrewer readr sp stringi stringr tibble tidyr]; }; + eurostat = derive2 { name="eurostat"; version="3.1.1"; sha256="0k896b6q8cd9yh25czf7nswlzhrswl63qrybw27r4acp9kg91n2k"; depends=[classInt httr jsonlite RColorBrewer readr sp stringi stringr tibble tidyr]; }; eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; }; evaluate = derive2 { name="evaluate"; version="0.10"; sha256="0mwna7rjyrmc76651a1fm7c76ippdsc2wsp3sj3iwb1c73mvlqv1"; depends=[stringr]; }; evaluator = derive2 { name="evaluator"; version="0.1.0"; sha256="00811idj3vx7x627dyw0i8qlbkscrdkxknwph4d4j8m49flh9j36"; depends=[dplyr extrafont ggalt ggplot2 magrittr mc2d pander psych purrr readr readxl scales stringi tibble tidyr viridis]; }; - evclass = derive2 { name="evclass"; version="1.1.0"; sha256="1h0lqf6wixsbcs4hnpzsjhsj8fifh9z5r90zcwscj1vk7aqf9cwg"; depends=[FNN]; }; + evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; }; evd = derive2 { name="evd"; version="2.3-2"; sha256="0n81plbw2p83c10y6a6hvqkxcbfqjdc41p02zyklbcafga1m4gdy"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; @@ -5054,39 +5185,40 @@ in with self; { eventstudies = derive2 { name="eventstudies"; version="1.1"; sha256="13l2yhmlpiid9r3njnmvja231l00ym7gvwfbv0m9fk2k5j6gm5id"; depends=[boot xts zoo]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; }; evir = derive2 { name="evir"; version="1.7-3"; sha256="1kn139vvzdrx5r9jayjb4b0803b0bbppxk68z00gdb50mxgvi593"; depends=[]; }; - evmix = derive2 { name="evmix"; version="2.6"; sha256="1rc52mqmzl05n5n1lr990czqgpq9h2x8shnv6s7hvr8896kjasjm"; depends=[gsl MASS SparseM]; }; + evmix = derive2 { name="evmix"; version="2.7"; sha256="0x3m4lwpwcavr950q66p7bkimshnvav4842dr505g5rc9vkw9xxg"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; evolqg = derive2 { name="evolqg"; version="0.2-5"; sha256="11n0gxkxhg1d2ziwbipqvyccgnsrzm3mk4xy2d7nxn662q1yl2ah"; depends=[ape coda expm ggplot2 igraph Matrix matrixcalc MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; }; - evoper = derive2 { name="evoper"; version="0.3.0"; sha256="1vbzlskb4l3mnxv8vkdqqrifldhcq053pfy927c0y7h5sfkfajra"; depends=[boot deSolve futile_logger ggplot2 plot3D reshape rrepast]; }; + evoper = derive2 { name="evoper"; version="0.4.0"; sha256="11l55jj7f4ggwvimvl3d2sv2nyds29bl4dai6ycpgnff7wwdv43g"; depends=[boot deSolve futile_logger ggplot2 plot3D plyr reshape rrepast]; }; evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; - evtree = derive2 { name="evtree"; version="1.0-2"; sha256="1izcv93irbi5zffyyzag2gcaf8zrhp2lkf3h68gb2jpf5x6wdw64"; depends=[partykit]; }; + evtree = derive2 { name="evtree"; version="1.0-5"; sha256="06afqr0gsyh80f2j56vl4cbjsz5gpywri87ykfmf1wxls7jqxqac"; depends=[partykit]; }; exCon = derive2 { name="exCon"; version="0.2.1"; sha256="0rblghg29azzbf8wq7wsypf9jprcy9a2063fhwn0lpxqqgbyzw8v"; depends=[jsonlite]; }; exact2x2 = derive2 { name="exact2x2"; version="1.5.2"; sha256="12m3kaxdrf4bsw7lrylk15nimhy4sgmjbnlqm684y2kyvii9yrg0"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; exactRankTests = derive2 { name="exactRankTests"; version="0.8-29"; sha256="0sj4bf0sab2rsgh967i5jl7ml2l1niydqmyn7c6ybai1gavsdpi1"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.3-1"; sha256="1mhigk1nzd24qhzgd1j96zlf38dr96c1y5jbmy6lz2sw7g4mmvgm"; depends=[ssanv]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; - exams = derive2 { name="exams"; version="2.2-0"; sha256="14w0m8jnnpbg153l0gq5lixw68ml3qvnnjyl4dbaiccm2as9spbn"; depends=[]; }; + exampletestr = derive2 { name="exampletestr"; version="0.4.0"; sha256="1ywr9v7h1ghpkm51p06rlr88ihpaqj0d6j57aj95x808ykhlkkp5"; depends=[BBmisc devtools filesstrings formatR magrittr purrr roxygen2 stringr]; }; + exams = derive2 { name="exams"; version="2.2-1"; sha256="0dz1ijdfikmxyrz33mz8qkf5kn9796c078ndqk5gfyyxl2jsj6jw"; depends=[]; }; excursions = derive2 { name="excursions"; version="2.2.2"; sha256="1f6vvv33205lj6hsmmhx3q82mkhh0shzyk5hrwzf2nh1cn61w1x0"; depends=[Matrix sp]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.1.1"; sha256="0cxi8rcig03qwahdilawg4j3i9a8sv8sxgy0a68pxxmg556dwk0j"; depends=[foreach plyr]; }; exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; }; expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; - expands = derive2 { name="expands"; version="1.7.2"; sha256="1yyic21ng5wj61na3d3lw6r2y8iclfhhbkkcrkjy01mx3pp6iiac"; depends=[ape flexmix matlab mclust moments permute rJava]; }; + expands = derive2 { name="expands"; version="2.0.0"; sha256="1ai269sic10hzw70whwv477yfgx5nhz4m06dfg373jp6i7vi5p9x"; depends=[ape flexmix matlab moments rJava]; }; expectreg = derive2 { name="expectreg"; version="0.39"; sha256="1mxhv6phc3lgp0zz20wszx4nr3by9p6492wcb0x8wn8p8p1sy1b3"; depends=[BayesX mboost quadprog]; }; experiment = derive2 { name="experiment"; version="1.1-1"; sha256="07yaf5k5fpymz2yvr52zbbi60g0v84qryvqqjq3sjq2mb1fjfz1p"; depends=[boot MASS]; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-3"; sha256="1gysdlr752f6caanhh1j6jhnplxb73qslink6n4fsv2qdxz0pfvf"; depends=[]; }; explor = derive2 { name="explor"; version="0.3.1"; sha256="11qc96m0wapsmw9i1z4vgcjwnb5g8zr8mc3m1diiipb9hld4yn7x"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; - expm = derive2 { name="expm"; version="0.999-1"; sha256="1d526dn1k9py1hiadnlp4a5dmxcfyfssh57f0v7hfy3gr9qmhn7a"; depends=[Matrix]; }; + expm = derive2 { name="expm"; version="0.999-2"; sha256="1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"; depends=[Matrix]; }; expoRkit = derive2 { name="expoRkit"; version="0.9"; sha256="0raf0m2nfbdbd1pc4lincyp8y8lgn3bfi4hn0p04plc5p40l1gvc"; depends=[Matrix SparseM]; }; expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; }; expp = derive2 { name="expp"; version="1.1"; sha256="13zbhkkcshqrpln5gsa051d390q9ij97lawsdbd5j7fj9hxm9pwh"; depends=[deldir rgeos sp spdep]; }; exprso = derive2 { name="exprso"; version="0.1.8"; sha256="1k3is8f4yfzzkcak9fmm2nk8vi85b0na5r96f3yjbc9qb0av9vb8"; depends=[affy Biobase cluster e1071 kernlab lattice MASS mRMRe nnet pathClass plyr randomForest ROCR sampling]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; - expss = derive2 { name="expss"; version="0.5.5"; sha256="1qpj6grmbld8q75kk8rj8l15vm4gqnpq8vbbc81415w3dw2phz84"; depends=[foreign]; }; + expss = derive2 { name="expss"; version="0.7.1"; sha256="02033gqm2hsdjil8qf0458a4xg19bsp7pk06p3i92chdz4z534q8"; depends=[data_table DT foreign htmlTable htmltools magrittr matrixStats]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; @@ -5097,13 +5229,13 @@ in with self; { extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; - extraDistr = derive2 { name="extraDistr"; version="1.8.3"; sha256="0xrjcwvmmz5g68cm2q6imkjm3v6mb6xnkmf8svqkg1825hd18g34"; depends=[Rcpp]; }; + extraDistr = derive2 { name="extraDistr"; version="1.8.5"; sha256="021sg4jkn817nvsi9z69pd96flk7az7qi8amgwfcpr15kjb8655n"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; extracat = derive2 { name="extracat"; version="1.7-4"; sha256="1dply8sx9r9vshi5dycxs7bchf5g33qbq7w6i5w830glfy0lk3i5"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; }; extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extremeStat = derive2 { name="extremeStat"; version="1.3.0"; sha256="1hj78ks4wfb0awkpg4qyrhy7f9rz0rxl9ddgsas3730snyfhspx6"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; }; - extremefit = derive2 { name="extremefit"; version="0.2.0"; sha256="1zzwn6r6zmxzaiq4h5jclz4ys24j8ffzq194hkw72rzblyzj8gcz"; depends=[]; }; + extremefit = derive2 { name="extremefit"; version="0.2.2"; sha256="1mkmb3rz0v2wm5m323xqaic628jv6xnlrx4cm2dpgsxj2mkznmg7"; depends=[]; }; extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; }; extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; }; eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; }; @@ -5150,6 +5282,7 @@ in with self; { fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; + fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; }; fame = derive2 { name="fame"; version="2.21"; sha256="15pcgc67qcg6qkgssbfissicic317v60jsybp86ryqvzqg70cqx3"; depends=[tis]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.1"; sha256="1vnxn5zl1j8209dyrwq3919hivab09f0jq4v9h7v0wlqk1hy5ich"; depends=[]; }; @@ -5177,10 +5310,11 @@ in with self; { fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; }; fastcox = derive2 { name="fastcox"; version="1.1.1"; sha256="1a5i0ragl0r6p29iamkn04igakiwyysykfbs2p6ybgy8pfdq69sv"; depends=[Matrix]; }; fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; - fasteraster = derive2 { name="fasteraster"; version="1.0.4"; sha256="0xxfwgzf6xbk4sajchaz7wjppg6cs1vkb00wiwsqmjm2yr48yp0m"; depends=[Rcpp]; }; + fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; }; fastnet = derive2 { name="fastnet"; version="0.1.2"; sha256="124nbvxhrx2nnyzcbr602fpay1zq9fibg1k33f2pkl8pwk87s14q"; depends=[doParallel foreach igraph]; }; fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; }; + fastqcr = derive2 { name="fastqcr"; version="0.1.0"; sha256="0hzlp66as7k0bh3biqkngacpkq1hi3y3gp6wg4c5476ywzm83gra"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.2"; sha256="1xqr4azc5gsr7kcm8qzwjpjy72w1b111i61wbm35vns9r38a6cxz"; depends=[kinship2 multgee]; }; fauxpas = derive2 { name="fauxpas"; version="0.1.0"; sha256="1mi19zrgkx25g8j1f948n0ps27dn0rr2jqnhf15w73lpsjbwvi54"; depends=[httpcode R6 whisker]; }; @@ -5192,14 +5326,14 @@ in with self; { fbroc = derive2 { name="fbroc"; version="0.4.0"; sha256="0bxi027iqqn50mn5nrlgx3z4qdlfkrq88s0dqyaxdl8rsrwp3d2w"; depends=[ggplot2 Rcpp]; }; fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fclust = derive2 { name="fclust"; version="1.1.2"; sha256="08gi7w74215r44qbysg233s5n8r905b66gsi4i66xf5r7zgaqsm0"; depends=[]; }; - fcros = derive2 { name="fcros"; version="1.5.2"; sha256="0ggg8jyzdsy5ihhs4hqjjj5v0sh1ln4n7380b1z1rafjfr9j2hwv"; depends=[]; }; + fcros = derive2 { name="fcros"; version="1.5.4"; sha256="112mgs69p3642rfk1w3dkkyn72icvda0asllanmgjym1lrzdp0lj"; depends=[]; }; fda = derive2 { name="fda"; version="2.4.4"; sha256="05rvrp29ip1wrk2wly06wdry2a2riynkx677nx5lg240lz12d6yw"; depends=[Matrix]; }; fda_usc = derive2 { name="fda.usc"; version="1.3.0"; sha256="1ask7g6mqwx8r1hd9vxzdl96z0gyqprswjpfcl7l5l3611m7mzdm"; depends=[fda MASS mgcv nlme rpart]; }; - fdaMixed = derive2 { name="fdaMixed"; version="0.4"; sha256="15m13v71kqxd9gqiymgfkq0dvcpzp05576m8zkg08m0k067ga9bd"; depends=[Formula Rcpp RcppArmadillo]; }; + fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; }; fdaPDE = derive2 { name="fdaPDE"; version="0.1-4"; sha256="0n72x5h00n17yxjniim2qxz2phy1srk04dn6ivvc58k3x252fzkh"; depends=[RcppEigen rgl]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdapace = derive2 { name="fdapace"; version="0.3.0"; sha256="1r4s20spsiags7z8hyvbvi9gxjxs4v8hfnrqya872shagk9iadyl"; depends=[Hmisc Matrix numDeriv pracma Rcpp RcppEigen]; }; - fdasrvf = derive2 { name="fdasrvf"; version="1.7.0"; sha256="0701ishhbxqjapin0c780m92pl02x4xvfvnsmydn0s6fqbxvxb1v"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo]; }; + fdasrvf = derive2 { name="fdasrvf"; version="1.8.0"; sha256="1q38wbvpd8bp3dycvb476g92r9wdsms1h036li2c8z546f271jip"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo viridisLite]; }; fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.0.0"; sha256="1m6yk6ngsxrz5mywp3vqhfjpkskrzgdyvqw7j8k2jgy4l0x04g5g"; depends=[corrplot matlab]; }; fdq = derive2 { name="fdq"; version="0.2"; sha256="1iyplxm6niywfhmdnliy9nvvax1w6sijar8gpsj853cdfvn6kz5m"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; }; @@ -5216,31 +5350,31 @@ in with self; { federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; + fetchR = derive2 { name="fetchR"; version="2.0-0"; sha256="1fwyv7wynchgyn7s0b4xdld5hk6clsfxhf33zk99vasgm615iizx"; depends=[plotKML rgdal rgeos sp]; }; ff = derive2 { name="ff"; version="2.2-13"; sha256="1nvd6kx46xzyc99a44mgynd94pvd2h495m5a7b1g67k5w2phiywb"; depends=[bit]; }; ffbase = derive2 { name="ffbase"; version="0.12.3"; sha256="1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"; depends=[bit fastmatch ff]; }; ffmanova = derive2 { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; }; ffstream = derive2 { name="ffstream"; version="0.1.5"; sha256="1q07b1wdyhbvn3784lwwz3jk591cz1rv1jnf36q1piscsb3v7ayk"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-3"; sha256="01nncrf2p0yq49lhd5aq4hvhp87f25r0x7siqnaldv5zq24krl30"; depends=[]; }; - fftwtools = derive2 { name="fftwtools"; version="0.9-7"; sha256="1pd6ri9qh8rj5dahznl38l6haa1x6f2w91mxi83lic76lpddnxly"; depends=[]; }; + fftwtools = derive2 { name="fftwtools"; version="0.9-8"; sha256="1nqvpzda281rxi1cmwajxxsn3sc3gz7scv8bvs5jm34kf36whha6"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive2 { name="fgui"; version="1.0-5"; sha256="0gzwxzvf2y9p5rlfk862d7l1dm2sdwjhjpcb8p494cj4g1xshazg"; depends=[]; }; - fheatmap = derive2 { name="fheatmap"; version="1.0.1"; sha256="1ir666zwlrw00c8pzm7np91n8qajc4w38pkmn2r12zpmcivqhvpk"; depends=[gdata ggplot2 gplots RColorBrewer reshape2]; }; fields = derive2 { name="fields"; version="8.10"; sha256="1vr0iil04jcqgsm2s3cgcldg8p4jc6avwwp0zrsdixbr9rgqcz20"; depends=[maps spam]; }; fiery = derive2 { name="fiery"; version="0.2.2"; sha256="1dinlrxal5rm16xvfripj8l3q15yfxkgj2qn2hihf03k0pj50lb2"; depends=[assertthat future httpuv R6 stringi uuid]; }; fifer = derive2 { name="fifer"; version="1.1"; sha256="1gcv8ns4c1y3pjmixdm16raa5h6jqmc3i4m37ahj97l720j1f2ya"; depends=[fields Hmisc MASS party plotrix randomForest randomForestSRC rpart xtable]; }; fiftystater = derive2 { name="fiftystater"; version="1.0.1"; sha256="1nri9vsqif03xrmm3g5llasqm49hj169mgv046f2l0mh9vp0fqpc"; depends=[]; }; - filehash = derive2 { name="filehash"; version="2.3"; sha256="1nvf7qbnn6vjz68303xdm190iq0nwmmghyydcb4amx1ckbgric33"; depends=[]; }; + filehash = derive2 { name="filehash"; version="2.4-1"; sha256="1x7an7rsy5pz2qr86m511rsv297vacxwk3y1a71754yq739qgq6h"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; filematrix = derive2 { name="filematrix"; version="1.1.0"; sha256="1z1nlpmckmh96zfc17gkgagagzz84ih6sjy4b8vfv1nzfipprsfy"; depends=[RSQLite]; }; filenamer = derive2 { name="filenamer"; version="0.2.1"; sha256="0xahzjgwfpyln6i2szr985csw11w8wwk644sgclwly9l2yqzsi3i"; depends=[]; }; fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; }; files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; }; - filesstrings = derive2 { name="filesstrings"; version="0.3.1"; sha256="1vzvs43wzlivgyazinavxbhzca5ffz7a1q7hnbcl8mp1y9vnwski"; depends=[dplyr magrittr matrixStats ore Rcpp readr stringr tibble]; }; + filesstrings = derive2 { name="filesstrings"; version="0.4.0"; sha256="0n3h8ggbk44k08xnziq7rfwn0xx50izblxlhpv68bp6aaq1hs0by"; depends=[dplyr magrittr matrixStats ore Rcpp readr stringr tibble]; }; financial = derive2 { name="financial"; version="0.2"; sha256="1v6jgs3rq57byin5mynslfjk3zrx91qz36558nn17mv6z0qsf10v"; depends=[]; }; finch = derive2 { name="finch"; version="0.1.0"; sha256="0pqli6l049s9pdk0gphch1pw8i0f1fr3562akms1x7hvdkn9c0i9"; depends=[data_table digest EML plyr rappdirs xml2]; }; - findpython = derive2 { name="findpython"; version="1.0.1"; sha256="0fa01znc9cckj4ay4zmwmssm2lkhmsw6h07y1pwgd6z1b2pj7bns"; depends=[]; }; + findpython = derive2 { name="findpython"; version="1.0.2"; sha256="1x38dbxr6yvxy2z2fvv00y263g66ljbzf3a8znl2fywj462i92xk"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.4"; sha256="0raxsyni8kbq7q2sfkp4bx6mh8wdk9mxplzi4fbqcf78cxk9bla7"; depends=[]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; @@ -5248,19 +5382,19 @@ in with self; { fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; - fishmethods = derive2 { name="fishmethods"; version="1.10-0"; sha256="1sr5f1yg55qirk9afamb7nq142y7l5j93c04a6xyhmkrgf5kcs0p"; depends=[boot bootstrap lme4 MASS]; }; + fishmethods = derive2 { name="fishmethods"; version="1.10-1"; sha256="0578z2qpm3bi7wsh1f9ssvxjwc2k34rvagaxcg574rsw973pmsm5"; depends=[boot bootstrap lme4 MASS]; }; fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; - fit_models = derive2 { name="fit.models"; version="0.5-10"; sha256="06pj26dbnq6mf9wxinvjzwyn36656f66a4bmky36r7fzi92gf3d8"; depends=[lattice]; }; + fit_models = derive2 { name="fit.models"; version="0.5-14"; sha256="0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"; depends=[lattice]; }; fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; }; fitDRC = derive2 { name="fitDRC"; version="1.1"; sha256="1f6avw8ia9ks17zdagpmh6yvcmi53h5cvm0wwv9hsb92x5zfhxn9"; depends=[]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; - fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.7"; sha256="1bam6hj3cqi5bw1zx4gkl62lzdy40pr3g7f6v36bwkczccasxrwr"; depends=[httr jsonlite stringr]; }; + fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; fitcoach = derive2 { name="fitcoach"; version="1.0"; sha256="1nnd7g093qjlbyrdai78gpbs0xjqlfdjn1v786v7966rzp83xfkg"; depends=[caret dplyr gbm ggplot2 httr jsonlite plyr R6 reshape2]; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; - fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-8"; sha256="0h6b5zp5z2g87vz1zv4k7b0rl8rh17vs2ca0i2v583v0b4si7hz4"; depends=[MASS survival]; }; + fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-9"; sha256="18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"; depends=[MASS survival]; }; fitplc = derive2 { name="fitplc"; version="1.1-7"; sha256="1dffgqsml6cj6ayqdpr0330kj8v57jwi3pgchb8v98rainygsyfw"; depends=[car nlme]; }; - fitur = derive2 { name="fitur"; version="0.1.0"; sha256="1k4c6n36s324akscm0mkyw68hxmh52kh0l01kyw18mxlbr3d0rhq"; depends=[fitdistrplus]; }; - fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.1.0"; sha256="0fcc8rq745nsghp27dk0lgih90y4zx8hrzcvsn6ih786yv7qxhvl"; depends=[]; }; + fitur = derive2 { name="fitur"; version="0.2.0"; sha256="01jljffkfpzfhasywf1xslas5gsls5b864xjczws28ahy61jnz5b"; depends=[actuar fitdistrplus]; }; + fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.2.0"; sha256="0w8m9g2y6282xlnais922n0jymv4zsh21z5lgqk8dzh1gpw3wbi2"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.4"; sha256="1hfh71s1qb0v7ip1v5gibgdpqq4sa3cz22kwszj1pprlfp711vvg"; depends=[BBmisc checkmate mlr]; }; @@ -5272,10 +5406,11 @@ in with self; { flexCWM = derive2 { name="flexCWM"; version="1.7"; sha256="0kgvj3l4cscr1p3305mnz42km5i8280wrvxp317dif3pvq7iigi4"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexPM = derive2 { name="flexPM"; version="2.0"; sha256="0h3qs9w9pc2nc24q1diz7j3s93y40ijpmgq2l0xg9mzcgjz9kz8c"; depends=[survival]; }; flexclust = derive2 { name="flexclust"; version="1.3-4"; sha256="1x9gyg69kb3wn02w885kl6hcwpf2ki66gzfayvc83jisrwxvdfvv"; depends=[lattice modeltools]; }; - flexdashboard = derive2 { name="flexdashboard"; version="0.4"; sha256="0zb0k4mph4d9rqq655dj8mma51r77v716xrpwj4ypgs66ni08c1l"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; + flexdashboard = derive2 { name="flexdashboard"; version="0.5"; sha256="1dv1h32diff7174mxw2n3l2216crnyb6c38qbrramhj5w72zf3da"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexmix = derive2 { name="flexmix"; version="2.3-13"; sha256="1i205yw3kkxs27gqcs6zx0c2mh16p332a2p06wq6fdzb20bazg3z"; depends=[lattice modeltools nnet]; }; flexrsurv = derive2 { name="flexrsurv"; version="1.3.3"; sha256="0dkm2fdr76k2l6b02r9gxqm585x243cddvj14rw1gck570z6grnf"; depends=[Epi matrixcalc orthogonalsplinebasis survival]; }; - flexsurv = derive2 { name="flexsurv"; version="1.0.0"; sha256="0lzcbfwxwvh7dm743mvmkz3d35z6gf0az4mn4x0sbv318j2bg0hr"; depends=[deSolve mstate muhaz mvtnorm quadprog survival]; }; + flexsurv = derive2 { name="flexsurv"; version="1.1"; sha256="1vj8zsfgq2rv6v7na4w7n7z3farc69qsavm7pnmnhkaylz61gq26"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival]; }; + flextable = derive2 { name="flextable"; version="0.1.0"; sha256="05mhfpn99sn6gzrcmdx4xrrd6kwklfqvm8ckvp1zi0fxm5illw8q"; depends=[dplyr gdtools htmltools htmlwidgets lazyeval magrittr officer purrr tibble tidyr]; }; flifo = derive2 { name="flifo"; version="0.1.4"; sha256="1yilfnblarimc8mlvvwsgib5sxcfgvgsvgpyzddxb39g6fb7lffs"; depends=[bazar pryr]; }; flip = derive2 { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; }; flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; }; @@ -5294,10 +5429,12 @@ in with self; { fmdates = derive2 { name="fmdates"; version="0.1.2"; sha256="0j79a6dc9bxhfxki77fmvn36x73kgpqym1m46pj74jzyz32sb05h"; depends=[assertthat lubridate]; }; fmri = derive2 { name="fmri"; version="1.7-2"; sha256="1ifp0fkmr0bj5vkg9vh0lk74f04fk0zc90vknmjmxd2hbdb5kh4r"; depends=[awsMethods metafor nlme]; }; fmrs = derive2 { name="fmrs"; version="1.0-9"; sha256="1x9g67701kcnz3p97iynr74sn0mfpxpp16mv1l4zxlhhfn2v5lwx"; depends=[survival]; }; - fmsb = derive2 { name="fmsb"; version="0.5.2"; sha256="0y3sx4lmn05rwaywlyckl3l8ds21p6zjbbw47zqlh0kgcbiv1q1a"; depends=[]; }; + fmsb = derive2 { name="fmsb"; version="0.6.0"; sha256="1dn5a7pvfy0mil5f0wspaqiaq90ylhxw36cr42lk60irdgmmrsfj"; depends=[]; }; fmt = derive2 { name="fmt"; version="1.0"; sha256="13gsywnyvf9zy5n644g2xyd60f92w2dp7vil2dncjvjcqsib22a0"; depends=[]; }; foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; }; + focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="0.4.2"; sha256="0wskaky1jb9yqz0ds1hjrvdfdxdsmbfx730257z9xsyip1fwlic4"; depends=[clisymbols crayon curl dplyr httr lazyeval magrittr rvest tibble tidyr xml2]; }; + fold = derive2 { name="fold"; version="0.1.1"; sha256="0n4wd918xbcjinf6bzjpq6afvdj1a965m17q96khr5yk0blc3qyd"; depends=[csv dplyr encode lazyeval tidyr]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; }; @@ -5310,7 +5447,7 @@ in with self; { foreach = derive2 { name="foreach"; version="1.4.3"; sha256="10aqsd3rxz03s1qdb6gsb1cj89mj4vmh491zfpin4skj1xvkzw0y"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; forecast = derive2 { name="forecast"; version="8.0"; sha256="0hmdas2vybv2057d33vqqsb4w9npn15a5kqcg2rvy0m2p0c66ibm"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries zoo]; }; - forecastHybrid = derive2 { name="forecastHybrid"; version="0.3.0"; sha256="1j5mfmdi6ky6ssai3lv2x7n09i93hpl5r1068qlm32mijf4yylbs"; depends=[forecast ggplot2 reshape2]; }; + forecastHybrid = derive2 { name="forecastHybrid"; version="0.4.0"; sha256="0gjjrq12b6r86asrawf4v7r13k1hv5q9km0g7fcjjinq3b32pn9r"; depends=[forecast ggplot2 reshape2 zoo]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.1-1"; sha256="1rmar6qfiw9hszwqp988csvwsq8q72d39a2xmr9yq36llnbg6i5p"; depends=[Rcpp]; }; forega = derive2 { name="forega"; version="1.0"; sha256="0xf9almfikfkxq8mm09lzrvav2v5cg0avpz99i6h5i9qliix1q6r"; depends=[forecast Rcpp robfilter]; }; foreign = derive2 { name="foreign"; version="0.8-67"; sha256="1mcrm2pydimbyjhkrw5h380bifj1jhwzifph1xgh90asf3lvd1xd"; depends=[]; }; @@ -5318,7 +5455,7 @@ in with self; { forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; forestFloor = derive2 { name="forestFloor"; version="1.9.5"; sha256="09xwk42qkwq47bpybnxbr1flraadmxp7bp9r1ii1zvmcp3zgxqcl"; depends=[kknn Rcpp rgl]; }; forestinventory = derive2 { name="forestinventory"; version="0.1.0"; sha256="1hd56w1lzq6mfsikvcxdyh1l51fhw5wy9fy99v48i1hy87qx7p3d"; depends=[plyr]; }; - forestmodel = derive2 { name="forestmodel"; version="0.4.0"; sha256="1csw85zmj39zk3qr0238xjxj9qvp4fda62cqiliy5qm3a68kgpk3"; depends=[broom dplyr ggplot2 lazyeval]; }; + forestmodel = derive2 { name="forestmodel"; version="0.4.3"; sha256="1v1m8dvird2r1jqig492msqpp9sb4s79bhgnrs9y2c0ba46jzykh"; depends=[broom dplyr ggplot2 lazyeval]; }; forestplot = derive2 { name="forestplot"; version="1.7"; sha256="0sxbh7chmy3aixvwks2mzzx0n6h9zkk6c4nsw3ihll213x8pph4q"; depends=[checkmate magrittr]; }; formatR = derive2 { name="formatR"; version="1.4"; sha256="1fvynq0fj1r9grg9vvfdh5fl2riv6qki9f2rfpyvbvqq3xxpmi3f"; depends=[]; }; formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; }; @@ -5332,6 +5469,7 @@ in with self; { fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; fpc = derive2 { name="fpc"; version="2.1-10"; sha256="15m0p9l9w2v7sl0cnzyg81i2fmx3hrhvr3371544mwn3fpsca5sx"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; + fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; }; fpp = derive2 { name="fpp"; version="0.5"; sha256="1jqnx6bgpvnbbj2fa2b6m6aj8jd5cb9kz877r8kp7a5qj62xv1ww"; depends=[expsmooth fma forecast lmtest tseries]; }; fpp2 = derive2 { name="fpp2"; version="2.0"; sha256="1fpph63rzchy98v4skc396swbmmnpjmfkfidk9xs5mfibs66594b"; depends=[expsmooth fma forecast ggplot2]; }; @@ -5343,10 +5481,11 @@ in with self; { fractalrock = derive2 { name="fractalrock"; version="1.1.0"; sha256="15f4w8hq3d8khgq269669ri16qxhar9646w40cw7wzh79r9gpf00"; depends=[futile_any futile_logger quantmod timeDate]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fragilityindex = derive2 { name="fragilityindex"; version="0.0.8"; sha256="07d7rx2iymp3w1rmzd9n2r8ydjldxxfpp8a56pw6srlnjj4xi80a"; depends=[pbapply stringr survival]; }; + frailtyEM = derive2 { name="frailtyEM"; version="0.5.4"; sha256="0bc3cd5clk6mxrq8kra50bkj6wgl3q1mvbf1s5kz40xbra1kk5nn"; depends=[magrittr msm optimx Rcpp survival]; }; frailtyHL = derive2 { name="frailtyHL"; version="1.1"; sha256="1xjdph0ixanf9w4b6hx6igfhkcp8h93sclrg0pgqgmbvm41lhb1x"; depends=[Matrix numDeriv survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.2"; sha256="0qsq96p29rxlfkhbmg8cfqdnpzh8wq2nadpiim9d6l0bs20r51gl"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; - frailtypack = derive2 { name="frailtypack"; version="2.10.5"; sha256="1hlbbkagy1hy3yrlabq4r8rn0hzsyhabj0zfj6z37r4a3a0hp5fm"; depends=[boot MASS nlme survC1 survival]; }; - frair = derive2 { name="frair"; version="0.5"; sha256="1fdyvv75mgdwn5csi2wgy4cadw753q941jzpycvjfln77n9nixci"; depends=[bbmle boot lamW]; }; + frailtypack = derive2 { name="frailtypack"; version="2.11.1"; sha256="1gw0kpkf4a47j6m651nqqdrxxbcqfhy78623pfw1ag06w0kwip1p"; depends=[boot MASS nlme survC1 survival]; }; + frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; }; frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; }; freeknotsplines = derive2 { name="freeknotsplines"; version="1.0"; sha256="19zs42q9njknirdbrbnp8bv4vr32kd8wxmkqj0a0nh06i5fcx67r"; depends=[]; }; @@ -5356,18 +5495,18 @@ in with self; { freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdom = derive2 { name="freqdom"; version="1.0.4"; sha256="0flx4316q8m9v5zy8bxjp18a25p1vwq6wvfs81r0g609ag54vy5b"; depends=[mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; - freqweights = derive2 { name="freqweights"; version="1.0.2"; sha256="183x94j727z6phayy0zy9q4x5fnww8h51ghpmc6jbwc5r40vp4px"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; + freqweights = derive2 { name="freqweights"; version="1.0.3"; sha256="1yp1msb9mmndi0snchmbi3ssqnshjmn3sllmq7l5ipk9si6h3062"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; frmqa = derive2 { name="frmqa"; version="0.1-5"; sha256="0vd5jnjzhkc0vd4cqn4cs6a3limd4fxwyb5i7845rwmkzk1944aj"; depends=[partitions Rmpfr]; }; fromo = derive2 { name="fromo"; version="0.1.3"; sha256="132i9z8zwjm8a7fw5mdqq0a3q8hd985mrifg67lddqkxwgc8lxcc"; depends=[Rcpp]; }; - frontier = derive2 { name="frontier"; version="1.1-0"; sha256="0k2ap22qddzki63biikr1jzi5vmqz4j06d7qrf1y8axdq1q1cr44"; depends=[Formula lmtest micEcon miscTools moments]; }; + frontier = derive2 { name="frontier"; version="1.1-2"; sha256="1vpjd57cc6niwqibhz1ib46zj57d5a9m40yaq7kr9awk9di65ryz"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.1"; sha256="19g0vcgbq3l9b9x264jg5q17lrky7xrznc8wjxkvnjqdykjmzjhp"; depends=[caret gsubfn hmeasure]; }; fsia = derive2 { name="fsia"; version="1.1"; sha256="18pblp22rfaklv283515qrx8liaqf84mm8gw9pj70qi068nw36x8"; depends=[]; }; - fslr = derive2 { name="fslr"; version="2.0"; sha256="010kd7h5dfqqq4vxhkyf11sg8aj5jhk92953y0jfln24z6qbkz5m"; depends=[matrixStats neurobase oro_nifti R_utils]; }; + fslr = derive2 { name="fslr"; version="2.12"; sha256="1ivjza08qxa8dfgyvcikrggivzd1kb2anqj907hj5g8rsqfjdrrs"; depends=[matrixStats neurobase oro_nifti R_utils]; }; fso = derive2 { name="fso"; version="2.0-1"; sha256="02dr12bssiwn8s1aa1941hfpa4007gd65f3l4s74gs2vgjzdxf8s"; depends=[labdsv rgl]; }; fst = derive2 { name="fst"; version="0.7.2"; sha256="1y2yzx8bwn747vibi0dds1m1rwyy588nppvbgp4bars1w3h4pps5"; depends=[data_table Rcpp]; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; @@ -5376,13 +5515,14 @@ in with self; { ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fueleconomy = derive2 { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; }; fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; }; - fullfact = derive2 { name="fullfact"; version="1.1"; sha256="1pnz1gykmvxdwf1a3n1z4v9md6kjlai4fvzqjzcyshw5nq81dciw"; depends=[afex lme4]; }; + fullfact = derive2 { name="fullfact"; version="1.2"; sha256="13729m2s8b32d9i9c6g2r0zkcqsw9p7nhdig8isarfn4bjzqhf71"; depends=[afex lme4]; }; fulltext = derive2 { name="fulltext"; version="0.1.8"; sha256="14gvhjc9433hnb5dh88svxyahbcv968njxjfwgc5ii9lpcpw5935"; depends=[aRxiv digest httr jsonlite magrittr R_cache rcrossref rentrez rplos rredis tm whisker xml2]; }; fun = derive2 { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; }; funData = derive2 { name="funData"; version="1.0"; sha256="13f6jlw3g7glz5anlwmj7g64kia18ldm3nfj55qybjfh4b6rh7v3"; depends=[abind fields foreach]; }; funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; }; funHDDC = derive2 { name="funHDDC"; version="1.0"; sha256="038m64yv27wz7ki2gcn94q011p8mv0ggmli5n27y0f5bnkfh6d6w"; depends=[fda]; }; - funModeling = derive2 { name="funModeling"; version="1.6.1"; sha256="18lhvp0i7lfbhyg4ry24qk06nfmsqlgb8qr1ag7hwwsxxssjhmxb"; depends=[dplyr ggplot2 gridExtra Hmisc lazyeval pander RColorBrewer reshape2 ROCR scales]; }; + funModeling = derive2 { name="funModeling"; version="1.6.2"; sha256="1ivsh5ilzxjsi8365cpvz72kh4vk4cg842bmc1dxazyrnwanilbv"; depends=[dplyr ggplot2 gridExtra Hmisc lazyeval pander RColorBrewer reshape2 ROCR scales]; }; + funchir = derive2 { name="funchir"; version="0.1.4"; sha256="1mbsy65628q117c2k01wvibpjd3ibigy4yc1c8m0rf9jwsc67qjb"; depends=[data_table]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; }; funcy = derive2 { name="funcy"; version="0.8.6"; sha256="0wlcwwmv92djj35i7nnfns5l79fca6hsfrjxgsqmwgjb28gy19bs"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; }; @@ -5391,20 +5531,21 @@ in with self; { funrar = derive2 { name="funrar"; version="1.0.2"; sha256="0qxhlqc1i0w91xmqawbsqk7gh8fdxq165qrjkbprsw548p5jbdbn"; depends=[cluster dplyr]; }; funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; }; funtimes = derive2 { name="funtimes"; version="4.0"; sha256="0a0xpybalk38p3n0fd5f3g4yav99j6ck03d1pkx0w2yqqxnviqhw"; depends=[dbscan Jmisc Kendall]; }; - furniture = derive2 { name="furniture"; version="1.4.1"; sha256="1bziqav2y7h7fkv84ci3p483zbn2rw0wr0cz6jc5a9h8g1gz80cl"; depends=[knitr]; }; + furniture = derive2 { name="furniture"; version="1.5.0"; sha256="1x0r22hblqlbialpp9vr41ngyrcffqy86d79vhazk3lcdks5hh1s"; depends=[knitr]; }; futile_any = derive2 { name="futile.any"; version="1.3.2"; sha256="09z12dlj7cnkfwnmgsjknsghirv1cry83w4a9k4d0w5a1jnlr5jg"; depends=[lambda_r]; }; futile_logger = derive2 { name="futile.logger"; version="1.4.3"; sha256="1r3nayk0z9n1svbf8640vw90dal5q07nkn0gv4bnva3pbzb352sy"; depends=[futile_options lambda_r]; }; futile_matrix = derive2 { name="futile.matrix"; version="1.2.6"; sha256="10v7ffjm8az75lb39526p3y8b1zhmmzx07pybiy20zydznhyvv2p"; depends=[futile_logger lambda_r lambda_tools RMTstat]; }; futile_options = derive2 { name="futile.options"; version="1.0.0"; sha256="1hp82h6xqq5cck67h7lpf22n3j7mg3v1mla5y5ivnzrrb7iyr17f"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; - future = derive2 { name="future"; version="1.3.0"; sha256="00ys5h583s9kr415l6mv79k2s63b13jk7kjrvfmzskzvxrgqizm4"; depends=[digest globals listenv]; }; - future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.13.1"; sha256="0w3mbrqxy7w7rl2blka81djmlgj6yffxssn56f0xfwfwhbhsn1pc"; depends=[BatchJobs future R_utils]; }; + future = derive2 { name="future"; version="1.4.0"; sha256="05lbagy57bazm991pm3p76d5w627cxhyrsjl18h001xvqv7k1hix"; depends=[digest globals listenv]; }; + future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.14.0"; sha256="155dvfrw94bki0z5aavyxahw3ks70aadw47gi9a9432dfxr2fmjg"; depends=[BatchJobs future R_utils]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.0"; sha256="0m5x3khps7mk43xvk76jqylcxs9581y1ppr58bq68j4rqraq3r1s"; depends=[assertthat progress purrr]; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; - fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-7"; sha256="0mhml0zzya58yn4wrafxk62agfrck6rryn5klprr416pj83pzcgk"; depends=[]; }; + fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-10"; sha256="1xj5xsm2s4ylv3b8v80qny201iddjym07h8d50asas7xy1k7945z"; depends=[]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.2"; sha256="11lgv9faq1avgvb58br2dbd46k7449v3y5cv0cjmlj63a6357lqw"; depends=[doParallel doRNG foreach ggplot2 randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.2"; sha256="1anipzcr5j5vp9p8hy16vdc7rf8kd0nm5r72j9998npad7k5xj8d"; depends=[dplyr geosphere purrr stringdist stringr tidyr]; }; + fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.0"; sha256="1ihbj0ydzy9lb79irgnfbgcnvxlhif8b02bdp5ajahg12brghvkb"; depends=[R6 reticulate]; }; fwdmsa = derive2 { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; fwsim = derive2 { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; }; @@ -5423,9 +5564,9 @@ in with self; { gRain = derive2 { name="gRain"; version="1.3-0"; sha256="0xb746pyh8k8w1a8nz7z41bflx5xr0cqdq5l5wj7j464zv2cw6jy"; depends=[functional graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; }; gRapHD = derive2 { name="gRapHD"; version="0.2.4"; sha256="0fxd04s6zh23chks4k6nwb5w408xjy89b44pa42kv6qnqj86ylvm"; depends=[graph]; }; gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; - gRbase = derive2 { name="gRbase"; version="1.8-1"; sha256="07b5vl55v04ycwwh92xp86c12kxvhrlbakjrlxrlq8i8drs3bpcj"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; + gRbase = derive2 { name="gRbase"; version="1.8-3"; sha256="143qvs5mwypswdq344a48kzn83sx9jskdr9w6kxa3fzhdcqlhi7d"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; }; gRc = derive2 { name="gRc"; version="0.4-2"; sha256="0cqc3s7a1njxzmnx7yx1yjkrazbai3gpw2kc4l7g49ld4j40bsln"; depends=[gRbase MASS]; }; - gRim = derive2 { name="gRim"; version="0.1-17"; sha256="0vn031r318kp78cx00n43fc42bv6sjyb8dm6q0l08s0g9n2w17dp"; depends=[gRain gRbase igraph Rcpp RcppArmadillo]; }; + gRim = derive2 { name="gRim"; version="0.2-0"; sha256="0ihl4vsnp6xkcpcf37p2xcqnbvyvjamcz5060f1kirn8xzwzq29y"; depends=[gRain graph gRbase igraph Rcpp RcppArmadillo]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="0.3"; sha256="0dcvnxldvxmmzaz4cqpr40jpmny5l012m6j7xd5954bgfg06gs7w"; depends=[]; }; gTests = derive2 { name="gTests"; version="0.1"; sha256="19037qn7q92dykry4wrnbdg7irkzk2vwz1j0kq2r836m03bs04nc"; depends=[]; }; @@ -5465,27 +5606,27 @@ in with self; { gamreg = derive2 { name="gamreg"; version="0.2"; sha256="0k6npl5m1i22lgdvfjnv00pxaxh7qfd6sddy6raf4j33i6hp6ff6"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.7-3"; sha256="02j94va7srdb2wzj4f1b63qx9mlck0harsq140ndjgf9d9c44h01"; depends=[foreach mda]; }; gaoptim = derive2 { name="gaoptim"; version="1.1"; sha256="04igpn73k6f6652y496igwypfxmz4igg4jgxx6swqyi37182rqhm"; depends=[]; }; - gap = derive2 { name="gap"; version="1.1-16"; sha256="0xyln7ffapm31cvx4n86ncyg3cdz5d2149qb5h5xx3kf0a8r7gpz"; depends=[]; }; + gap = derive2 { name="gap"; version="1.1-17"; sha256="0pkimpjrdbz04yh2z9n3hbhn4gkpwgx5w9nkj8zqv773qsdj8h5c"; depends=[]; }; gapfill = derive2 { name="gapfill"; version="0.9.5-2"; sha256="1qmkr0yvc9akjaj30lxq2b4xrkxvdlmbkpk5zy89xvj6qnpdpb47"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.0.4"; sha256="0xz19n0vvdzbfg6afp3y0qfbs3f2nfxib1cyya3cax5wqqfbzw3i"; depends=[ggplot2 reshape2]; }; gapminder = derive2 { name="gapminder"; version="0.2.0"; sha256="1fxjz8lr3bsj3vml4yvm8pm72wpmw7c97bgp7acjf0q7l9x0d4vq"; depends=[]; }; gaselect = derive2 { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp RcppArmadillo]; }; - gasfluxes = derive2 { name="gasfluxes"; version="0.2"; sha256="01mqqj49p8z1m580a9fjrifyd7q2nl2qh8p3bxi2qqw38jxaccql"; depends=[AICcmodavg data_table MASS sfsmisc]; }; + gasfluxes = derive2 { name="gasfluxes"; version="0.2-1"; sha256="0cdqyyqb5dcn5978jmwmf06d9jcga5ma72zf3cdz72hbcil4f93k"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gaston = derive2 { name="gaston"; version="1.4.9"; sha256="13fb67lq30rv91q5ffwijm011dqflrvywlcd0s2caims6zsarbvz"; depends=[Rcpp RcppEigen RcppParallel WhopGenome]; }; - gatepoints = derive2 { name="gatepoints"; version="0.1.2"; sha256="03m84xixsardy4yjzf67qway07hwhjpzc92xgvg9kb7npiclq5bl"; depends=[]; }; + gatepoints = derive2 { name="gatepoints"; version="0.1.3"; sha256="02qxxf4a6rl3l0jdgqxmzxfnqd9lh5i0q2knaxxsiz0nd74c1jg5"; depends=[]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; - gazepath = derive2 { name="gazepath"; version="1.1"; sha256="0zq7bcld41737qk94gjbcphpirrnnf8k6z3f8l3jay2n47yn4gji"; depends=[jpeg scales SDMTools shiny zoo]; }; + gazepath = derive2 { name="gazepath"; version="1.2"; sha256="0h5a9bpgx268yh0zy3y4xfvij1ncx92x5qphjc94xmzbrl0br1mf"; depends=[jpeg scales SDMTools shiny zoo]; }; gb = derive2 { name="gb"; version="1.1.8-8"; sha256="18n9wqz82mjxjgzk8vc68kyz3b6lk21d2f16551d6fikjla03adf"; depends=[boot]; }; gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; }; - gbm = derive2 { name="gbm"; version="2.1.1"; sha256="0jkjr09w9cgfb21aznvr9nivxjmj1zxfsl7gafy4mwh719jzygy0"; depends=[lattice survival]; }; + gbm = derive2 { name="gbm"; version="2.1.3"; sha256="0ayrpq5qm18dsain088mbw0037bijxcy342grb6g2qnp67llpwpa"; depends=[lattice survival]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; gbutils = derive2 { name="gbutils"; version="0.2-0"; sha256="1hi2kq4m7lrhd9yikf4qb0xccr6v1pp7kmly5j68xd3m95fi86rc"; depends=[]; }; - gcKrig = derive2 { name="gcKrig"; version="1.0.1"; sha256="1iqbhfw4ib3lgjbaspjdh2qxif1inwly9fi8hyf4x6a153f20502"; depends=[Rcpp RcppArmadillo]; }; + gcKrig = derive2 { name="gcKrig"; version="1.0.2"; sha256="084rxc5dmnn1gdvfdhy48fyqrbcbbrjgs9sziv55c9r85hvn086c"; depends=[Rcpp RcppArmadillo]; }; gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; }; gcdnet = derive2 { name="gcdnet"; version="1.0.4"; sha256="0fmy0li06rahch4ir0xa81yilvrd0zqyhmpl4hfxjahhl3npw370"; depends=[Matrix]; }; gcerisk = derive2 { name="gcerisk"; version="16.1.3"; sha256="0bjd3paxf1jrirv2grq20rk40l7izbw2y2dnj687hwcgah5021gv"; depends=[cmprsk ggplot2 survival]; }; @@ -5497,14 +5638,15 @@ in with self; { gdata = derive2 { name="gdata"; version="2.17.0"; sha256="0kiy3jbcszlpmarg311spdsfi5pn89wgy742dxsbzxk8907fr5w0"; depends=[gtools]; }; gdimap = derive2 { name="gdimap"; version="0.1-9"; sha256="0ksbpcy739bvsiwis0pzd03zb4cvbd8d5wdf8whfn9k6mkj4x9rs"; depends=[abind colorspace geometry gridExtra gsl movMF oro_nifti rgl]; }; gdistance = derive2 { name="gdistance"; version="1.2-1"; sha256="1wygcx0iki7g10f9gjbycrjjadmsw3153ha9rnqvc9hwwf34m9y1"; depends=[igraph Matrix raster sp]; }; - gdm = derive2 { name="gdm"; version="1.3.1"; sha256="10lb4lk4gx26ksr1njfqg13by1mam609ysi5k44pfj55mwna7k9r"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; + gdm = derive2 { name="gdm"; version="1.3.2"; sha256="1fr9cgsw158zkvw5dsabyf5jhgrwp8k4qk43g9mhdp82szma759k"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; }; gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; }; gdns = derive2 { name="gdns"; version="0.2.0"; sha256="0cyyqmbdd520h8q6b9dficgh1vc8zf47bih72zdqbz2hrkjm4yc4"; depends=[httr jsonlite purrr stringi]; }; gdpc = derive2 { name="gdpc"; version="1.0.2"; sha256="03gh69vb3zmsi7rlikl3a7vr7sar3x12d8lar2qa0nfksn0qa6dk"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; }; - gdtools = derive2 { name="gdtools"; version="0.1.3"; sha256="1prh814lw3qkgnf0760cvpic1k68jhlkpcxlksv8chjkvsrnnf09"; depends=[Rcpp withr]; }; + gdtools = derive2 { name="gdtools"; version="0.1.4"; sha256="0l8c4bh6765x9s6rw3mfm1bgicdzdngir1kxh9pxx4sidrdndcip"; depends=[Rcpp withr]; }; gear = derive2 { name="gear"; version="0.1.1"; sha256="1sqj9pz15j1v6fm4q2dp0zhdmy9zmmhmgxjwria5ihrp3b5hvwry"; depends=[lattice optimx sp]; }; gee = derive2 { name="gee"; version="4.13-19"; sha256="14n2fa2jmibw5j8n4qgbl8xbxhapmx4z3zrmkbcci39k9dsyplzb"; depends=[]; }; + gee4 = derive2 { name="gee4"; version="0.1.0.0"; sha256="1vvzb9sc69g292zmh9djd15jgc7falypd5p7mzw6ps7mirpbnicf"; depends=[Formula Rcpp RcppArmadillo]; }; geeM = derive2 { name="geeM"; version="0.10.0"; sha256="0bk99kwh6xapkaxc3yis5x3d49j7pb45hq4ksbmkhz6ba21c4sn5"; depends=[Matrix]; }; geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; }; geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; @@ -5513,7 +5655,7 @@ in with self; { gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; }; gemlog = derive2 { name="gemlog"; version="0.20"; sha256="1f36p2ggba2rkkp7i6y9sgwjg2ygjhb01ww8adfivksgj103ww8v"; depends=[signal]; }; - gems = derive2 { name="gems"; version="1.1.0"; sha256="1ydc0qj9xhhshgpyd4f8l7ljk6mszn2n1sg9s5l4c4y87br2rfyn"; depends=[data_table MASS msm plyr]; }; + gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; }; gemtc = derive2 { name="gemtc"; version="0.8-2"; sha256="0c2a9gz6rvsc5qh66ixxa4dz6lwhcmmsf2vnvxl98c9kbvdwfqm9"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; }; gemtc_jar = derive2 { name="gemtc.jar"; version="0.14.3"; sha256="18hbiygpsv67flc4v6z6mir0rfq41v1vsh11dg9phmdr8bx4kcl1"; depends=[rJava]; }; genMOSS = derive2 { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; }; @@ -5551,21 +5693,23 @@ in with self; { geoGAM = derive2 { name="geoGAM"; version="0.1-1"; sha256="04qgkbqjzvm9pxazj96716hf5cviy08a12r782id77l61dd9ya3s"; depends=[grpreg MASS mboost mgcv]; }; geoR = derive2 { name="geoR"; version="1.7-5.2"; sha256="1sy968x154bsc3i3a6mxcwnyixcnmab5bc07dgibi9vzn0nkbbpb"; depends=[MASS RandomFields sp splancs]; }; geoRglm = derive2 { name="geoRglm"; version="0.9-8"; sha256="1zncqsw62m0p4a1wchhb8xsf0152z2xxk3c4xqdr5wbzxf32jhvh"; depends=[geoR sp]; }; + geoSpectral = derive2 { name="geoSpectral"; version="0.17.3"; sha256="13638j70j30icydcb0rydmdnmswf15skk646zra5y68n46mjvl68"; depends=[dplyr leaflet maps plotly rbokeh rgdal sp spacetime xts]; }; geoaxe = derive2 { name="geoaxe"; version="0.1.0"; sha256="043y7kb24hp66j7pnpqsdixvdmppwp72y8i4f8q7xrkhaqlfb93v"; depends=[jsonlite rgeos sp]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.1.5"; sha256="0zy9m5k4b359mn29cd62cnwjm4fc19hy3l8p587yrrhsi20nbyna"; depends=[fields lattice rgl]; }; geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; }; geohash = derive2 { name="geohash"; version="0.1.2"; sha256="1vwalnf5cbpbq5b68zc6qa8mm84v5zlb8s2pwg7j2f7s43y0mgwz"; depends=[Rcpp]; }; geojson = derive2 { name="geojson"; version="0.1.2"; sha256="0f8zimw50ryi776l5yxx5pi11559sa2278plvx289v3lfb20f7ii"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; }; + geojsonR = derive2 { name="geojsonR"; version="1.0.1"; sha256="0jjn1pknvg0kkq1jw4blf4ykfps4gcmhaz9piwmrg1hzfdfvf2zm"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.3.2"; sha256="10rnp4ws3465p8jv6b15zbl662swd373nmlbxxk3n8dy7049qwpj"; depends=[httr jsonlite magrittr maptools readr rgdal rgeos sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; }; - geoknife = derive2 { name="geoknife"; version="1.5.2"; sha256="19adj5v14cxi32iadi4xlbg8f94vx4ail7454i4jj61i9a426ag1"; depends=[curl httr sp XML]; }; + geoknife = derive2 { name="geoknife"; version="1.5.4"; sha256="09b3i67x6mr6wd4wrhyn7bngjqlsp4wv27dqsb4a4xv76kfxv30j"; depends=[curl httr sp XML]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; }; geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; }; geomorph = derive2 { name="geomorph"; version="3.0.3"; sha256="0nxbd2gsi9nd61blslq9jdg1y7n14yhdgkrnjg9cxqsmjg9d9gf4"; depends=[ape geiger jpeg Matrix rgl]; }; geonames = derive2 { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; }; geoparser = derive2 { name="geoparser"; version="0.1.0"; sha256="0gz808bab1axncccigs0ahvk3h2d3b77dwfhw2631fp6l706r839"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; }; - geophys = derive2 { name="geophys"; version="1.3-8"; sha256="0nw4m30r46892cf1n575jkfjgdjc14wic9xzmzcnskbk8cd50hp2"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; + geophys = derive2 { name="geophys"; version="1.3-9"; sha256="05q42b1pqfihamxbh5s5kxkrslr84j5p6y1cybmcl31z9dg92ccl"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; georob = derive2 { name="georob"; version="0.3-3"; sha256="0a4v0ik05bxzg9rxzwa1s2adm9ja9mzxh897kjxdk5qv9y5pgrkm"; depends=[constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; geosapi = derive2 { name="geosapi"; version="0.1-0"; sha256="04qab7qs22f1havziv5ynmrmdvi8539gjyfl83x5w5l44rjrx7lb"; depends=[httr openssl R6 XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; @@ -5581,7 +5725,7 @@ in with self; { gepaf = derive2 { name="gepaf"; version="0.1.0"; sha256="0ld7r0dkap7bpmb2fc8x0pzffvnlzp2q1bndx4l2ffiyygsq6f72"; depends=[bitops]; }; gesca = derive2 { name="gesca"; version="1.0.3"; sha256="1xr9kls6wdd1lnk4nrwix5p0dl93rl1zd3x88c0qyxzp11m2pcsf"; depends=[]; }; gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; }; - getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.1.4"; sha256="1j5l4ig1cwxbl2si0kq4b7jv5r9ma4df2zbsw81z9lnkykc638g5"; depends=[curl dplyr plyr purrr raster tidyr]; }; + getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.1.5"; sha256="0zbazv0xy8gx3cmhi9dbm01lgw0l3snawa2x0bmmxmv2dsxym9y9"; depends=[data_table dplyr httr plyr rappdirs raster tibble tidyr]; }; getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; }; getPass = derive2 { name="getPass"; version="0.1-1"; sha256="14s8s3zrl5iwr7pw000b8mwxy17caf42yl0lf56b3qa71ifzxbnc"; depends=[rstudioapi]; }; getlandsat = derive2 { name="getlandsat"; version="0.1.0"; sha256="0h2520r5sqyzsajqw2i86byw9zm5za27mhjkrzzw5vr5sh1vdiwb"; depends=[data_table httr rappdirs readr tibble xml2]; }; @@ -5590,9 +5734,10 @@ in with self; { gettingtothebottom = derive2 { name="gettingtothebottom"; version="3.2"; sha256="1cz2vidh7k346qc38wszs2dg6lvya249hvcsn6zdpbx0c0qs3y72"; depends=[ggplot2 Matrix]; }; gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; }; gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; }; - gfer = derive2 { name="gfer"; version="0.1.3"; sha256="1s6s0ng940spj1056z8jd0p3i34kzr1skzjr8w64x20kps1rvl9l"; depends=[httr jsonlite rvest stringi V8 xml2]; }; + gfer = derive2 { name="gfer"; version="0.1.6"; sha256="1lg6r4ymiaix24vg8jz3a4yb07fib9cxmyfblmvwxgdmflbswxad"; depends=[data_table httr jsonlite rvest stringi V8 xml2]; }; ggCompNet = derive2 { name="ggCompNet"; version="0.1.0"; sha256="1199n4s2rh5zg001l3j8wmc6fxkbkk5vzp4q5kg661k3khgx0hd5"; depends=[dplyr geomnet GGally ggmap ggnetwork ggplot2 gridExtra igraph network progress readr scales sna tidyr tnet]; }; ggExtra = derive2 { name="ggExtra"; version="0.6"; sha256="1f91hvay4r0ikn87n6grxl0s7c542rxg2h61s3k8qzrzshy1wnkj"; depends=[colourpicker ggplot2 gtable miniUI shiny shinyjs]; }; + ggQC = derive2 { name="ggQC"; version="0.0.1"; sha256="0sf7hq69nzdhbrx3rhw92mxqq3cm2wqa79csp9lsvx97gwb60sfl"; depends=[ggplot2 plyr reshape2]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; @@ -5600,16 +5745,17 @@ in with self; { ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.5.3"; sha256="1jgp55rvmzc4agcrlsjn8m5lk85di9c4wj94xzikqkql4lvq3qpd"; depends=[beeswarm ggplot2 vipor]; }; ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; }; ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; }; - ggdmc = derive2 { name="ggdmc"; version="0.1.3.5"; sha256="0idsmviv1znkgi5yzwbj7wnn7hy9jk83jwjzsh7h205gbkzqjn90"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; + ggdmc = derive2 { name="ggdmc"; version="0.1.3.9"; sha256="07a9g6kwq4hg5zlcxndwmyprl3di7fzsn2960qyixn5bzrfk7sh2"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; }; gge = derive2 { name="gge"; version="1.1"; sha256="04212spczyr2vqxki0n82ml26mgiq29i6mxyh06v42lqpg39sx19"; depends=[reshape2]; }; + ggedit = derive2 { name="ggedit"; version="0.2.1"; sha256="0l2ryp8xcyqsgfcywr3y6c2y8j42c15dyrcmfhfimbzy52bmnqxy"; depends=[colourpicker dplyr ggplot2 miniUI plyr reshape2 rstudioapi scales shiny shinyAce shinyBS]; }; ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggforce = derive2 { name="ggforce"; version="0.1.1"; sha256="0y49anv5sj1qn1ifcxg1krkkv4z3dlan5lya36vfmzzdamfgq5p6"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; }; ggfortify = derive2 { name="ggfortify"; version="0.4.1"; sha256="19jwcz1z6g7l65l6cj8zspypfb86pn3x18vzdcgf932n14g646d2"; depends=[dplyr ggplot2 gridExtra scales tibble tidyr]; }; ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; }; gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.1"; sha256="1h8qkagsfhk5gba7jgzwrvc6hrc492pp34kmzgr3n8d8bjzj45a3"; depends=[ggplot2 ggrepel]; }; - ggimage = derive2 { name="ggimage"; version="0.0.1"; sha256="1jy4zg3ipbqsj6kj87crkb26wjlwcbipkh3yjhp8fsx4cqdcdrz7"; depends=[EBImage ggplot2]; }; - ggiraph = derive2 { name="ggiraph"; version="0.3.2"; sha256="07r5kf2ky6b09hvd3zdahl9b9v2509k4yxf10mw6hag2bb4lmgcz"; depends=[ggplot2 htmltools htmlwidgets plyr rvg xml2]; }; + ggimage = derive2 { name="ggimage"; version="0.0.4"; sha256="1r9rl3sw5frncsq091924p5lk9z11inpvdk39byzabz2ybi6wzp8"; depends=[EBImage ggplot2 gridGraphics scales tibble]; }; + ggiraph = derive2 { name="ggiraph"; version="0.3.3"; sha256="0jiz51c9pzs7q8m2gnv3dzkiakr640bg61wayfbd4rq5y9b4ghan"; depends=[ggplot2 htmltools htmlwidgets plyr rvg xml2]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; }; gglasso = derive2 { name="gglasso"; version="1.3"; sha256="0qqp5zak4xsakhydn9cfhpb19n6yidgqj183il1v7yi90qjfyn66"; depends=[]; }; gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; }; @@ -5624,14 +5770,16 @@ in with self; { ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggpmisc = derive2 { name="ggpmisc"; version="0.2.14"; sha256="0747jmf8zvqc6zzglbpr2vizcy905zgc9hgdabgdkg4zhhmlcqys"; depends=[broom dplyr ggplot2 lubridate MASS plyr polynom splus2R tibble xts zoo]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; - ggpubr = derive2 { name="ggpubr"; version="0.1.1"; sha256="1r1hhlw2zz1n1grwddd45sssdgrv43wf4dj9vjdryssz44rvxs85"; depends=[ggplot2 ggrepel ggsci plyr]; }; + ggpubr = derive2 { name="ggpubr"; version="0.1.2"; sha256="1zh3c2w95s7pcnrlzawm7wjk9vab3dycb1x50594q3kf3bz4jiwv"; depends=[ggplot2 ggrepel ggsci plyr]; }; ggraph = derive2 { name="ggraph"; version="1.0.0"; sha256="0xkhqkckqz201601aqznrgnlgqzs7is1nfpdyalag58q5wl934j8"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; }; ggraptR = derive2 { name="ggraptR"; version="0.1"; sha256="060ksjq790rvv9kyyf6v6z0irawlw3hxaq8n0dvzmfkw58pk5fpd"; depends=[dplyr DT futile_logger ggplot2 ggthemes shiny shinyBS shinyjs]; }; ggrepel = derive2 { name="ggrepel"; version="0.6.5"; sha256="0lm78662p1iajkcvq82g08zsv3s4lfmkpggg1wk9wpvmk78yj2in"; depends=[ggplot2 Rcpp scales]; }; - ggsci = derive2 { name="ggsci"; version="2.0"; sha256="1045yi825lynw074cqi7r596ldbn7snj0rzdqcb5iwl5cn2s7gcw"; depends=[ggplot2 scales]; }; + ggsci = derive2 { name="ggsci"; version="2.4"; sha256="003gnm9kbip6days1rrkv3a31xmfia8yqql0qq4fis7yfs0w30ln"; depends=[ggplot2 scales]; }; ggseas = derive2 { name="ggseas"; version="0.5.1"; sha256="1r23j701rvia49si42fbi6zws7x9r92h1bcp0a15h28hpl7zlp7l"; depends=[ggplot2 seasonal zoo]; }; - ggsn = derive2 { name="ggsn"; version="0.3.1"; sha256="1q1bba9pcr51m7hxz07d0ycbl93ln4cgkkw17acbfipmbaack5f0"; depends=[ggplot2 maptools png]; }; - ggspectra = derive2 { name="ggspectra"; version="0.2.0"; sha256="0x0q7sa3i4z52wifbpi5q7hwqw79cz599f3mcln8qkd8fkz7fg96"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; + ggsignif = derive2 { name="ggsignif"; version="0.1.0"; sha256="0dxb6rh1i7c72lfyvcimian8pnryarh19wprxxzm3lv3812jgsyp"; depends=[ggplot2]; }; + ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; }; + ggspatial = derive2 { name="ggspatial"; version="0.2.1"; sha256="11vminz4kwv1ny4v9h23sp7j7d45q6v4804xv9fp04qgzbzi9lv8"; depends=[abind ggplot2 maptools plyr raster reshape2 rgdal rosm scales sp]; }; + ggspectra = derive2 { name="ggspectra"; version="0.2.1"; sha256="1q8l5zfkv4jzacb8pp7b2yp99ack4by4z2iw9l4j2n689v9wjs40"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands reshape2 scales tidyr]; }; ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="2.2.0"; sha256="0ddcbbgp8ni3zbz4ailqx79i16aa2x4z4gvz55f0b731bilczw86"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; }; @@ -5641,13 +5789,14 @@ in with self; { ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; }; giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; - gimme = derive2 { name="gimme"; version="0.2-0"; sha256="0x2j4041rah6bi99z8syypg3w8zzkdkxymmdz33rgc7azx799cps"; depends=[gWidgets igraph lavaan qgraph]; }; + gimme = derive2 { name="gimme"; version="0.2-1"; sha256="0h00hf27pbn7p1cp7n5j4nsdh8d372xkwian48xxpb1a7800afw3"; depends=[gWidgets igraph lavaan qgraph]; }; gimms = derive2 { name="gimms"; version="1.0.0"; sha256="0f959gr4nzf9p2gpvdrzlndp24g2hhzc0wbkgpbs056wp8ij0mws"; depends=[Kendall raster RCurl zyp]; }; + giphyr = derive2 { name="giphyr"; version="0.1.0"; sha256="0qwhsggqpd88vgifw6nab255cvkqq2bjp2ngfl0wl4ify2dxxwmh"; depends=[httr miniUI purrr rstudioapi shiny tibble]; }; gistr = derive2 { name="gistr"; version="0.3.6"; sha256="1rajdfb8zkx444v89iapzrdad8y81rhd9q9nwcxw03jig4xm48mb"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; }; git2r = derive2 { name="git2r"; version="0.18.0"; sha256="0bgzdsdi9n6l8pchivs6a2g4ksa56qs8hygpyv2c0ndqmx4jxcwi"; depends=[]; }; gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.1"; sha256="0vcc1s4ywaz8fjsg99knlxms4505wpvl08g48ndxcp3fqzvfc8i7"; depends=[curl data_table devtools httr jsonlite]; }; - gitlabr = derive2 { name="gitlabr"; version="0.6.4"; sha256="1x1s2wcfgzxbqjrrn9f5003q5x4ri19r6gbkd55qgqxnc1cg27gb"; depends=[base64enc dplyr functional httr magrittr stringr]; }; + gitlabr = derive2 { name="gitlabr"; version="0.7"; sha256="17l9y7ci4zl4r2j3g6m2jwl0wh5bi0w2pikrayhyda5137hf5lws"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; }; gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; gjam = derive2 { name="gjam"; version="2.1.1"; sha256="12r7amkzvklj4b52199hwwxgimvqgnbnylzdkxgfql9n8zcbgx3j"; depends=[MASS RANN Rcpp RcppArmadillo]; }; @@ -5659,7 +5808,6 @@ in with self; { glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.4.1"; sha256="0ycm3w8s5bm5w2lqy0qa877cwjcwc9x1zyyyrknwwjjxip250iaw"; depends=[e1071 lmom]; }; - gldist = derive2 { name="gldist"; version="2160.2"; sha256="1dcf3pb4xqvhqj4m3xc3ihzjbzxjspjrnc8819hmlnmdd0csghmx"; depends=[]; }; glinternet = derive2 { name="glinternet"; version="1.0.3"; sha256="1f3c4c8jjfslp5wc4mc3sc64qpin8bswz1fnv5zqg8dr4j8afq10"; depends=[]; }; gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; }; glm_ddR = derive2 { name="glm.ddR"; version="0.1.1"; sha256="123xqyw73l5lv746zvy2wjwr8xx6gpmwi5n86m8d05dj3bx02dzm"; depends=[ddR Matrix]; }; @@ -5687,11 +5835,12 @@ in with self; { globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globalboosttest = derive2 { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; }; - globals = derive2 { name="globals"; version="0.8.0"; sha256="0882vpjsl9f5jld3bldgl6y1kdncl9gk3m6amigmpgcd9a6v7pm2"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.10.0"; sha256="1vxp4lliihjd9p5d5yaf4dqvj0hmr8nzpxayscdckcxq6jr2p34i"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.1-2"; sha256="11y3dbi3x3idlwhzr5s2g976myci91l1qlsfyny732gb7q32c79w"; depends=[]; }; glogis = derive2 { name="glogis"; version="1.0-0"; sha256="19h0d3x5lcjipkdvx4ppq5lyj2xzizayidx0gjg9ggb1qljpyw9m"; depends=[sandwich zoo]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; + glue = derive2 { name="glue"; version="1.0.0"; sha256="03xvs0xana2hwk5di3pydllw0jdvdmjgxv26rx2fm97glcgnk8hk"; depends=[]; }; glycanr = derive2 { name="glycanr"; version="0.3.0"; sha256="1s3xhg31xc3x4gzxjpn9mbb7dw4m49na2mdlgr5wh1z9gxdc06pa"; depends=[coin dplyr ggplot2 tidyr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; }; @@ -5701,14 +5850,13 @@ in with self; { gmm = derive2 { name="gmm"; version="1.5-2"; sha256="1phd8mmfyhjb72a45gavckb3g8qi927hdq0i8c7iw1d28f04lc70"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-1"; sha256="0pdbky9gm8s3dvyg6z7pvn7wzqlbvdg7y0py9kcwfxxjvwcp1qwh"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.16.2"; sha256="0zf4krlvdywny5p5hnkr0r0hync6dvzc9yy4dfywaxmkpna8h0db"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.5-13"; sha256="0gng529l8nkazrlypsmc50gd0sn8zgkw7xc2ymrwkykiv1lcwdv2"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.5-13.1"; sha256="0xh9dli4i7hyjywsn2h780cxl3k7v0q421djyr1wshk7l9s5701g"; depends=[]; }; gmt = derive2 { name="gmt"; version="1.2-0"; sha256="09az2iwwhyrls4mr619vwzhzmaks6klm67lnir48bh40hynsvibp"; depends=[]; }; gmum_r = derive2 { name="gmum.r"; version="0.2.1"; sha256="127h76nm99ldpaznys5y4rnrvq0kh5pcsjmw21hz79a8rjni7r16"; depends=[BH ggplot2 httr igraph Matrix Rcpp RcppArmadillo SparseM]; }; - gmwm = derive2 { name="gmwm"; version="2.0.0"; sha256="1cjmd0758ggjkpf5mkfdhwl121yv84gm1cwg6b2c1r8pd3wcqx57"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 scales]; }; gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; }; gnm = derive2 { name="gnm"; version="1.0-8"; sha256="1581lzkb1v3y0arrq7x1bg7c91cii87bifxcdi1jzyc5rxj261la"; depends=[MASS Matrix nnet qvcalc relimp]; }; gnmf = derive2 { name="gnmf"; version="0.7.1"; sha256="1vbcsxg61mlsdir8szd0rdxfswr7kr6a07750ar2l9b4rkg3yfqz"; depends=[]; }; - gnumeric = derive2 { name="gnumeric"; version="0.7-6"; sha256="0d8igplypw40kshg9skij0cymc6j5hmbmqhbfpm0v2q3kw5r9d3p"; depends=[XML]; }; + gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; goalprog = derive2 { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; }; goeveg = derive2 { name="goeveg"; version="0.3.3"; sha256="1p66fc1vr09zxp1h81b8by2cldxn0q8vivcc5g3pggb65d9wj846"; depends=[fields mgcv vegan]; }; gof = derive2 { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; }; @@ -5716,12 +5864,11 @@ in with self; { gofMC = derive2 { name="gofMC"; version="1.1.2"; sha256="0hbqx0z2517qgmp6sjg76hv74yrkfbswb9rmfjmsmcyzj2x67w86"; depends=[ggplot2 scales]; }; gofastr = derive2 { name="gofastr"; version="0.2.1"; sha256="1a291bddhzk0wxrmk9dpiiv93h6si8s19v00wmypw0jfbrjhlc53"; depends=[data_table quanteda slam SnowballC tm]; }; goft = derive2 { name="goft"; version="1.3.1"; sha256="079p0l4w630j87h0xwk3wxpnd5779by507mffkwgj4qx4ljjfnqr"; depends=[fitdistrplus]; }; - goftest = derive2 { name="goftest"; version="1.0-4"; sha256="0rp8qlcv0az49gxplxycz4q9l66z8y69jg4kwzfn78l5z6qdvq5s"; depends=[]; }; + goftest = derive2 { name="goftest"; version="1.1-1"; sha256="183imn6dy28ama8bywxgyh32vgakv7bsbz4k5qbhnlhqdvzv2v6v"; depends=[]; }; gogamer = derive2 { name="gogamer"; version="0.4.3"; sha256="0p11pxwc4vnmf2hh0zxv99qlqkqiszqawh8scw4v861i8ihp84iz"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp scales stringr]; }; gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; - goldi = derive2 { name="goldi"; version="1.0.0"; sha256="1asn5r8klmpizmp8bfapfy5vraf7sxswm3fky6473hxajz4hyfvw"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; - googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.3.0"; sha256="1zjldi93g5871dw1vdxriw08rz5hrmpx530r76s6r0rlijs9lwal"; depends=[bigQueryR dplyr googleAuthR googleCloudStorageR jsonlite magrittr shiny tidyjson]; }; - googleAuthR = derive2 { name="googleAuthR"; version="0.5.0"; sha256="0fk0rijn3529v918chpygvlkigj31dpimdfnkmhsgcznfarkc598"; depends=[devtools formatR httr jsonlite miniUI R6 shiny testthat]; }; + googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="0.4.0"; sha256="01dl76ggzkcik4jq0q3fmy9jnbd6ly7npbrffph2ir7cqnpzvyl2"; depends=[bigQueryR dplyr googleAuthR httr jsonlite magrittr shiny testthat tidyjson]; }; + googleAuthR = derive2 { name="googleAuthR"; version="0.5.1"; sha256="1ba8a4yc6l3ycamcqqq7mwqi9bw4y1xb29svww9gzha3yngy3740"; depends=[devtools formatR httr jsonlite miniUI R6 shiny testthat]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.2.0"; sha256="02l3jml2sqw4m7fralr3dzyk06h8jinn6bi54gwc02f1y84j8qfh"; depends=[googleAuthR httr jsonlite readr testthat]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.1.0"; sha256="173y7m2j6iw848djjawkiy22fg56hnpx0m0q1halzwycqx6z08vc"; depends=[future googleAuthR jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.15.7.28"; sha256="1bkfj88rn8ai0kbjbd0s3zih6iz018xybr13w2h9i6wdi3dhs75s"; depends=[XLConnect XML]; }; @@ -5735,7 +5882,7 @@ in with self; { gpDDE = derive2 { name="gpDDE"; version="0.8.2"; sha256="100g2f8zlpbwxb46h62pgvidll8aflz1zl4inyh8dml6vhm9pilp"; depends=[CollocInfer deSolve fda forecast lars limSolve MASS nnls penalized trustOptim TSA]; }; gpairs = derive2 { name="gpairs"; version="1.2"; sha256="09mkdbs9hklxnmqcsnf65s3dfsfcr7kppp6zxj08v5hxym1gpz3l"; depends=[barcode colorspace lattice MASS vcd]; }; gpclib = derive2 { name="gpclib"; version="1.5-5"; sha256="08j81b8wymsgin20n54gvm6m54rmdic51p6qzs9cz4pmgl7dkkjv"; depends=[]; }; - gpg = derive2 { name="gpg"; version="0.4"; sha256="081b2s491hcy2azyqwlzr5xh5bbvinhnlqr21w6w02rxvib6p3jj"; depends=[curl]; }; + gpg = derive2 { name="gpg"; version="0.5"; sha256="1l13wwmhayyhgl2m3r5f5p3m3y3z3pcj38liywx6a24hpxmir7pp"; depends=[curl]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; gplots = derive2 { name="gplots"; version="3.0.1"; sha256="02nb8n3s7c1zxq2s7ycaq2ys72y7mzirxrwj954h6gdc4x1zhg9l"; depends=[caTools gdata gtools KernSmooth]; }; @@ -5746,18 +5893,20 @@ in with self; { gputools = derive2 { name="gputools"; version="1.1"; sha256="0np1lndvppdi409a1kfbbl0z5hr8wg2q473jch58zd16d2ickwkb"; depends=[]; }; gquad = derive2 { name="gquad"; version="2.1-0"; sha256="0s7crpirscbij2y25scwzb9fyp9ych1n80fij2ajda9zaqcyyin8"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-0"; sha256="1d8fd7502qj7cirjqdkr1qj51rylw2fz5hs06avfvc2dxs2xwfw1"; depends=[XML]; }; - gradDescent = derive2 { name="gradDescent"; version="2.0"; sha256="0qfm9vzi8j083na5ziwjypycbw6ncwk75xsaam2vc4xhfarw8fjs"; depends=[]; }; + gradDescent = derive2 { name="gradDescent"; version="2.0.1"; sha256="0kxyvr30hygg82s5m7nng02fvn6nak43y2v18445xbb05y6f5gmx"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; gramEvol = derive2 { name="gramEvol"; version="2.1-3"; sha256="0z2511zhs2gcdkwp29n6fpafhn49h69yi56nmrhh9zc8jqj1rwpa"; depends=[]; }; granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; }; granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; }; + grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; graphTweets = derive2 { name="graphTweets"; version="0.3.2"; sha256="13kab1nz85ghs5n882ss513di30b7lg72h676v37404ypj5a1vi1"; depends=[dplyr igraph reshape2]; }; - graphicalVAR = derive2 { name="graphicalVAR"; version="0.1.4"; sha256="09qrndfxxjfc8l2g6p4si6w9khz0gjmr7fisbvw395bf2vxvd47i"; depends=[dplyr glasso glmnet Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; + graphicalVAR = derive2 { name="graphicalVAR"; version="0.2"; sha256="0z1qjvyqlalplmwz898rhbjkj6fg1dsgpxn6828qmw3is36g74xg"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; }; graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; }; + graphkernels = derive2 { name="graphkernels"; version="1.2"; sha256="06lh4w0xw1apz70s9qzlhlayzh6nyd6v512lc90a0g7n6xw1fqvg"; depends=[igraph Rcpp RcppEigen]; }; graphql = derive2 { name="graphql"; version="1.2"; sha256="03rmxpd1g9r1hgv9r3mrwf5pp4013cpqvbg385ywfm8l1c3j0a3z"; depends=[jsonlite Rcpp]; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; }; graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; }; - grattan = derive2 { name="grattan"; version="1.3.0.3"; sha256="1k8ynf6wazjhsr0m3wy39s6833cd5j906awxkr2yhy5dfwy4jfhr"; depends=[assertthat data_table dplyr forecast lazyeval lubridate magrittr purrr Rcpp rsdmx zoo]; }; + grattan = derive2 { name="grattan"; version="1.4.1.2"; sha256="0b4sj4zz432m288jv9y6xx1isw84j23gjkdwpxxv6ny29j3xw361"; depends=[assertthat data_table dplyr forecast lazyeval lubridate magrittr purrr Rcpp rsdmx zoo]; }; gravity = derive2 { name="gravity"; version="0.3"; sha256="0makhi5hfs2x891ss6whq49rp73j6h5x5m4dvd0d175y06n4hg3s"; depends=[lmtest multiwayvcov sandwich]; }; greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; grex = derive2 { name="grex"; version="1.4"; sha256="0jj0473q06ym410glnma7sbqn9z0l0j0i5kw3mqynjs3blr03d7w"; depends=[]; }; @@ -5768,7 +5917,7 @@ in with self; { gridGraphics = derive2 { name="gridGraphics"; version="0.1-5"; sha256="1fsw699xk56iiwscrf98a1b0m2xpmvfqqsb7aja49fhv8qam6szf"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.5-0"; sha256="15d35066213hwsxsvmnqxqm4wim850645jwajw4pa190v8sapl89"; depends=[RJSONIO XML]; }; - gridsample = derive2 { name="gridsample"; version="0.1.3"; sha256="169jsvavn46iaczf9j9zh41ila3vv7i8bapsbdy39sifwadqqw4y"; depends=[data_table geosphere maptools raster rgdal rgeos sp spatstat]; }; + gridsample = derive2 { name="gridsample"; version="0.2.0"; sha256="0hpfhkma60h59z3akjqs7igs6zg00xs3jlq3sm48gxbjrk7fb5sm"; depends=[data_table deldir geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; }; groc = derive2 { name="groc"; version="1.0.5"; sha256="1kqcdyq1y80gd62jpn38yz6q1qmg84b7k8qcniip5h948vfzkddg"; depends=[MASS mgcv pls robust robustbase rrcov]; }; @@ -5777,6 +5926,7 @@ in with self; { groupRemMap = derive2 { name="groupRemMap"; version="0.1-0"; sha256="1bfp746j0dx7kk44nyjqmimvgw14par9ayvqxnzldc05qsazjdwx"; depends=[]; }; groupdata2 = derive2 { name="groupdata2"; version="0.1.0"; sha256="1kqmwjf06bnm0fbvcsicfrkgl7kn42v5bip1m9riiqmk4wh2bkqx"; depends=[dplyr plyr]; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; + groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; grove = derive2 { name="grove"; version="1.0"; sha256="1w8qz2k6m2xm0n699dj69aiagxy728q66bphxbmn71kakymvkgnz"; depends=[Rcpp RcppArmadillo wavethresh]; }; growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; }; growfunctions = derive2 { name="growfunctions"; version="0.13"; sha256="19ngsd326vws2f3wsrkcsyzn64fm9nnqvnbamfw6aal9xzzzz59m"; depends=[ggplot2 Matrix mvtnorm Rcpp RcppArmadillo reshape2 spam]; }; @@ -5807,9 +5957,11 @@ in with self; { gsrc = derive2 { name="gsrc"; version="1.1"; sha256="12rrp9v0r5qzxcs1l29238nkc1haql1c4vva3vdm26kglpg7qj18"; depends=[Ckmeans_1d_dp dbscan DNAcopy illuminaio limma openxlsx preprocessCore R6]; }; gss = derive2 { name="gss"; version="2.1-7"; sha256="1nrs1yhf2h06pkkhkvaal92h0mzrwixs0pay6dkb8q2d9igbn184"; depends=[]; }; gsscopu = derive2 { name="gsscopu"; version="0.9-3"; sha256="0bvhhs5wn4y1dcff2g87f80jdn3i4mdbvdbydsbx80ng38rfxhhg"; depends=[gss]; }; - gstat = derive2 { name="gstat"; version="1.1-4"; sha256="138v8accqwf95a3i980x57wd2j8vmdg1ga44rx9nbjcpyxc5x6mf"; depends=[FNN lattice sp spacetime zoo]; }; + gstat = derive2 { name="gstat"; version="1.1-5"; sha256="1wfzffl0wfimb93d5ln96yhv2g64aywzmh6hdaadl8qyqx6rx7q3"; depends=[FNN lattice sp spacetime zoo]; }; gsubfn = derive2 { name="gsubfn"; version="0.6-6"; sha256="196x4c3ihf4q3i0v7b1xa6jm8jjld2rsx00qz03n90wfnjdx5idv"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-3"; sha256="0ca3h567r23bdldic7labk1vbz8hhslw568lacbdcikm8q16hk72"; depends=[]; }; + gsynth = derive2 { name="gsynth"; version="1.0.3"; sha256="07cr4lnjpqzlbsv8w35iazag89n75wy1lj7db2nh5msd9qsb1a79"; depends=[abind doParallel foreach GGally ggplot2 Rcpp RcppArmadillo]; }; + gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.2.0"; sha256="0vz7073m0a2q12qzzihrfh5c2kx5jqi5l7z470fxmwqghdllh7l0"; depends=[]; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; @@ -5831,14 +5983,15 @@ in with self; { gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; }; - h2o = derive2 { name="h2o"; version="3.10.3.6"; sha256="1jpliv63dpqmq635gxjar19z70ciyw76yxvcg505rgryk2nf3m1h"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.10.4.4"; sha256="11bbpwsx9pyf54v1w9j7sjdh8kins0kraqjmssghisp7q0gcz4dk"; depends=[jsonlite RCurl]; }; h5 = derive2 { name="h5"; version="0.9.8"; sha256="1i7ymbqcmv8b9v8jdaqs49638m7xib5k92d62jh6h4il8l10rykx"; depends=[Rcpp]; }; hBayesDM = derive2 { name="hBayesDM"; version="0.3.0"; sha256="0ka7x55x04656cad9gyzfr2p0xf9gjyq56vw0ja9561vvbk2dynm"; depends=[BH ggplot2 loo mail modeest Rcpp RcppEigen rstan rstantools StanHeaders]; }; + hNMF = derive2 { name="hNMF"; version="0.2"; sha256="1lp4qcx48maa3iql8m862x32m7zxril0jizvf4d5pinjwki9d031"; depends=[NMF nnls oro_nifti R_matlab rasterImage spatialfil]; }; hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; }; haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; }; hamlet = derive2 { name="hamlet"; version="0.9.5"; sha256="1wnklaf46fpii10md3sp2cv7qqvrha2ihhrr1kxvpm7m8xzjfqc7"; depends=[]; }; - hansard = derive2 { name="hansard"; version="0.3.4"; sha256="01z2v0lqm35p74hm9x874xgaqdmqa7pig3l4ah5id148s2f5bafd"; depends=[httr jsonlite plyr]; }; + hansard = derive2 { name="hansard"; version="0.4.0"; sha256="11vs30lvs99l42qpqp6bc45frwnq6gmszkjqpcjlw26zxfd1kxps"; depends=[dplyr httr jsonlite]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.1"; sha256="0cs90zxxbvglz1af0lh37dw1gxa04k0kawzxamz2was3dbh19lbz"; depends=[haplo_stats survival]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.7.7"; sha256="1rag22sqy8r87w5a1dww5cxknacm6975bpp74vw9zr04ldx4c64k"; depends=[rms]; }; @@ -5851,7 +6004,7 @@ in with self; { hash = derive2 { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; }; hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; }; hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; - hashmap = derive2 { name="hashmap"; version="0.1.0"; sha256="1pp62py2n8ajv90fmv4zkga3hshk9cj1qfzagnp8jnfym0jp9rlc"; depends=[BH Rcpp]; }; + hashmap = derive2 { name="hashmap"; version="0.2.0"; sha256="0dy5q11s5ds69yqzax7nqjjq2kfljk7m7sjh6s114bchx3wc77zg"; depends=[BH Rcpp]; }; hashr = derive2 { name="hashr"; version="0.1.0"; sha256="1ri2zz2l1rrc1qmpqamzw21d9y06c7yb3wr60izw81l8z4mmyc3a"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.1.3"; sha256="1r9z6jc9lbdj2xc81gpnbswrl8rhs8zrlsnypfrny40g3j402iap"; depends=[graph Rgraphviz]; }; haven = derive2 { name="haven"; version="1.0.0"; sha256="15ynk1qm4g9m6ng4lc1x3hwjb2xak6b795ifh5q1k4mmx07xz6dl"; depends=[BH hms Rcpp readr tibble]; }; @@ -5866,11 +6019,12 @@ in with self; { hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hddplot = derive2 { name="hddplot"; version="0.57-2"; sha256="1mckgd99wvxbqvpyx231r97kysppnn1xggy8jvnc31sxq8m9gfr7"; depends=[MASS multtest]; }; + hddtools = derive2 { name="hddtools"; version="0.7"; sha256="0acvdysyyv5i109adh1prrc9ifwadb0gk303hh3b0g69wysnmhl8"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr tibble XML zoo]; }; hdeco = derive2 { name="hdeco"; version="0.4.1"; sha256="04nggwckvn1kwi238qd33l4pryzn4aq5bmi30bvfi99gwnrlgfgq"; depends=[]; }; hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; }; hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; }; hdm = derive2 { name="hdm"; version="0.2.0"; sha256="01zd3b44c0rnwxwxcmsgj7w0clq4h7wrlzy4yiwvxcifiv8mgp8l"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; - hdnom = derive2 { name="hdnom"; version="4.6"; sha256="0hp8sd4xcwcmrs1a7idnhkq7fawvajg35v5mzv2dfa69xdga740h"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; + hdnom = derive2 { name="hdnom"; version="4.8"; sha256="0z6rj8r7v1z2f8c5vgslnzl6f09ncbpzv0l2xyiy5c78j68z16l3"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; }; hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; }; hdr = derive2 { name="hdr"; version="0.1"; sha256="0dgp4442mfvri8vhicp02nrv55z13r6664x2nlcq6vh6xz9pqyl0"; depends=[httr]; }; hdrcde = derive2 { name="hdrcde"; version="3.1"; sha256="027nxpzk1g0yx8rns7npdz30afs5hwpdqjiamc7yjrsi0rzm71lw"; depends=[ash KernSmooth ks locfit mvtnorm]; }; @@ -5880,9 +6034,9 @@ in with self; { heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; }; heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; }; heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; }; - heatmaply = derive2 { name="heatmaply"; version="0.7.0"; sha256="1s4qcwmv6la6p3vcxp67nvlbbkd92zj1jagj8vwgk46pykqwr1h5"; depends=[colorspace dendextend GGally ggplot2 magrittr plotly reshape2 scales seriation viridis]; }; - heavy = derive2 { name="heavy"; version="0.38"; sha256="0swrn7vvs682k8yhvi49sfs1zpivhjlh7kfcjnk14i2jp1yk2slz"; depends=[]; }; - heemod = derive2 { name="heemod"; version="0.8.0"; sha256="0wzwqb2rj578zlr3nfwmcw3m3dx9rv5v8wlqyn4x2504d3i7g4yv"; depends=[dplyr ggplot2 lazyeval memoise mvnfast pryr rgho tibble tidyr]; }; + heatmaply = derive2 { name="heatmaply"; version="0.9.1"; sha256="1havw3m01nc1ass48j6afz85pvklkgpbl9pip4mqzi2fp6q327y5"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis]; }; + heavy = derive2 { name="heavy"; version="0.38.1"; sha256="12s4g0m5qi4yg26p9l3qay1gfhixma66ls0kf8lkaswzgd7761hp"; depends=[]; }; + heemod = derive2 { name="heemod"; version="0.9.0"; sha256="184cqzj5paarswc5qbxrhh7h9g0fwwqagk9zv2rj361x8w5h2qbr"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr rgho tibble tidyr]; }; hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; }; helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; }; helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; }; @@ -5894,6 +6048,7 @@ in with self; { hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; }; hett = derive2 { name="hett"; version="0.3-1"; sha256="1y0hr9g2pjwzc5azh095h33qidxhhmlvd1csamjnhwdphj5drzz0"; depends=[lattice MASS]; }; heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; }; + hexSticker = derive2 { name="hexSticker"; version="0.1.0"; sha256="0c0879ka30lhfiyrq91aam2r351abirwigvv287v0cc76z21ih09"; depends=[ggforce ggimage ggplot2 gridGraphics showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-3"; sha256="0cx5hl70sk1wk24na21vjyv50b2358z1plvvcw604qf1zij4icwn"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.27.1"; sha256="0xi6fbf1fvyn2gffr052n3viibqzpr3603sgi4xaminbzja4syjh"; depends=[lattice]; }; hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; @@ -5902,7 +6057,7 @@ in with self; { hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; hglm = derive2 { name="hglm"; version="2.1-1"; sha256="1vr1332db60fqbck0nplfw5dnxpb7sa3irh80k2hyx4aw74ckr2k"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; }; - hgm = derive2 { name="hgm"; version="1.16"; sha256="1jgci5fg5fk867qvjgdlqr20spymjqxrypyp58jkfkjjrx1jpjsa"; depends=[deSolve]; }; + hgm = derive2 { name="hgm"; version="1.17"; sha256="11hv4pfv3gqiargvwvrxqzfji75j291w1nilawf8yjc3isnc4wjp"; depends=[deSolve]; }; hht = derive2 { name="hht"; version="2.1.3"; sha256="022a8zz2m34q89h29jglfj21knlqd8dwi85qmsi78ly1vacnzap8"; depends=[EMD fields spatstat]; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; @@ -5920,7 +6075,7 @@ in with self; { highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; }; highcharter = derive2 { name="highcharter"; version="0.5.0"; sha256="1myypff80mxcgc3j0sflalhqz344c2zz2p90aarli1pbys9v8ynp"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlist stringr tibble tidyr xts zoo]; }; highfrequency = derive2 { name="highfrequency"; version="0.5"; sha256="1csyfvhll1pvqaw5g6iqm55raxlcflc2wf86g0m1gv3x5iw7qjsv"; depends=[BMS chron cubature FKF MASS mvtnorm numDeriv quantmod robustbase rugarch sandwich timeDate xts zoo]; }; - highlight = derive2 { name="highlight"; version="0.4.7"; sha256="1gpwj4phq45hhx4x6r8rf6wc6ak6y4fkbad9v23fl8wldb4a8dyg"; depends=[]; }; + highlight = derive2 { name="highlight"; version="0.4.7.1"; sha256="02d507v599jmjggavgw94drfbk0cffj2m4zgl0hgq28n5fc9k1dm"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.1.1"; sha256="0kjs01ml4v57956rk3ch8y8kxni36gymkf830skxh4fj4nsr8hs1"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.6"; sha256="0n9v44dxdy5fhkdmpbpa2p78whyd9z3rhhy42ipdz5m5vsr55qa3"; depends=[]; }; @@ -5929,7 +6084,7 @@ in with self; { hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; }; hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; }; hisemi = derive2 { name="hisemi"; version="1.0-319"; sha256="0pm7dsaaqrdhkvxsk2cjvk6qd2rqqmddmv012smnrivi7mpnvd4w"; depends=[fda Iso Matrix]; }; - hisse = derive2 { name="hisse"; version="1.8.1"; sha256="0vdl61ylnv4f77hrpv68xf2ssjczynpmyla4pgsxhyp1r65l6in8"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; }; + hisse = derive2 { name="hisse"; version="1.8.2"; sha256="1cni5byx0187ss92ijs8j2dnswqb6dn6pva93bny3dylszqlyy96"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; }; histmdl = derive2 { name="histmdl"; version="0.6-1"; sha256="0vgfy49hrjcm3f8l2hb0fbn1ydh94g4xq2s116yf2c9pd0pwsbi1"; depends=[]; }; histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; }; historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; }; @@ -5940,6 +6095,7 @@ in with self; { hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; hmeasure = derive2 { name="hmeasure"; version="1.0"; sha256="0wr0xq956glmhvy4yis3qq7cfqv9x82ci9fzx3wjvaykd16h0sx9"; depends=[]; }; + hmi = derive2 { name="hmi"; version="0.6.3"; sha256="1jvbn8azpcgmg5kc9xkn6h2jznwg462wc2s3zhq7m6pn8p8faxyc"; depends=[boot coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm pbivnorm Rcpp tmvtnorm tree]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="0.2-4"; sha256="096flx2b9s66dasqj05zrkxsmg3lj6j5w0pwrw3b1qkpp9dvlrkb"; depends=[]; }; hmmm = derive2 { name="hmmm"; version="1.0-3"; sha256="0yjx5i13jbv7vzxn84m6305124ri7jnym0bxbdj46s6l7lw025a9"; depends=[MASS mvtnorm quadprog]; }; hms = derive2 { name="hms"; version="0.3"; sha256="127znf522r5mn3k6frhdd7pqh063bs3l85gn9h7cx50hpjf2as4k"; depends=[]; }; @@ -5954,6 +6110,7 @@ in with self; { hopbyhop = derive2 { name="hopbyhop"; version="2.1"; sha256="0j4m1zz0ijf1kw2m12g7bww3418b8pyjvvrzkm8xcryjil2xfmim"; depends=[]; }; horizon = derive2 { name="horizon"; version="1.0"; sha256="1wrp5qr1qql21xwcjh415q67z2ym4790zfp0n81360v6bp2b3hyy"; depends=[raster]; }; hornpa = derive2 { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; + horserule = derive2 { name="horserule"; version="0.1.0"; sha256="1kswmzdb58fkwhm9l3v8qhkw0wkprhprkxhxzsc7c3znvcim6jni"; depends=[BayesLogit gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer]; }; horseshoe = derive2 { name="horseshoe"; version="0.1.0"; sha256="19khsr7gfcygqasjswvm0v0ddna1i1grfbhars8jlvybfawswhgx"; depends=[]; }; hot_deck = derive2 { name="hot.deck"; version="1.1"; sha256="13pfgcyqaf5ik3pi8vgm06xmqli4hgslzlmhy1zi951anzdr49bd"; depends=[mice]; }; hotspot = derive2 { name="hotspot"; version="1.0"; sha256="0a4w5d6rg324hd06lfwr1hxf6bwr10n55s3ynz5bpkh9c61yik3n"; depends=[]; }; @@ -5978,12 +6135,12 @@ in with self; { htmltools = derive2 { name="htmltools"; version="0.3.5"; sha256="0j9bf80grd6gwh7116m575pycv87c0wcwkxsz3gzzfs4aw3pxyr9"; depends=[digest Rcpp]; }; htmlwidgets = derive2 { name="htmlwidgets"; version="0.8"; sha256="1df3pwl34rvdbr9sgr5h27q9bmqpckvpwq4frl3d1v614y3vfclj"; depends=[htmltools jsonlite yaml]; }; hts = derive2 { name="hts"; version="5.0"; sha256="130kyc4ygym53gsr8r8n35wrhx2yb3slf1yjs9cdyrqzxwsggfp4"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; }; - httk = derive2 { name="httk"; version="1.4"; sha256="1abjb1vg8q4va8g2bfsv537fwrsga83amc9rfsxbdbhzhf2qn0qr"; depends=[deSolve msm]; }; + httk = derive2 { name="httk"; version="1.5"; sha256="1ndpjs4i3xiv3c3nmik8q463l01rp4ccn1yscc8g77i2fwnvpyy6"; depends=[classInt data_table deSolve EnvStats ks MASS msm mvtnorm RColorBrewer reshape2 survey TeachingDemos truncnorm]; }; httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.0.0"; sha256="0p0c2n1n5nrmnii9myp9blzwg996xgm15law9f073an4xvfg2kd2"; depends=[digest httr jsonlite]; }; httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; }; httping = derive2 { name="httping"; version="0.1.0"; sha256="1bhy5mh0hz83rjmvh7wl211nqkz58gxsgkwlkmjrdfzc2cparxjz"; depends=[httpcode httr jsonlite magrittr pryr]; }; - httptest = derive2 { name="httptest"; version="1.1.0"; sha256="0fdsksxdq9y44460zpip0c3fhmlzvjbj9fp11g27k4lh85p042fa"; depends=[digest httr jsonlite testthat]; }; + httptest = derive2 { name="httptest"; version="1.3.0"; sha256="0fvf1d44ijdi8rlhpy7d9wzfsakfjfgxwr3j82jxds0jzqdgbfkj"; depends=[digest httr jsonlite testthat]; }; httpuv = derive2 { name="httpuv"; version="1.3.3"; sha256="0aibs0hf38n8f6xxx4g2i2lzd6l5h92m5pscx2z834sdvhnladxv"; depends=[Rcpp]; }; httr = derive2 { name="httr"; version="1.2.1"; sha256="03kkjlhyvvi5znwaxfm6cmdsg3q7ivwsvkzgabhjdj2jxs80pfg7"; depends=[curl jsonlite mime openssl R6]; }; huge = derive2 { name="huge"; version="1.2.7"; sha256="134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"; depends=[igraph lattice MASS Matrix]; }; @@ -5993,6 +6150,7 @@ in with self; { humidity = derive2 { name="humidity"; version="0.1.1"; sha256="0ifxjz7216ld5c4kc9vs83fcijbg5i2z0mwfzszch9j1s734yc8y"; depends=[]; }; hunspell = derive2 { name="hunspell"; version="2.3"; sha256="1sgjsa9gfq12bf2ld3yqwa18cy8njhvjd1jihbrbzki8z4xl7pjj"; depends=[digest Rcpp]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; }; + huxtable = derive2 { name="huxtable"; version="0.1.1"; sha256="09x7xvnkkd9m3ycf5ia926fn4vsj6yqbzaqa3p6lzz789f1j26s7"; depends=[htmltools knitr lazyeval rmarkdown xtable]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; }; @@ -6003,13 +6161,13 @@ in with self; { hydroGOF = derive2 { name="hydroGOF"; version="0.3-8"; sha256="1ljk2dk5ydsg7qdizyzkbw0b2zdhnb3x9h965d94ygzg8nw5kbak"; depends=[hydroTSM xts zoo]; }; hydroPSO = derive2 { name="hydroPSO"; version="0.3-4"; sha256="12md94g78m7m1np36sadx0wxpb149pn5gd8yj2kw7fphb8g6a218"; depends=[Hmisc lattice lhs sp zoo]; }; hydroTSM = derive2 { name="hydroTSM"; version="0.4-2-1"; sha256="0z5xw25w2fn67x2dw61msfdnp2dr2s2yi525fcjxn77339x9ksfr"; depends=[automap e1071 gstat sp xts zoo]; }; - hydrogeo = derive2 { name="hydrogeo"; version="0.5-1"; sha256="05766n82r6cvk4gnpnfrq28248awzm3y06dnybaymydjh6n1dn73"; depends=[]; }; + hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; }; hydrostats = derive2 { name="hydrostats"; version="0.2.5"; sha256="1n0wy8i1cfsgmqh898qi0qnqn4qx1srjvd05vmsf9qmhpnnyqw5m"; depends=[]; }; - hyfo = derive2 { name="hyfo"; version="1.3.6"; sha256="0d8dhp15h3ajvivb6fq8q83l7nz25a2lc7zx9cwlq6vrkj8ww3ya"; depends=[ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; + hyfo = derive2 { name="hyfo"; version="1.3.9"; sha256="03f3irmhndwfnv4i121gwxb2yv1868pggzyr80pgp4969qzddacm"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; }; hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; }; hyperSMURF = derive2 { name="hyperSMURF"; version="1.1.2"; sha256="1jlcfwyqs2mfdixqik5dqb0sl3i9pjxcrwabbcr24z8wnq524zx8"; depends=[doParallel foreach iterators randomForest unbalanced]; }; hyperSpec = derive2 { name="hyperSpec"; version="0.98-20161118"; sha256="0343prdah83l45z6p2wafmipw2x3f0yshm5hm11wgkkm1cnv5905"; depends=[ggplot2 lattice latticeExtra svUnit]; }; - hyperdirichlet = derive2 { name="hyperdirichlet"; version="1.4-9"; sha256="03c2xgfhfbpn1za84ajhvm0i5cpmfnz1makidrr2222addgyp9zx"; depends=[abind aylmer cubature mvtnorm]; }; + hyperdirichlet = derive2 { name="hyperdirichlet"; version="1.5-0"; sha256="01q5ri9p9nn7m1kgzyhn2d1rbwhjfz259cz2imhi9g1zpdry4kf2"; depends=[abind aylmer cubature mvtnorm]; }; hypergea = derive2 { name="hypergea"; version="1.3.3"; sha256="0spchrbb5y3yx63acs9ns256h7k3nd5wxg8vw258kqlvyapj50l6"; depends=[]; }; hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; }; hypervolume = derive2 { name="hypervolume"; version="1.4.1"; sha256="0gx9ing4h1sg4zzppfa386hllryf8vk1n013yv14c0k3sjjnz456"; depends=[fastcluster geometry ks MASS Rcpp RcppArmadillo rgl]; }; @@ -6032,11 +6190,15 @@ in with self; { iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iJRF = derive2 { name="iJRF"; version="1.1-4"; sha256="1fgbc0z647vwybffzp4iips86pxakd25dlk5jqgm049s6pa8m73v"; depends=[ggplot2]; }; iLaplace = derive2 { name="iLaplace"; version="1.1.0"; sha256="1z752yw3nvqj1ckf23262phkw849cb5p4m14v108xf2dizyzggxg"; depends=[doParallel fastGHQuad foreach iterators Rcpp RcppArmadillo]; }; + iMediate = derive2 { name="iMediate"; version="0.2"; sha256="06s4qbynk551y8csa2ixscrs8srlmbi2dmb7dccl9cbnywisxi05"; depends=[mediation]; }; + iMessager = derive2 { name="iMessager"; version="1.0"; sha256="1w0l2qpcgglg13bnqdnz8xnfq2mxkk5g6cblvf2v5y03c2gpmm86"; depends=[]; }; iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; }; + iNextPD = derive2 { name="iNextPD"; version="0.3.2"; sha256="06wka2qr1jm3hvi8j0b19fr21v72gmqknz8dg0l5wl91m0prqns3"; depends=[ade4 ggplot2 iNEXT Rcpp]; }; iRafNet = derive2 { name="iRafNet"; version="1.1-1"; sha256="0w9bry49apkrrrabglnv5w9l47jakmc30jh8q22a8gazwss293fb"; depends=[ROCR]; }; iRefR = derive2 { name="iRefR"; version="1.13"; sha256="17kjfga62xc4s1kii5clxszbag2dr1dyxfm7jasr20prx28ya6pp"; depends=[graph igraph RBGL]; }; iRegression = derive2 { name="iRegression"; version="1.2.1"; sha256="1kwsrmsflmqan96aj0dczlszfww1dlg6rwycyid52f7ghg9810rn"; depends=[mgcv]; }; iRepro = derive2 { name="iRepro"; version="1.0"; sha256="1knncn47pl411r31z1r5ipsiyagcpjbc2gb972n7l3539pcpf0zy"; depends=[]; }; + iSDM = derive2 { name="iSDM"; version="1.0"; sha256="1hzs187mwv3k2wx6dpvkizjhkcx63mznd06wiw6047lf5jrlif0a"; depends=[ade4 colorRamps geometry geosphere maptools MASS pdist raster rgdal rgl sp virtualspecies]; }; iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; }; iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; }; ibd = derive2 { name="ibd"; version="1.2"; sha256="0681v7lgx697yj2d60cw3p5axbbaxanzj291vdf7ailn7300p1ms"; depends=[car lpSolve lsmeans MASS multcompView]; }; @@ -6052,19 +6214,20 @@ in with self; { icRSF = derive2 { name="icRSF"; version="1.0"; sha256="155lgak9jqsy398q5y4fl050gas5hppb25jhc1njglq2h98w3pl2"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-1"; sha256="1bkl4a72l0k6gm82l3jxnib898z20cw17zg81jj39l9dn65rlmcq"; depends=[]; }; icaOcularCorrection = derive2 { name="icaOcularCorrection"; version="3.0.0"; sha256="1vmvarc2apipd0vlhprc5wpgh8i38m5myj1gqdymjrnky0azq17f"; depends=[fastICA mgcv]; }; - icamix = derive2 { name="icamix"; version="1.0.5"; sha256="1r6rrjha8c1cy7qf682yzkw7i1qxzrcvs8g20vb77mzhzjq6d073"; depends=[Rcpp RcppArmadillo]; }; + icamix = derive2 { name="icamix"; version="1.0.6"; sha256="0jys9r7wjxlwsq5rssih2lvsar1192w8vigdhhrcmf3d5z5ic1kp"; depends=[Rcpp RcppArmadillo]; }; icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; }; - icarus = derive2 { name="icarus"; version="0.2.2"; sha256="1bs04j0xdf6b0mvczi8v3jyjdf2g99vfqr9by83a7gl9vpsar4kn"; depends=[]; }; + icarus = derive2 { name="icarus"; version="0.3.0"; sha256="1656bz0av59dpgndibn0bc5zr9zka9pmw7qmhjz2b956bh7sh4ag"; depends=[]; }; iccbeta = derive2 { name="iccbeta"; version="1.0"; sha256="0zsf2b5nrv39pssi5walf82892fr8p1f802c96hjjknh78q7gh0h"; depends=[lme4 Rcpp RcppArmadillo]; }; icd = derive2 { name="icd"; version="2.1"; sha256="1634mpv1cgka8n1ws4lsqw8114q50rjrxcjlw16bq8igi1l4hrwq"; depends=[checkmate magrittr Rcpp testthat]; }; icd9 = derive2 { name="icd9"; version="1.3.1"; sha256="0yrgg1vf9jf0kv4qbvc0d8n26csxx79g2196ijgq43rhprrrm1y6"; depends=[checkmate fastmatch Rcpp]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; - icenReg = derive2 { name="icenReg"; version="1.3.6"; sha256="024iwpwbn3g2lsq9kn6p86m1qdj1ndlfakk6hsijc8akg0cmmzcg"; depends=[foreach MLEcens RcppEigen survival]; }; + icenReg = derive2 { name="icenReg"; version="2.0.1"; sha256="16a9v461gsyhx8hf938c17zx81383kmxkbmyb97q6z6gnkdy2ck0"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; }; icesAdvice = derive2 { name="icesAdvice"; version="1.3-0"; sha256="1csyw7sav56vkgwjllixjbgpy3ka9xivhr9pgb26iihgwwpnhdds"; depends=[]; }; icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; }; - icesSAG = derive2 { name="icesSAG"; version="1.2-0"; sha256="05fj1sx9fbpyhmng7llmayc2m0gvfyak6ispjkwrx55hms17i5p9"; depends=[png]; }; + icesSAG = derive2 { name="icesSAG"; version="1.2-1"; sha256="0qjqzqcd8hxv22jf7cw2w9vk6lazkcrnc84fz3vacbjmg3c93h1b"; depends=[png]; }; icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; }; + icosa = derive2 { name="icosa"; version="0.9.81"; sha256="05gpiksncdi536f4py7szfi6myny1gqj8i0hsgpma7cfcm3npn0l"; depends=[igraph raster Rcpp rgdal rgl sp]; }; icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; }; icsw = derive2 { name="icsw"; version="0.9"; sha256="0lmq9l9sy0fz3yjj2sj8f19iy26913caibf7d9zb9w9n6cqskvlx"; depends=[]; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; @@ -6072,17 +6235,16 @@ in with self; { idem = derive2 { name="idem"; version="1.0"; sha256="1knb5m0rczga7j3a58z7fjjn3nva7pihg2w3vh82dqpi8wwcnznj"; depends=[coda sqldf survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; - idm = derive2 { name="idm"; version="1.7.1"; sha256="1pn8iyfwcpp3zj51jjf0dvfc0rbh8f5smnbswxf186fqs9fkjpmy"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; + idm = derive2 { name="idm"; version="1.8.1"; sha256="14cy1gv12wjpsv5jih7pgq5d36gfpdc56ih4mc6hx638qkkyk87z"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; }; ids = derive2 { name="ids"; version="1.0.0"; sha256="1wwp1phbgj1zcdgyq4fzca8hmgibcc01xmqlnm51nmm0n3ajki2v"; depends=[openssl uuid]; }; ie2misc = derive2 { name="ie2misc"; version="0.8.5"; sha256="1i59836a3kjsra5ibk66ic35yqk28p3biylall8gngjssiig92c1"; depends=[data_table gWidgets2 gWidgets2tcltk lubridate openxlsx qdap reader readxl stringi]; }; - ie2miscdata = derive2 { name="ie2miscdata"; version="1.0.1"; sha256="1jqh5x5wnfv4cx3ck9k4kxchai7vfb3i968n5nq0yqgbvfii5kli"; depends=[]; }; ieeeround = derive2 { name="ieeeround"; version="0.2-0"; sha256="0xaxrlalyn8w0w4fva8fd86306nvw3iyz44r0hvay3gsrmgn3fjh"; depends=[]; }; iemisc = derive2 { name="iemisc"; version="0.9.6"; sha256="0yr2pqklj3qjlmkk2sc5rgi8dfnm9jdaagzh2dhm05lharhfzy6d"; depends=[data_table fpCompare gsubfn iemiscdata pracma r_import zoo]; }; iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; - ifaTools = derive2 { name="ifaTools"; version="0.13"; sha256="1mffvlzm4flz7n26vllm28s1iib66gbqq7nl4yfwbdljrpp4ph23"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; + ifaTools = derive2 { name="ifaTools"; version="0.14"; sha256="1m10j0isbaa30rd3dnvig9v9mwizmns36q8haaw07y8zw6mngzra"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.2"; sha256="18g0l0vh9z4nvl6jil32983c4z1dvawrivi4kz4g562q3habm279"; depends=[]; }; ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; ifultools = derive2 { name="ifultools"; version="2.0-4"; sha256="0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"; depends=[MASS splus2R]; }; @@ -6094,14 +6256,15 @@ in with self; { ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; }; iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; }; - imPois = derive2 { name="imPois"; version="0.0.7.5"; sha256="15l2air707xnzxvgvzsv90m5pl8vvr9inywvmx7f7irn4syy0g3a"; depends=[geometry rgl]; }; + imPois = derive2 { name="imPois"; version="0.1.4"; sha256="07350zly4fyx2sf9cqpfpyy8l5kn96z49kzym81p2bmhq66d408h"; depends=[geometry rgl]; }; imageData = derive2 { name="imageData"; version="0.1-26"; sha256="0r39bp33kki2ddvds2jkpk1r6afl8d1xbl447lnz25dxpzfcajn2"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; }; - imager = derive2 { name="imager"; version="0.31"; sha256="1lknn7lk6g6mda2sqabxkdkv4aryfq1k4f0bmz6ym14y5j7kjlzz"; depends=[jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; - imagine = derive2 { name="imagine"; version="1.1.0"; sha256="0xmmm38vwya0dlycky3dllr9j015fbc98bwwcp8k7xmknvvnzz83"; depends=[Rcpp]; }; - imfr = derive2 { name="imfr"; version="0.1.3"; sha256="0i25fl8ixq1z2hv3gf1rh5ssnxxzxaxg30wi5ixngwnnwkljxbph"; depends=[dplyr httr jsonlite]; }; + imager = derive2 { name="imager"; version="0.40.1"; sha256="05k44k05grn3vhh46inlqcy1800implvxp10rjhcliy4xlmcyrx2"; depends=[Cairo downloader jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; }; + imagine = derive2 { name="imagine"; version="1.1.1"; sha256="1pry74amgib4i5m0gly58ay61snmyw8h2v12clbhxmr7gn5z9v04"; depends=[Rcpp]; }; + imfr = derive2 { name="imfr"; version="0.1.4"; sha256="0q6iy6arq2c0gqcpnpr2safig3ki32m2gai1lmz19pwcfi9qkgf2"; depends=[dplyr httr jsonlite]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; immer = derive2 { name="immer"; version="0.7-0"; sha256="0pf0chrx1qbri0pkiz30pc2qcdmld0ajm7fljadzlnczs3bnr1na"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt]; }; - imp4p = derive2 { name="imp4p"; version="0.2"; sha256="1bymmfcchhmwdl0gq7x9llhykqzjw74c80x15mxs8dl9ha6fndc5"; depends=[imputeLCMD Iso truncnorm]; }; + imp4p = derive2 { name="imp4p"; version="0.3"; sha256="189bqj886bi4mgyj013cbqciafrzvz036m3cwkszv6j23d0mrb2r"; depends=[imputeLCMD Iso Rcpp truncnorm]; }; + implyr = derive2 { name="implyr"; version="0.1.0"; sha256="0g0zl5sp30xs9isvn8aspjicmx7wnai2b3780fjarlb5a4ng5fk0"; depends=[assertthat DBI dplyr]; }; r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; }; imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; @@ -6109,7 +6272,8 @@ in with self; { imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; - imputeTS = derive2 { name="imputeTS"; version="1.8"; sha256="1r86fpv51jl1d5lskbx19c0njr5qdn0l8m3xj5brisvf035b7pp4"; depends=[forecast stinepack]; }; + imputeR = derive2 { name="imputeR"; version="2.0"; sha256="0xyvy785jb1mv06jq25cnsbgiywi3857sdiizcjck7bx970lk02n"; depends=[caret Cubist gbm glmnet mboost pls rda reshape2 ridge rpart]; }; + imputeTS = derive2 { name="imputeTS"; version="2.1"; sha256="1sw8b3jss4h5ns4dgp0r902v1vk9iavvc84rpkhgqkjxffr1c672"; depends=[forecast Rcpp stinepack]; }; imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.0"; sha256="082ps3r4priv3r5w8gydvkjxp8r3nsrss964hdsff2kc5dsmqn14"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; @@ -6118,8 +6282,8 @@ in with self; { inbreedR = derive2 { name="inbreedR"; version="0.3.2"; sha256="09fr13ckyn2skiigkn4qdx5g080gcmyyrvzhcp0wrml9wpmy0h4z"; depends=[data_table]; }; inca = derive2 { name="inca"; version="0.0.2"; sha256="1wj8f1ga0km9k9zrjcd7g228kw2pp6y6pgnfwmgdd05bx4hzjhdw"; depends=[Matrix Rcpp RcppArmadillo]; }; incadata = derive2 { name="incadata"; version="0.5.3"; sha256="1mzwd9nida5spsqr5jayp3wn1h3cbv0amc5iyxx6h51gn0pwspkz"; depends=[backports decoder dplyr rccmisc sweidnumbr]; }; - incidence = derive2 { name="incidence"; version="1.1.1"; sha256="03dlgqz6mnayc5lvaalxdhdidzgq49djkd8129ymjmmcg6qwd2h4"; depends=[ggplot2 ISOweek]; }; - inctools = derive2 { name="inctools"; version="1.0.7"; sha256="0hw42i0zj8f156wkdc7v7njg6sgxkhhn84v2pg1qxwvlyy3daz0y"; depends=[cubature doParallel foreach ggplot2 glm2 MASS plyr pracma]; }; + incidence = derive2 { name="incidence"; version="1.1.2"; sha256="1xyln5zndqwg57snkpj676p8wj2mbzwb3fnc9hniq529mnr95qw3"; depends=[ggplot2 ISOweek]; }; + inctools = derive2 { name="inctools"; version="1.0.10"; sha256="0ykkxlifh9gxflbk9786xbx2i5ja3pn01z9dj8dqwvrrq83npcfw"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr MASS plyr pracma]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.7"; sha256="1pm1yl7kbxrik5ghvsvp6irmzgawxb8v03kvrqm48mnbghkdh1lv"; depends=[ape numDeriv phangorn Rcpp]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; }; inegiR = derive2 { name="inegiR"; version="1.2.0"; sha256="14mpjyc85l9sznhn29cxk37l3y5yxclqiv2kgcwf8prpxfgwy83l"; depends=[jsonlite plyr XML zoo]; }; @@ -6129,20 +6293,20 @@ in with self; { inferr = derive2 { name="inferr"; version="0.1.0"; sha256="13wgjh5b03kyx6jvdgpavr9qjzvr7plgml2ickq2gxkxczc05r2m"; depends=[dplyr magrittr purrr Rcpp tibble tidyr]; }; inflection = derive2 { name="inflection"; version="1.2"; sha256="13mlyfcw13z9y48ypycypp6m7s2d7yx3n13vr2br4kwwn74hqky8"; depends=[]; }; influence_ME = derive2 { name="influence.ME"; version="0.9-8"; sha256="0fnc0hk50sh4fd5jfgs1kd61psk7mrc85s1ihmficayivvl7iklb"; depends=[lattice lme4 Matrix]; }; - influence_SEM = derive2 { name="influence.SEM"; version="2.0"; sha256="113h4nrcik21vhfld143ivcij49vimzilq7nxn2d0821iz1dmnfg"; depends=[lavaan]; }; + influence_SEM = derive2 { name="influence.SEM"; version="2.1"; sha256="1qhv640lngwrbdfqvw2x0x4zwv0aqzxwyfdpnivzjf5pw58nya5s"; depends=[lavaan]; }; influenceR = derive2 { name="influenceR"; version="0.1.0"; sha256="12p9362hkndlnz1rd8j2rykg57kbm6l7ks60by3rd25xg50k5jag"; depends=[igraph Matrix]; }; - infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.5.1"; sha256="1aigd1fvpdqjplq1s1js0sy8px68q73lbp5q591rn52c77smdhaj"; depends=[MASS]; }; + infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.0"; sha256="1gmsf4gw6xf70sh7y5hagkavknp80293sb7wgx6lycngq2acmi4w"; depends=[MASS]; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; infotheo = derive2 { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.5"; sha256="1bgjfhwkbd0y1iwxq3qh80kshsd9g1r1gg99lr75n2i61qnnimnf"; depends=[fields]; }; - infuser = derive2 { name="infuser"; version="0.2.5"; sha256="0zq05i55gkwrvjs3mzh64ffwmxln3lrjqw3w87xy3ihsqjhxb2pg"; depends=[]; }; + infuser = derive2 { name="infuser"; version="0.2.6"; sha256="1b18476k17kkj2aq5icw8rlrla8ax1h6nx08jjn9pcx02p3lm1ni"; depends=[]; }; infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; ini = derive2 { name="ini"; version="0.2"; sha256="0dzy2zzzczs7xnnm7v6achd6qsy2wbrvsgahkgbsrpvwxpcb79bp"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; inline = derive2 { name="inline"; version="0.3.14"; sha256="0cf9vya9h4znwgp6s1nayqqmh6mwyw7jl0isk1nx4j2ijszxcd7x"; depends=[]; }; inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; }; - inlmisc = derive2 { name="inlmisc"; version="0.2.4"; sha256="1j2wxzm45zzykm29swvqj6hdscgxq6094s4wwj6rr7nwpp9v3qni"; depends=[dplyr igraph knitr raster rgdal rgeos sp]; }; + inlmisc = derive2 { name="inlmisc"; version="0.2.6"; sha256="1bgf31k3xmqmw8wsmz8z4b7d7jzivr9yxy7w9cy4vdiz05i3v96p"; depends=[dplyr igraph knitr raster rgdal rgeos sp]; }; inpdfr = derive2 { name="inpdfr"; version="0.1.5"; sha256="161p45hj5h6yxn9w140gkcsj2y90lqc8avsj2dsg3gnzyks07as1"; depends=[ca cluster entropart metacom R_devices RColorBrewer RGtk2 SnowballC stringi tm wordcloud]; }; insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; }; insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; }; @@ -6155,10 +6319,10 @@ in with self; { intamap = derive2 { name="intamap"; version="1.4-1"; sha256="1shyxlps1rxqavrvg55gw0c9115q0j3yw78ilavig7036zx5lazv"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; }; intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-10"; sha256="073k6sdds40fmlbw1xnp3x5sc9qdyq2s1bhp7av4jjm930hsvsrn"; depends=[automap gstat intamap spatstat spcosa]; }; interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; }; - interactionTest = derive2 { name="interactionTest"; version="1.0"; sha256="1ppc476glwf0bsr1wgzircvnhgn9kkbhy3rskfz671ma6fv3p67b"; depends=[]; }; + interactionTest = derive2 { name="interactionTest"; version="1.0.1"; sha256="021qsg9rglc4vj3hkrvfm2snd77zna7ql2i0m5hf77yzxxc35jc6"; depends=[]; }; intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; }; interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; - interflex = derive2 { name="interflex"; version="1.0.2"; sha256="0ybfk9jxfc98jd97pg469wrddllhm43hgg4lwg1i1gmz34y84yf2"; depends=[doParallel foreach ggplot2 Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; + interflex = derive2 { name="interflex"; version="1.0.3"; sha256="07a41rx553i6rlgcl4aa2xxkdql3y7bi84h2pgak9qbyxgw6mlmq"; depends=[doParallel foreach ggplot2 Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; }; intergraph = derive2 { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; }; internetarchive = derive2 { name="internetarchive"; version="0.1.6"; sha256="1cx9dxlrdz1xak4jrrjs2wsq6ml8n2xl0n0s6n9h3g247j4lfvnm"; depends=[dplyr httr]; }; interplot = derive2 { name="interplot"; version="0.1.5"; sha256="0svhs7mj987vravirhmp4788qvqm32v614qj7q06b2y4va477yj8"; depends=[abind arm dplyr ggplot2]; }; @@ -6188,7 +6352,7 @@ in with self; { ipdw = derive2 { name="ipdw"; version="0.2-5"; sha256="1a0xlhzmnc3l3fvn1v3rgxwg0va0418yq62i2dlq0l5djcfbxyc3"; depends=[gdistance raster sp]; }; ipflasso = derive2 { name="ipflasso"; version="0.1"; sha256="12cyn7wpkrjqrjccb26mi375ijqplps4216ldj7w3az9g8pzihv3"; depends=[glmnet survival]; }; ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; - ipft = derive2 { name="ipft"; version="0.2.8"; sha256="0jyg69bj32j1xgnwrl233s6bi85drhry94midsrjqn3g2ik6xafz"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; + ipft = derive2 { name="ipft"; version="0.5"; sha256="1xjpvbcp040zsqgmbj67www9zl5ibh554qzpcp02h1q9yzs59ill"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; iplots = derive2 { name="iplots"; version="1.1-7"; sha256="052n8jdhj8gy72xlr23dwd5gqycqnph7s1djg1cdx2f05iy693y6"; depends=[png rJava]; }; ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.6.4"; sha256="1cpp0cp6cfdrh23wjjqvng9dszjmp5a90bgd6sbgcfckn2si0ly1"; depends=[RColorBrewer Rcpp RcppEigen]; }; @@ -6197,7 +6361,7 @@ in with self; { ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; iqLearn = derive2 { name="iqLearn"; version="1.4"; sha256="0vgnfr6x6f6qlnag63brnkdymlmm2vbkl8fg02w98qsc48lal454"; depends=[]; }; iqspr = derive2 { name="iqspr"; version="1.0"; sha256="18kld8w1qwgyvs61irk80n56lj6mcy0mlrnvsq3940hhbcpmx61k"; depends=[rcdk]; }; - irace = derive2 { name="irace"; version="2.1"; sha256="0q3k8jd2s7m20vdx8bfjh3kwgqjyymkfwdfgmbflmlj8q1km8iqc"; depends=[]; }; + irace = derive2 { name="irace"; version="2.2"; sha256="10bxi508qvm97kljpwlnwypvlrzjdzliv0qq92wxjxyyi8pqgfvc"; depends=[]; }; irlba = derive2 { name="irlba"; version="2.1.2"; sha256="1qbcn0ix85pmk296jhpi419kvh06vxm5cq24yk013ps3g7fyi0si"; depends=[Matrix]; }; irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.2"; sha256="1kbab06lwldyp5ra71rgn4habq6yl6ggl5km1sj9bbqa6n4gqvwz"; depends=[fGarch shiny shinydashboard]; }; @@ -6217,7 +6381,8 @@ in with self; { isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; - itcSegment = derive2 { name="itcSegment"; version="0.2"; sha256="121k0j5w47c10ws0dwcl1qd3ryichx5m86mzf2w3249p6wj54y7j"; depends=[maptools raster rgeos sp]; }; + itan = derive2 { name="itan"; version="1.0"; sha256="082vh5gvh8hgyhk8nswll16ldhnp0pfpxnz1yx05zsc4nzvm92cf"; depends=[ggplot2 reshape]; }; + itcSegment = derive2 { name="itcSegment"; version="0.4"; sha256="06bdh8dw9ddmy27jnpy3x1z27kygdh32rcxjff1kx4lhfyj1bkid"; depends=[maptools raster rgeos sp]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive2 { name="iterLap"; version="1.1-2"; sha256="0ixh9aw115496ib0iswfsj97rjcd2f02z116dg57vl9hhzh28f13"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.8"; sha256="1f057pabs7ss9h1n244can26qsi5n2k3salrdk0b0vkphlrs4kmf"; depends=[]; }; @@ -6243,20 +6408,20 @@ in with self; { james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; }; janeaustenr = derive2 { name="janeaustenr"; version="0.1.4"; sha256="1yxk94acscq43gs3m0n0x3805dr71kn4wf3ws7rg62p2bd22b09i"; depends=[]; }; janitor = derive2 { name="janitor"; version="0.2.1"; sha256="14jb3viyrmxc0grrkkw86z6s7c3sq0a07mhpyzw1xsy5gfda29yi"; depends=[dplyr tidyr]; }; - jetset = derive2 { name="jetset"; version="3.3.0"; sha256="1lyjrakk8f25541v7q3zwam7xbxykh75r0czk6qvil92a9y1005r"; depends=[AnnotationDbi org_Hs_eg_db]; }; + jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jiebaR = derive2 { name="jiebaR"; version="0.9.1"; sha256="1qv4k5fgi40ppivdk3mxkhawyf2443h2lz5b9gvai9sqj6vf0s8k"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; jmcm = derive2 { name="jmcm"; version="0.1.7.0"; sha256="0qq7dc6i5w5r276r7l9j29f783s41y3gp70hj5cz72wkmhdnvg4j"; depends=[Formula Rcpp RcppArmadillo]; }; jmetrik = derive2 { name="jmetrik"; version="1.0"; sha256="0xnbvby03fqbxgg0i0qxrrzjv98783n6d7c1fywj81x487qlj77j"; depends=[]; }; jmotif = derive2 { name="jmotif"; version="1.0.2.900"; sha256="0zgj1g8vy2cj2kyschbr1xb1mb862gniva0sa8qr9p8vvb03ja4v"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="1.3"; sha256="1lzqpdy2987szihsjaq6l1iggjhji0li4cj7914myj3vzfcif8gw"; depends=[]; }; - jmv = derive2 { name="jmv"; version="0.7.0.3"; sha256="0knrpnr2mpq2h1s6xis6wsf3k6yc142mfmrmp8s53s29zlzs6ljr"; depends=[afex BayesFactor car GGally ggplot2 GPArotation jmvcore lsmeans lsr multcomp PMCMR psych R6 vcd vcdExtra]; }; - jmvcore = derive2 { name="jmvcore"; version="0.4.0"; sha256="0kga95ryxvvgdlc1z9s53bmasfizyl6gvxjwp55nf2k0pm0lx6sf"; depends=[base64enc R6 rjson]; }; + jmv = derive2 { name="jmv"; version="0.7.0.6"; sha256="0x9p984nka3a4lv5bj1lhqn8rns9rmfjsfrvcaxj3ihrbvy0sawb"; depends=[afex BayesFactor car GGally ggplot2 GPArotation jmvcore lsmeans lsr multcomp PMCMR psych R6 vcd vcdExtra]; }; + jmvcore = derive2 { name="jmvcore"; version="0.5.1"; sha256="0sxypfcxnc31ak39rgc8ck8x1l7723qgskfmxhp1x07lcqx9b433"; depends=[base64enc R6 rjson]; }; jocre = derive2 { name="jocre"; version="0.3.1"; sha256="01mnd2dzm3bnbdxg0grj10ashpxzgsk68lfx7ssxk7pnfxnbc39h"; depends=[boot KernSmooth plyr]; }; joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; }; joineR = derive2 { name="joineR"; version="1.1.0"; sha256="13b3syh20d0wrfh8gama16ajc73nzd5rq4pgyrdw8m94ybmg559v"; depends=[lattice MASS nlme statmod survival]; }; - joineRML = derive2 { name="joineRML"; version="0.1.1"; sha256="0m8cyjrhbk0bspigpjh30g74084hdn0q4zg9364vp2dmna092m47"; depends=[lme4 MASS Matrix nlme Rcpp RcppArmadillo survival]; }; - joint_Cox = derive2 { name="joint.Cox"; version="2.10"; sha256="1vfndask1njl01h4vqbsbhvd5vpy432wapp6vz2byddb358hg4rh"; depends=[survival]; }; + joineRML = derive2 { name="joineRML"; version="0.2.0"; sha256="198xrls5bdslrdl7j90asm8daqls78axy486gpnq03scw81cj4qn"; depends=[ggplot2 lme4 MASS Matrix nlme Rcpp RcppArmadillo survival]; }; + joint_Cox = derive2 { name="joint.Cox"; version="2.11"; sha256="0k1hpg0i1prxzvjfsndbgw4g2k0lli0niql8b79z91api472hjf9"; depends=[survival]; }; jointDiag = derive2 { name="jointDiag"; version="0.2"; sha256="0y1gzrc79vahfhn4jrj5xys8pmkzxj4by7361730gi347f0frs0a"; depends=[]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; @@ -6268,13 +6433,13 @@ in with self; { jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; }; jrvFinance = derive2 { name="jrvFinance"; version="1.03"; sha256="16mki26ns593xn1p1la2ihkddlwvzwdvjr3h2vz71bq5db11iffq"; depends=[]; }; js = derive2 { name="js"; version="0.2"; sha256="1dxyyrmwwq07l6pdqsvxscpciy4h1021h9ymx8hi2vqvv0mdrz76"; depends=[V8]; }; - jsonld = derive2 { name="jsonld"; version="1.1"; sha256="1bmfdcyjcz3cgy0vkliwvd97kww8djdib08bsq99v485gspl2x87"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.3"; sha256="0y55znjn69af4d4cy7n8r3nlgblnri7vdhvzpvp4fq4n43faqzsw"; depends=[]; }; + jsonld = derive2 { name="jsonld"; version="1.2"; sha256="1y4574ai4m31x4yjx5bp9i8wfgcgjgfr8jn5nn0x6qzlnjg58gyz"; depends=[curl jsonlite V8]; }; + jsonlite = derive2 { name="jsonlite"; version="1.4"; sha256="11rgkjp5qir79niad0aizjxvjzyvkl6l9nsrv3ikv446vllmrasn"; depends=[]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; }; jtGWAS = derive2 { name="jtGWAS"; version="1.5"; sha256="01f1wrbgj7v6pzrx5vd8pgpm78fanyx59s84m5a5732q5g39shlk"; depends=[Rcpp]; }; - jtools = derive2 { name="jtools"; version="0.4.2"; sha256="0jzp284ac43s89p9cl5f3x8jcsw09ywjwi5b72zlwbx2a6x6bbq4"; depends=[]; }; + jtools = derive2 { name="jtools"; version="0.4.4"; sha256="17y5v24zn2sin9yxyyp42kp40fzq8967jfssi3fi4vf66vny4p2s"; depends=[]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; - jug = derive2 { name="jug"; version="0.1.6"; sha256="19n6fi26yssid1xlixwmvqd6720rvn2jcnw7347izsmlxxyip6hv"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; + jug = derive2 { name="jug"; version="0.1.7"; sha256="01m6hyr26f6zih49pz2bmmr8ypdl1qiz0wv3padcy68kaccf44a4"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; }; junr = derive2 { name="junr"; version="0.1.1"; sha256="1rkr6kyf2p3rr39w0nqfvcrcd2b0r411if7812zijnn20vrmsmda"; depends=[httr jsonlite]; }; jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; }; jwutil = derive2 { name="jwutil"; version="1.1.1"; sha256="114vph86722v89iwyla7skl06cv87ymfy6nmca5iyxwx1z78zddz"; depends=[checkmate Rcpp]; }; @@ -6287,14 +6452,15 @@ in with self; { kaps = derive2 { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; - kdecopula = derive2 { name="kdecopula"; version="0.8.0"; sha256="1s116d6qh4zc7gazhylhzcwiifkd2xmaqi58r4ns82d7rv54gkaf"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; + kdecopula = derive2 { name="kdecopula"; version="0.8.1"; sha256="0rn533dzgq6c3cbmiz9f7qzp0yj9fzsmi8y1vabqzrn63dgckvkv"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; kdevine = derive2 { name="kdevine"; version="0.3.0"; sha256="0imi8n70xw8bmxnqw4fam6d85ib7bhaygg3q56xrml7mn2wik4gc"; depends=[doParallel foreach kdecopula ks qrng Rcpp VineCopula]; }; kedd = derive2 { name="kedd"; version="1.0.3"; sha256="17rwz3yia95xccbxwn43wr6c9b3062094yfahnnnk3wfijyhlxiq"; depends=[]; }; keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; }; kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; }; - kequate = derive2 { name="kequate"; version="1.6.0"; sha256="0m8l1d43gb25zdwbv0ymnazm02m2qxg5pcir37n55sl08dh0zyby"; depends=[equateIRT ltm mirt]; }; + kequate = derive2 { name="kequate"; version="1.6.1"; sha256="1rjya1rnlfk2ziiwhkgshlyk3g0388591q3q01a3vgmgsb3cpxl6"; depends=[equateIRT ltm mirt]; }; + kerasR = derive2 { name="kerasR"; version="0.4.1"; sha256="07xnkfp4mpgw2m3z7qzv4m3r4jnb0lwaz5li67shpr3zdvhj4m4s"; depends=[reticulate]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; }; kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.1"; sha256="1ypyb6i64jskq2agbpb6wc6y3fn4i7z4fjjfpl97q8f0rif1lpfj"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; }; @@ -6341,10 +6507,10 @@ in with self; { knockoff = derive2 { name="knockoff"; version="0.2.1"; sha256="197icnyxxmi6f0v0p2zm4910grbgkfjkd3xql79ny04ik047v0kp"; depends=[glmnet RJSONIO]; }; knotR = derive2 { name="knotR"; version="1.0-1"; sha256="02mr950150m2gzagxf5yzps8fnwspagh3k8prh9zww2jss0471rm"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.0"; sha256="0vcmm4vjawmyaqpqv0g6y5dfcixn0rjhcfr3nfc2781a4w7ydnc9"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr]; }; - koRpus = derive2 { name="koRpus"; version="0.10-1"; sha256="1f7mspq7iiahpqfj57n63i8b0qs73qgmvpgm1yxi0ax5zjdnspqb"; depends=[data_table]; }; + koRpus = derive2 { name="koRpus"; version="0.10-2"; sha256="1ykaky10zkj76w44fhk6kb6dqz1pgncmdnz4r2amcm08a8h96gsr"; depends=[data_table]; }; kobe = derive2 { name="kobe"; version="1.3.2"; sha256="1z64jwrq6ddpm22cvk2swmxl1j7qyz0ddk3880c7zfq6gk7f9bxl"; depends=[coda emdbook ggplot2 MASS plyr reshape]; }; kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; }; - kohonen = derive2 { name="kohonen"; version="2.0.19"; sha256="0fi94m2gpknzk31q3mjkplrq9qwac8bjc8hdlb3zxvz6rabbhxrr"; depends=[class MASS]; }; + kohonen = derive2 { name="kohonen"; version="3.0.2"; sha256="1dg2jmdlp888bcfkpmd8w9w9dj7y9r94fgr7gl2fkhlhkid9ss78"; depends=[MASS Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.2.0"; sha256="1sk7r5v3d65w126vin9gawan3f21zrd9ps974l9nxj7kv1pa3szh"; depends=[digest dplyr httr purrr rgdal shiny xml2]; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; }; @@ -6352,7 +6518,8 @@ in with self; { kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; krm = derive2 { name="krm"; version="2016.7-9"; sha256="0yc8agnb4685fa00pnwsxwc4vnr2aj2dwb6zxppj62r6c59xl47f"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.10.5"; sha256="12ianxlfrdzvb56y42p3mpyl01fqxrm97xym4wghvqyz59w0x51k"; depends=[KernSmooth misc3d multicool mvtnorm rgl]; }; + ks = derive2 { name="ks"; version="1.10.6"; sha256="07gdh95y16yy2qabl2bhlnad6ifclak81lwjza0v25nw2zklwfcf"; depends=[FNN KernSmooth misc3d multicool mvtnorm rgl]; }; + kscons = derive2 { name="kscons"; version="0.7.0"; sha256="1i4dp56y9swl5s6cipqlm5i5fknz2v0yz5g930cl5i8kx91rxwrp"; depends=[]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; }; kst = derive2 { name="kst"; version="0.2-1"; sha256="1wy9cvvln994qgr0p7qa9qs1jd7gjv6ch65gg6i42cf9681m9h65"; depends=[proxy relations sets]; }; @@ -6367,6 +6534,7 @@ in with self; { kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; }; kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; }; l0ara = derive2 { name="l0ara"; version="0.1.3"; sha256="0igav0wxvnnjcrh1wqzgvn91ndq9a25yxhxyddnsfvn6f45rc0wn"; depends=[Rcpp RcppArmadillo]; }; + l1kdeconv = derive2 { name="l1kdeconv"; version="1.1.0"; sha256="0dks5y49kpbw4iryjx5ai3sa052xk6vd8j729b43qjg2x08zdp34"; depends=[]; }; l2boost = derive2 { name="l2boost"; version="1.0"; sha256="1p0sbvlnax4ba4wjkh3r0bmjs601k590g7bdfk6wxvlj42jxcnkl"; depends=[MASS]; }; laGP = derive2 { name="laGP"; version="1.3-2"; sha256="197mp5rlrfyp9aankbi1lw40vn7m9pkkq7rpr1a6y7x4sp3spr4m"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; }; @@ -6393,10 +6561,9 @@ in with self; { languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.0.0"; sha256="0lca079nnqppbr7k5pfa7qfc879kws34hrxcs49y12qfv7hsk576"; depends=[httr magrittr rjson]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - largeList = derive2 { name="largeList"; version="0.3.0"; sha256="0lviw0rzpd7453y0swab74kg8yc2byg88ca1fmf1f8zffgrdx9ld"; depends=[]; }; - largeVis = derive2 { name="largeVis"; version="0.1.10.2"; sha256="16qsc0jv8gbacgjal6hkqdm52yd0n973bkgab0zp1hldj9m4ykl2"; depends=[dbscan ggplot2 Matrix Rcpp RcppArmadillo RcppProgress testthat]; }; + largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; + largeVis = derive2 { name="largeVis"; version="0.2"; sha256="14rbgx68d9alxxm9w29mddh211d9ywdancyzwc2bg8862bqnsnqv"; depends=[ggplot2 Matrix Rcpp RcppArmadillo RcppProgress testthat]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; - laser = derive2 { name="laser"; version="2.4-1"; sha256="1f6j3xdks0w63fqjj9q8ng2m6ss90kcnsrigwal0bqskpvrpiqyz"; depends=[ape geiger]; }; lasso2 = derive2 { name="lasso2"; version="1.2-19"; sha256="0zkwjsd42a6z4gylq9xbs4z8n1v7ncwvssjnn3h4yz1icjfzzlvk"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.1.3"; sha256="07b7n74z4jvrirf0rc0sbvz9nm2s2s22mb8y973iwpf0i7fqxq2c"; depends=[lars]; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; @@ -6405,13 +6572,13 @@ in with self; { latdiag = derive2 { name="latdiag"; version="0.2-3"; sha256="0i2mqk3ldg5kf4d8sfljgjsqbdin7v69anmc2rrxgy28bmvykf9d"; depends=[]; }; latentnet = derive2 { name="latentnet"; version="2.7.1"; sha256="0bjac9cid11pmhmi2gb4h3p4h9m57ngxx7p73a07afmfjk9p7h5m"; depends=[abind coda ergm mvtnorm network sna statnet_common]; }; latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; }; - lattice = derive2 { name="lattice"; version="0.20-34"; sha256="0615h69czr73k47whhzimf1qxv5qk0cabcrkljwhyrn6m6piq6ja"; depends=[]; }; + lattice = derive2 { name="lattice"; version="0.20-35"; sha256="0pcnmaz3lr62ly0dcy5hnnqxshc4yqd43hrvlz3almgc9l7sna88"; depends=[]; }; latticeDensity = derive2 { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; }; latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; }; - lava = derive2 { name="lava"; version="1.4.7"; sha256="1gzla8ns3n899vfz80yjx8bb2pcnrvp52c5rxxw591clba1x9jym"; depends=[numDeriv survival]; }; - lava_tobit = derive2 { name="lava.tobit"; version="0.4-7"; sha256="1da98d5pndlbbw37k64fmr2mi1hvkhjxsmm3y9p4b772pz9i1pvj"; depends=[lava mvtnorm survival]; }; + lava = derive2 { name="lava"; version="1.5"; sha256="0x6s7x111x87a4rh5nbk7vw6j4iq40i1c21w0j795h28rgyc7zc2"; depends=[numDeriv survival]; }; + lava_tobit = derive2 { name="lava.tobit"; version="0.5"; sha256="15dlcjgnvrpdxymcwf4rvk72ssr650dy1ayp50zlrp2va0p6h4kw"; depends=[lava mets mvtnorm survival]; }; lavaan = derive2 { name="lavaan"; version="0.5-23.1097"; sha256="11wxzjg09q5wzvbp1lhi9sjnp4rrjpdxnmq3zf8npx08iwkw79ws"; depends=[MASS mnormt numDeriv pbivnorm quadprog]; }; - lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.1"; sha256="06k9myq33p9jz7rz6ffansgi27ang4gq0s179vgsrdi10krxxg1b"; depends=[lavaan psych semPlot shiny shinyAce]; }; + lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; }; lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; }; lawn = derive2 { name="lawn"; version="0.3.0"; sha256="0rws76dzpi2gpn90la663r1g9ywvpvjicjmgb6z7k5xg1gspgs5c"; depends=[jsonlite magrittr V8]; }; lawstat = derive2 { name="lawstat"; version="3.1"; sha256="0sdsxh2h06d3maqd1pvmnnvphaxav0z2kv5wpiy7dg17cgwv35c2"; depends=[Hmisc Kendall mvtnorm VGAM]; }; @@ -6428,7 +6595,7 @@ in with self; { lbreg = derive2 { name="lbreg"; version="1.0"; sha256="03pr5mjk3pfnlfafx6gk9xjsy4m5m7lj4zzvsngl95rr8hnnvvlf"; depends=[MASS]; }; lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; - lcmm = derive2 { name="lcmm"; version="1.7.6"; sha256="04vapw0iwwsx3zn5q84cildr7aprr9pyrkq4gacfi8baahpqj1w9"; depends=[survival]; }; + lcmm = derive2 { name="lcmm"; version="1.7.7"; sha256="079673yy6ljk8nj06pcf1wh83j1dh3klp50zssvfgz1cxph8h471"; depends=[survival]; }; lcopula = derive2 { name="lcopula"; version="1.0"; sha256="07a9k5fp03s6jnjawg11j4458xrsrrqxv6kf3cs58ymv0j2s1qyd"; depends=[copula pcaPP Rcpp]; }; lctools = derive2 { name="lctools"; version="0.2-5"; sha256="02xbcmdz12vxi1hjrhibavnf792lqpjraknxz6sqz7fhfqrd8qbq"; depends=[MASS pscl reshape weights]; }; lda = derive2 { name="lda"; version="1.4.2"; sha256="03r4h5kgr8mfy44p66mfj5bp4k00g8zh4a1mhn46jw14pkhs21jn"; depends=[]; }; @@ -6436,48 +6603,51 @@ in with self; { ldatuning = derive2 { name="ldatuning"; version="0.2.0"; sha256="18nm4hj7733c1cp03hyddnivhiiyv7ndnw9m6j3af019jjmvf215"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.1"; sha256="1c34k16d740b8xfb6b2igl12hzqll87dsgm631ksp53v7j3qg7pz"; depends=[mnormt RANN]; }; ldbounds = derive2 { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; }; + ldhmm = derive2 { name="ldhmm"; version="0.1.0"; sha256="19m1zdbksxx0f6zkky38kym0qba76p51zgc0i9rjn20ql41w8fdb"; depends=[ecd moments xts zoo]; }; ldlasso = derive2 { name="ldlasso"; version="3.2"; sha256="0ij68zvgm8dfd2qwx6h6ygndac29qa0ddpf11z959v06n8jsnk11"; depends=[GenABEL quadprog]; }; ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; }; ldstatsHD = derive2 { name="ldstatsHD"; version="1.0.0"; sha256="1phz9hwhfw7lcvz5gg0l3w3j3jig0bw4wxbx6j4z7dlr4bisyng8"; depends=[camel cluster corpcor evd fExtremes huge igraph MASS Matrix RBGL robustbase VGAM]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leaflet = derive2 { name="leaflet"; version="1.1.0"; sha256="05faikqdlbsj9lvl1lvhmagys71597jvgah8b9f1fqhgyj0bwx7l"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.1.0"; sha256="0y7vyv245arr286j75yap6caq3bw0k147p3p5br0kw4nd6v85jgx"; depends=[htmltools leaflet]; }; leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; }; leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; }; leaps = derive2 { name="leaps"; version="3.0"; sha256="11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"; depends=[]; }; learNN = derive2 { name="learNN"; version="0.2.0"; sha256="0q0j25vi7hrwaf38y10m24czf3rsvj937jvkz3ns12bd8srlflah"; depends=[]; }; - learningCurve = derive2 { name="learningCurve"; version="1.0"; sha256="0hfd793kk1rl224y2vb51b0xf29xinix9q91nv51047lm6hkcfah"; depends=[ggplot2]; }; + learningCurve = derive2 { name="learningCurve"; version="1.1.1"; sha256="1rvh6i3vmwrff491k9w551402m3i9sra8rzkljgk9b5fmw7hk5ki"; depends=[ggplot2 gridExtra scales tidyverse]; }; learningr = derive2 { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lessR = derive2 { name="lessR"; version="3.5.5"; sha256="05pf0l4irsv71c7ywdq92gwl58caphjxlxkls6vs89prib2bj4sf"; depends=[ellipse foreign leaps png readxl sas7bdat triangle]; }; + lero_lero = derive2 { name="lero.lero"; version="0.1"; sha256="1jndsgy48fn085ilkh8dfc3w76kfnfj0x70d1m3h59zxi3x9lb82"; depends=[stringr]; }; + lessR = derive2 { name="lessR"; version="3.6.0"; sha256="0a2l1gmpfbwkxavih4h1w7rzibgf6zql7k2nzck05f0pyzd0bvvx"; depends=[ellipse foreign lattice latticeExtra leaps png readxl sas7bdat triangle]; }; lestat = derive2 { name="lestat"; version="1.8"; sha256="12w3s5yr9lsnjkr3nsay5sm4p241y4xz0s3ir56kxjqw23g6m80v"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="2.6"; sha256="19gs0xlbjvx95047pzzl36x42898qkc61qgr1isavf7hph41ak46"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; }; lexRankr = derive2 { name="lexRankr"; version="0.4.0"; sha256="149q96yyag375ggflrginim9phbmqaap3hpgjx02rqmbdf38dywg"; depends=[dplyr igraph magrittr Rcpp SnowballC stringr tidyr tm]; }; - lexicon = derive2 { name="lexicon"; version="0.1.1"; sha256="0iibyzmgmkkmw0x7n9j1hklf7ff0r0aayb7khg9wbgsa7x1z20im"; depends=[]; }; - lfactors = derive2 { name="lfactors"; version="1.0.0"; sha256="0j2sq3kh9qgc8z7q8j6fl2n4zih8b7y1yapswsw928b1glava8p7"; depends=[]; }; + lexicon = derive2 { name="lexicon"; version="0.3.1"; sha256="1r4sjn2490f4df7bgivani0m1ghxfn1kxyc3bp82305kwj8y70sh"; depends=[data_table syuzhet]; }; + lfactors = derive2 { name="lfactors"; version="1.0.1"; sha256="13vjafbss0860fi4qcf23g3cjs9dlr2k5f3majbnyvhwsbfs7cla"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; }; lfe = derive2 { name="lfe"; version="2.5-1998"; sha256="0i1vs9m8a9dadansczwg7jbah73bnxvidrld9inf8xyi8x15265z"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="1.3"; sha256="14x731f4gnwisd0l14l03bpmn4m2rizdfrc36bjh3lvjbv0raqhs"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.3-15"; sha256="16a8bg40pravg7jxnqxp74rnncgwxy5jki27038497ask5yxzpdd"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat]; }; + lgcp = derive2 { name="lgcp"; version="1.4"; sha256="10gnfqq5vx18w6f52fliyfnrjmyns9q5q59pn2m82q2fqwaz26d8"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.4"; sha256="0y519hgrm2ynbhbs61vi8gkhwqgn69wpnd391wpgf4yrg2lx064b"; depends=[]; }; lhs = derive2 { name="lhs"; version="0.14"; sha256="1qnr3s9511nq3xqdbngllmw3mvnnpblma5dafyghxlpvydc2l481"; depends=[]; }; libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; }; - libcoin = derive2 { name="libcoin"; version="0.9-1"; sha256="0whxgylcrhm03yln8k11cxr3bcjkvhyqhgj0yc8wc4avaq6gl1dh"; depends=[mvtnorm]; }; + libcoin = derive2 { name="libcoin"; version="0.9-2"; sha256="0bya71i853vjg8wdbnm70c1fzx5az7a2bsf6s41ysd020ixdg1jj"; depends=[mvtnorm]; }; libsoc = derive2 { name="libsoc"; version="0.5"; sha256="0p01mcwnkb4g3dq0mx1gbwfbznp4b2dmhs8k8wmnh7wll16v9i6z"; depends=[]; }; - lidR = derive2 { name="lidR"; version="1.1.0"; sha256="04skxqjcq27fbkfc274575r215iv13xhjyzdwlr2hf6ksnn54jdf"; depends=[data_table lazyeval magrittr RANN raster Rcpp rgeos rgl rlas]; }; + lidR = derive2 { name="lidR"; version="1.2.0"; sha256="177lqglhs4fmyf7818z1klirxjm5rrpghjkzrdi19sgw137w9ljm"; depends=[data_table geometry gstat lazyeval magrittr RANN raster Rcpp RcppProgress rgeos rgl rlas]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.2.3"; sha256="1gkvrzcmcic3rzbcfp5lif4zfc94bhfm36i3ajzaczwjhg2dwivs"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; }; liftLRD = derive2 { name="liftLRD"; version="1.0-5"; sha256="0v0aczf9s3vr9kk7n6z9spwc82hf418v9vjiyfri3npn3ib112b7"; depends=[adlift nlt]; }; - liftr = derive2 { name="liftr"; version="0.4"; sha256="10r29z9p83cmvgwrcwbb3ws8ayvjmvqgvx83ppa9p01rgw6n9jwq"; depends=[knitr rmarkdown stringr yaml]; }; + liftr = derive2 { name="liftr"; version="0.5"; sha256="0pk1w9h83ixf3ia4qxcb85i0n4jr5hfry6rc3yx3pki3r7wlqyam"; depends=[knitr rmarkdown rstudioapi stringr yaml]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; - likeLTD = derive2 { name="likeLTD"; version="6.1.1"; sha256="0yf0lnzarl6hgs21l6acjcz40dsw269pagxkfcl5fqpkb53rnqgq"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; + likeLTD = derive2 { name="likeLTD"; version="6.2.0"; sha256="14wyh46hk98jdmpmg1br4x7pc97zkh49k2pgq6yfsigax6l9vd8i"; depends=[DEoptim gdata ggplot2 gtools rtf]; }; likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.45"; sha256="0sl0q6w49l89i6s80scsr5lrr8jgdd0788i4b87w985zaxjqrh03"; depends=[alabama cond nleqslv pracma Rsolnp]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; @@ -6485,10 +6655,10 @@ in with self; { limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; - linbin = derive2 { name="linbin"; version="0.1.1"; sha256="0i99j7n1hxvnm2605b2xr4mxpib64abr10wp03nxii16nssvv66m"; depends=[]; }; + linbin = derive2 { name="linbin"; version="0.1.2"; sha256="0shw976nlryjvmvnyyiycchqs7zcg5flalywm1ymnv62nw3n55xs"; depends=[]; }; linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; lineup = derive2 { name="lineup"; version="0.37-6"; sha256="1xyvw00lwnx7j3cgk4aw69lam6ndjxx3wj14h4jpx1xn8l3w7652"; depends=[class qtl]; }; - lingtypology = derive2 { name="lingtypology"; version="1.0.2"; sha256="1m0szmlraqvqvqcj5nlfkpcwckiagc31qkd834m00w47kggmzlhb"; depends=[leaflet magrittr rowr stringdist]; }; + lingtypology = derive2 { name="lingtypology"; version="1.0.3"; sha256="07xm01a9xw0k2kxl08b22182wxdrm16c2qlwbq3sphbq0zznfxb1"; depends=[leaflet magrittr rowr stringdist]; }; link2GI = derive2 { name="link2GI"; version="0.1-0"; sha256="1i16yf387izv8vn0z8f7wgk02hld83lhfb5c263mn1v3q5zj9kki"; depends=[gdalUtils raster rgdal rgrass7 sf sp]; }; linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; }; linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; }; @@ -6510,6 +6680,7 @@ in with self; { listviewer = derive2 { name="listviewer"; version="1.4.0"; sha256="1273vk8pk393ciwahvpmdh9z4xdlhw3a7mlm7jsqxqnsrc6jrz3x"; depends=[htmltools htmlwidgets shiny]; }; liteq = derive2 { name="liteq"; version="1.0.0"; sha256="1r3rbn0a5nnwrhfdygn1hlvv0n3nd1ayddvkpdv5ibsp5fl5vjhy"; depends=[assertthat DBI rappdirs RSQLite]; }; littler = derive2 { name="littler"; version="0.3.2"; sha256="0anwlxyj82xgrccb3pf6glrkqbkw1871hj4b1qrkmd5ss2f3xq9j"; depends=[]; }; + liureg = derive2 { name="liureg"; version="1.0"; sha256="1xpk7fis8qmfc853nzqzbs6f9ibix0vrh3f6h96m33hmzyqr7pgi"; depends=[]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; }; @@ -6519,7 +6690,7 @@ in with self; { lm_br = derive2 { name="lm.br"; version="2.8"; sha256="019j0ypl4cdnl29r9x17m62jnpp1p174zmy3zdy8bvp52kz4008r"; depends=[Rcpp]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; lmSupport = derive2 { name="lmSupport"; version="2.9.8"; sha256="1g96540krrvycy7m3avhwazkmnyngk9lrjggny4wxhzn49i8p4ga"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; }; - lme4 = derive2 { name="lme4"; version="1.1-12"; sha256="0j60l5kgx1wvw2wm3jwfqwi63hammaq8gfcxzwa4h552likvaxi9"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; + lme4 = derive2 { name="lme4"; version="1.1-13"; sha256="13j4a721rx0272pdxrz6nabjv56xb6srklq5w4z1abc82lyvda2z"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; @@ -6539,10 +6710,10 @@ in with self; { lmodel2 = derive2 { name="lmodel2"; version="1.7-2"; sha256="0dyzxflr82k7ns824zlycj502jx3qmgrck125im2k2da34ir3m3q"; depends=[]; }; lmom = derive2 { name="lmom"; version="2.5"; sha256="0s2x8k6p71hxdqggy8ajk7p9p040b9xr3lm49g31z3kcsmzvk23q"; depends=[]; }; lmomRFA = derive2 { name="lmomRFA"; version="3.0-1"; sha256="0lf8n6bhdv3px6p60smghvmwsbgawvjrmgy2dfhs517n67pxg30i"; depends=[lmom]; }; - lmomco = derive2 { name="lmomco"; version="2.2.5"; sha256="0xk114vc9pz0f2nfzfyh43idz0hrn0w4g1j3kidlqhnd96g576vs"; depends=[goftest Lmoments MASS]; }; + lmomco = derive2 { name="lmomco"; version="2.2.7"; sha256="1xrw2a3iyp0i2kmcwgq0sr10v40q5c2n84xx8dxpvl3978vqidj8"; depends=[goftest Lmoments MASS]; }; lmridge = derive2 { name="lmridge"; version="1.0"; sha256="07zchmdcyz8agrs9q2ydcgicz3sxg893vv4rsynlpgyk2z5xnnjf"; depends=[]; }; lmtest = derive2 { name="lmtest"; version="0.9-35"; sha256="107br1l7p52wxvazs031f4h5ryply97qywg9dzrkw4ydnvqq4j9g"; depends=[zoo]; }; - lmvar = derive2 { name="lmvar"; version="1.0.0"; sha256="03j7ix7f0n4jlrvffs37mrjvl1bbz2q0cqc1qaqpk1davmxc1vfi"; depends=[Matrix matrixcalc nleqslv]; }; + lmvar = derive2 { name="lmvar"; version="1.1.0"; sha256="08m7z9mm4pk5x3a2kll9hvkxw3r7lzqpxwp0pgcyxxdygc6xgzjq"; depends=[Matrix matrixcalc maxLik]; }; loa = derive2 { name="loa"; version="0.2.38"; sha256="1k57n3j8nh0frgabhb5gh0scmgp5gzn2zc9l206mklbw06jkdp96"; depends=[lattice MASS mgcv png RColorBrewer RgoogleMaps]; }; localdepth = derive2 { name="localdepth"; version="0.5-7"; sha256="0h0y74xnhdqa7y51ljmpz7ayznppvy2ll06wfds6200lb9cxgr7k"; depends=[circular]; }; localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; }; @@ -6554,7 +6725,7 @@ in with self; { lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; log4r = derive2 { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; }; - logbin = derive2 { name="logbin"; version="2.0.1"; sha256="13fxq3lslsmial52ih80ziagbkm00a8681dnnn3s8kykqg1m8v7f"; depends=[glm2 turboEM]; }; + logbin = derive2 { name="logbin"; version="2.0.2"; sha256="08v8i6jlnlngvh977ndknhw2d9538nq6wy9fwnsdwp2m2ckh2w3j"; depends=[glm2 turboEM]; }; logconPH = derive2 { name="logconPH"; version="1.5"; sha256="05fkibgh5nzs8c4f39kzg4zyh2dfhg1k69hlx7l8p442snajsg92"; depends=[]; }; logconcens = derive2 { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; }; logcondens = derive2 { name="logcondens"; version="2.1.5"; sha256="1sq27klnphp74hq0l0460m9bb7lrl06mpgkg4qq8iciy3yy1mrkj"; depends=[ks]; }; @@ -6564,20 +6735,20 @@ in with self; { logistf = derive2 { name="logistf"; version="1.22"; sha256="0npwqbl8rfvn6w2y0qpkckj44mvjjccj0cn9axp2wcs03cmz0rp8"; depends=[mgcv mice]; }; logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; }; logitchoice = derive2 { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; }; - logitnorm = derive2 { name="logitnorm"; version="0.8.33"; sha256="1arsgc57vr77m9ygy0rbqkayj587k9k5k8nrr6k30v63qapc2irv"; depends=[]; }; + logitnorm = derive2 { name="logitnorm"; version="0.8.34"; sha256="08jm49picrxbwr8d0c64z5gbslrliq674vr0h30gljf3r9w6s5jj"; depends=[]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; - logmult = derive2 { name="logmult"; version="0.6.3"; sha256="05vxvi9zf2araxfng7gibak9g8m6vwmp7aclddpd814lxzmsmf8a"; depends=[gnm qvcalc]; }; + logmult = derive2 { name="logmult"; version="0.6.4"; sha256="1p40ava74qdhzysp9w8bkp7hiwr6wq61gvc0jlm4cppxa7ag2n5n"; depends=[gnm qvcalc]; }; logspline = derive2 { name="logspline"; version="2.1.9"; sha256="1kd7ricaxbcjl6d9hx7bb5mlkr7x2h7gc8vrmfvlzxppbcghb6vw"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; }; lomb = derive2 { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; }; - longCatEDA = derive2 { name="longCatEDA"; version="0.30"; sha256="1xj1lfwnsl864c0wycpwg8ibns6447l5988132p79a2rpd30rw3r"; depends=[]; }; + longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longclust = derive2 { name="longclust"; version="1.2"; sha256="1m270fyvfz0w19p9xdv7ihy19nhrhjq2akymbp774073crznmmw0"; depends=[]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; longmemo = derive2 { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; }; longpower = derive2 { name="longpower"; version="1.0-16"; sha256="0hbv43y0fgbv1qiczy4kibqc7pk7whrz4kyxshg8730y8g9wyxdi"; depends=[lme4 nlme]; }; longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; }; - loo = derive2 { name="loo"; version="1.0.0"; sha256="1c4knrcfc3r2yg9623lryfbndrv3fbz2ksascmi5wgik3fz44w01"; depends=[matrixStats]; }; + loo = derive2 { name="loo"; version="1.1.0"; sha256="0nh1jbrvm33v28gbys8sh6v4cxfzfd85561gz380b4kaahn2089l"; depends=[matrixStats]; }; lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; }; loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; loopr = derive2 { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; }; @@ -6588,9 +6759,10 @@ in with self; { lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17"; sha256="1gfxnjkhhyybhyg29qdrdqzwq569b6pgwjgacmw3q7aldc724cyz"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; }; + lpdensity = derive2 { name="lpdensity"; version="0.2"; sha256="1kjh6zw2g6izhnjrnr71lccryg2s89zlvc1q73cf7p62lnnmaqnz"; depends=[ggplot2]; }; lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; lplyr = derive2 { name="lplyr"; version="0.1.6"; sha256="1a7wry5v78z4aij7ii64340ycx30wqbm3x2wllka79gkll1fn78h"; depends=[bazar dplyr lazyeval magrittr]; }; - lpme = derive2 { name="lpme"; version="1.0.1"; sha256="0f0xphlxl0ma3s2miadl74cb1l20cikqgk3nc1dg5ml05cqzhyxr"; depends=[Rcpp RcppArmadillo]; }; + lpme = derive2 { name="lpme"; version="1.1.0"; sha256="1mq1lf4vdlbxjax9p8k17vdkc2h3xslbbs17xzy10fbkdicljc10"; depends=[decon flexmix Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-7"; sha256="0nkl70fwzra308bzlhjfpkxr8hpd8v1xdnah7nscxa10qlisgr2k"; depends=[]; }; lqa = derive2 { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; }; @@ -6604,10 +6776,11 @@ in with self; { lsbclust = derive2 { name="lsbclust"; version="1.0.4"; sha256="0a0l1vvr4gp1vvqccjicy4qh7l2kwyh7k503yi403d0987zqywcc"; depends=[clue ggplot2 gridExtra plyr Rcpp reshape2]; }; lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.1-1"; sha256="1akvkccf2cq331agcsi24x3cw73cc8vdl7kw3zjyg8q6lmvq78am"; depends=[]; }; - lsgl = derive2 { name="lsgl"; version="1.3.5"; sha256="0afg1n03zl00b0w87j4v8afp1q6h5d8kx8xgciy52dki4yvb1c3r"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; + lsgl = derive2 { name="lsgl"; version="1.3.6"; sha256="0zkv5xgwrnwx0w0qpzsg7krd7fdnlr3a85q64xj1wx0gd578dqq6"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; lsl = derive2 { name="lsl"; version="0.5.5"; sha256="0555za3yqqdbcpxrl6vzj494784xl1wsmwp1apszaqncz2vwc9pg"; depends=[ggplot2 lavaan reshape2]; }; - lsmeans = derive2 { name="lsmeans"; version="2.25"; sha256="0akz77f4fhkarjf3nn4y3nfh1xflxjzj4jxaw4c7l4dhia7pji30"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; + lsmeans = derive2 { name="lsmeans"; version="2.25-5"; sha256="1kiwp9z034s182d6d1hwv8gcr263i514jvr5hkj63wmk5fbjlcvw"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; }; + lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; }; lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; }; lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; }; lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; }; @@ -6623,12 +6796,12 @@ in with self; { lucid = derive2 { name="lucid"; version="1.4"; sha256="1kwl9h7ynp8nhny51xskrbgc3060bawxjkdijhsjzss2hbbygwds"; depends=[nlme]; }; lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; }; ludic = derive2 { name="ludic"; version="0.1.5"; sha256="03ywna9fd2ypwchwx58ccmlxjdnx7zav7pqxwrc5bh3hrfbsxl13"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; }; - lulcc = derive2 { name="lulcc"; version="1.0.1"; sha256="1xq4rjsds9vwj4prkjxfcp9sv53ha9pj65ns0frpbh8grvrjwimv"; depends=[lattice raster rasterVis ROCR]; }; + lulcc = derive2 { name="lulcc"; version="1.0.2"; sha256="1vlaidyqgx5vnf8w2y1a1jmmq7z4195avnv1mryhh414r5r1kpy0"; depends=[lattice raster rasterVis ROCR]; }; lumendb = derive2 { name="lumendb"; version="0.2.2"; sha256="0x1k90h6aw7fpvmgbbdmkqvgxfnn4w5xxfck7f4r7zhaxfqbzp2s"; depends=[httr xml2]; }; lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; }; luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; }; lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; }; - lvnet = derive2 { name="lvnet"; version="0.3"; sha256="17kp1r6dxajql8b7lzr8s6wv1gqvradbxivz5gnnhdkmx290asaz"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; + lvnet = derive2 { name="lvnet"; version="0.3.1"; sha256="1bzykd70j8xbvpxqwdac49pv7ndvjqljwywhbf6sn3yvq72n3hlj"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; }; lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; }; lxb = derive2 { name="lxb"; version="1.5"; sha256="16x1mvhxqhvibzmv6mlqcmkgic2sha1xagf7r2azmn4z8x1m9w6n"; depends=[]; }; lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; @@ -6638,10 +6811,12 @@ in with self; { mFilter = derive2 { name="mFilter"; version="0.1-3"; sha256="1cz9d8447iiy7sq47civ1lcjafqdqs40lzxm2a4alw4wy57hc2h6"; depends=[]; }; mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; }; mHG = derive2 { name="mHG"; version="1.0"; sha256="18hj9chp9dy6nmi5w0808nivqbyni117darvdpf03kzq5ym8dlm6"; depends=[]; }; + mMPA = derive2 { name="mMPA"; version="0.1.0"; sha256="1p9rzk1x5ldb3afr53f195vb4jdj8kw50rmv961k2jsw128mrzr5"; depends=[]; }; mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; }; mRMRe = derive2 { name="mRMRe"; version="2.0.5"; sha256="1lhpamjy8dbk3lzjj0wj041cg99rw6925i9fq297c93jxq562414"; depends=[igraph survival]; }; + mRchmadness = derive2 { name="mRchmadness"; version="1.0.0"; sha256="0f6cb3d5dhp6b0dd0fshplp75jjbhx3v9r53pa8gmcfd10hvbqba"; depends=[dplyr glmnet Matrix rvest shiny xml2]; }; mRm = derive2 { name="mRm"; version="1.1.6"; sha256="1d897c5xflbkkj25hw15rd62nggv000cv2j481x0lhdgmgldjhrh"; depends=[]; }; - maGUI = derive2 { name="maGUI"; version="2.1"; sha256="16q6hiadqwwm7viz29kn420fi5ca5hx7azgrz0vsvv3bnr0y7aq5"; depends=[affy amap annotate beadarray Biobase BiocInstaller Biostrings Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets gWidgetsRGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; + maGUI = derive2 { name="maGUI"; version="2.2"; sha256="0b0iprpb4mnaj4lpaismr0f1rnq4m0b61imcx8mrffw9mx45qapv"; depends=[affy amap annotate beadarray Biobase BiocInstaller Biostrings Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets gWidgetsRGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; }; maRketSim = derive2 { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; }; maSAE = derive2 { name="maSAE"; version="0.1-5"; sha256="0v0vlj41j3ddyxv8lld39k1ryrdjin7r6bj13x2agbklb1fd4an1"; depends=[]; }; maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; }; @@ -6651,7 +6826,7 @@ in with self; { macleish = derive2 { name="macleish"; version="0.3.0"; sha256="05zmk28yh54gnm09aps3q64s4igcb629b3zx7giinlfc4xx8qv74"; depends=[DBI dplyr etl lubridate readr]; }; mada = derive2 { name="mada"; version="0.5.7"; sha256="0a2m1rb4d143v9732392xzvbg6x1k3l0g3zscgbx64m21kxshmgb"; depends=[ellipse mvmeta mvtnorm]; }; maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; - madness = derive2 { name="madness"; version="0.2.0"; sha256="02swq1hzmsdcfjhlmjykd81cyygxfx4add9caj2q2z6xhmfh3rlv"; depends=[expm matrixcalc]; }; + madness = derive2 { name="madness"; version="0.2.1"; sha256="1as5y9gpa4pr0r2hb0mw0gf7dy2779hqp1vghl53ccd8zj50i2fz"; depends=[expm matrixcalc]; }; madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; }; mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; }; madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; @@ -6660,7 +6835,7 @@ in with self; { magic = derive2 { name="magic"; version="1.5-6"; sha256="1399w1zhz79nj8cdhslybncd9h6rylfhb548nv22ip0dxxdkyv0v"; depends=[abind]; }; magicaxis = derive2 { name="magicaxis"; version="2.0.0"; sha256="0f531qlwkp043qgwv58x1b07a3v03vnz0r20hlqqsx8z16jqw6i4"; depends=[celestial mapproj MASS plotrix sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; - magick = derive2 { name="magick"; version="0.3"; sha256="06ljr1avgp0ki9d15rrlcdz6n0m8v5rx07aq3xqa5zmkqgm6s0a5"; depends=[curl Rcpp]; }; + magick = derive2 { name="magick"; version="0.4"; sha256="15w904zqbdm8051xqg1s83pmimkan0wg7z5vdzm5h96mjsqf6wap"; depends=[curl Rcpp]; }; magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; @@ -6682,30 +6857,32 @@ in with self; { mapmisc = derive2 { name="mapmisc"; version="1.5.0"; sha256="1f6yjr3a26nm482ldnx8rzjhc0d9hlrpd48japm0sihxvmsz0pv3"; depends=[raster sp]; }; mapplots = derive2 { name="mapplots"; version="1.5"; sha256="09sk78a0p8hlwhk3w2dwvpb0a6p7fqdxyskvz32p1lcav7y3jfrb"; depends=[]; }; mapproj = derive2 { name="mapproj"; version="1.2-4"; sha256="1sywwzdikpnkzygb2jx9c67sgrykgbkm39dkf45clz3yylsib2ng"; depends=[maps]; }; - mapr = derive2 { name="mapr"; version="0.3.0"; sha256="0xgbc4zpjdd6lncccdd85ar909z7bv8yqrv5s1xrp2j2j1gv97z1"; depends=[ggplot2 gistr httr leaflet RColorBrewer rworldmap sp spocc]; }; + mapr = derive2 { name="mapr"; version="0.3.4"; sha256="14f7zfzxb1h935bbybj2l2n4a62cnq0wvgmc09in0fvnl75jl971"; depends=[ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; }; maps = derive2 { name="maps"; version="3.1.1"; sha256="0ajdrd4z66jpdjqdgk6vz89x7gh1isidgr8qkg0fq6cmrvjn08lp"; depends=[]; }; - maptools = derive2 { name="maptools"; version="0.9-1"; sha256="0ma1diflrkq9wa6qjli6ncjn17b3rqrgjwq984dx5djy9f5bjf3f"; depends=[foreign lattice sp]; }; + maptools = derive2 { name="maptools"; version="0.9-2"; sha256="075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="1.2.0"; sha256="0785jzs3kr6rcxz5p1mwpz7maq3z2mwxskl6whyzizbrkmxj2ikw"; depends=[brew data_table gdalUtils htmltools htmlwidgets lattice latticeExtra leaflet png raster Rcpp rgdal satellite scales sp viridisLite webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="1.4"; sha256="1wfhm33k2j5yim56sg0wd02ypfhlp9fc138vmdsdjp6nh4y23hnj"; depends=[]; }; + marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.6"; sha256="024gbrdby6h722j58wl8xn8027sanlpnz1l3hhxnllwzbz3mbdz4"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2"; sha256="0j08zzcrj8nqsargi6xi50gy9pl4smmsp4b7ywlga7r1ga38g82r"; depends=[statmod survival]; }; + margins = derive2 { name="margins"; version="0.3.0"; sha256="0i6c39acyyvxsx2lkza2afjyhpdlb9fx0zssr24g0xdk3f7c2dc2"; depends=[MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; marinespeed = derive2 { name="marinespeed"; version="0.1.0"; sha256="1r9bpggb88px8149dsga3xmkjhjq6ybs6a5kp60qz28iyr183mar"; depends=[bit geosphere sp]; }; markdown = derive2 { name="markdown"; version="0.7.7"; sha256="00j1hlib3il50azs2vlcyhi0bjpx1r50mxr9w9dl5g1bwjjc71hb"; depends=[mime]; }; marked = derive2 { name="marked"; version="1.1.13"; sha256="0zgfd7fdcrvvqnlgzarly16zjnipshxsa1g3j9jqc5kbqvh7fnh2"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; markmyassignment = derive2 { name="markmyassignment"; version="0.6.1"; sha256="167q4fwn2ssqn588wx3ig923rcr74m95na1z1wdfy67jczsk492l"; depends=[codetools httr lazyeval testthat yaml]; }; markophylo = derive2 { name="markophylo"; version="1.0.4"; sha256="12np5rg59wjyh1mfhhfh115ziciba973fjvbrhn4qzdnry1mwbdb"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; - markovchain = derive2 { name="markovchain"; version="0.6.6"; sha256="165zh185fjgr61ah4y763816fai6g6phj64afdlklbsj5an1mvr9"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; + markovchain = derive2 { name="markovchain"; version="0.6.9"; sha256="1wvwxczz51y0cr9f04myw0p8flhh2y68fxfy2cisp8hzdxk5a3xc"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="0.9.6"; sha256="1b0mpygk18ri0xs9f56j2g7zmka7krnw7fmh9m9xisbvq2g23g92"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; }; mason = derive2 { name="mason"; version="0.2.5"; sha256="1v2gja8kbwzx5c8y8gchh4rwwprv99ad0nhgb0hnfgjnqsbdmdv7"; depends=[assertive broom dplyr lazyeval magrittr tidyr]; }; matR = derive2 { name="matR"; version="0.9"; sha256="0lih3g2z6rxykprl3s529xcf466bpzpsv4l20dkgx1fgfslfcl2p"; depends=[BIOM_utils MGRASTer]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.5"; sha256="186ndliw32aqbcpacd1hjsab7dm38sxmgh77iyp203swif1iv6jn"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; - matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-2"; sha256="1kajwh81l4h30szdpg8y5178cswgp89zifh5nsw5480k6n2g6asa"; depends=[partitions Rcpp RcppArmadillo RcppProgress rJava]; }; + matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-3"; sha256="0jpx4k82h0mdhbwb1jc8g18qjsr9448m6d69zii99bdinsd637rv"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.2.1"; sha256="09vx3yqaq0pq341v8rm2hjxx0aza0bnh9iffrygwbhls7fi7kn7y"; depends=[Rcpp RcppArmadillo]; }; matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; }; mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; }; @@ -6716,7 +6893,7 @@ in with self; { matlib = derive2 { name="matlib"; version="0.8.1"; sha256="080mbmr1lb5ha5ql40hv0idcnnbyaai46c42z756kdyq9pdzcabf"; depends=[car rgl]; }; matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; }; matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; - matrixStats = derive2 { name="matrixStats"; version="0.51.0"; sha256="0bsalx605kgb9nl7mfnq1qinkyd9s97p8plymsyfja1gmcnjrcpj"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="0.52.2"; sha256="19fjf19cr0p3j9pj17myz39zpi5bh7ci72db3la9my09n6k6mnir"; depends=[]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; }; matrixpls = derive2 { name="matrixpls"; version="1.0.4"; sha256="1pysvf224wpkawdvz3y38cy8s3lg34s37ip6ybzfxm4vanzj1xjc"; depends=[assertive lavaan MASS matrixcalc psych]; }; maxLik = derive2 { name="maxLik"; version="1.3-4"; sha256="0jjb5kc7dvx940ybg7b7z9di79v75zm2xlb0kj2y7rmi45vvh6hq"; depends=[miscTools sandwich]; }; @@ -6725,7 +6902,7 @@ in with self; { maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; }; maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; }; maxstat = derive2 { name="maxstat"; version="0.7-25"; sha256="114z1rwxwvk05ijjhdppzm148n1h192fp0w12ky10zkrhf6kphbg"; depends=[exactRankTests mvtnorm]; }; - mazeGen = derive2 { name="mazeGen"; version="0.1.1"; sha256="1vqhcypxbw15prc77i1jl8vnb1q3lr9bb9s6ql2pcadv3i02ybnb"; depends=[igraph]; }; + mazeGen = derive2 { name="mazeGen"; version="0.1.2"; sha256="05lsb7ldk6nzmfaklbvkcb4n5sfnimgcv5vgilblw5awzhavj5vm"; depends=[igraph]; }; mbbefd = derive2 { name="mbbefd"; version="0.8.8"; sha256="17f2y4xi5fxc6mms519xjb9qg94qqlxv0mhdbhjyyfg3x6bj7bsq"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; }; mbest = derive2 { name="mbest"; version="0.5"; sha256="0l6vmcqkd2b0b90jmsswrhbdmhq2x92g7sr2l99rp7xp1cxdq02w"; depends=[bigmemory foreach lme4 logging nlme]; }; @@ -6733,7 +6910,7 @@ in with self; { mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; }; mboost = derive2 { name="mboost"; version="2.7-0"; sha256="1gzn80ixvdv560zl2r6gzcpbjcvhnkmdpis1l4gvidd7amrfzfp2"; depends=[lattice Matrix nnls party quadprog stabs survival]; }; mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; }; - mc2d = derive2 { name="mc2d"; version="0.1-17"; sha256="07gxh9lpkrxvq7m1vbh8k4l4ka7wqf40sbj1zv99avlsvh9aicya"; depends=[mvtnorm]; }; + mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; }; mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcIRT = derive2 { name="mcIRT"; version="0.41"; sha256="0pbwydl4zjzwdlpzwpqm4xhq716zgq9s7bvcbrqp6q0jkba9zjnw"; depends=[Rcpp RcppArmadillo]; }; mcPAFit = derive2 { name="mcPAFit"; version="0.1.3"; sha256="0yg79sry8jdp17mbdnfaj2phg3vdxs11si7hmfh5csfk7maax8v6"; depends=[PAFit RColorBrewer Rcpp]; }; @@ -6749,8 +6926,8 @@ in with self; { mclcar = derive2 { name="mclcar"; version="0.1-8"; sha256="1hrjfjbsxh8g6bw2cfxciry8hn9xxfg4bww5p1sjq98v8bsqcx23"; depends=[fields maxLik nleqslv rsm spam spdep]; }; mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; mclogit = derive2 { name="mclogit"; version="0.4.4"; sha256="1nnzds9md3drcgblzpbg39a53v4npdbi0xp3xgw8xqfyy37nia59"; depends=[Matrix memisc]; }; - mclust = derive2 { name="mclust"; version="5.2.2"; sha256="19cbg7p5h2b6h9mvcx9rjppyd3awma18ymaljakbnclpvhwbqpwd"; depends=[]; }; - mcmc = derive2 { name="mcmc"; version="0.9-4"; sha256="1ws80j64df8inzz0a6k8r51wf44zwjnpvp591pxwah2jbi6j6kna"; depends=[]; }; + mclust = derive2 { name="mclust"; version="5.2.3"; sha256="0045msdw1xndfmlylbnm1ss716iiqzqwj454a97gmcq5kph86qzz"; depends=[]; }; + mcmc = derive2 { name="mcmc"; version="0.9-5"; sha256="1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6"; depends=[]; }; mcmcplots = derive2 { name="mcmcplots"; version="0.4.2"; sha256="0ws2la6ln016l98c1rzf137jzhzx82l4c49p19yihrmrpfrhr26l"; depends=[coda colorspace denstrip sfsmisc]; }; mcmcse = derive2 { name="mcmcse"; version="1.2-1"; sha256="18k2cp5hpr3lzv9yva5qc379iq9aysnl872dv8jidwrj4iy2xccy"; depends=[ellipse Rcpp RcppArmadillo]; }; mco = derive2 { name="mco"; version="1.0-15.1"; sha256="14y10zprpiflqsv5c979fsc2brgxay69kcwm7y7s3gziq74fn4rw"; depends=[]; }; @@ -6767,7 +6944,7 @@ in with self; { mdhglm = derive2 { name="mdhglm"; version="1.6"; sha256="1lvckais4c3pbf6zrpfkdlyqhcg4jaw11n00622h9ks413fl788v"; depends=[boot Matrix mvtnorm numDeriv]; }; mdmb = derive2 { name="mdmb"; version="0.2-0"; sha256="13pkz0mjvd5gph1fpz3cd2yn5mb0lsvyjr7xr9bbikh11jqx80wb"; depends=[CDM coda miceadds sirt TAM]; }; mdpeer = derive2 { name="mdpeer"; version="0.1.0"; sha256="0z84xm189v99frnayp4vr0qr7fr495sai5mjvyqpv9cbhvqn3xkr"; depends=[ggplot2 glmgraph glmnet magic MASS nlme nloptr reshape2 scalreg]; }; - mdsOpt = derive2 { name="mdsOpt"; version="0.1-1"; sha256="1fz80nc4xxd8q9zdfa38z159n35jf9y90ys39rgdzmc7ahqpkvh1"; depends=[clusterSim smacof]; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.1-2"; sha256="0afdlaw2gxi50psglgqb1k01ccv70x180dkwm78dzw6sjlz6fcjy"; depends=[clusterSim smacof]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.1.3"; sha256="19ryy7cm2ia3xi54r0176n72y7w35dqml0l7ysi6qd8zy4yavkvx"; depends=[babynames DBI dplyr ggplot2 mosaic RMySQL]; }; @@ -6781,10 +6958,9 @@ in with self; { medflex = derive2 { name="medflex"; version="0.6-1"; sha256="0i3808qh4ryqcgx5rl60d4xdy25wzx008abijg5fcirsrdly7j91"; depends=[boot car Matrix multcomp sandwich]; }; mediation = derive2 { name="mediation"; version="4.4.5"; sha256="0jq0gg5ydqvy0vv8m7xk609ljw7p31jppgwgin3y3mvd32wapgk3"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; }; medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; }; - medicare = derive2 { name="medicare"; version="0.2.0"; sha256="1z0ch704cw43hsp97j9mf6s0w9rpiv76swk7xlbiqcmyv7wivrhy"; depends=[]; }; + medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; }; mefa = derive2 { name="mefa"; version="3.2-7"; sha256="1qrf6d3y38q7yy6bg3bxg7514d9paz1f8y6sr7lbksi30qn92fmj"; depends=[]; }; mefa4 = derive2 { name="mefa4"; version="0.3-4"; sha256="11zg30i2fkxdv8fn7jilbmm7k5g0ls8f91bpq6qiwiagwg8gj2lh"; depends=[Matrix pbapply]; }; - megaptera = derive2 { name="megaptera"; version="1.0-0"; sha256="1fczhdydqca1jcdc315kwrhxcjisxfq23l4sm7m2011k5nrjmv37"; depends=[ape ips RPostgreSQL seqinr snowfall XML]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; }; mem = derive2 { name="mem"; version="1.4"; sha256="1d3fgllh7fhlfz3rz2jm31r8vn7msz4na4762iaw161qp2j101db"; depends=[boot sm]; }; @@ -6798,7 +6974,7 @@ in with self; { merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; metRology = derive2 { name="metRology"; version="0.9-23-2"; sha256="16hdcrqa15mf2cfgl6r9awd0y2kwrdbld8sxqmwnchlvdbm6gib4"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="0.0.1"; sha256="1mhdgrh4nc14avfsf1f4rpq8qxkgsd9v65dvhvqq7swykia9vsfv"; depends=[geosphere ggmap leaflet plotly RColorBrewer rjson]; }; - meta = derive2 { name="meta"; version="4.7-1"; sha256="1b5g0rd5bllz3g4if7j5crgavz2a5mky5gchfpxyp0yl2jar4br3"; depends=[]; }; + meta = derive2 { name="meta"; version="4.8-1"; sha256="1zk1c9vrx23qgbhir6bzi26fa3gfky4gyhq7f0s8sk96h6g568kj"; depends=[]; }; meta4diag = derive2 { name="meta4diag"; version="2.0.5"; sha256="0hwzwyzr23sqlqpx2372419167wad1q7spyzmcxhf4f5hmqv14c9"; depends=[caTools shiny shinyBS sp]; }; metaLik = derive2 { name="metaLik"; version="0.42.0"; sha256="1rk5mwgmgnqq2hrzbh936hzw3aa815l12r1a1qywap5ggmmyhszl"; depends=[]; }; metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; @@ -6807,34 +6983,35 @@ in with self; { metaSEM = derive2 { name="metaSEM"; version="0.9.12"; sha256="1lmsqpfb1yxdlwb2qhcsm7111w25qlz6794i2pwf5wmaixwyw0nj"; depends=[ellipse MASS Matrix OpenMx]; }; metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; }; metacoder = derive2 { name="metacoder"; version="0.1.2"; sha256="0srrmmn86jpxdx463qngd1fj8ssnly18kb74csa9957n1lr0l9xf"; depends=[ape dplyr ggplot2 igraph lazyeval magrittr RColorBrewer RCurl readr reshape reshape2 scales seqinr stringr taxize traits zoo]; }; - metacom = derive2 { name="metacom"; version="1.4.5"; sha256="1c79sm0b00mm723g3h9llxlk33zk6f9yv6z10jx1la6kk1cgs7a2"; depends=[vegan]; }; + metacom = derive2 { name="metacom"; version="1.4.6"; sha256="0qqjfy5cqfpyd5906d49rkc67zrj8rp28zk2ii49dwddi2nhj4yy"; depends=[vegan]; }; metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; }; metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; metafor = derive2 { name="metafor"; version="1.9-9"; sha256="14287z65ffm013787wfnyb9842zcv63i97g445xa4j8075p8sp7p"; depends=[Matrix]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; - metagear = derive2 { name="metagear"; version="0.3"; sha256="0xhaqpyhix7akk4vmb1zxi69g1j7c2h8d5fk547qfx7nqaiwzh53"; depends=[EBImage gWidgets gWidgetsRGtk2 hexView MASS Matrix metafor RCurl stringr]; }; + metagear = derive2 { name="metagear"; version="0.4"; sha256="0ww1j34600y99wyanj9ffg1019xqshb9c32wiqnsblyw8pq4va5f"; depends=[EBImage gWidgets gWidgetsRGtk2 hexView MASS Matrix metafor RCurl stringr]; }; metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; }; metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; }; - metamisc = derive2 { name="metamisc"; version="0.1.1"; sha256="1cvlsix3b857xdw6anqhqsrfwxpnf4rbzg4ybf6aw7vcdc05zgwd"; depends=[bbmle coda ellipse mvtnorm rjags]; }; + metamisc = derive2 { name="metamisc"; version="0.1.4"; sha256="0v2yrdvj6lm4fhfpxd8fnnrvbdph8cb1v27yhp4w8sf1d6mq2lwc"; depends=[bbmle ellipse lme4 metafor mvtnorm survival]; }; metansue = derive2 { name="metansue"; version="1.2"; sha256="0gcysmi4lvl4496vygc7v58pd4sgz013mr8nqb870s861jwjj31v"; depends=[]; }; metap = derive2 { name="metap"; version="0.8"; sha256="06ny9zkilawdy0s8yiwhnygs3yppw89bbyf76zgdavykbzscz5lh"; depends=[lattice]; }; + metaplot = derive2 { name="metaplot"; version="0.1.1"; sha256="00pc7ljhhlcng4dq57a7a5ppfswid1lnnxza2yjrylf6hsh37ids"; depends=[dplyr encode fold lattice lazyeval magrittr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; metaplus = derive2 { name="metaplus"; version="0.7-9"; sha256="1hrczccszx9jcgifwg6wsigsbm8ih4xjr00knb0rxyygijk38c82"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; }; metasens = derive2 { name="metasens"; version="0.3-1"; sha256="0nxvllfa2x6v2hpgind5xr0i40wi7cpdd18lwgy9s4jpgbn0n17p"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-4"; sha256="0bz6gg2n4ffkr144jxk27y24xpqhp8awr09wkaijmv8902qx6qah"; depends=[]; }; - metavcov = derive2 { name="metavcov"; version="1.0"; sha256="183xrrdz8agwcxgn8i4jg28f8gqskim9wcz193524fjhcm4bklxr"; depends=[corpcor]; }; + metavcov = derive2 { name="metavcov"; version="1.1"; sha256="1x87knvypkfg0x223aiak7fy7zdlfn74crmvnqzhxf2vmxljnvnh"; depends=[corpcor]; }; metaviz = derive2 { name="metaviz"; version="0.1.0"; sha256="1cl44dvd625sfz906cggrj092bxy35vsiglalsay9frsi440d82p"; depends=[ggplot2 plyr RColorBrewer]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; - meteoForecast = derive2 { name="meteoForecast"; version="0.50"; sha256="19yzfvaj4h5l70j54nlivq5dvp5psp43y5d2l978ai6pwvmi291a"; depends=[ncdf4 raster sp XML zoo]; }; + meteoForecast = derive2 { name="meteoForecast"; version="0.51"; sha256="1k5m561b6hpqvzrg5l16523ig1rxcsi4s172jmya039cwyk8mqfp"; depends=[ncdf4 raster sp XML zoo]; }; meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; - meteoland = derive2 { name="meteoland"; version="0.5.2"; sha256="17sfi14q5cp74cmlvhbyg6xlpiw9ssqc4kp48r41allk38dfk1zd"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; + meteoland = derive2 { name="meteoland"; version="0.5.9"; sha256="1kjnwl1mhp5zwfgfngc48388xdppv96b9clnk7r9l714nk58mq10"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; }; metricTester = derive2 { name="metricTester"; version="1.3.2"; sha256="1n64l69w5skbymizm5ghq50gwhpasyk9zmywib6hkd9k5ijgayv5"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; - mets = derive2 { name="mets"; version="1.2.1"; sha256="0wmycy87v0hry7vzyz3vjpjq8cx7nraigihwch04nfhpg6x4zal8"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; + mets = derive2 { name="mets"; version="1.2.2"; sha256="1rdljq4069n7i05sqi75bcp1zpq69m13vf1nrjfg568cpwmr4m37"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; }; mev = derive2 { name="mev"; version="1.10"; sha256="0kidgghwjc81rx2vb8y1iiwvlfxafv7r11n3zz1gb7705w6ynw1m"; depends=[boot evd gmm ismev nleqslv numDeriv Rcpp RcppArmadillo rootSolve]; }; mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; - mexhaz = derive2 { name="mexhaz"; version="1.1"; sha256="168a8b3y17nh2dalqanph384laf2awv3jdk8dm9cl5jbkh7ah4lb"; depends=[MASS statmod survival]; }; + mexhaz = derive2 { name="mexhaz"; version="1.3"; sha256="1sqys7k6hrs892b50cn54q2k3vnlmgz1467rdwaksailhhizpbc5"; depends=[MASS numDeriv statmod survival]; }; mfe = derive2 { name="mfe"; version="0.1.0"; sha256="06x6csf3pr1vdmmimg6f7iffrivj8wcdfafvld7nrzbkl09cbfbn"; depends=[C50 class e1071 infotheo MASS rpart]; }; mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; }; mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; }; @@ -6854,13 +7031,15 @@ in with self; { miCoPTCM = derive2 { name="miCoPTCM"; version="1.0"; sha256="1lmf6zahfp59ylhdp2cbr7y3vayhim72zazimg4qfld4r9d6kygc"; depends=[distr MASS nleqslv survival]; }; miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; }; miRtest = derive2 { name="miRtest"; version="1.8"; sha256="0i66s1sz7vf8p8ihfrxmag7wbkw8mlkldcp1w2figlzyhs74c85p"; depends=[corpcor GlobalAncova globaltest limma MASS RepeatedHighDim]; }; - micEcon = derive2 { name="micEcon"; version="0.6-12"; sha256="1kxhr3qqgswq8glrjfcjz0hyb163lwf303yhwlgrwjciqgp5dq17"; depends=[miscTools]; }; - micEconAids = derive2 { name="micEconAids"; version="0.6-16"; sha256="07hsabrlkwpdaalh0b7izraz2q5dlxn373ccijc5c4zsrkgk7kij"; depends=[lmtest micEcon miscTools systemfit]; }; + micEcon = derive2 { name="micEcon"; version="0.6-14"; sha256="1d3cdg36ighyhly5by9gl6lxkdvx2agb5cv2mf77pwwd7rpq35h3"; depends=[miscTools plm]; }; + micEconAids = derive2 { name="micEconAids"; version="0.6-18"; sha256="0s2gkf6widdnxqqb1xjqdvji8vhdz5a4q05clbbbyq1h409q7qvl"; depends=[lmtest micEcon miscTools systemfit]; }; micEconCES = derive2 { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; }; + micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; }; micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; }; mice = derive2 { name="mice"; version="2.30"; sha256="1r673x51vs3w7kz4bkp2rih4445hcmajw86gjwz7m2piajwvs817"; depends=[lattice MASS nnet Rcpp rpart survival]; }; - miceadds = derive2 { name="miceadds"; version="2.3-0"; sha256="0jmj5zrggbyp5yaqn96naicfm6ajir3ybs9j1028vxdj2wyapz13"; depends=[blme car CDM foreign grouped lme4 MASS MCMCglmm mice mitools multiwayvcov mvtnorm Rcpp RcppArmadillo sirt sjmisc TAM]; }; + miceadds = derive2 { name="miceadds"; version="2.4-12"; sha256="0bav0jbawy1jnr7gms2mcr651g9azrkx2870slnzf75bjrlm054g"; depends=[blme car CDM foreign grouped lme4 MASS MCMCglmm mice mitools multiwayvcov mvtnorm Rcpp RcppArmadillo sirt sjmisc TAM]; }; micompr = derive2 { name="micompr"; version="1.0.1"; sha256="1380x9jp5lpc6n6bjvhmkwlb59ch7q59r3bc6f0i5j2kpaairbc4"; depends=[]; }; + microPop = derive2 { name="microPop"; version="1.1"; sha256="1ib4jiyrn4kb0llyx95byd1bi34hy1bxi9w1796c6wpa49dbxvpp"; depends=[deSolve]; }; microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; }; microbenchmark = derive2 { name="microbenchmark"; version="1.4-2.1"; sha256="0qn5r1a6qidghcisc2hpbdmj62pnixc3zz6p4ipk8mvakf0hdsvg"; depends=[ggplot2]; }; microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; }; @@ -6876,7 +7055,6 @@ in with self; { migest = derive2 { name="migest"; version="1.7.3"; sha256="1g49b4fa2974w8alb97k06k3zi49q66n16cvcbqdaj9j21c9qfmy"; depends=[]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; - milonga = derive2 { name="milonga"; version="1.0"; sha256="1pkmh1mabqag38xzw2s86x9c6pr83wlmh4f45s7km5g0j1zllrd9"; depends=[MCMCpack]; }; milr = derive2 { name="milr"; version="0.2.0"; sha256="1fhpnibs99045fcphydgdh7mdbpclbskbb74zlvhpbr6q8hh70hd"; depends=[assertthat glmnet numDeriv pipeR purrr Rcpp RcppArmadillo]; }; mime = derive2 { name="mime"; version="0.5"; sha256="0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"; depends=[]; }; minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; }; @@ -6892,7 +7070,7 @@ in with self; { minpack_lm = derive2 { name="minpack.lm"; version="1.2-1"; sha256="18ym2pdql5vzngc7q5gn66d153hrfrnd8ilv8yh6vd7j7sx7vjql"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; }; - minval = derive2 { name="minval"; version="0.5"; sha256="1pbcfcaysaicppkzvnllvvx2jykc17nk3331n0rl41x56jxcjsgd"; depends=[gdata XML]; }; + minval = derive2 { name="minval"; version="0.6-1"; sha256="0m907wff5mk533p5w2q067ji86dh7xskv43glcfbiq8bhbg4qw5h"; depends=[]; }; minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.1"; sha256="18cfv8s38cd0g1wc5pry6a4m2ykqflkxhqbqnjbjvmr42bj3r6sp"; depends=[cmm numDeriv Rsolnp]; }; mirt = derive2 { name="mirt"; version="1.23"; sha256="13dx1ir09lmvapjv6igya71w5yp6r41yzpcdnbdk5jqyyqidnian"; depends=[GPArotation lattice mgcv numDeriv Rcpp RcppArmadillo sfsmisc]; }; @@ -6902,19 +7080,19 @@ in with self; { miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; }; miscTools = derive2 { name="miscTools"; version="0.6-22"; sha256="1sngkl5rwg1vp2xx9a5g2nz2nhwxwv7ni21ww7hyjc8x5mhb42yh"; depends=[]; }; misclassGLM = derive2 { name="misclassGLM"; version="0.2.0"; sha256="1dz36q2gl0q8d0s2rxn28b8ykw31wcdxf91s7ypmjggfdj64i8br"; depends=[bigmemory foreach MASS Matrix mlogit numDeriv ucminf]; }; - miscor = derive2 { name="miscor"; version="0.1-0"; sha256="0kgdsqcqdfi7976qc2f2r6z68z6znrgwgcr801cfkqql8s0wksfj"; depends=[PoisNonNor]; }; + miscor = derive2 { name="miscor"; version="0.1-1"; sha256="1vn0q0i2f1szjywddb7h7krpbf0qch6gmbzs03m4zb03xd70983b"; depends=[]; }; miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missDeaths = derive2 { name="missDeaths"; version="2.2"; sha256="0gkzq7jpqkfcvc40i0xdjxmwmn1mpd7p4hik4fqz22q3pvmhmmwn"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; - missMDA = derive2 { name="missMDA"; version="1.10"; sha256="1wqb5badqcs6yj2c7llbhbssdzg0irjzfcjasfrq1zg0lk82zafj"; depends=[FactoMineR mice mvtnorm]; }; + missMDA = derive2 { name="missMDA"; version="1.11"; sha256="185ia5zg5gdrkjpj5sql46lz5svw77wjy9zplpqhrmgx43fv0w0i"; depends=[FactoMineR mice mvtnorm]; }; mistat = derive2 { name="mistat"; version="1.0-4"; sha256="0gzng0kl3handy3k7g62c4sdcf9l6x0b69jxmfrwfd4297f57n9n"; depends=[]; }; mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; }; - mitml = derive2 { name="mitml"; version="0.3-4"; sha256="0lwy87f0v43i6fpbhl85vg9x5mvll8bllcm6q2qj06nk7yy25573"; depends=[haven jomo pan]; }; + mitml = derive2 { name="mitml"; version="0.3-5"; sha256="1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; }; mix = derive2 { name="mix"; version="1.0-9"; sha256="08729y6ih3yixcc4a6m8fszg6pjc0s02iq47339b9gj16p82b74z"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="4.4"; sha256="0aj1x80kxwksn7as6lfncl6ar218hnbcs8vbxwiqp1lh4il74iiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAK = derive2 { name="mixAK"; version="5.0"; sha256="1lb3ivcl64vny21gifll6sc2yaf970mvb1hwlch1k49125ybxz5q"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; mixOmics = derive2 { name="mixOmics"; version="6.1.2"; sha256="1f5053xpp674g2dn54rl1yz3knb5i1824dj5v213y6i82m2vygc6"; depends=[corpcor dplyr ellipse ggplot2 igraph lattice MASS plyr RColorBrewer reshape2 rgl tidyr]; }; mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; }; mixR = derive2 { name="mixR"; version="0.1.0"; sha256="16rl1ggavs1qfq4i3jm85acd0w2zbiacnvnnim3vi3kqa9i09byy"; depends=[ggplot2 Rcpp]; }; @@ -6933,7 +7111,7 @@ in with self; { mixsep = derive2 { name="mixsep"; version="0.2.1-2"; sha256="1ywwag02wbx3pkd7h0j9aab44bdmwsaaz0p2pcqn1fs3cpw35wa2"; depends=[MASS RODBC tcltk2]; }; mixsmsn = derive2 { name="mixsmsn"; version="1.1-2"; sha256="02hincq7bflmyvdahjmkcdpr6vwxjw5hrbvld38riwv2kw4wmn4l"; depends=[mvtnorm]; }; mixtNB = derive2 { name="mixtNB"; version="1.0"; sha256="0lqbm1yl54zfs0xcmf3f2vcg78rsqyzlgvpydhmhg7x6dkissb22"; depends=[]; }; - mixtools = derive2 { name="mixtools"; version="1.0.4"; sha256="133rr17ywmlhsc6457hs8qxi8ng443ql9ashxpwc8875gjhv1x32"; depends=[boot MASS segmented]; }; + mixtools = derive2 { name="mixtools"; version="1.1.0"; sha256="13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"; depends=[MASS segmented survival]; }; mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; }; mixture = derive2 { name="mixture"; version="1.4"; sha256="0k9pzcgfjyp0rmcma26kr2n8rcwmijznmdpvqidgl3jay20c87ca"; depends=[]; }; mizer = derive2 { name="mizer"; version="0.2"; sha256="0cpal9lrjbvc923h499hbv4pqw3yjd4jvvhgayxgkak2lz2jzmcz"; depends=[ggplot2 plyr reshape2]; }; @@ -6942,7 +7120,7 @@ in with self; { mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; }; mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; }; - mlVAR = derive2 { name="mlVAR"; version="0.3.2"; sha256="07jxggh5qds0b7by61m1xiyx3lxffpgzl3knk97q8fafw46dg1r4"; depends=[abind arm clusterGeneration corpcor dplyr lme4 mvtnorm plyr qgraph]; }; + mlVAR = derive2 { name="mlVAR"; version="0.3.3"; sha256="1psw3kcfq23c4i1qq4vfgjwd1lgjhhhly6bwz37ky5l753lvl9yf"; depends=[abind arm clusterGeneration corpcor dplyr lme4 mvtnorm plyr qgraph]; }; mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.3.22"; sha256="0q5dpqx6zapawjjq8rqk112w5qsk7r6sc90y63yvllk9yhdgygyw"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.3.15"; sha256="1xivwmv6hvl026c5ymc23fr36sk797dxn2wa9lp20dgh5s0cq10n"; depends=[]; }; @@ -6958,13 +7136,14 @@ in with self; { mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; mlogit = derive2 { name="mlogit"; version="0.2-4"; sha256="15ndly7i56k8blgvpn15ixxnqx9yvbci7n3mb3hm9mnrxwh5v7sx"; depends=[Formula lmtest MASS maxLik statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; - mlr = derive2 { name="mlr"; version="2.10"; sha256="1brylz7x10wyi0k4cdh9qkjv73yz8g67ib8flzw9dcd9i15ppgbv"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival]; }; + mlr = derive2 { name="mlr"; version="2.11"; sha256="1fs62xzxgk75k3b4wkxh2qkij03m5i1bbmacgffwq4xak3mr64ma"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival]; }; + mlrMBO = derive2 { name="mlrMBO"; version="1.0.0"; sha256="1id99p3dxs6z9wq8xwk16xg99kwv4nw0mdyfammin4nnwwbkggsd"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; }; - mlt = derive2 { name="mlt"; version="0.1-2"; sha256="0z7gvg31by1xbw6yqxfs2hvfw7l0392gsrislah05bjay482b01q"; depends=[basefun BB numDeriv quadprog sandwich variables]; }; - mlt_docreg = derive2 { name="mlt.docreg"; version="0.1-4"; sha256="15gc27rgw728f005wriik3dixw4f38krjg0zy0fx5macij3fbc7z"; depends=[mlt numDeriv]; }; + mlt = derive2 { name="mlt"; version="0.1-3"; sha256="0195v5hl3vljc4vwybkrw9z43pfh3n1awixryf5ysv0xc6ksm7bi"; depends=[basefun BB numDeriv quadprog sandwich variables]; }; + mlt_docreg = derive2 { name="mlt.docreg"; version="0.1-5"; sha256="0clgrrcdi0ij23nn7pzbv901paxy092pbr3g987c2ij22sh32l7n"; depends=[mlt numDeriv]; }; mltools = derive2 { name="mltools"; version="0.2.0"; sha256="0q7k4gkvswlkvjjvjpaw72cx7wjb26yjpap1yqbdq9b3gq32w02j"; depends=[data_table Matrix]; }; mlxR = derive2 { name="mlxR"; version="3.1.0"; sha256="1xdv7s6li1kwn8m4dnhz18rhmhv13y128npcfmfka646l0p5g1r9"; depends=[ggplot2 Rcpp XML]; }; - mma = derive2 { name="mma"; version="4.0-0"; sha256="1dj9z9brmqrfl4ah27cjwksh16b6nww033wwf741hiadr5jl13pn"; depends=[car gbm gplots survival]; }; + mma = derive2 { name="mma"; version="5.0-0"; sha256="1k65ar8nhv7ya254ap94hbx91siqcwxlg3yac85xxxs9rr6b27bf"; depends=[car doParallel foreach gbm gplots survival]; }; mmand = derive2 { name="mmand"; version="1.4.1"; sha256="1gkn0dhfffsa2bsrm6wy21l1w17x6h3znfn4a8s8yvgggwnq4030"; depends=[Rcpp reportr]; }; mmap = derive2 { name="mmap"; version="0.6-12"; sha256="12ql03wzwj23h8lwd07rln6id44mfrgf9wcxn58y09wn3ky1rm6a"; depends=[]; }; mmc = derive2 { name="mmc"; version="0.0.3"; sha256="03nhfhiiadga8mcp33kj20g33v9n5i62fdqgi20h5p80g849k719"; depends=[MASS survival]; }; @@ -6972,15 +7151,15 @@ in with self; { mmds = derive2 { name="mmds"; version="1.1"; sha256="0f5qzkfhi7vg8vsd8r41idmbwrrgc7qzfnp81adms2yzrza17wrw"; depends=[]; }; mme = derive2 { name="mme"; version="0.1-5"; sha256="07k1xagwpyzsrlc00y9xlaxcpwdhz55v567i7fzvqa96ical8nlf"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.2"; sha256="1kcfq5y2fzsrbjyvh6dfp734ly7alj9vrjikzadlz33s7wjanh79"; depends=[]; }; - mmeta = derive2 { name="mmeta"; version="2.2"; sha256="06zkazi97f3il2vlx4f8c7zz4kxs9ylhscd06j31h504c1w96ddf"; depends=[aod HI]; }; + mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; }; mmm = derive2 { name="mmm"; version="1.4"; sha256="1nydian004nldqhyw3x15w6qfml2gkjc0x8ii54faz563byjv3d8"; depends=[gee]; }; mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; - mmod = derive2 { name="mmod"; version="1.3.2"; sha256="1yq3cvkfsqmiiqqzyisfiyzfcd2jdp7xv19rydpqaq4qb6322ljg"; depends=[adegenet pegas]; }; - mmpf = derive2 { name="mmpf"; version="0.0.2"; sha256="0cw45rfrcb2f3ghfkkxm3gzdms7mn7rl4gmqnr4jbxyqca263aza"; depends=[checkmate data_table]; }; + mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; + mmpf = derive2 { name="mmpf"; version="0.0.3"; sha256="0mwsnhz1f62l8msisz9m1aln7w24rg9844bxh07g2y7sa29ls1lp"; depends=[checkmate data_table]; }; mmpp = derive2 { name="mmpp"; version="0.4"; sha256="120ciyd9c6zwbdvzcpasb1476d0i9h28a1a5c99z3zar8lpp184p"; depends=[]; }; mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; }; mmtfa = derive2 { name="mmtfa"; version="0.1"; sha256="113bpcb05i78y78byrdn9j45dfcar7q8z7qmlid8cl6b8cjv1vfz"; depends=[matrixStats mvnfast]; }; - mnis = derive2 { name="mnis"; version="0.2.1"; sha256="0jacjwz68667k5066v6lv1dhw946mjnvff53j2l8vdsxzm34hbc6"; depends=[httr jsonlite plyr]; }; + mnis = derive2 { name="mnis"; version="0.2.3"; sha256="03ka16wmgcgzplp1gj76irbg3j7302jd1jw71dlghngx6ic337yh"; depends=[dplyr httr jsonlite Rcpp tibble]; }; mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; }; mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; }; mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; }; @@ -6997,24 +7176,25 @@ in with self; { modelr = derive2 { name="modelr"; version="0.1.0"; sha256="1vrhszix1kq5p02i044vjlbpmkdgn6ifg1jk00if7bn33sb872vy"; depends=[broom dplyr lazyeval magrittr purrr tibble tidyr]; }; modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; }; modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; }; + modeval = derive2 { name="modeval"; version="0.1.3"; sha256="10yjba2dlwrgd3ycw10y1sa3xdxf2spq829bbxwfissc5l9gk48x"; depends=[caret dplyr e1071 ggplot2 gridExtra knitr magrittr mlbench ModelMetrics psych purrr stringr tibble]; }; modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; modules = derive2 { name="modules"; version="0.5.0"; sha256="1dwvwdfshhdv7fk346l8czbkq0f1im0xfci3pzzinkdlfi3m0h2a"; depends=[stringr]; }; modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; - moezipfR = derive2 { name="moezipfR"; version="1.0"; sha256="192gmn591g7fn0v2kp6i20rpziyf81mgq1gqwvwsrcc7lnbgrw04"; depends=[numDeriv tolerance VGAM]; }; + moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.0.1"; sha256="1bzjrcisbg0fb8kj8x9ngd9i1nrhif1rdacz6nrny6xrmw0m3ckp"; depends=[cvTools]; }; - mokken = derive2 { name="mokken"; version="2.8.4"; sha256="1c3jjsbs8wp2z701y9qmr6v6q90achlchpbfwf31skj6bg2y85zm"; depends=[poLCA]; }; + mokken = derive2 { name="mokken"; version="2.8.5"; sha256="1f45yacq50g0xfvipv3vxrcy20d69q2ijvnx1byxphzfkqjvrlj4"; depends=[poLCA]; }; moko = derive2 { name="moko"; version="1.0.0"; sha256="0nsj83hn0kflsw15ghw6b5zjsd875vj9vj7i0ag67cn2n82yncb5"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; }; molaR = derive2 { name="molaR"; version="4.2"; sha256="1xz4vfb9rkw731cxjqvh7hpcm2lly9hmxp951il536gwb665jh1j"; depends=[alphahull rgl Rvcg]; }; - mombf = derive2 { name="mombf"; version="1.8.3"; sha256="0pbbklhvc4hlw2rpf4vg0p8c9bcq2cd5yxm6x6sbqdf3709ffy6j"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; + mombf = derive2 { name="mombf"; version="1.9.4"; sha256="1vmi3nfhqgdck0haacdjrssqx94w11wh3wc74shlg1ma3dpik1rg"; depends=[actuar mgcv mvtnorm ncvreg survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="1.0"; sha256="02m9909wkwbyc0w1jhvlib7jmwslq16n49a22bq9pdriaq4rmb8m"; depends=[jsonlite openssl]; }; + mongolite = derive2 { name="mongolite"; version="1.2"; sha256="19zhscsgqvzx5gqryzl82dw6impc6sacx2shanmnj4zfgs7bgwqr"; depends=[jsonlite openssl]; }; monitoR = derive2 { name="monitoR"; version="1.0.5"; sha256="1rqcdg4gha5vh3dvxqzr2albi2capm18rkgf79rd769hrk3z09l5"; depends=[tuneR]; }; monkeylearn = derive2 { name="monkeylearn"; version="0.1.1"; sha256="1w0d4cvd1y3wal8r0hg8w08x1zqzkv7ag8nyplmkqv9vwc15qd26"; depends=[digest httr jsonlite tibble]; }; - monmlp = derive2 { name="monmlp"; version="1.1.3"; sha256="1f42d8j6jxz8x3yy02ppimbza3b3dn8402373qhj4yizrfk9wkz9"; depends=[]; }; + monmlp = derive2 { name="monmlp"; version="1.1.4"; sha256="09rjv0d1z6v1qxl0csnip53gc00y23r59xbspn8fqwrwjd1v30l1"; depends=[optimx]; }; monogeneaGM = derive2 { name="monogeneaGM"; version="1.1"; sha256="0fbz26jx05xmna799s086khy6j8xbvv91vh544npd49isnag1v6v"; depends=[ape circular cluster geomorph gplots phytools rgl]; }; monographaR = derive2 { name="monographaR"; version="1.2.0"; sha256="0sis2kw07ifq54w6p56zspmlnvxvq6ajb0sdvc9fk480sfxg9806"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-7"; sha256="1bz967sl6ji84x9v0fypjn75d39naaqgvw31n9lgcd5lyj39hbsk"; depends=[lars MASS mvtnorm pls quadprog]; }; @@ -7033,7 +7213,7 @@ in with self; { mousetrap = derive2 { name="mousetrap"; version="3.0.0"; sha256="06xadwhcpvqji2qdg2a9xnwq5n3qnyfhziifaaargpzzaz25nvmf"; depends=[cstab diptest dplyr fastcluster ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; }; movMF = derive2 { name="movMF"; version="0.2-1"; sha256="1yrjz76bwhziwdj2xdibr3lxcka4nq32b6rq3m9q0vkv9gspmw6v"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="2.1.0"; sha256="1dk83wdfwmxwr6zhy574h9n95kss0b0bprqd20gwwfk27mfjmc8h"; depends=[geosphere httr raster Rcpp rgdal sp]; }; - moveHMM = derive2 { name="moveHMM"; version="1.3"; sha256="1idna90fw1i8g8cnhzxnqvb6bh8w51h426ngknrv8bh1skl09fck"; depends=[boot CircStats ggmap ggplot2 MASS Rcpp RcppArmadillo sp]; }; + moveHMM = derive2 { name="moveHMM"; version="1.4"; sha256="10sylvcmbbf599klmc11ayzh4r94dxl74xc5n61b8n6mbrsmmi2l"; depends=[boot CircStats ggmap ggplot2 MASS Rcpp RcppArmadillo sp]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpMap = derive2 { name="mpMap"; version="1.14"; sha256="0gmhg5ps8yli8699a5aw26skfbjxx4zpp0paqxxdc0zl28l0pdff"; depends=[gdata qtl seriation wgaim]; }; @@ -7055,25 +7235,28 @@ in with self; { mrMLM = derive2 { name="mrMLM"; version="2.1"; sha256="0ip8xd2dj6d4hxq18pf4j6mk4yl00ajci72rr485wk94cr0zj5hy"; depends=[ggplot2 gWidgets gWidgetsRGtk2 lars MASS ncvreg openxlsx qqman RGtk2 RGtk2Extras stringr]; }; mra = derive2 { name="mra"; version="2.16.4"; sha256="134fw4bv34bycgia58z238acj7kb8jkw51pjfa2cwprrgsjdpf5g"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.3.17"; sha256="0a2pn4234ri5likaqbxgkw8xqmwchr6fak3nninral0yzd4rcal5"; depends=[mvtnorm]; }; + mrbsizeR = derive2 { name="mrbsizeR"; version="1.0.1"; sha256="1gr8mx1byq8nw095yla4gn2ascgw4d90j7a3a3rzwfdavkjj7167"; depends=[fields maps]; }; mrds = derive2 { name="mrds"; version="2.1.17"; sha256="1vs9fldk9gcwvd1acwswzvblnkdm4bv3jmaamlrp3ik6vyd6xjvv"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.4"; sha256="1xlgbjm339wr2rs5i6ddyp1lmfgzjb53gw44c3cj1x5qx1jrp7b1"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; - mrfDepth = derive2 { name="mrfDepth"; version="1.0.2"; sha256="0byfcny476zmf11h5aynwix4fshy22aymrw93kybmpvffscjvq3x"; depends=[geometry ggplot2 matrixStats Rcpp RcppEigen reshape2]; }; + mrfDepth = derive2 { name="mrfDepth"; version="1.0.3"; sha256="0d7qz2fvqs28w3ibgfr4j1zjhhbbw78il22i7pl474rpqas3kz2r"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppEigen reshape2]; }; + mrgsolve = derive2 { name="mrgsolve"; version="0.8.6"; sha256="0iv093j9jfpq82qs57kp7clxvsa23iipww2gd9vlqmv8pl9zc0cn"; depends=[BH dplyr lazyeval magrittr Rcpp RcppArmadillo tibble]; }; mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; }; mritc = derive2 { name="mritc"; version="0.5-0"; sha256="1344x7gc7wvmcqp0sydppavavvps5v7bs0dza2fr8rz3sn4as8sa"; depends=[lattice misc3d oro_nifti]; }; + mro = derive2 { name="mro"; version="0.1.1"; sha256="00gc2hd8q5hb2xrswclcqqw1gxl83zmpma6bhsggg3kppsw1dpjv"; depends=[MASS matrixcalc]; }; ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; msBP = derive2 { name="msBP"; version="1.2"; sha256="1sp8njnvv42q8fkcsjzpfg9p9dzz0hjsn2a6b9kfaymx7zvks2sq"; depends=[DPpackage]; }; msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.2.0"; sha256="1yj70wxpqbjiwfskb68nx2criz3v426b1wnc9bnsl9cr417zhn9s"; depends=[ape htmlwidgets]; }; - msaenet = derive2 { name="msaenet"; version="2.4"; sha256="045f38fzlxsawsssyvp7122dc44hvzyha05js7xzb5zg1pq0i1qv"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; + msaenet = derive2 { name="msaenet"; version="2.5"; sha256="0417aaqf3v5c5k3r39387maqvhky7f0wkwhdbxk8cylgkip1ls2k"; depends=[foreach glmnet Matrix mvtnorm ncvreg survival]; }; msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; }; msarc = derive2 { name="msarc"; version="1.4.5"; sha256="1jv364502m6q2w039dmdhwsx5id39jc4xcabyrbwbrgy65kwfspg"; depends=[AnnotationDbi gplots RColorBrewer wordcloud XLConnect]; }; mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; mseapca = derive2 { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; }; - msgl = derive2 { name="msgl"; version="2.3.5"; sha256="0lihvgh86r3swfma6msjbsmfc14b1p1h16v6pkd53v5q3dp4asld"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; + msgl = derive2 { name="msgl"; version="2.3.6"; sha256="0qq9v8bb70iw67raygpzsg35nb2wdafp7rh7wzq42xd4gghi31ya"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; }; msgtools = derive2 { name="msgtools"; version="0.2.7"; sha256="1lk4r9gdhlfarl5z6a48aih682q7dvwa6lf31119lljpa5gmi92y"; depends=[devtools digest hunspell poio tibble]; }; @@ -7085,18 +7268,21 @@ in with self; { msmtools = derive2 { name="msmtools"; version="1.2"; sha256="0pci771mkz9zaf5dbpd9lddpyfffimwsa3mql2z5sbx2xlrycvqj"; depends=[data_table msm survival]; }; msos = derive2 { name="msos"; version="1.0.1"; sha256="0fbxi8x83sj8a6bahc7q28vql00pxqdia2vxb6ilsc459xaph6vc"; depends=[mclust tree]; }; msr = derive2 { name="msr"; version="0.4.4"; sha256="1r7kzicyi380xylw4vl88918gqmvs875f3rssx57yg28swb93sv0"; depends=[colorspace e1071 glmnet RColorBrewer rgl]; }; + mstR = derive2 { name="mstR"; version="1.0"; sha256="0c189ia2mbhn183j0vbqxhwb20ww64fj11pq7p2cd55zfih4kp4b"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.2.10"; sha256="14namzs0s7v28xkj1pidccjpxg7570fdqhd64rihvyv1r7ybfyav"; depends=[RColorBrewer survival]; }; - mtconnectR = derive2 { name="mtconnectR"; version="1.0.1"; sha256="151gybpl7d44syk7xclyhy169na58lab7l5vynrf1ark79xidwa3"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; }; + mtconnectR = derive2 { name="mtconnectR"; version="1.1.0"; sha256="068rp4n2afl9qgqrnp0a4lmnq7mq9wrc2yi361bfvib96gzg1fdw"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.3"; sha256="1hx4m1jnfhkycxizxaklnd9illajqvv1nml8ajfn3kjmrb5z7qlp"; depends=[gam]; }; muRL = derive2 { name="muRL"; version="0.1-10"; sha256="0411vqijsida63jq63qwflr6lvv0rr777z0xba6pn0gpi6khjqqz"; depends=[maps]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; }; mudata = derive2 { name="mudata"; version="0.1"; sha256="1906g4mmv3k2pkzq0y2dr1ahlrdvprw8qyxfkmmkll22qn9pmaqa"; depends=[dplyr ggplot2 jsonlite plyr reshape2]; }; + mudfold = derive2 { name="mudfold"; version="1.0"; sha256="1zh9qh2ja91lk2z4lpkqinn63v577qivbl0qh3xixfr63primby7"; depends=[ggplot2 gtools reshape2 zoo]; }; muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; }; muir = derive2 { name="muir"; version="0.1.0"; sha256="0h3qaqf549v40ms7c851sspaxzidmdpcj89ycdmfp94b2q3bmz98"; depends=[DiagrammeR dplyr stringr]; }; multcomp = derive2 { name="multcomp"; version="1.4-6"; sha256="18pd5v288g4d3kyp1wg0fv6ypyhqq9y17fdxkj0ljsj1f7kgp7py"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-7"; sha256="18gfn3dxgfzjs13l039l2xdkkf10fapjjhxzjx76k0iac06i1p7i"; depends=[]; }; + multdyn = derive2 { name="multdyn"; version="1.5.1"; sha256="1rqvfgz3lcjb1lgzp2w6wzqdysj4c1qrw77nrdc14pgm59g2vvvl"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; multgee = derive2 { name="multgee"; version="1.5.3"; sha256="0m7qgpygsax6f2gakrq19bkxvkl9kn8s4n3wy5lbijx01bay9jg2"; depends=[gnm VGAM]; }; multiAssetOptions = derive2 { name="multiAssetOptions"; version="0.1-1"; sha256="1kb4qxyl9shvrpqfxq26lhh3sssmyjcnhhcl6gcbb0s86snh9ms9"; depends=[Matrix]; }; multiCA = derive2 { name="multiCA"; version="1.0"; sha256="1b4m4faaq57k322m7i7y0jqgj7mz4ch39fsn1via7cnd1rrzavq1"; depends=[bitops]; }; @@ -7104,7 +7290,6 @@ in with self; { multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; - multic = derive2 { name="multic"; version="0.4.3.1"; sha256="16nzvwnh3qjpvzljanzfcz3flvnlir269ss7pic3c6krg6j4m480"; depends=[]; }; multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-10"; sha256="1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"; depends=[Rcpp]; }; multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; }; @@ -7116,7 +7301,7 @@ in with self; { multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; multinet = derive2 { name="multinet"; version="1.0"; sha256="1ydwb86dylywj76sqsl1yy08mzgj8vqj1gkv9q683i9wc4k74281"; depends=[igraph Rcpp]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; - multipanelfigure = derive2 { name="multipanelfigure"; version="0.8.3"; sha256="1mjjy1ql8hxb4lfbbh5njly5wswrkf9d63dw24avk9kn7skfmk4h"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; + multipanelfigure = derive2 { name="multipanelfigure"; version="0.9.0"; sha256="1vblwn15817xxixbcy2smsp51cjyfvh34c1v9ddxypj9ycx09zd3"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; }; multiplex = derive2 { name="multiplex"; version="2.5"; sha256="1yp9n2yzyjrp68fmhv8fgm5qvc4m39qfmw0lnksammmc44hlm12g"; depends=[]; }; multiplyr = derive2 { name="multiplyr"; version="0.1.1"; sha256="0bsf2zhzqwl3skg26fm27j2wpifky0mph26acrlq8p72njkbcw4d"; depends=[bigmemory bigmemory_sri magrittr]; }; @@ -7125,7 +7310,7 @@ in with self; { multisensi = derive2 { name="multisensi"; version="2.0"; sha256="11al13flm3ywgfpj6s6g2jc38bw6pbalf6k5xgix05bgkdd5647s"; depends=[knitr sensitivity]; }; multisom = derive2 { name="multisom"; version="1.2"; sha256="0j993zxpj7q4am6w0w6i6r1ilk47rb5lv9ywyrz98mzm8rfpm4k0"; depends=[class kohonen]; }; multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; - multitaper = derive2 { name="multitaper"; version="1.0-12"; sha256="011qpkwpjclfc24y2qqigmdnikqwdnanflfhihigh5b5k7qwgm5j"; depends=[]; }; + multitaper = derive2 { name="multitaper"; version="1.0-13"; sha256="1ckf9bhvd5k7ypaw2viqh3cyj9jij0ygcp4q9pxwqs508s6yx3a5"; depends=[]; }; multivator = derive2 { name="multivator"; version="1.1-4"; sha256="125ifkpm1pny4rjpzirnwpmpjfg0y8w0rygj0way0p1qwm0l207n"; depends=[emulator mvtnorm]; }; multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-2"; sha256="03cj4767xd1918vb4jkp7xk2l4gq340c0kc24h40zq4c3gsxwmbw"; depends=[]; }; @@ -7152,7 +7337,7 @@ in with self; { mvbutils = derive2 { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; - mvctm = derive2 { name="mvctm"; version="1.0"; sha256="1naxjh2k3vv4wlpzzx0y2zwvbn4kdqyls8a8qx6bz609ynzay5r9"; depends=[Formula MNM nlme quantreg Rfit]; }; + mvctm = derive2 { name="mvctm"; version="1.1"; sha256="00lrnqnzpnvrl84b41ai33iwpyb4qzpjyqrw1d18hj6szybdfhsv"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; }; mvdalab = derive2 { name="mvdalab"; version="1.2"; sha256="0jgvpspvfj4m79rn8bfb7rihh6w948b7z66qisckdmv6wyxwwr4i"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.1-2"; sha256="1051l10fbr7m9rmrlvj98660f0pn992n3vxiwnhml07wvvdknw3d"; depends=[Matrix numDeriv]; }; @@ -7178,7 +7363,7 @@ in with self; { mwa = derive2 { name="mwa"; version="0.4.1"; sha256="0bd4i1zzwmcsrm2bg14f528yav5hb6qxcd7x4i5rwdcx1hlx27bw"; depends=[cem MASS rJava]; }; mwaved = derive2 { name="mwaved"; version="1.1.4"; sha256="09v3cx2scp8fjcjzsdf7k2xl5y2491hbp25mnbjvm6v16hi2g180"; depends=[Rcpp shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; - myTAI = derive2 { name="myTAI"; version="0.4.0"; sha256="15ax5hwgqqyf5qmpmnjqvszwxyvvasmmxc03m53f7gdnpmv2wpg8"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 nortest RColorBrewer Rcpp readr reshape2 taxize]; }; + myTAI = derive2 { name="myTAI"; version="0.5.0"; sha256="1lnqpp06qvwg2qrf4ilh059gkv105zkpcz2yrhzg4xl6581mz455"; depends=[doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1"; sha256="1ibcxl9v2d2mxpwad0rv5dw1j645rrg05f4aqvyhyd40hz9823mr"; depends=[lattice]; }; myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; @@ -7193,9 +7378,9 @@ in with self; { naivebayes = derive2 { name="naivebayes"; version="0.9.1"; sha256="051mg1idim75k181v4n8s5rji94rwy9c75yjkavjhr4brhizqy8f"; depends=[]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; - nanotime = derive2 { name="nanotime"; version="0.1.1"; sha256="1jir0hhksa4shfn7paln9s3ccsmmyl70hlsk9q5glwi87j6mhlnn"; depends=[bit64 RcppCCTZ zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.1.2"; sha256="1faiqjbgp1qyr8wpqwwzynl8rcrkzh680j2vqczzg3d7fvcwvl34"; depends=[bit64 RcppCCTZ zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; - narray = derive2 { name="narray"; version="0.1.1"; sha256="0n620wzhmlyjkbbwr0py2xfk0vj59a5zyr4d93iyplcrjg91n6zg"; depends=[abind pryr reshape2 stringr]; }; + narray = derive2 { name="narray"; version="0.2.2"; sha256="0cxibb8lhv3in44xxln3fw6rf8c9a18bdhcdiyp3cpcm83h22nh7"; depends=[abind pryr reshape2 stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; nat = derive2 { name="nat"; version="1.8.7"; sha256="14mfjlhf08ypbml8zqz90z80dljqk9ns7mk1h0s0fma308xwab7m"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; @@ -7208,14 +7393,14 @@ in with self; { nbconvertR = derive2 { name="nbconvertR"; version="1.0.2"; sha256="1dc9jxfibvb27qwiykj93322nb1ahwrg69zqcc0p9xp0rpsim02w"; depends=[]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; ncappc = derive2 { name="ncappc"; version="0.2.1.1"; sha256="19wq7ihcr8989xpzf1dsxz1kwwzqvsx2mwcciqv9204k4fc94zjc"; depends=[dplyr ggplot2 gridExtra gtable knitr lazyeval readr reshape2 scales testthat xtable]; }; - ncar = derive2 { name="ncar"; version="0.3.1"; sha256="1mlqmz4737827dl131lqg5mbn8sk4ghiazlicdp99cjq5vr8fk7h"; depends=[dplyr Hmisc lubridate measurements tidyr]; }; + ncar = derive2 { name="ncar"; version="0.3.4"; sha256="1q9744gj0mj7w6b28mala7lzmxy8q99jkkpi3png2awwr2ilznw7"; depends=[rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; }; - ncdf4 = derive2 { name="ncdf4"; version="1.15"; sha256="0kad69py4nhlsl4xmsfdisx0kzcjch91c0m786h80v3w67s9i0nm"; depends=[]; }; + ncdf4 = derive2 { name="ncdf4"; version="1.16"; sha256="0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; }; ncf = derive2 { name="ncf"; version="1.1-7"; sha256="0r3xhpinkcnkzc855q8ddd889v12snx4n1g8jyw9cnmrki8n2hxh"; depends=[]; }; ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; - ncvreg = derive2 { name="ncvreg"; version="3.8-0"; sha256="19yir4bwinpd6rgk6ncg3x42qpx3d884f91qq9gl16y9kc4blp87"; depends=[]; }; + ncvreg = derive2 { name="ncvreg"; version="3.9-0"; sha256="0z6zh2jhgf7yj4ajmhggbf6v522jg5cc0dd56bbxakypvl7mhzfq"; depends=[]; }; ndjson = derive2 { name="ndjson"; version="0.2.0"; sha256="1y6hjcip18mazss7g888pydywb07hkfrk6ams0sm71yckyc865lb"; depends=[data_table dtplyr Rcpp Rcpp11]; }; ndl = derive2 { name="ndl"; version="0.2.17"; sha256="08h01rw7gsa31zp91q2rsw1ba9yf0fyhz3w8s9xq5788qwc80280"; depends=[Hmisc MASS Rcpp]; }; ndtv = derive2 { name="ndtv"; version="0.10.0"; sha256="1j4g5qclfbw7fkykaclrsb2d70vy40fd1rgr1n73qyrkx0fyym44"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; @@ -7230,35 +7415,37 @@ in with self; { neotoma = derive2 { name="neotoma"; version="1.6.2"; sha256="023dpcrhhq8daa0c4viccqs9y19gi05srz4d985diaq7yxjs9vhz"; depends=[analogue httr jsonlite plyr reshape2 xml2]; }; nephro = derive2 { name="nephro"; version="1.1"; sha256="06lxkk67n5whgc78vrr7gxvnrz38pxlsj4plj02zv9fwlzbb9h6p"; depends=[]; }; nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; }; + net_security = derive2 { name="net.security"; version="0.1.0"; sha256="0p9hh89bp0s6v8i8zkm5s4lm5sg6p6z0q8ww2c23qb81038pak3k"; depends=[data_table dplyr jsonlite plyr R_utils stringr XML]; }; netClass = derive2 { name="netClass"; version="1.2.1"; sha256="04yrj71l5p83rpwd0iaxdkhm49z9qp3h6b7rp9cgav244q060m9y"; depends=[AnnotationDbi graph igraph kernlab Matrix ROCR samr]; }; - netCoin = derive2 { name="netCoin"; version="0.2.2"; sha256="18ffpkcqhpw3b5jrlv63av8v2hhpgz8pqvg5mwc5mmqgar0cffb0"; depends=[igraph Matrix]; }; + netCoin = derive2 { name="netCoin"; version="0.2.5"; sha256="0bhn7jhwr5jf8hmw4n86fg4994bhcjd6awcx96gm2qgf1j5r2m44"; depends=[igraph Matrix]; }; netassoc = derive2 { name="netassoc"; version="0.6.2"; sha256="01h0nnyrgv08bxyl01lqsqnj69bhkwci692h77vfa7cf8rsm67kg"; depends=[corpcor huge igraph infotheo rags2ridges vegan]; }; netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.17.0"; sha256="15yq903li51s2mbjp7bqrvk2zcf2yjmvvma2ynp325aqhwgvisf7"; depends=[boot igraph MASS Matrix network Rcpp RcppArmadillo sna SparseM]; }; netgen = derive2 { name="netgen"; version="1.3"; sha256="1iywpl9n1yplnd38dff8m9mz1vlfbvplw393grhpav5czcknj160"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; }; netgsa = derive2 { name="netgsa"; version="3.0"; sha256="0cqyiilpxhdi6zmibn85y1aqwpcs1aialz34klakmllzn6kvdsng"; depends=[corpcor glasso glmnet igraph Matrix]; }; - netmeta = derive2 { name="netmeta"; version="0.9-2"; sha256="1hzmlac8kpgh27783fir27dwvzga1v00098qy8z955iy4nkpm1pq"; depends=[magic meta]; }; + netmeta = derive2 { name="netmeta"; version="0.9-4"; sha256="04p59iwhibaqhcwr39axlhjl7h704fpckh4rfqiqfv87p7wyifwj"; depends=[magic MASS meta]; }; nets = derive2 { name="nets"; version="0.8"; sha256="10h6sqy9jw2a909nzmzd5x9cjg3w4wpqwikp23k4q9fj71aswd5v"; depends=[igraph]; }; nettools = derive2 { name="nettools"; version="1.0.1"; sha256="13fw316r31g9cjlbyy9qfccsyagxb6pyvn5k32f166b7vj92mk1q"; depends=[combinat dtw igraph Matrix minerva minet rootSolve WGCNA]; }; network = derive2 { name="network"; version="1.13.0"; sha256="11sg330xb7gcnl3f6lwhhjdabz6mk43828i2np635pqw4s4yl13s"; depends=[]; }; - networkD3 = derive2 { name="networkD3"; version="0.3"; sha256="0g1l8a6qlpxylxnnavjcwdjx6v8nxkxzigilywyqhqhmpcsnp7bg"; depends=[htmlwidgets igraph magrittr]; }; + networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; networkDynamic = derive2 { name="networkDynamic"; version="0.9.0"; sha256="1949fbcw0gq8lsm6rx5d5mpj1y9k4rk2v0pmm1kxi5igi6yd8lg9"; depends=[network statnet_common]; }; networkDynamicData = derive2 { name="networkDynamicData"; version="0.2.1"; sha256="176al8jp0gha6yzhyn5flmyackmmdnh1h8sasqrdcmba7ha7cya6"; depends=[network networkDynamic]; }; networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; }; networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; + networktools = derive2 { name="networktools"; version="1.0.0"; sha256="00zp2mvxn3pgac6wdyhra64fk3i0h3vhf5f7y1v0pvdhhrz3wk6z"; depends=[devtools ggplot2 gridExtra igraph IsingFit NetworkComparisonTest nnet qgraph reshape2]; }; neuRosim = derive2 { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq9013252ycbi9igh28s0j4dbdx52pv3iixzl"; depends=[deSolve]; }; neural = derive2 { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; }; neuralnet = derive2 { name="neuralnet"; version="1.33"; sha256="14ga04mcd793v9a2584jb9l7n20kw00fgy3gayfwrkr1j39szdls"; depends=[MASS]; }; - neurobase = derive2 { name="neurobase"; version="1.9.2"; sha256="048z1m8kx5g91v6hram4xchyfa28kkp8cjc8rkdvs6r1wrflp0a3"; depends=[matrixStats oro_nifti R_utils RNifti]; }; + neurobase = derive2 { name="neurobase"; version="1.13.2"; sha256="1sv2kxahw123f6a7cl35n6dyz4ip8iifzk4dcp6jf8fnnnjyg8aq"; depends=[matrixStats oro_nifti R_utils RNifti]; }; neuroblastoma = derive2 { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; - neuropsychology = derive2 { name="neuropsychology"; version="0.3.0"; sha256="17jil4xsys676n73icpx5b9d1jilqq190xcdqjq7da11pvig76i9"; depends=[BayesFactor dplyr ggcorrplot ggplot2 Hmisc htmlTable lme4 MuMIn png prettyR tm wordcloud2]; }; - ngram = derive2 { name="ngram"; version="3.0.2"; sha256="01ji3whn10m6z29vhi01vpjl09ci1r52arrjp73s7z3y0l6pj9r7"; depends=[]; }; + neuropsychology = derive2 { name="neuropsychology"; version="0.5.0"; sha256="0hlbjf8hxz4cl7fvg9mbyfmcyyxncc2nh9h1mrd2yzgrpgn0d0b5"; depends=[BayesFactor caret dplyr ggcorrplot ggplot2 Hmisc htmlTable lme4 MuMIn png ppcor psych stringi tidyr tidyverse tm wordcloud2]; }; + ngram = derive2 { name="ngram"; version="3.0.3"; sha256="03jfi07b7wzh2ydrrim9d9laragc9a7mri2gqmnqbf98f74s8vkn"; depends=[]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.1-3"; sha256="08g1786vxb544r6i6mccd4gzzgcq35m0af65326m82xxyffiv6gw"; depends=[batchmeans lattice Rcpp RcppArmadillo]; }; nhanesA = derive2 { name="nhanesA"; version="0.6.4.3.3"; sha256="09mpxmk8w48hc14167jd2xifnj0kjz9h3h76bdnbb33wvhkn4jld"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; - nhlscrapr = derive2 { name="nhlscrapr"; version="1.8"; sha256="0y2shw3g84flh88a15czdsb62xwdqxhvzkn4kpbn0k9ddyfzxc48"; depends=[biglm bitops RCurl rjson]; }; + nhlscrapr = derive2 { name="nhlscrapr"; version="1.8.1"; sha256="107k063279w9cy6in99rn03w2rq42ci8s6dvb9x6f9w7y3bdpvzn"; depends=[biglm bitops RCurl rjson]; }; nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; }; @@ -7266,7 +7453,7 @@ in with self; { nimble = derive2 { name="nimble"; version="0.6-3"; sha256="0j52kqr53lxmsc7dsv67mbqr5lg51vc2l7fqnv6qmrnzl4mn5ds0"; depends=[coda igraph]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; - nleqslv = derive2 { name="nleqslv"; version="3.1"; sha256="0vvyyafighfck8f9imcpqlr1b5v3znsr5czgl5k4b02jymdwrhvs"; depends=[]; }; + nleqslv = derive2 { name="nleqslv"; version="3.2"; sha256="1832p6hyg9lms570m9hjn7fngrj6br0qhrgk8k9dsvg04cyrmpqc"; depends=[]; }; nlme = derive2 { name="nlme"; version="3.1-131"; sha256="0k2nvdzhic6bzhfsbq6la6q6a1i5nlj4pnh6lpdxiiwvxdks3nkr"; depends=[lattice]; }; nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; @@ -7278,6 +7465,7 @@ in with self; { nls2 = derive2 { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-1"; sha256="0676n78265z00dacmq593c9l2239ii574djm9s7i7w8jk1kdhzx2"; depends=[nlstools]; }; nlsem = derive2 { name="nlsem"; version="0.7"; sha256="1g5vnqmqq4swnid3601f1cm0q9w9k802394jd3yac95n8sm05i5g"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; + nlshelper = derive2 { name="nlshelper"; version="0.2"; sha256="02xnx0j8p1im1hdwnia3n51dicscjf8s33y475i3dczvhmivvbmf"; depends=[broom dplyr magicaxis mgcv nlme]; }; nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; }; nlsr = derive2 { name="nlsr"; version="2017.2.19"; sha256="0y1qfg042yk855v6i45w00mbmwic1ravlkrd0fbnr8zrvq74iy1s"; depends=[digest]; }; @@ -7287,6 +7475,7 @@ in with self; { nlts = derive2 { name="nlts"; version="0.2-0"; sha256="14kvzc1p4anj9f7pg005pcbmc4k0917r49pvqys9a0a51ira67vb"; depends=[acepack locfit]; }; nmcdr = derive2 { name="nmcdr"; version="0.3.0"; sha256="1557pdv7mqdjwpm6d9zw3zfbm1s8ai3rasd66nigscmlq102w745"; depends=[CDFt]; }; nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; }; + nmw = derive2 { name="nmw"; version="0.1.1"; sha256="0dqcix916as40h54i78g4437k8zbdlwbdfzmjyp08i9xr0gc0a80"; depends=[]; }; nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; }; nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; @@ -7307,7 +7496,7 @@ in with self; { nonrandom = derive2 { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; - nopaco = derive2 { name="nopaco"; version="0.99.8"; sha256="07pff53nzilbl0ww6jzxw0m8z6x4ssb1xajzgi8bck2bsdd8bhid"; depends=[Matrix]; }; + nopaco = derive2 { name="nopaco"; version="1.0.3"; sha256="1sbjgzd7q2gjhs5qsy23w30cv73d9d6g08ymq18wppqpir5hikh2"; depends=[Matrix]; }; nopp = derive2 { name="nopp"; version="1.0.8"; sha256="0yjnzxlmadh2g0frfwm7rrr0kqb5pjvrnjmzl6pikzr99yh8aags"; depends=[MASS mlogit]; }; nor1mix = derive2 { name="nor1mix"; version="1.2-2"; sha256="14djjhhivl49jnsmnydcswmc6bzfvgjjg7pibg32a9p3y2f0lmnq"; depends=[]; }; nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; }; @@ -7318,7 +7507,7 @@ in with self; { normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; - nortestARMA = derive2 { name="nortestARMA"; version="1.0"; sha256="170dqxaln51snqzqjwagd16f2x4aarqg3xsim0gbvfqlv43sksb7"; depends=[astsa]; }; + nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; not = derive2 { name="not"; version="1.0"; sha256="1hwrka8a5jygm3zjh5jhzjx2bvdqip7pb5009vkk7k0sp8m760kq"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; @@ -7344,7 +7533,7 @@ in with self; { nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.4.0"; sha256="1p5hp8mld05p03lrgyqwdh5wg4qh7n2bqx9w5p7z4dvvh6h67nji"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.0.1"; sha256="13fc84ahv2gid3b1iyyc151v10pafaxbbym3g891ivxglyw10zy1"; depends=[Rcpp RcppArmadillo]; }; - nproc = derive2 { name="nproc"; version="2.0.4"; sha256="1hbyf1n2s4wbd0206a69pf6akyxv6gx3dvifn26nizas3iaccp48"; depends=[ada e1071 glmnet MASS randomForest]; }; + nproc = derive2 { name="nproc"; version="2.0.6"; sha256="07f5awjc7ds8xghvkvc0z6jna4n09syr63941n8g2q9099rvw9kc"; depends=[ada e1071 glmnet MASS randomForest ROCR tree]; }; npsf = derive2 { name="npsf"; version="0.2.0"; sha256="0cww1fi0amgc9n1hbfy3z7xgwrbcdwvsr2d6l8lpsr1bdcpgbjzv"; depends=[Formula]; }; npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; }; npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; }; @@ -7360,16 +7549,16 @@ in with self; { nucim = derive2 { name="nucim"; version="1.0.0"; sha256="0fyapw6f5wkybr4mwmqpk9wy349j5sa4q26pci1bsy4ly2wf9wx6"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1"; sha256="07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"; depends=[]; }; - numOSL = derive2 { name="numOSL"; version="2.1"; sha256="1my1pb23qafh96kk5vyjgks06g8pk9pkhk9rnqx76y5fdb5m8yy1"; depends=[]; }; + numOSL = derive2 { name="numOSL"; version="2.2"; sha256="03dy8inwm1s4kiql7iaisvn7xyr1lz96srqi3jarsyjipvbicjfb"; depends=[]; }; numbers = derive2 { name="numbers"; version="0.6-6"; sha256="05qmv12b90vkzf2b50qjnp8hja6rms91jj97knx70n2yhpb2lnd9"; depends=[]; }; nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; }; nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; }; nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; }; nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; }; nycflights13 = derive2 { name="nycflights13"; version="0.2.2"; sha256="1857pwyhb5gvbdxv934nlc50n4ai7njm89js7b7ywfg7mhgha4yc"; depends=[tibble]; }; - nzelect = derive2 { name="nzelect"; version="0.2.0"; sha256="1ijyvqm8yz3wib8wyibcxqx6p848xgxjrl84ppwq0nx0ic0vizbm"; depends=[]; }; + nzelect = derive2 { name="nzelect"; version="0.3.3"; sha256="1y1nwcgghk64gmh1jn01gm3qqk5ja88gm59xq6bhl9pb03416n0p"; depends=[]; }; nzpullover = derive2 { name="nzpullover"; version="0.0.2"; sha256="0c50854dhvjmhh8c34w9w0r8v8wk5j8bi6j81m5wpcd2jxrkbw4f"; depends=[]; }; - oXim = derive2 { name="oXim"; version="1.1.2"; sha256="1270m0mng8sz8bsa8gi0pkp2znglv2sqzhq3s09mj73c0l96pzm7"; depends=[gstat imagine R_matlab sp]; }; + oXim = derive2 { name="oXim"; version="1.2.1"; sha256="1qjscjq5v50v7kwbmiz1niylwpnh20g5qldyxn7fw0kkqs398sk0"; depends=[gstat imagine R_matlab sp]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; oai = derive2 { name="oai"; version="0.2.2"; sha256="0q1w29wrppi5sfabdw8px7zr92bgri3jhy0y7dhi46xggxfg9vm1"; depends=[httr plyr stringr tibble xml2]; }; @@ -7387,32 +7576,33 @@ in with self; { observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; oc = derive2 { name="oc"; version="0.96"; sha256="110pf3rqcab0671djx25jwwl8rbaskcd2lrcv56d786j693y2ash"; depends=[pscl]; }; occ = derive2 { name="occ"; version="1.0"; sha256="1rpgq6mqrdzz52ln897f5k8yyz5i14s3lxqmy3nwsxf3q2bdf3yh"; depends=[]; }; - oce = derive2 { name="oce"; version="0.9-20"; sha256="1pckxrkkgb22rrm1q9j2xijnbhk6j260rq8pvmi02l8mdx6l99l5"; depends=[gsw]; }; - oceanmap = derive2 { name="oceanmap"; version="0.0.2"; sha256="0pbwja7m0ng2j2147sgc07v3q80xmj3bwidvqksigklka4zx822q"; depends=[abind extrafont fields mapdata maps maptools marmap ncdf4 plotrix raster sp]; }; + oce = derive2 { name="oce"; version="0.9-21"; sha256="1nwnfs75mdq0s13jz5l9zv1rjx5637yljhrc56sghwq38gi1mpal"; depends=[gsw]; }; + oceanmap = derive2 { name="oceanmap"; version="0.0.5"; sha256="1afjkkfx2040606x2ivkppl14207d02y03i058gnkf9zdnvr15nc"; depends=[abind extrafont fields mapdata maps maptools marmap ncdf4 plotrix raster sp]; }; ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; }; ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; }; ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; odbc = derive2 { name="odbc"; version="1.0.1"; sha256="0i047xpp481r5lsmrk853fcwhhvanwl6xdbddjgypd0mf0c11ng0"; depends=[BH blob DBI Rcpp]; }; odds_converter = derive2 { name="odds.converter"; version="1.4"; sha256="13y3s04l2jvjhn1i4syz4y3q42ba8br0sp3mks5f5h4cp8w4j3wy"; depends=[]; }; oddsratio = derive2 { name="oddsratio"; version="0.3.1"; sha256="0vpqhb6zady7facbrv5g3idxnzwy65237w6wfdxafsx40vc7bcig"; depends=[cowplot ggplot2 MASS mgcv]; }; - odeintr = derive2 { name="odeintr"; version="1.7.0"; sha256="0qjgiik1vg4cp0fh07zabbmlxq12074nqczqxgf49sgvjgmasxx0"; depends=[BH Rcpp]; }; + odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odfWeave = derive2 { name="odfWeave"; version="0.8.4"; sha256="1rp9j3snkkp0fqmkr6h6pxqd4cxkdfajgh4vlhpz56gr2l9j48q5"; depends=[lattice XML]; }; odfWeave_survey = derive2 { name="odfWeave.survey"; version="1.0"; sha256="0cz7dxh1x4aflvfrdzhi5j64ma5s19ma8fk9q2m086j11a1dw3jn"; depends=[odfWeave survey]; }; oec = derive2 { name="oec"; version="2.2"; sha256="11ldy303xkl7qaqvlzfwr7qxwnz06n39mkjvrj0sca6xzw12lq5d"; depends=[curl data_table jsonlite plyr servr]; }; - oem = derive2 { name="oem"; version="2.0.4"; sha256="1n9b8zw4d3ydirrrl4n14as5x8jc10bzfza4zs4gn6ljk5p3lsci"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; - officer = derive2 { name="officer"; version="0.1.0"; sha256="155vzgxrprsnk11m3d8wmvr40pkw1sp99p82g07d6l9d5ix1s28r"; depends=[base64enc digest dplyr gdtools lazyeval magrittr purrr R_utils R6 Rcpp tibble xml2]; }; - oglmx = derive2 { name="oglmx"; version="2.0.0.1"; sha256="03lsgdz2pjykzcv7k9r940rgh7qh7vn651nrshx1r0b63mh9cqsj"; depends=[maxLik]; }; + oem = derive2 { name="oem"; version="2.0.5"; sha256="1zhfq4njxsq6fq73y6nxz637h85xk3mj19y7v3b37ma3cqb2s52p"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; + officer = derive2 { name="officer"; version="0.1.1"; sha256="0qn77x6zfkrcfmlhndfj6a4kbicr6s7wshz8r90s92vmvdzvv703"; depends=[base64enc digest dplyr gdtools ggplot2 lazyeval magrittr purrr R_utils R6 Rcpp tibble xml2]; }; + oglmx = derive2 { name="oglmx"; version="2.0.0.3"; sha256="02skdnf89ryl4d8ja1a9mj1jzzmjqjgfdcsf6v5dpjn1z9aycc6c"; depends=[maxLik]; }; oii = derive2 { name="oii"; version="1.0.1"; sha256="0w1afajkr5vly9qi1r2iz1ikbvyvy6hcbc10g8s7g6zi8db5dgf4"; depends=[Deducer gmodels rapportools]; }; okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; }; okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; }; olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; }; omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; + ompr = derive2 { name="ompr"; version="0.6.0"; sha256="1yjzi2xg9543g0bwx95anvx2sckdmbbh7k4hmljff2lrpffwf735"; depends=[dplyr lazyeval Rcpp]; }; + ompr_roi = derive2 { name="ompr.roi"; version="0.6.0"; sha256="0j0mbkbwb3iz00b1p8q5jsydhj3j36mjqc762mcspml1i68ip8iy"; depends=[ompr ROI]; }; oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; onemap = derive2 { name="onemap"; version="2.0-4"; sha256="00xmhm5qy0ycw0mnlyl20vfw0wxmpb36f07k0jj92c4zbpwjiygx"; depends=[tkrplot]; }; - onewaytests = derive2 { name="onewaytests"; version="1.2"; sha256="1fscyffmvlasx56hxlk2b60fk0scfjbb3yk5q74ffszk4xvqbrzg"; depends=[]; }; + onewaytests = derive2 { name="onewaytests"; version="1.4"; sha256="0p48bic8fnj4bgrlh3r7flbaj12z3ir5bigmvh8izznablq93wkk"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.2-4"; sha256="0x3n9mwknxjwhpdg8an0ilix5cb8dyy5fqnb6nxx7ww885k0381a"; depends=[]; }; - onlineCPD = derive2 { name="onlineCPD"; version="1.0"; sha256="1hdj9wizf0b2vs481fnx80m4b7rqp0bl14xbxfcawlk9d82q2mh2"; depends=[ggplot2 gridExtra reshape2 scales]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; ontologyIndex = derive2 { name="ontologyIndex"; version="2.4"; sha256="168m4jdwbzv8lpimx9063306691hnfdjmdhb5y8195d9vcq049jr"; depends=[]; }; @@ -7423,47 +7613,50 @@ in with self; { openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-2"; sha256="1472gg651cdd5d9xjxrzl3k7np77liqnh6ysv1kjrf4sfx13pp9q"; depends=[rJava]; }; openVA = derive2 { name="openVA"; version="1.0.3"; sha256="09wbhl0g6q1rhi6yr3wpbns4ik7jalpagacn6am09i6zvmz8745j"; depends=[ggplot2 InSilicoVA InterVA4 nbc4va Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; - openair = derive2 { name="openair"; version="2.0-0"; sha256="1cwlk0vi510065p1rb70h5rsprd55xfyb7ym8mv93iwvqgwxhx5j"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapproj maps MASS mgcv plyr RColorBrewer Rcpp reshape2]; }; + openair = derive2 { name="openair"; version="2.1-0"; sha256="0ybly7xmxrlyn12al2pk1w1yjm857npj3ih3zl1p0sd744x8pm6w"; depends=[cluster dplyr hexbin lattice latticeExtra lazyeval lubridate mapproj MASS mgcv plyr RColorBrewer Rcpp reshape2]; }; opencage = derive2 { name="opencage"; version="0.1.0"; sha256="0fx5l5rzl9c7df03bvxcykfcrqjl2ld5k49kzsc5d157gxynnh56"; depends=[dplyr httr jsonlite memoise]; }; opencpu = derive2 { name="opencpu"; version="1.6.1"; sha256="01m9zrbyishf4qbsw6fnfihnw4470qvv6br63zbzj2c7jzpi0v6g"; depends=[brew devtools evaluate httpuv httr jsonlite knitr openssl protolite]; }; openintro = derive2 { name="openintro"; version="1.4"; sha256="1k6pzlsrqikbri795vic9h191nf2j7v7hjybjfkrx6847c1r4iam"; depends=[]; }; openssl = derive2 { name="openssl"; version="0.9.6"; sha256="0ffwllii8xl6sa2v66134g0fwaw1y3zn3mvaa4nrc120vv5d3mkd"; depends=[]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; - openxlsx = derive2 { name="openxlsx"; version="4.0.0"; sha256="1jz75kxpbbdw3bf9a49fih4wlk36nki3nr8yq7v9n31qzyb5k3qy"; depends=[Rcpp]; }; + openxlsx = derive2 { name="openxlsx"; version="4.0.17"; sha256="1mq4lasp12kc30sxcsmz9gskd114l8s7z7wd6svv2nm8qllrhsqi"; depends=[Rcpp]; }; opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; }; operator_tools = derive2 { name="operator.tools"; version="1.6.3"; sha256="1v4dg7xhz24dnp0zxn815x1405ig64ibii6y40la1gvmzcc41dz5"; depends=[]; }; operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; ops = derive2 { name="ops"; version="1.0"; sha256="0cvwyn5sz5lx8sin8w4k8ymslfl4nfaa012a9vcl2hvp4850rk25"; depends=[]; }; optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; optBiomarker = derive2 { name="optBiomarker"; version="1.0-27"; sha256="1kkj602d4klwyd8kylawgfysg8dlp2g6j7afkppzv5x8mbhs5ji4"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; - optCluster = derive2 { name="optCluster"; version="1.1.0"; sha256="1p4mwnarai1kakyb0w8z46c3lwnwcndvfxspywh72mj35wfrdbc8"; depends=[cluster clValid gplots kohonen MBCluster_Seq mclust RankAggreg]; }; + optCluster = derive2 { name="optCluster"; version="1.1.1"; sha256="0nb9b2lbsrl1gldy27vnqqd0z439vbvjg1h4a1rvqj01ik4xzfyn"; depends=[cluster clValid gplots kohonen MBCluster_Seq mclust RankAggreg]; }; optDesignSlopeInt = derive2 { name="optDesignSlopeInt"; version="1.1"; sha256="0vpm4359rq5v231k63vgaac6iv2ybfkcpy59n86djb710b3h2qcn"; depends=[MCMCpack neldermead]; }; optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; optband = derive2 { name="optband"; version="0.2"; sha256="0a0kr8h4asziq66k1556mabwjyib84v0arn4jmb0gjzxjrg6rk2f"; depends=[LambertW]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; }; optiRum = derive2 { name="optiRum"; version="0.37.3"; sha256="1g3kgfwa7ckh45v14qdi3gq9vy0zfpjaffcgpfapyylrsrnspy3f"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; - optiSel = derive2 { name="optiSel"; version="0.3"; sha256="1b4yrijkdxd78wyjjskawahrzj1k3cgh5d7mpcyr2li1hg86k7m1"; depends=[alabama cccp data_table kinship2 MASS Matrix nadiv nloptr pedigree plyr pspline quadprog Rcpp RcppArmadillo Rcsdp stringr]; }; + optiSel = derive2 { name="optiSel"; version="0.7.1"; sha256="1klf68s3c65sp8ap7f4jq1sl9aqvhjzqcd44r3lzjxpspnm8055m"; depends=[alabama cccp data_table kinship2 magic MASS Matrix nadiv nloptr pedigree plyr pspline quadprog Rcpp RcppArmadillo Rcsdp stringr]; }; opticut = derive2 { name="opticut"; version="0.1-0"; sha256="0dh7zw8yrzxw3vfzfm776rdhfczmlwfs3fw568s5cc60xsn8fa93"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; }; optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; }; optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; }; + optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; }; optimization = derive2 { name="optimization"; version="1.0-1"; sha256="1smmpv9ahv2fdfqxlpp42wzg08xhhj9niay8wsd49799xvpcw1jg"; depends=[colorspace Rcpp]; }; optimr = derive2 { name="optimr"; version="2016-8.16"; sha256="02dgwkcjhf6ciwb6x6gyk7nn4v2jras7l1icfd4pjbypiapwnck9"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-5"; sha256="1aiq0w2zlra3k6x4hf2rglb6bj8w25yc8djnpgm508kkrbv3cc17"; depends=[optimbase]; }; + optimus = derive2 { name="optimus"; version="0.1.0"; sha256="1dz0wczyl1awv3s01malmyrzwijxdywh0xhpfh1i0pncbb4rq3vc"; depends=[mvabund ordinal]; }; optimx = derive2 { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; }; optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; }; optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; }; optmatch = derive2 { name="optmatch"; version="0.9-7"; sha256="1ps3qd7kidi0n1m9nxspz03sdw7p3lcg31q3p7c13l3vb226i5yj"; depends=[digest Rcpp RItools survival]; }; optparse = derive2 { name="optparse"; version="1.3.2"; sha256="1g8as89r91xxi5j5azsd6vrfrhg84mnfx2683j7pacdp8s33radw"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; }; + optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; }; opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; }; ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; }; orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; }; orclus = derive2 { name="orclus"; version="0.2-5"; sha256="0kkxhyqjxib862npinzf3mipqg5imgscdmb5wqm8wf2j2mbislsx"; depends=[]; }; - orcutt = derive2 { name="orcutt"; version="2.0"; sha256="07190v3llnpkvrgsd33bbdywlvmqqgysn0p4y8krb3wgxx2dv6kg"; depends=[lmtest]; }; + orcutt = derive2 { name="orcutt"; version="2.1"; sha256="1ljzgi6dgawgz3rr9n7g3r4cfil3qplzjphd9bxj84ayi31vy0pk"; depends=[lmtest]; }; ordBTL = derive2 { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; }; ordDisp = derive2 { name="ordDisp"; version="1.0.1"; sha256="1vjki73h8933z36ikwmjn84ldz154mahp2jkd9cbj5n6xsi47fnw"; depends=[VGAM]; }; ordPens = derive2 { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; }; @@ -7474,11 +7667,13 @@ in with self; { ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; }; ordinal = derive2 { name="ordinal"; version="2015.6-28"; sha256="0lckjzjq2k8rlibrjf5s0ccf17vcvns5pgzvjjnl3wibr2ff4czs"; depends=[MASS Matrix ucminf]; }; ordinalCont = derive2 { name="ordinalCont"; version="1.0.2"; sha256="0dj98ziwaka1a2bra6zzqqwmw9f0ki5iyzibslix0brk9v8lq3km"; depends=[boot]; }; + ordinalForest = derive2 { name="ordinalForest"; version="1.0"; sha256="1hmvr94s7fwpqzziaqh01w7c7hg1z4ms03cll8v13jkbaryk3yik"; depends=[combinat ggplot2 ranger]; }; ordinalNet = derive2 { name="ordinalNet"; version="1.5"; sha256="1iy8vgx6znnazhzx7m649hbikliwv9j5c5nrr0jrbdl28d84qapl"; depends=[]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.3"; sha256="0ki91l6vvfxpzq7zgl3d08r5pzx47jxkgf7g0g95580xx2q7n7zx"; depends=[survival]; }; - ore = derive2 { name="ore"; version="1.5.0"; sha256="0bvpi4gz71qgi21byax6np0ivr2a9b9qnzywhl06rbkx9l0r2yfn"; depends=[]; }; + ore = derive2 { name="ore"; version="1.6.0"; sha256="115s3wq7rrpmx65k9jlpf2x1d218gnl7vsc8zsvmjbsi4gfyliwf"; depends=[]; }; ores = derive2 { name="ores"; version="0.2.0"; sha256="164z4r4894r8j5vigh5rsqwkslmgdwj0rsl088fq0hb40p3w1nd0"; depends=[httr]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; + orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; }; originr = derive2 { name="originr"; version="0.2.0"; sha256="06n5qshk4dq6ac4prnhzymz7gcmp6m2zdc8d9d13ii7n7xa0ymx2"; depends=[data_table httr jsonlite taxize xml2]; }; orloca = derive2 { name="orloca"; version="4.2"; sha256="14accc5kcvvin5qav6g3rx10by00r0b8970nd09w4c09nhwyblcd"; depends=[]; }; @@ -7496,12 +7691,14 @@ in with self; { osi = derive2 { name="osi"; version="0.1.0"; sha256="1wzkvsqifk0g29jnpvykn26myq27pxll3glqlp74djkz0rbpv7aa"; depends=[httr]; }; osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmplotr = derive2 { name="osmplotr"; version="0.2.3"; sha256="1gvr3plni62hrs1i4b1id863ib0d4l4gfh8h40nyvk16mgvp4a4c"; depends=[curl ggm ggplot2 httr igraph osmar rgeos sp spatstat XML]; }; - osrm = derive2 { name="osrm"; version="3.0.0"; sha256="099k0cfkzzq5pdb17j9ian8x6s3i13f6lcyhy4ls0dnhdgk4d7l1"; depends=[bitops gepaf jsonlite raster RCurl rgeos sp]; }; + osrm = derive2 { name="osrm"; version="3.0.1"; sha256="0sz3fbdljfakh0g8bmsx6arwz7j2sjd63c4af1sryh9c8sk8gpjp"; depends=[gepaf jsonlite raster RCurl rgeos sp]; }; + otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; }; otrimle = derive2 { name="otrimle"; version="0.4"; sha256="0xhsx11rpm9179jm5p00x2c125r15bhslsnll182bhw282vwx2kx"; depends=[mclust prabclus]; }; ouch = derive2 { name="ouch"; version="2.9-2"; sha256="05c3bdxpjcgmimk0zl9744f0gmchhpm7myzjrx5fhpbp5h6jayaf"; depends=[subplex]; }; outbreaker = derive2 { name="outbreaker"; version="1.1-7"; sha256="0bq8an4hcs88279nkbn92x5s36i3sb64xqdlcrxy8fdk05w0cmg4"; depends=[adegenet ape igraph]; }; outbreaks = derive2 { name="outbreaks"; version="1.2.0"; sha256="1snycxcllc5vq93ay7xyjw6g4130dvcmja56wvdxixvc5bbv4z1d"; depends=[]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; + outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; overlap = derive2 { name="overlap"; version="0.2.7"; sha256="1v7i3p8mmhvnxd9h1g6zprphjgs2nfh7ffkyj7vjbkhfsixp9fpz"; depends=[]; }; overlapping = derive2 { name="overlapping"; version="1.4.0"; sha256="00rn55wvcj32qgjbjplaq32k2vxzrdlbp8dh7scyw78wyn8bdv2c"; depends=[ggplot2]; }; owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; }; @@ -7526,11 +7723,11 @@ in with self; { packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; }; packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; }; - packcircles = derive2 { name="packcircles"; version="0.1.1"; sha256="0xvw283gyjak3j66g8x5jy2jdrkcxwhfzck2wdq2q6a6nxbyb0i1"; depends=[Rcpp]; }; + packcircles = derive2 { name="packcircles"; version="0.2.0"; sha256="1z0s5lnzpmipcsdk0wsjp18mm6j50yfn8qip98rx30hmyh3flwmc"; depends=[Rcpp]; }; packrat = derive2 { name="packrat"; version="0.4.8-1"; sha256="1wvjyvb7yy6hq188msqzf8qa00lhll865jp939byc6d4zpscm0x2"; depends=[]; }; pacman = derive2 { name="pacman"; version="0.4.1"; sha256="0qh3nxgfn26q3mwv3zyc6qq4h00mjdjrn2pfbfmdbjqjg4q75ypz"; depends=[devtools]; }; paco = derive2 { name="paco"; version="0.3.1"; sha256="18k4ls6y9jdknx3dn2494chjigzn8hrsh332ha8a01snfzhp66m0"; depends=[plyr vegan]; }; - pacotest = derive2 { name="pacotest"; version="0.2"; sha256="1z8jiz951jj13dmgl75yjdvahph0jhk0d6n2f8xgzaj4rwmli6i8"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; + pacotest = derive2 { name="pacotest"; version="0.2.2"; sha256="0n17qzn7wabs6am55z96zg8759fdcz3vpm7yx25dyaqliawgqnj7"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; }; padr = derive2 { name="padr"; version="0.2.1"; sha256="18cv4pz8zkn2a4m85yz8k68clq1zfgb6y7f6skdsflhg05mxq2qs"; depends=[Rcpp]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; @@ -7547,7 +7744,7 @@ in with self; { paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; }; paleofire = derive2 { name="paleofire"; version="1.1.9"; sha256="0x11g90g6hlxw5407mmb6z4w7iqmipb5f0n3czs834ji5jhxl1x8"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; - paleomorph = derive2 { name="paleomorph"; version="0.1.3"; sha256="0s119va1j4sqmc08wrk1z1ywdvam0qcn6lgla93bavpw4q7y9zbm"; depends=[]; }; + paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; paleotree = derive2 { name="paleotree"; version="2.7"; sha256="0h2rch89p8n1i1zdy3xj5966hsz47a49r5baqvn1s9c9pr024czk"; depends=[ape phangorn phytools]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; @@ -7563,7 +7760,7 @@ in with self; { pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; - pangaear = derive2 { name="pangaear"; version="0.2.4"; sha256="0h504b4wnqahy3sq35yq48rafaikkidfqdx96hv8999ag7kyndl2"; depends=[httr jsonlite oai rappdirs tibble xml2]; }; + pangaear = derive2 { name="pangaear"; version="0.3.0"; sha256="1kkjvcwdnak5rxdz5q066b1q7yx75djm5q0gbx6iqcgvvhly1kpp"; depends=[httr jsonlite oai rappdirs tibble xml2]; }; papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; papeR = derive2 { name="papeR"; version="1.0-2"; sha256="1pp6zzdqg9lj61f8p90sxl30vp9knmis7154fmfpm6pynbgr46ms"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; @@ -7573,7 +7770,7 @@ in with self; { parallelSVM = derive2 { name="parallelSVM"; version="0.1-9"; sha256="0nhxkllpjc3775gpivj8c5a9ssl42zgvswwaw1sdhwg3cxcib99h"; depends=[doParallel e1071 foreach]; }; parallelize_dynamic = derive2 { name="parallelize.dynamic"; version="0.9-1"; sha256="03zypcvk1iwkgy6dmd5bxg3h2bqvjikxrbzw676804zi6y49mhln"; depends=[]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.2"; sha256="054l9hqsvgnwipzqrapkhsk67afz93zv1cligqhjl2wggzn9a8sc"; depends=[colorspace fields shiny shinydashboard TIMP]; }; - paramlink = derive2 { name="paramlink"; version="0.9-9"; sha256="1d2s20ys2zbbpw38l24j57p070h5wf4rgf3gb9lxgx1ibpww1zf0"; depends=[assertthat kinship2 maxLik]; }; + paramlink = derive2 { name="paramlink"; version="1.1-0"; sha256="1qbd80x50nnyiy0y6nnnwhj8z528gzqq7098w9md3rj0ih3523xl"; depends=[assertthat kinship2 maxLik]; }; params = derive2 { name="params"; version="0.6.1"; sha256="0w7k8k7z8p1y2w0dhpfssa868xaikfzfdjw2vlj1yl299k5yisax"; depends=[whisker]; }; paran = derive2 { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; }; parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; @@ -7586,14 +7783,14 @@ in with self; { parsedate = derive2 { name="parsedate"; version="1.1.3"; sha256="0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"; depends=[]; }; parsemsf = derive2 { name="parsemsf"; version="0.1.0"; sha256="0ijnnajcr7zyh0c1k6bz9qa4fkcly1fd44x3qj7mhlx58gnq4sa4"; depends=[dplyr lazyeval RSQLite stringr tidyr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; - partialAR = derive2 { name="partialAR"; version="1.0.5"; sha256="1d8nbv3rkf0p4vg8mlb1l5cqzgsqqhigwiq2bnd4npak6fq6syvg"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; + partialAR = derive2 { name="partialAR"; version="1.0.10"; sha256="18hw0azhvd3737wi5cy8ympwfrj6ag01w1a4csy6kl2kifldg6b7"; depends=[data_table FKF ggplot2 MASS plot3D Rcpp tseries urca zoo]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; }; partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; }; partitions = derive2 { name="partitions"; version="1.9-18"; sha256="1brzvk2zbrh0s4vbaiib6zkpcyx7ghc6ws36h3diz5nxbx3g95ik"; depends=[gmp polynom]; }; - partools = derive2 { name="partools"; version="1.1.5"; sha256="062rnq35cbzyr6mdpq4w88bxd6c2pzbghxan6j11pipyzvv7qsj3"; depends=[data_table pdist]; }; + partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; }; - party = derive2 { name="party"; version="1.2-2"; sha256="0rmvscgmbligg23djyph54cz5r8xkmmrn04vd3r7pwy1qarah9fi"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.2-3"; sha256="1rpp4qfb7igpqlz0jw12ykd7p3ri8miby6nlvyzbblz3h67lplkb"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.1-1"; sha256="0cl3ir54pafjhk1cvyzx1a8a244x0qa5lky47m7fx1fdj0k7dx6r"; depends=[Formula survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; pass = derive2 { name="pass"; version="1.0"; sha256="00dzwg2lnzmrrmzq3fyrs4axswgnsn7f62l2f2a8d8gyf8qzz3nf"; depends=[lars MASS ncvreg]; }; @@ -7607,11 +7804,13 @@ in with self; { patchSynctex = derive2 { name="patchSynctex"; version="0.1-4"; sha256="1li3kw7a77sx6dss8pnxzb0p0sdy1kfm1zdnmhhj043zihrryd5p"; depends=[stringr]; }; pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; }; pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; }; + pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; }; pathological = derive2 { name="pathological"; version="0.1-2"; sha256="07g7ps6zfxi98y98kwas95rr5ybfd4bpih5mhkjafc7bn99254n2"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_reflection assertive_strings assertive_types magrittr plyr stringi]; }; + patternize = derive2 { name="patternize"; version="0.0.1"; sha256="0xmz7ca555275a4x89vdmyk9x3m3sk964iwspv0dnxsmx5s1xmz7"; depends=[abind Morpho raster rgdal RNiftyReg sp]; }; patternplot = derive2 { name="patternplot"; version="0.1"; sha256="1k167vfwizwk6m0qpq9p0wq7y2g9ib6wi9j64wmvpqjw8k77l00r"; depends=[dplyr ggplot2 gtable jpeg png Rcpp RcppParallel]; }; pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; }; - pavo = derive2 { name="pavo"; version="1.0.0"; sha256="0xi9sb36xc6h8j4h4b46imwy936wi8vlqsv4mfkjka34bn0q7afr"; depends=[geometry mapproj rcdd scatterplot3d]; }; + pavo = derive2 { name="pavo"; version="1.0.1"; sha256="1kx83yxcrj2r1ahn74x5c6yadhyfqsjcj1w3idzdpqbad3vxh5wd"; depends=[geometry mapproj rcdd scatterplot3d]; }; pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; }; pbapply = derive2 { name="pbapply"; version="1.3-2"; sha256="1sdmjlnwxb99f95g5v8k8mirrkzw99yig377v0qi9lzwjgd6fqqr"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-9"; sha256="1p8rj0lzm4pp1svgy7xia2sclkngzfjbgbikq94s6v92d582wncw"; depends=[rootSolve survival]; }; @@ -7625,14 +7824,14 @@ in with self; { pbdSLAP = derive2 { name="pbdSLAP"; version="0.2-2"; sha256="0d7hj1rq4vmp9i4v7d3pjivqpw0pv06xjl4wlnjj42jfxdg70yvh"; depends=[pbdMPI rlecuyer]; }; pbdZMQ = derive2 { name="pbdZMQ"; version="0.2-5"; sha256="12qgnzhc0lkzmkg143y0wlvpsa0qqw1rmv7x8c67ixd4pbwzcym7"; depends=[R6]; }; pbivnorm = derive2 { name="pbivnorm"; version="0.6.0"; sha256="05jzrjqxzbcf6z245hlk7sjxiszv9paadaaimvcx5y5qgi87vhq7"; depends=[]; }; - pbkrtest = derive2 { name="pbkrtest"; version="0.4-6"; sha256="00cw18q7wvddzjrbxz917wkix6r7672vi2wmsp4gwgzady8vha4x"; depends=[lme4 MASS Matrix]; }; + pbkrtest = derive2 { name="pbkrtest"; version="0.4-7"; sha256="1si3bhi59xc51a0pgjjglccq3h4aljyhw2k1b8574s145fnh7fsw"; depends=[lme4 MASS Matrix]; }; pbmcapply = derive2 { name="pbmcapply"; version="1.2.1"; sha256="1dlpiphvl8rl08r7lml2mky137kahqij102wyjif1yk3xwdds8ca"; depends=[future]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pcIRT = derive2 { name="pcIRT"; version="0.2.2"; sha256="0sf6kkcsblc758sb1gkl4ryr72w0xhkd9nr4xdns8c9dfg9qcw1h"; depends=[combinat Rcpp]; }; pca3d = derive2 { name="pca3d"; version="0.10"; sha256="1bpm4sbj7h2fd0h5ybjhq8g61l8v2fbc92yiiascdgfili85zsf3"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; - pcaL1 = derive2 { name="pcaL1"; version="1.4.1"; sha256="07qsi3k6l9ga1ixqmz8sw1hmjqg0l3rv1czwwgb6izsmjkcxfyzd"; depends=[]; }; + pcaL1 = derive2 { name="pcaL1"; version="1.5.1"; sha256="0c5y595jyf0wz290hg06r8fxii2r3mwl9437wvs4fvv1sxi2i3r0"; depends=[]; }; pcaPA = derive2 { name="pcaPA"; version="2.0.2"; sha256="14hi09qksr1z54l268yv4g2x5hlikir7zir4ccd9yi5z1918ksj5"; depends=[ggplot2 ltm mc2d polycor sfsmisc]; }; pcaPP = derive2 { name="pcaPP"; version="1.9-61"; sha256="0afwi17grkac5yckipfsyqq1r1qgljzb3w5abc9mc6pzb7hrbhvx"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="3.0.4"; sha256="031ql3xppjkqrm17bvccj61hyf38skjb4qv6rs0l1h2ib8jql8ka"; depends=[ggplot2 MASS robust vcfR]; }; @@ -7644,26 +7843,26 @@ in with self; { pcnetmeta = derive2 { name="pcnetmeta"; version="2.4"; sha256="1d7cjf15blh0ysc064n8yil77yj799bsff0rdjvimaa2hbxpnk98"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; pcrcoal = derive2 { name="pcrcoal"; version="1.2.0"; sha256="0rd610ny8p7by3gi6kk130ii0qcswqsng5mzmxz8hrxqk0cs4c9x"; depends=[ape ggplot2 phylosim]; }; - pcrsim = derive2 { name="pcrsim"; version="1.0.1"; sha256="004xrxnfkq1a8y27p7v4xz7jf3y3h5fkxiy2vyqdqv2yqhqdbzpg"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; + pcrsim = derive2 { name="pcrsim"; version="1.0.2"; sha256="04177xl513k01prmf93kha91dyxmb9v80d1y4lz73fxsifj6bhar"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; }; pcse = derive2 { name="pcse"; version="1.9"; sha256="04vprsvcmv1ivxqrrvd1f8ifg493byncqvmr84fmc0jw5m9jrk3j"; depends=[]; }; pdR = derive2 { name="pdR"; version="1.5"; sha256="072ra8czfvgcgkbdfkjhbpk7f23zh717f9sh84vls9j0wyrai6hn"; depends=[boot car coefplot lmtest papeR plm sandwich]; }; pdSpecEst = derive2 { name="pdSpecEst"; version="1.0.0"; sha256="0jd7540v7zdg4l5i6i7pdwc7bgnpkhdfpf5b9bjx2gka592swhq4"; depends=[astsa Rcpp RcppArmadillo]; }; pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; }; - pdfetch = derive2 { name="pdfetch"; version="0.1.8"; sha256="0yg5s7nxfbsffi3v1layi7w7y3bcyb1lkyinr0ygnjz5cmqf3df0"; depends=[httr jsonlite lubridate readr reshape2 stringr XML xml2 xts zoo]; }; + pdfetch = derive2 { name="pdfetch"; version="0.2.1"; sha256="0d5707j4dq8ilab3ydqy3pd65mdsrwn6hf01hv4h85iv6zalm679"; depends=[httr jsonlite lubridate readr reshape2 stringr XML xml2 xts zoo]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="1.0"; sha256="1ziflvvzwk3g21s67b09qx023i2chvx09b0675nskvbxssnsc5r5"; depends=[Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="1.2"; sha256="1fdw0rqz2yi2xslydb3qigv915zp16h56gw8ar792hxwwf33kyh6"; depends=[Rcpp]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0"; sha256="1czpaghp2lcad4j6wxswdfw0n9m0phngy966zr4fr3ciqpx3q129"; depends=[mco]; }; pdolsms = derive2 { name="pdolsms"; version="0.2"; sha256="18gwr1xnm7jbqna911b7haa9sv1i2qvq18w00dkbnj796rh0h78f"; depends=[reshape2]; }; - pdp = derive2 { name="pdp"; version="0.4.0"; sha256="19kijpz0davv8359a0x623zjbq1jn5agp6wfx36yi87l2dlh254y"; depends=[gridExtra lattice magrittr mgcv plyr viridis]; }; + pdp = derive2 { name="pdp"; version="0.5.2"; sha256="1bsi8v143q4bmdzlx55q6xrhi1scm5bi7q8ky0mh1505kz09nd74"; depends=[boot dplyr ggplot2 gridExtra lattice magrittr mgcv plyr Rcpp viridis]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pear = derive2 { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-2"; sha256="0x8bnlzgmfah8lzdg8skxs7bm8yq0nkrhqi7q43h902j4jl5b8jy"; depends=[]; }; - pec = derive2 { name="pec"; version="2.4.9"; sha256="0r8fg4kic366606pdysyws4an3152fc8mykr7vwixhn63yjk0vpd"; depends=[foreach prodlim rms survival timereg]; }; + pec = derive2 { name="pec"; version="2.5.3"; sha256="16ad20zagf3sbnj6jw0ay4kkywlslgc7p5ghz5zknrsby7ac0147"; depends=[foreach prodlim rms survival timereg]; }; pedantics = derive2 { name="pedantics"; version="1.5"; sha256="0m5jxzkf1pf657q2klv6idnywg18ki962666nj7sfyl4rq06xhsi"; depends=[kinship2 MasterBayes MCMCglmm]; }; pedgene = derive2 { name="pedgene"; version="2.9"; sha256="1200d6blz7n3krnvhw0i9mz6219vwk0vlj17yzr3fqzyn5cyf91z"; depends=[CompQuadForm kinship2 Matrix survey]; }; pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; @@ -7706,7 +7905,7 @@ in with self; { pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; }; pgam = derive2 { name="pgam"; version="0.4.12"; sha256="0vhac2mysd053bswy3xwpiz0q0qh260hziw6bygpf83vkj94qf2v"; depends=[]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; - pgirmess = derive2 { name="pgirmess"; version="1.6.5"; sha256="0z3yxdcgngsyy9ylga76gh0m92vfdfzg4asgx6a3g0hnixh0pri3"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; + pgirmess = derive2 { name="pgirmess"; version="1.6.7"; sha256="1an7isajb4h04i2sfnssnxfi61v17fh803ddf8hmcfqkpig4yi6p"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; pglm = derive2 { name="pglm"; version="0.1-2"; sha256="1arn2gf0bkg0s59a96hyhrm7adw66d33qs2al2s0ghln6fyk8674"; depends=[maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2"; sha256="0f0wdcirjyxzg2139c055i035qzmhm01yvf97nrhp69h4hpynb2n"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; @@ -7716,7 +7915,9 @@ in with self; { ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; }; ph2mult = derive2 { name="ph2mult"; version="0.1.1"; sha256="0w3w18fkr9xzv6mpb00cz5id33zgsnl6s8zgjpchzvrhmpjpp437"; depends=[clinfun]; }; phalen = derive2 { name="phalen"; version="1.0"; sha256="0awj9a48dy0azkhqkkzf82q75hrsb2yw6dgbsvlsb0a71g4wyhlr"; depends=[sqldf]; }; - phangorn = derive2 { name="phangorn"; version="2.1.1"; sha256="1klc2s6crwmg30psgf1xkchyjqbksl7cdlnk3b0ypdw7pd3js5im"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; + phangorn = derive2 { name="phangorn"; version="2.2.0"; sha256="02r1b65d1v05bi62wmq0mr99dnbg7gfq4lca81blqa14yld1mj1j"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; }; + phantom = derive2 { name="phantom"; version="0.1.1"; sha256="0illb6akja10ij2pc7sfaz5yb43jkky28yclkijk3r31dv075ylk"; depends=[cluster gplots MASS Matrix NMF RColorBrewer Rcpp RcppArmadillo]; }; + phase1RMD = derive2 { name="phase1RMD"; version="1.0.5"; sha256="0qn3zpq7r810j54718ffqg53dr776vcswjr0icdah1yacwn8zf6f"; depends=[boot coda mvtnorm rjags]; }; phaseR = derive2 { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; }; phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; }; pheatmap = derive2 { name="pheatmap"; version="1.0.8"; sha256="1ik0k69kb4n7xl3bkx4p09kw08ri93855zcsxq1c668171jqfiji"; depends=[gtable RColorBrewer scales]; }; @@ -7725,19 +7926,19 @@ in with self; { phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; pheno2geno = derive2 { name="pheno2geno"; version="1.3.1"; sha256="1k1hw5qxrwxy502zkcfcz0nxjqmvdk1fgghjc512vq7x5znblz3v"; depends=[mixtools qtl VGAM]; }; - phenology = derive2 { name="phenology"; version="5.3"; sha256="1lw4blnv06w0czliqwpz34nz7nanfihcv04l72sxma7jjmjpn4w8"; depends=[coda fields HelpersMG zoo]; }; + phenology = derive2 { name="phenology"; version="5.4"; sha256="0i528yhmlyyinczhkymchhmmmd9x6xm94i2dnad834jcdhhhr44y"; depends=[HelpersMG lmf numDeriv optimx]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; phmm = derive2 { name="phmm"; version="0.7-5"; sha256="0dil0ha199yh85j1skwfdl0v02vxdmb0xcc1jdbayjr5jrn9m1zk"; depends=[lattice Matrix survival]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; }; phonics = derive2 { name="phonics"; version="0.7.4"; sha256="0s5v9w3dcscjc7snv4nlhd4zm2dhxwv9jp6xaxp5wpwys5mim1ms"; depends=[BH Rcpp]; }; - photobiology = derive2 { name="photobiology"; version="0.9.13"; sha256="14pziwhg87gbzc3yjhb5kvbcfd8v6mqa4r8l83nnxp2gkr0kl66s"; depends=[caTools dplyr lubridate plyr polynom splus2R tibble]; }; - photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.12"; sha256="02pfajd9wzbrlxsk29d5sdp2bnzjdw1g08rrl5742c6ha4dll81m"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl reshape2 tibble]; }; + photobiology = derive2 { name="photobiology"; version="0.9.14"; sha256="1zh36mdm7bprl0zfyl3qaill3s1aw7p0w5zwhmx08i2imxcz60jj"; depends=[caTools dplyr lubridate plyr polynom splus2R tibble]; }; + photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.13"; sha256="1zagvdaiv8d5frwki20wwvbyw4a9in3k8560janbmd161xh13ii0"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl reshape2 tibble]; }; photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.2"; sha256="0m8bwpvr3g0xdcpjg0pm5qp7b941y85gdzw24vc1nhfmzwd0lxn0"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.1"; sha256="19pzb12qisv5hy7rps0dp9bq8zanpyr2yn41i6rd8hk80fknjha6"; depends=[photobiology]; }; - photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.0"; sha256="1qdd2zbkdw601p5zcamd2ly0qp0hmnd32bdlnvpv96v90iwxpj9q"; depends=[photobiology photobiologyWavebands]; }; - photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.1"; sha256="07a2hw59k1a2knccijy82pb0f72y00s2wlc70b6snrgii45qgc23"; depends=[photobiology]; }; + photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.1"; sha256="0mpb5sv4wkvqzbhf193zkhap44yzlhxrnjx1p3j9iyjdg4bb1kka"; depends=[photobiology photobiologyWavebands]; }; + photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.2"; sha256="0l1784xi9hzsxmiqipv0zkb4lq1xd9f890rzsgsjb0km6js5x3q7"; depends=[photobiology]; }; phrasemachine = derive2 { name="phrasemachine"; version="1.0.0"; sha256="0jdz8imcry78shhbayhw7vpcx3kj8sfin3jl4fz5bb1ncdpcrpbj"; depends=[NLP openNLP quanteda stringr]; }; phreeqc = derive2 { name="phreeqc"; version="3.3.10"; sha256="0hcdjj1wgfknqf5yx50b9vz5f72siw4dslyvk2xbrfnwbzzz4qib"; depends=[]; }; phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; }; @@ -7746,7 +7947,7 @@ in with self; { phyclust = derive2 { name="phyclust"; version="0.1-18"; sha256="1avw6vx3fmzvk8iwc47jz014hxjn0mm8b941a9y1xyip11x0b6dd"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; phylin = derive2 { name="phylin"; version="1.1.1"; sha256="1hxmh5jgcz41bhmi8kvimw0b6m4p3yq85bh79hl7xbx2kshxmvzq"; depends=[]; }; - phyloTop = derive2 { name="phyloTop"; version="2.0.0"; sha256="14bsmq62afkzcnacjd8464krk5hnh1s54r6znlknnpyphy0g8xzk"; depends=[ape igraph NHPoisson phylobase]; }; + phyloTop = derive2 { name="phyloTop"; version="2.0.1"; sha256="1mwifnmq4zk83vj7886ndz6i3xa9dyxsz9p4b0ah53cdvbcqcspd"; depends=[ape igraph NHPoisson phylobase]; }; phylobase = derive2 { name="phylobase"; version="0.8.2"; sha256="0wspm8fv2lps2z6zhz3qrf3icad1mgpq4379gmbi3i614h25r5gp"; depends=[ade4 ape Rcpp rncl RNeXML]; }; phylocanvas = derive2 { name="phylocanvas"; version="0.1.0"; sha256="0h5cp37f2jzi30zpzyvd6h16592knkyp2jnvcdhhi37yhamzhgr6"; depends=[ape htmlwidgets magrittr phylobase]; }; phyloclim = derive2 { name="phyloclim"; version="0.9-4"; sha256="0ngg8x192lrhd75rr6qbh72pqijbrhrpizl27q0vr6hp7n9ch3zx"; depends=[ape raster]; }; @@ -7754,7 +7955,7 @@ in with self; { phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.5"; sha256="0bffqzba6kcv8jyya7pja10mjnklhihczljhmj8q0pdrmd6qgqp8"; depends=[ape]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; - phylopath = derive2 { name="phylopath"; version="0.2.2"; sha256="16r3m1bsfsfjvzl9k8ss197m1hvghlm62fwdrrm9zk6jc4fjc0cf"; depends=[ape DiagrammeR dplyr ggm ggplot2 igraph MuMIn nlme pbapply purrr tibble tidyr]; }; + phylopath = derive2 { name="phylopath"; version="0.2.3"; sha256="1vspb20vwikql32nvj5vrixyz85y7zhc5sdbng1ff8r7yn1l2mrx"; depends=[ape DiagrammeR dplyr ggm ggplot2 igraph MuMIn nlme pbapply purrr tibble tidyr]; }; phylosignal = derive2 { name="phylosignal"; version="1.1"; sha256="039sdb5cyijsrvj13xznr0j7vcp780lif62xk5x5hpzxvpg1wwgk"; depends=[adephylo ape boot igraph phylobase Rcpp RcppArmadillo RCurl]; }; phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; }; phylotate = derive2 { name="phylotate"; version="1.0"; sha256="0mpqxydz4xh7vf54szi11ckqzfmhaiwz9h8v3y1kslvarn8bvpr4"; depends=[]; }; @@ -7762,7 +7963,7 @@ in with self; { phyndr = derive2 { name="phyndr"; version="0.1.0"; sha256="03y3j4ik6flrksqm2dwh2cihn12hzfdik0fsak4zbxjdzaqn5gim"; depends=[ape]; }; phyreg = derive2 { name="phyreg"; version="0.7"; sha256="0saynhq4yvd4x2xaljcsfmqk7da2jq3jqk26fm9qivg900z4kf35"; depends=[]; }; physiology = derive2 { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; }; - phytools = derive2 { name="phytools"; version="0.5-64"; sha256="0vamljghwxrdgncwzg0217cw65f0gzn0bx72xxlmdw69wshhrj3m"; depends=[animation ape clusterGeneration coda combinat maps mnormt msm numDeriv phangorn plotrix scatterplot3d]; }; + phytools = derive2 { name="phytools"; version="0.6-00"; sha256="04xf7rksii496xiih3ijywxs4j4994z1f1yllvywzvmqqyk0khdn"; depends=[animation ape clusterGeneration coda combinat maps mnormt msm nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; pi0 = derive2 { name="pi0"; version="1.4-0"; sha256="0qwyfan21k23q4dilnl7hqjghzm8n2qfw21wbvnidr6n9hf2fjjs"; depends=[Iso kernlab limSolve LowRankQP Matrix numDeriv quadprog qvalue rgl scatterplot3d]; }; picante = derive2 { name="picante"; version="1.6-2"; sha256="1zxpd8kh3ay6f3gdqkij1a6vnkr98dc1jib2r6br2kjyzshabcsd"; depends=[ape nlme vegan]; }; @@ -7773,7 +7974,7 @@ in with self; { pinbasic = derive2 { name="pinbasic"; version="1.1.0"; sha256="0ncbgkpgzp6w856y7ab0drci92rc9mx0j900vxd8ir69c00cm348"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; }; pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; }; - pinnacle_API = derive2 { name="pinnacle.API"; version="1.92"; sha256="1a2s33sizg9q6iml56hbbs1c7hx5lz7v7hplhs0nv05vrh8cg9zm"; depends=[dplyr httr jsonlite RCurl rjson uuid XML]; }; + pinnacle_API = derive2 { name="pinnacle.API"; version="2.0.4"; sha256="1qdxx9mpnffb7nf8477bkc557lw7c34g0nkjspbn8mn40n5488r0"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; }; pipe_design = derive2 { name="pipe.design"; version="0.4"; sha256="00znnjqvppvn0qmrxkksiljgd51mf1x5zkmib43myckzwp5cap3i"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.1"; sha256="0ixfj52nd9785ny78wgsyq7srygsj3yg3p95pcb4lrrammchqygk"; depends=[]; }; pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; @@ -7781,13 +7982,15 @@ in with self; { pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; pirate = derive2 { name="pirate"; version="1.0.0"; sha256="160mmyqdwbc4g7n7q9i4xcqp6h9bcpcz7vavsgdcpvs2mjfhfpjx"; depends=[ggplot2 MASS plyr Rcpp RcppArmadillo]; }; pitchRx = derive2 { name="pitchRx"; version="1.8.2"; sha256="0lg0xab40r8wzrww986l5q9jkg1m83g4bhsbh0kr7f2rv90av662"; depends=[ggplot2 hexbin MASS mgcv plyr XML2R]; }; + pivottabler = derive2 { name="pivottabler"; version="0.1.0"; sha256="1fm8g4z2d3dmljk8r3cq0fh8bnkxpxqlkcvv95vdmirfjznrwr1x"; depends=[dplyr htmltools htmlwidgets jsonlite R6]; }; pixiedust = derive2 { name="pixiedust"; version="0.7.4"; sha256="1v4biqbs18x7a8li85zqk8pwd4bxirvda6nrws8pyz0g77j74nj4"; depends=[broom checkmate dplyr Hmisc htmltools knitr lazyWeave magrittr stringr tidyr]; }; pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; }; - pkgconfig = derive2 { name="pkgconfig"; version="2.0.0"; sha256="1wdi86qyaxq1mwkr3nrax3ab7hhj2gp1lbsyqnbcc9vzg230nh0r"; depends=[]; }; + pkgconfig = derive2 { name="pkgconfig"; version="2.0.1"; sha256="0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"; depends=[]; }; pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.22"; sha256="0vrqnd3kg6liqvpbd969jjsdx0f0rvmmxgdbwwrp6xfmdg0pib8r"; depends=[codetools digest registry stringr xtable]; }; pkmon = derive2 { name="pkmon"; version="0.9"; sha256="1zcjz1h45qv81rwnjsgc9iwmrwpnsy917y7h66pz98wzszlxcsd2"; depends=[]; }; + pkr = derive2 { name="pkr"; version="0.1.0"; sha256="0c8i9r1w23zldi04066pzdggxrbsqg9ydbxg3ig1z66jv17w76zq"; depends=[binr foreign forestplot]; }; pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; pla = derive2 { name="pla"; version="0.2"; sha256="1qb71zjcxvs3zbfy0sryyxizwix0nw530zsfw661a8vm8sk054kw"; depends=[]; }; @@ -7806,6 +8009,7 @@ in with self; { plfMA = derive2 { name="plfMA"; version="1.0.3"; sha256="10cb12kxzh9ymzk59d310wqn213d8syp8a4rd5ayzkp9wlf3lksn"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma]; }; plfm = derive2 { name="plfm"; version="2.1"; sha256="19l5n7syp6xcj4d5qxccsard70d5q8ph1f87prj2zgpq5spyp7an"; depends=[abind sfsmisc]; }; plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; }; + plink = derive2 { name="plink"; version="1.5-0"; sha256="0zn5k7p14ls38rwfhr8xn18316qzmxvgqj63pf3dbf6dddnbkapl"; depends=[lattice MASS statmod]; }; plm = derive2 { name="plm"; version="1.6-5"; sha256="00zipzxg1d8w6ih586hlqv6bkyn5d01ppik8z35by3r1q6rlkpx2"; depends=[bdsmatrix car Formula lattice lmtest MASS nlme sandwich zoo]; }; plmDE = derive2 { name="plmDE"; version="1.0"; sha256="19xxi0zzpxcrsdrbs0hiwqgnv2aaw1q3mi586wv27zz6lfqcr9lr"; depends=[limma MASS R_oo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; @@ -7838,7 +8042,7 @@ in with self; { plspm = derive2 { name="plspm"; version="0.4.7"; sha256="0iy4qw4zjgqxg93a827qjcm32yipmnrl4gzn4hmskjd4khm9ngwd"; depends=[amap diagram shape tester turner]; }; plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; }; plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; }; - pltesim = derive2 { name="pltesim"; version="0.1.1"; sha256="0xqvs4lax8r2avwpdpf4p49dkwghiqbqc93brz7l1qma6ih0yfrs"; depends=[coreSim ggplot2]; }; + pltesim = derive2 { name="pltesim"; version="0.1.2"; sha256="00iyxs4r5y08ss6q0yb6b1gq100xdx6zxksw0zmqxydj0sh64q2v"; depends=[coreSim ggplot2]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; plumber = derive2 { name="plumber"; version="0.3.1"; sha256="0li34ldwc8qi7jg37pqaa4b5ql6ybci9a3wh2a48gb8nyb380r2b"; depends=[httpuv jsonlite R6 stringi]; }; plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; @@ -7848,6 +8052,7 @@ in with self; { pmc = derive2 { name="pmc"; version="1.0.2"; sha256="1pamxg2cwyg36w0xnggrv5w03lb12l25z2da7xm1jvr17h0ipqmh"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.1-9"; sha256="1p506d3gs0i46zjdia0pc71wwfv6nrfkmk5qaan5sdz6vn24zjhj"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; }; + pmfdR = derive2 { name="pmfdR"; version="1.0"; sha256="1h5dq84pm3ls4kz56l96p5h91njirkxm64jr4pc3m7mjzj9ajfdf"; depends=[curl exams stringr]; }; pmg = derive2 { name="pmg"; version="0.9-43"; sha256="0i7d50m4w7p8ipyx2d3qmc54aiqvw0ls8igkk8s1xc7k8ympfqi6"; depends=[foreign gWidgets gWidgetsRGtk2 lattice MASS proto]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.0.0"; sha256="0r1yw65ixm3zjpiwg800rfwr1p26i6apv4332pgfl84hj5vvp3ws"; depends=[mvtnorm Quandl]; }; pmlr = derive2 { name="pmlr"; version="1.0"; sha256="1z3hbw4wabpai1q8kbn77nzxqziag8y04cidlfiw7z969s4pkmgl"; depends=[]; }; @@ -7871,25 +8076,25 @@ in with self; { poistweedie = derive2 { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; }; polidata = derive2 { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; }; poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; }; - pollen = derive2 { name="pollen"; version="0.50.0"; sha256="1f6bjh7vkwyma8jzigdcijazmzr2mhnmwmaf135lx81d044xj2zr"; depends=[dplyr lubridate purrr]; }; + pollen = derive2 { name="pollen"; version="0.52.00"; sha256="1d1rr7rzc7lppw562lrn4n9syzgff21ws32s501g85f1zllkip5y"; depends=[dplyr lubridate purrr]; }; pollstR = derive2 { name="pollstR"; version="2.0.0"; sha256="0lcxhi1mazs8nh9hbbqyqx4axn5lji5fnp0kxrjwjxmzf59nksj8"; depends=[httr lubridate purrr stringr]; }; - polmineR = derive2 { name="polmineR"; version="0.7.1"; sha256="189zfqcw9w1i1z14l2rgkzqali0arkiq7k770xhzdrahw1whcsc7"; depends=[data_table DT foreach Matrix R6 slam tm]; }; + polmineR = derive2 { name="polmineR"; version="0.7.2"; sha256="1frfjwqkdpjk0fl1ldh8zdvk38yyx8hnwsrn0cph7y8qhy6v9sfq"; depends=[data_table DT foreach Matrix R6 slam tm]; }; polspline = derive2 { name="polspline"; version="1.1.12"; sha256="0chg5f6fq5ngjp1kkm4kjyxjc3kk83ky2ky5k7q3rhd8rkhd4szw"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.5-2"; sha256="1j28ia53za3sh9q7q1g5bnmlb5mbzf44bcwzv0919lvkw01f2lvj"; depends=[sp spatstat]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-4"; sha256="05kvj475zhlrmp7rm691cfs28igp4ac2cn2xxf7axx09v1nq33db"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-3"; sha256="1y4kzb1p3aw7ng8mv1hszpvb5hwwxy4vg34mhhk705ki4jy8jgvp"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; - polyapost = derive2 { name="polyapost"; version="1.4-2"; sha256="0nr8mw0k79kz5zd1k81kz0i940vmlzqqscn1z1yaik0rx8i7mhs7"; depends=[boot rcdd]; }; + polyapost = derive2 { name="polyapost"; version="1.4-3"; sha256="1bzrc06llzr36zmvm9f5czfy5rdrspamqwqc3n3m8x08v4ch3y4y"; depends=[boot rcdd]; }; polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; }; - polyclip = derive2 { name="polyclip"; version="1.5-6"; sha256="1ypwvgd5z61md539z7ndmpl8vaifsjbm231n08zsxskskj1fid7y"; depends=[]; }; + polyclip = derive2 { name="polyclip"; version="1.6-1"; sha256="07xxw5ik30ds18kv808hynzmz3w351k6lj4ifz9kak0s7xsaqfn3"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; }; polysat = derive2 { name="polysat"; version="1.6-0"; sha256="180hf1m2pd9jcz02q0jq3s5sv5h73qc20w3b2sx1psdbyzdk9006"; depends=[]; }; polywog = derive2 { name="polywog"; version="0.4-0"; sha256="0wl9br0g4kgi3nz2fq28nsk6fw0ll0y715v4vz8lv3pvfwc7518j"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; - pomp = derive2 { name="pomp"; version="1.11"; sha256="1z66q3l1p7dmds0160w93q31hsxq4fj7bwfyd74d166yg0wfia8x"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; - pooh = derive2 { name="pooh"; version="0.3-1"; sha256="0fn711jyn18byfc2nq3y154k8rb39vpnfw1a0xw73pqp1cwd2i73"; depends=[]; }; + pomp = derive2 { name="pomp"; version="1.12"; sha256="1fvzd68pc1lhxikc16f6a0lhyf66rj54if80icfvx6z3zvqc5dgw"; depends=[coda deSolve digest mvtnorm nloptr subplex]; }; + pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; }; popEpi = derive2 { name="popEpi"; version="0.4.1"; sha256="0n4kf3h6zgr7sc2bk8bbrf5bvaybnacy6vsqck63gfdn3kkc43m2"; depends=[data_table Epi survival]; }; @@ -7900,7 +8105,7 @@ in with self; { popdemo = derive2 { name="popdemo"; version="0.2-3"; sha256="0r3qdvwjwqzqxk3zp9vfzxwmc5fhjzn0ka91b37g62nanwxiyayw"; depends=[expm]; }; popgraph = derive2 { name="popgraph"; version="1.4"; sha256="1z6w6vj3vl2w10hvzwmkw4d475bqcd6ys92xnn445ag6vpq0cvxq"; depends=[ggplot2 igraph MASS Matrix sampling sp]; }; poplite = derive2 { name="poplite"; version="0.99.17.3"; sha256="0fqkwxlzj92rh187wns7zrygsgch1gw3l8kmnpvc59gdbk1wbbi7"; depends=[DBI dplyr igraph lazyeval RSQLite]; }; - poppr = derive2 { name="poppr"; version="2.3.0"; sha256="0zhmsx23fjjl8zy7s0gyzd0br4imdl2hfgk0g9v9p2ff72xg046d"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn reshape2 shiny vegan]; }; + poppr = derive2 { name="poppr"; version="2.4.1"; sha256="05nds9srzkmdi33xfq3lfmyjirn8x3nacpkq1jymf6kzab0sgn8v"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn reshape2 shiny vegan]; }; popprxl = derive2 { name="popprxl"; version="0.1.3"; sha256="1l842zgn04s8ghbcp8s2lzg7lgc809xd7hg9crnyp23c2cr0jlvi"; depends=[poppr readxl]; }; popsom = derive2 { name="popsom"; version="4.0.1"; sha256="1qw6b00mz9i842askixc0288i41v8dfjwc58pa3cbgf6fhfjva9z"; depends=[class fields som]; }; poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; }; @@ -7909,7 +8114,7 @@ in with self; { portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; }; portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; }; postGIStools = derive2 { name="postGIStools"; version="0.2.1"; sha256="1dmf77xpy61pqis3j9qzjjksmm9hkyhzxqdmjajpj7rkbqhl5qvp"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; - potts = derive2 { name="potts"; version="0.5-4"; sha256="1818md2mdkf47r5vcqawnn84lanir9q6r72kf41lq4zbjkk2yazv"; depends=[]; }; + potts = derive2 { name="potts"; version="0.5-7"; sha256="194996wr4rnpr42xqfi5yrcnxvd82all2fxki95dklr2qfjxg98a"; depends=[]; }; poweRlaw = derive2 { name="poweRlaw"; version="0.70.0"; sha256="1p2la3hslxq2xa8jkwvci6zcpn47cvyr9xqd5agp1riwwp2xw5gh"; depends=[VGAM]; }; powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; }; powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; @@ -7928,7 +8133,7 @@ in with self; { pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; }; prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; prabclus = derive2 { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; }; - pracma = derive2 { name="pracma"; version="1.9.9"; sha256="1g062d9lsjkqrd5m91h55pc3zcqha9drmdi4zqic4hx6qyyhy2q1"; depends=[quadprog]; }; + pracma = derive2 { name="pracma"; version="2.0.4"; sha256="1z3i90mkzwvp9di17caf4934z2xlb2imm3hwxllcrbwvmnmhrwyc"; depends=[quadprog]; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; prais = derive2 { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; @@ -7936,13 +8141,13 @@ in with self; { prc = derive2 { name="prc"; version="2015.6-24"; sha256="0sf664zqcq6xylhd7rvm2l2xj3f4j6llaj7j4b4847wfxnas2j02"; depends=[kyotil nlme]; }; prcbench = derive2 { name="prcbench"; version="0.6.2"; sha256="1dg4d5x7w368bllgblp1c9kahv9dd43vdfxvv8i3c9nz003z84bs"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; - prcr = derive2 { name="prcr"; version="0.1.0"; sha256="0bm1jixkdz682721j78kigs6v6dyckj4va41ik4f94ikb5j2f7hh"; depends=[dplyr ggplot2 tibble tidyr]; }; + prcr = derive2 { name="prcr"; version="0.1.1"; sha256="1c6l8szjy9rd7gyjwpfsydi493is6nn93yiq9my097lla961254i"; depends=[dplyr ggplot2 tibble tidyr]; }; pre = derive2 { name="pre"; version="0.1"; sha256="1y9mz0rp1rf595n8b2fy6rncrw7d41d8vlxi6phclfdawv9bkn9z"; depends=[Formula glmnet MatrixModels partykit]; }; preText = derive2 { name="preText"; version="0.4.4"; sha256="0ivzm9mcwnf9yrgvwzjiaqkpfv8fr7v8ci61gn8x09jiw8w8l5j4"; depends=[cowplot ecodist ggplot2 gridExtra proxy quanteda reshape2 topicmodels vegan]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; - precrec = derive2 { name="precrec"; version="0.6.2"; sha256="100zr5932vm1rs359nzq4cxbx924az5d8zl9h7720fd5sgy4av7f"; depends=[assertthat ggplot2 gridExtra Rcpp]; }; + precrec = derive2 { name="precrec"; version="0.7.1"; sha256="09b5718f3j0v3mkjq07lnyav935ggp2j1466v60b5ndn736bl3yx"; depends=[assertthat ggplot2 gridExtra Rcpp]; }; predatory = derive2 { name="predatory"; version="1.1"; sha256="18nv8riw380acvgb8iz771wzdgrmkrwcvdxbxhkbczcdhgw1p0ig"; depends=[readr stringr]; }; - prediction = derive2 { name="prediction"; version="0.1.10"; sha256="1za32spd6qg63mi5dvkw54k24f5s4a10p2rkfgzjzqxjb9rd265h"; depends=[]; }; + prediction = derive2 { name="prediction"; version="0.2.0"; sha256="09jlwk3fh7lkka9vsbr0bp7bpaf2p7q96qb8mv56rcmfrsf5446c"; depends=[]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; @@ -7954,12 +8159,12 @@ in with self; { preproviz = derive2 { name="preproviz"; version="0.2.0"; sha256="0jb85qkzywsd2iyfynd8ngkc136m4qc38phc3fgxm2qw30dacmyh"; depends=[caret ClustOfVar DMwR ggdendro ggplot2 gridExtra randomForest reshape2]; }; prereg = derive2 { name="prereg"; version="0.2.0"; sha256="098352svjdf8cfmb9qwbv71xb4irxcr70r06bvnqdv5bliq9fzin"; depends=[rmarkdown]; }; presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; }; - preseqR = derive2 { name="preseqR"; version="3.0.0"; sha256="07pwqn985dg5kjx65gfgcyg1nywjpxaswa7i6nsr8h0cr7a2mc9j"; depends=[polynom]; }; + preseqR = derive2 { name="preseqR"; version="3.0.1"; sha256="1lbcczp17fc690mxfvvpn4iyrxhjh5g32x3860g3yrcyx81sayir"; depends=[polynom]; }; prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; }; prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; }; prettycode = derive2 { name="prettycode"; version="1.0.0"; sha256="1zba83b5sk8jyag8jz8gipn6qpxwfsfg1xcxamfvpmzjicajzhbx"; depends=[crayon withr]; }; prettydoc = derive2 { name="prettydoc"; version="0.2.0"; sha256="1zpvi4lyjazhj2h6m3j46x93s9c2300xqylaqy6gp1yjn9im36dp"; depends=[rmarkdown]; }; - prettymapr = derive2 { name="prettymapr"; version="0.1.5"; sha256="1mccqidbnyl31wzbf5ly8qv23v6zha1chqna59j97cc2m3rhkqdf"; depends=[digest foreach rgdal rjson sp]; }; + prettymapr = derive2 { name="prettymapr"; version="0.2.1"; sha256="1839zhc4s9pkl6fq0jd613cbyrwj4a9h04r9c5ki3jkcwi3w80jq"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; }; prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; @@ -7970,6 +8175,7 @@ in with self; { primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; }; princurve = derive2 { name="princurve"; version="1.1-12"; sha256="19fprwpfhgv6n6ann978ilwhh58qi443q25z01qzxml4b5jzsd7w"; depends=[]; }; prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; }; + prioritylasso = derive2 { name="prioritylasso"; version="0.1.0"; sha256="1mn7ywn8barxka119khiv9vxz81rqcjiz09960skwnnw9mksxnak"; depends=[glmnet survival]; }; prism = derive2 { name="prism"; version="0.0.7"; sha256="03z1m09vf2gd277xp3y5nhvgrp0fnbr2x0r9b92kp46ca09fq9y8"; depends=[ggplot2 httr raster]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; prob = derive2 { name="prob"; version="1.0-0"; sha256="0gnp3q3dm176c1n7vdgisv3p11m2jk1hiza1yi8qaqyd9mfh86bg"; depends=[combinat fAsianOptions]; }; @@ -7979,7 +8185,7 @@ in with self; { proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; }; prodigenr = derive2 { name="prodigenr"; version="0.3.0"; sha256="1217l9r012xrgzna1bf9z31n2gw36h6grga3949kg7ghxrzjbm4q"; depends=[devtools]; }; - prodlim = derive2 { name="prodlim"; version="1.5.9"; sha256="0hkv3y0j8crssvw7ck7m4vhzkwsbwl1nwsyjdmzjw42pdj448dl5"; depends=[KernSmooth lava Rcpp survival]; }; + prodlim = derive2 { name="prodlim"; version="1.6.1"; sha256="0m51rkivx1zr6whdqwj66jpnkmp4385m06kkha3dp8qqf4jna9iz"; depends=[KernSmooth lava Rcpp survival]; }; productivity = derive2 { name="productivity"; version="0.1.0"; sha256="0hbysja40yv5ssiq4c3dn5bwypjhjdf1g3x56zms2ck78sk75zxk"; depends=[doParallel foreach Rglpk]; }; productplots = derive2 { name="productplots"; version="0.1.1"; sha256="1igs6d0qwgsfk0z3vxabgv5kva9w2kpzi535gjfdrbx34j4pf3gx"; depends=[ggplot2 plyr]; }; prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; }; @@ -7995,12 +8201,12 @@ in with self; { prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; progress = derive2 { name="progress"; version="1.1.2"; sha256="1fxakchfjr5vj59s9sxynd7crpz97xj42438rmkhkf3rjpyspx59"; depends=[prettyunits R6]; }; proj4 = derive2 { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; }; - prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.1"; sha256="0zrz0rywhmb4n3my9ihf070rpmd3xni59rr4dsl1ahq9lkd97h20"; depends=[rootSolve]; }; + prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; }; propOverlap = derive2 { name="propOverlap"; version="1.0"; sha256="0q72z9vbkpll4i3wy3fq06rz97in2cm3jjnvl6p9w8qc44zjlcyl"; depends=[Biobase]; }; propagate = derive2 { name="propagate"; version="1.0-4"; sha256="18vyh4i4zlsmggfyd4w0zrznk75m84k08p1qa9crind04n5581j1"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-8"; sha256="1x7zln1indckl090p9kv40snamkac3b8q45387jdqxajmsallxmb"; depends=[]; }; - prophet = derive2 { name="prophet"; version="0.1"; sha256="0bpkpl0wpvhlcrk5z0fv7ra7l7yxdkbgzlxp99h88ilnad49hh5d"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr zoo]; }; - propr = derive2 { name="propr"; version="2.1.2"; sha256="1qymykn6jgbs7pfnm1and8l87m8wyhqfnr1cx1jd1ghw8avniixl"; depends=[fastcluster ggplot2 Rcpp]; }; + prophet = derive2 { name="prophet"; version="0.1.1"; sha256="1knkkm3ai91rcak5c5199gjqazq3db8202knk7b846w0n4f77hn3"; depends=[dplyr extraDistr ggplot2 Rcpp rstan scales tidyr zoo]; }; + propr = derive2 { name="propr"; version="2.2.0"; sha256="084p7wxgg4dlphzydgn51wrq2dik0yqb0qax0bl992r78qalak4b"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.2.28"; sha256="1jnc2picmip1681pw9g9l1p7di65mvr10dybqdl0l9gidchn5p0n"; depends=[Rcpp]; }; proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; @@ -8009,7 +8215,7 @@ in with self; { proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive2 { name="protoclust"; version="1.5"; sha256="03qhqfqdz45s8c1p8c6sqs10i6c2ilx4fz8wkpwas3j78lgylskg"; depends=[]; }; - protolite = derive2 { name="protolite"; version="1.5"; sha256="0x25zcw3ayy0rl0sshd0iisaka25xx0sf6fjzlg26ssqjxhzv2f9"; depends=[jsonlite Rcpp]; }; + protolite = derive2 { name="protolite"; version="1.6"; sha256="10ly0rscpmgdakzlr27h6d78d6ixvrh76xcyx68caffr3zydlfyq"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.2-1"; sha256="08431v94p6c4sw2yqm6jc2v20kdgp5gn8kbl40am875z4a9q7c76"; depends=[]; }; @@ -8034,9 +8240,9 @@ in with self; { pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; }; psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; - psych = derive2 { name="psych"; version="1.6.12"; sha256="0ijz9gcc52byzmrw4iz976lgayp1wmn5b9v36bras14fwlwri0ky"; depends=[foreign mnormt]; }; + psych = derive2 { name="psych"; version="1.7.3.21"; sha256="1sncah07ms8ss2hgqqfgg1k023kgvys5hhyyhiw42zq99kapnwc9"; depends=[foreign lattice mnormt nlme]; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; - psychomix = derive2 { name="psychomix"; version="1.1-3"; sha256="15lz6rh3101pxsam07zlgiryyzmf8m16mxnh1fsgdnz8bw0li9g7"; depends=[flexmix Formula lattice modeltools psychotools]; }; + psychomix = derive2 { name="psychomix"; version="1.1-4"; sha256="15yk3z11w4bzk6vljr13bkfhzycypww6blc1djb5iwl635xq1c49"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychotools = derive2 { name="psychotools"; version="0.4-2"; sha256="04p5yb39c8j28q6brqsrw0dr1zvgpyzb7008v2kk3d5sncgl4dd0"; depends=[]; }; psychotree = derive2 { name="psychotree"; version="0.15-1"; sha256="1awavyzblh4s0v15kv52sq5dpalg5p0fp7ih46jxppm1srdxsz41"; depends=[Formula partykit psychotools]; }; psyphy = derive2 { name="psyphy"; version="0.1-9"; sha256="1ndc6sy662wj2qfx7r97crlqjd8fdkfvfy59qmf34bcbzbg33riz"; depends=[]; }; @@ -8044,7 +8250,7 @@ in with self; { ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.4"; sha256="1jbj8z7lqg7w1mqdh230qjaydx2yb6ffgkc39k7dx8xl30g00i5b"; depends=[misc3d]; }; ptstem = derive2 { name="ptstem"; version="0.0.3"; sha256="0dasfqkrd5dkqr1wbg56qrpkyjcb0lcdfcgz5mbxbhs478gf0nwj"; depends=[dplyr hunspell magrittr rslp SnowballC stringr tidyr tokenizers]; }; - ptw = derive2 { name="ptw"; version="1.9-11"; sha256="0vh5xv26l27pbx1g9xrj4vcv2bv75cjxs3zf5zcalrnga2lhbdjw"; depends=[nloptr]; }; + ptw = derive2 { name="ptw"; version="1.9-12"; sha256="111b0s66p7fk6z6bnm3wckpfjxr1gshv0rqqy5wy6qg60hp7bcfd"; depends=[nloptr]; }; ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; }; ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; }; pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.8"; sha256="0vr7r63i7xq6iqik4zdxjf78pfmsppnp4d9lmc6p1c19l9fcgljy"; depends=[boot R2HTML RCurl XML]; }; @@ -8061,7 +8267,7 @@ in with self; { pvrank = derive2 { name="pvrank"; version="1.1.1"; sha256="07pk7xvvg51i30kzf0cyj6qa38gmdf32c2c2ljbhp95ldk4j07mi"; depends=[EnvStats Rmpfr]; }; pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pweight = derive2 { name="pweight"; version="0.0.1"; sha256="0pxxfrap1bmnhbfbmkddfbqwkpw42hq37s0y26zmkxqlx4wblira"; depends=[qqman]; }; - pwr = derive2 { name="pwr"; version="1.2-0"; sha256="1zpyd8ij93w0c27v4i68y869sj8hw30prppaxq0iprgf3d72qf6r"; depends=[]; }; + pwr = derive2 { name="pwr"; version="1.2-1"; sha256="0k3jzx7jjgzha3vkpknj9nvx4yqlc9rq0mw25shvzi0xbr1y2cdb"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; }; pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; }; @@ -8070,22 +8276,23 @@ in with self; { pxweb = derive2 { name="pxweb"; version="0.6.3"; sha256="106nb0a3v295cam8ixhdwpgjhwq8p71c2z5c49s6xnqwmf6rbd0h"; depends=[data_table httr plyr RJSONIO stringr]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; }; - pystr = derive2 { name="pystr"; version="2.0.0"; sha256="08a20ii7h97qvyzqndbf3rdmnyr04g8h9lrs6qw193p1p41dl94w"; depends=[Rcpp]; }; + qGaussian = derive2 { name="qGaussian"; version="0.1.4"; sha256="00dn6cxix1yhaz877g240i1rkk9j6f3ys5hj41l9rvwsq95ayi5h"; depends=[robustbase zipfR]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; }; qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; }; qap = derive2 { name="qap"; version="0.1-1"; sha256="0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"; depends=[]; }; qat = derive2 { name="qat"; version="0.74"; sha256="04n1jnbkf9dzafjh1n5d4q9p7hvyhnr63nmgl51jqxcf3nan5rlx"; depends=[boot fields gdata gplots moments ncdf4 XML]; }; + qboxplot = derive2 { name="qboxplot"; version="0.1"; sha256="1izihjcdwj5y90fmr97wbp2qswszjpb28cv0cf3gl57pypbq5vq2"; depends=[]; }; qcc = derive2 { name="qcc"; version="2.6"; sha256="0bsdgpsqvkz2w1qanxwx8kvrpkpzs9jgw8ml2lyqhmhqbxyg125r"; depends=[MASS]; }; qclust = derive2 { name="qclust"; version="1.0"; sha256="0cxkk4lybpawyqmy5j6kkpgm0zy0gyn3brc1mf9jv8gmkl941cp3"; depends=[mclust mvtnorm]; }; qcr = derive2 { name="qcr"; version="1.0"; sha256="1251naica44kccmikyzdi3ncxfmvyqbc4qspfqnc0w54cqpsy5rw"; depends=[fda_usc MASS mvtnorm qcc qualityTools]; }; qdap = derive2 { name="qdap"; version="2.2.5"; sha256="13isxmi9vknl5c71434r16j301i86zpbzcqch8hiay51x3wbf2f0"; depends=[chron dplyr gdata gender ggplot2 gridExtra igraph NLP openNLP plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reports reshape2 scales stringdist tidyr tm venneuler wordcloud xlsx XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.6"; sha256="1icivvsi33494ycd7vfqm9zx2g2rc1m3dygs3bi0ndi798z1cvx2"; depends=[]; }; - qdapRegex = derive2 { name="qdapRegex"; version="0.6.0"; sha256="0k6n3zr07ccr9xlmkyg6m0pp7plh91066b61zrn7jphgs0d31c0a"; depends=[stringi]; }; + qdapRegex = derive2 { name="qdapRegex"; version="0.7.2"; sha256="1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.1"; sha256="0sfzqmds888r599mwm7j0qjsqfv6z59p4apmmg36hsyaxmw51233"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.0"; sha256="067wnwwz8s0yxig13wrjq37w62kf8p5pa8my5lfpc1ik1b7iysby"; depends=[Rsolnp]; }; - qgraph = derive2 { name="qgraph"; version="1.4.2"; sha256="1pp3dwrmp7j4rv0djbypnwjb26gji5fhqw4iwqbnxyi86m47z7z7"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; + qgraph = derive2 { name="qgraph"; version="1.4.3"; sha256="1ymgi1ls2q22rwx1hv3h6flgfjx5l2dbmzh804jlq68wh8xf496j"; depends=[colorspace corpcor d3Network ellipse fdrtool ggm ggplot2 glasso gtools Hmisc huge igraph jpeg lavaan Matrix plyr png psych reshape2 sem sna]; }; qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; qicharts = derive2 { name="qicharts"; version="0.5.4"; sha256="0lq9faksp18mgb6pa7qhbm9frd6f4675623d797snvnm67aiy8fa"; depends=[ggplot2 lattice latticeExtra scales]; }; @@ -8095,16 +8302,16 @@ in with self; { qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.5"; sha256="0fm49iydbjp264h9mkk8qfblbvg4l3bfcnphxyhcv3n27m0w44sf"; depends=[Matrix slam]; }; qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; }; qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; - qmethod = derive2 { name="qmethod"; version="1.5"; sha256="1j2i3m55vvs6l9fc8sdnp84a5yndcihz8sz49a7gd6sarr55ily4"; depends=[digest GPArotation knitr psych xtable]; }; + qmethod = derive2 { name="qmethod"; version="1.5.2"; sha256="1snllw82cijl7qgmgkn2x1k3x43x0hxbvh5mx5sffrma9kkv2fii"; depends=[digest GPArotation knitr psych xtable]; }; qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; qpcR = derive2 { name="qpcR"; version="1.4-0"; sha256="029qhncfiicb3picay5yd42g6qi0x981r6mgd67vdx71cac9fp59"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; - qqman = derive2 { name="qqman"; version="0.1.2"; sha256="024ln79hig5ggcyc3466r6y6zx2hwy2698x65cha5zpm51kq1abs"; depends=[]; }; + qqman = derive2 { name="qqman"; version="0.1.4"; sha256="1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s"; depends=[calibrate]; }; qqtest = derive2 { name="qqtest"; version="1.1.1"; sha256="08vfpbrgvyhv1w0gqmys9zkhfxh85sk74ig5fn12ma2p87zv7r5l"; depends=[robust]; }; qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; }; - qrLMM = derive2 { name="qrLMM"; version="1.1"; sha256="1yg9ph6jy0sn4d82vn4v7yy3mqczbnzsq8qqp9dw38vh2456rmf2"; depends=[ghyp matrixcalc mvtnorm nlme psych quantreg]; }; - qrNLMM = derive2 { name="qrNLMM"; version="1.3"; sha256="046xzzyrjaqa8sa7pxf4mhi1q5pdhvsn5z8gid0cypb0z140ia85"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; + qrLMM = derive2 { name="qrLMM"; version="1.3"; sha256="1k85d09yvhx3pgmvqrsmhd14hqaah4pdr87vp4kg60dp9w5sydjz"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; + qrNLMM = derive2 { name="qrNLMM"; version="1.4"; sha256="0h1jra247flipv4pwww8rn61pj8jxpiaw74f2czs950klnznp1xm"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; }; qrage = derive2 { name="qrage"; version="1.0"; sha256="00j74bnkcpp0h8v44jwzj67q9aaw47ajc2fvgr6dckj9rymydinl"; depends=[htmlwidgets]; }; - qrcm = derive2 { name="qrcm"; version="2.0"; sha256="09awa82qvxhdif9g6w36d89wyhfm55z39dw063lasa7pp7dd3gcl"; depends=[pch survival]; }; + qrcm = derive2 { name="qrcm"; version="2.1"; sha256="0wp6ynckh66gxi569wbvn5szwih4g0c21zrrpz3zfavhqwk7srgf"; depends=[pch survival]; }; qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; }; qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; }; qrfactor = derive2 { name="qrfactor"; version="1.4"; sha256="0f02lh8zrc36slwqy11x03yzfdy94p1lk5jar9h5cwa1dvi5k8gm"; depends=[cluster maptools mgraph mvoutlier pvclust]; }; @@ -8113,7 +8320,7 @@ in with self; { qrmtools = derive2 { name="qrmtools"; version="0.0-6"; sha256="14127svars3f7682mmbmqy0m51xs6syzcrki1mpjf9j1qv2s3jhf"; depends=[lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-3"; sha256="0xdhmcqvgjmrf4c72x76yz5kp0jiysy8q6f67lix1h4mvzr4q2qd"; depends=[]; }; qrnn = derive2 { name="qrnn"; version="1.1.3"; sha256="0phbazi47pzhvg7k3az958rk5dv7nk2wvbxqsanppxsvyxl0ykwf"; depends=[]; }; - qtbase = derive2 { name="qtbase"; version="1.0.11"; sha256="01fx8yabvk2rsb0mdx9f59a9qf981sl88s56iy58w5dd6r2ag6gc"; depends=[]; }; + qtbase = derive2 { name="qtbase"; version="1.0.12"; sha256="0j3nzmh4xj0mzwlh9dsc3296yqbkhzn6qhzb8ismhi0bmx5hjydj"; depends=[]; }; qte = derive2 { name="qte"; version="1.0.1"; sha256="15y6n0c9jinfz7hmm107palgy8fl15bc71gw0bcd3bawpydkrq2w"; depends=[]; }; qtl = derive2 { name="qtl"; version="1.40-8"; sha256="05bj1x2ry0i7yqiydlswb3d2h4pxg70z8w1072az1mrv1m54k8sp"; depends=[]; }; qtlDesign = derive2 { name="qtlDesign"; version="0.941"; sha256="138yi85i5xiaqrns4v2hw46b731bdgnb301wg2h4cfrxvrw4l0d5"; depends=[]; }; @@ -8128,11 +8335,11 @@ in with self; { quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; }; quadmesh = derive2 { name="quadmesh"; version="0.1.0"; sha256="1k1midhszmi843krv9sdwbyhjmffgps0xx9aigkp7yw7mpif07vx"; depends=[dplyr raster]; }; quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; }; - quadrupen = derive2 { name="quadrupen"; version="0.2-4"; sha256="0gs565zi5qkccr9f65smvzgq2d97p7i5inksp2492bjvqhsbagxj"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; + quadrupen = derive2 { name="quadrupen"; version="0.2-5"; sha256="193hn3yf6c5i3p4n8gpg78nvsf2jdlcw40mm4p2ffxk7xzmv8xvl"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 scales]; }; qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; }; qualV = derive2 { name="qualV"; version="0.3-2"; sha256="16pjn2la4da9466rafl5drlzx2rcf3vy68b5wz27aacyr15nvdcb"; depends=[KernSmooth]; }; qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; }; - qualpalr = derive2 { name="qualpalr"; version="0.3.1"; sha256="0qfdhzlr4l68a0pwvc58kdh0n5hj7lx7vjkqrq75nbz2b2ycksd3"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; + qualpalr = derive2 { name="qualpalr"; version="0.4.0"; sha256="0nbgcz6d57y6w7npfl064i561j9iw3r55q9md5g4hfdhazb1hf7d"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; }; qualtRics = derive2 { name="qualtRics"; version="0.3"; sha256="1w2rbp3wxxp7yazf00wdjzm4d632n5iwdfcq1fsam5h0srrn18bz"; depends=[httr jsonlite stringr XML]; }; qualvar = derive2 { name="qualvar"; version="0.1.0"; sha256="07vpq5nyh40y1sq1fsg97z7bbardqakq6bx635v42pv00480h9sh"; depends=[]; }; quantable = derive2 { name="quantable"; version="0.2.2"; sha256="179bqqrga8mpigchfmhf11sc75frhd9nd6yqclz85lnd6gl16yd7"; depends=[caret e1071 gplots Matrix pROC RColorBrewer scales]; }; @@ -8140,26 +8347,27 @@ in with self; { quanteda = derive2 { name="quanteda"; version="0.9.9-24"; sha256="0wh7b3yj8qlgygy85sl98pf0inv9vxkd32k56k97bdiajz61cbmk"; depends=[ca data_table fastmatch ggplot2 Matrix proxy Rcpp RcppArmadillo RcppParallel SnowballC stringi wordcloud yaml]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; - quantmod = derive2 { name="quantmod"; version="0.4-7"; sha256="16iqpavdslhb1fdpvnxdd3awq9b0rj16mravg9nq8brqb6z3p2x2"; depends=[TTR xts zoo]; }; - quantreg = derive2 { name="quantreg"; version="5.29"; sha256="098gy8xv9kcl5y0cm93b8chr5sm6crrdxi20bkx9lmwmybl3himv"; depends=[Matrix MatrixModels SparseM]; }; + quantmod = derive2 { name="quantmod"; version="0.4-8"; sha256="0jgd2i93k7pi8snqcs0lx668mq6wla3qaiv5a13m6fvb6clncp32"; depends=[TTR xts zoo]; }; + quantoptr = derive2 { name="quantoptr"; version="0.1.2"; sha256="1hvr69ng8z7qhw3w0by95v6sckcismx8d5s69k2949rfg79z3dmh"; depends=[quantreg Rdpack rgenoud stringr]; }; + quantreg = derive2 { name="quantreg"; version="5.33"; sha256="1dirmxa4cd05nb0yv0ga6ivw5hkr2zr2cb2lixl1nb6amqn024is"; depends=[Matrix MatrixModels SparseM]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-5"; sha256="0yckbz8bk7zlg787a0q70x5k1y4z1nj4difavimgs4s5ac6nbajd"; depends=[randomForest RColorBrewer]; }; quantregGrowth = derive2 { name="quantregGrowth"; version="0.3-2"; sha256="1ga3qn8g7r465dlxl8wmvz1vlpq5639kmawancsgkm77f316wpzf"; depends=[quantreg]; }; quantspec = derive2 { name="quantspec"; version="1.2-1"; sha256="0kvwifdwy3big0lls5h3wcb48v3jvlfp1l0zjd07jnvj43zj3ysd"; depends=[abind quantreg Rcpp snowfall zoo]; }; quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; }; - questionr = derive2 { name="questionr"; version="0.5"; sha256="1n3qv4ynddhhh0h9n0v21y7dq7mq5rmg0qqh3spxgrj0acrnqzhp"; depends=[classInt highr htmltools miniUI rstudioapi shiny]; }; - queuecomputer = derive2 { name="queuecomputer"; version="0.6.1"; sha256="171fgmb5xz653fh9lr3p562g5ap9072a546r8kan5b6msmnh6adk"; depends=[dplyr Rcpp RcppArmadillo]; }; - queueing = derive2 { name="queueing"; version="0.2.8"; sha256="08wcb58rp9g85cigm0zn0ba4xgihi4283w3sr4b16lv67sgld4p6"; depends=[]; }; + questionr = derive2 { name="questionr"; version="0.6.0"; sha256="057akqpnvpm0ss650wfjd16j5xk6vxcs1micbqfyskajs295ql8l"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; }; + queuecomputer = derive2 { name="queuecomputer"; version="0.8.1"; sha256="1c4xifg0wz09bn9j0y7xyn2rdr4fz2vr2r35r8bcajnmgs9hai3x"; depends=[dplyr Rcpp RcppArmadillo tidyr]; }; + queueing = derive2 { name="queueing"; version="0.2.9"; sha256="1k64j880jw9g28jklxf7nqnav4mpw83wp63fafx7zhzp4wq412bm"; depends=[]; }; quhomology = derive2 { name="quhomology"; version="1.1.0"; sha256="0acglmjp4x8f81iysxp8x7v5279p8gdidj308b9spn6xbmqgbr8z"; depends=[MASS numbers]; }; quickReg = derive2 { name="quickReg"; version="1.0.0"; sha256="0dgs0ja2srivrbzl11d3al45ncnrlx7940sk0h8c6lnnxv7nz77k"; depends=[ggplot2 nortest psych survival]; }; quickmapr = derive2 { name="quickmapr"; version="0.2.0"; sha256="1hxcq4h1rgdmypn3kgmwppzhacyspcj7iv2sy7s2xx5y69x62hf1"; depends=[httr raster rgdal rgeos sp]; }; quickpsy = derive2 { name="quickpsy"; version="0.1.4"; sha256="0zvi5g43dj1a3f6nysw9gc9nnhm0z5h6sfka4ggwr14fw6k0gz3l"; depends=[DEoptim dplyr ggplot2 MPDiR]; }; quint = derive2 { name="quint"; version="1.2.1"; sha256="1d9dnrjnl9cg2yn5snr6x9qr6lf74639j3ymsxpw0wn5c4fm8z46"; depends=[Formula partykit rpart]; }; quipu = derive2 { name="quipu"; version="1.9.0"; sha256="1py1qpbwp2smr5di8b3zmzxxhchfmr5qfhqkdiqig28mcnqcmp5n"; depends=[agricolae pixmap shiny stringr xtable]; }; - qut = derive2 { name="qut"; version="1.1"; sha256="0d9gap5jp69y9r7zip4r1kp79lq2wfrxpjka225pxjgj59rj3xls"; depends=[flare glmnet lars Matrix]; }; + qut = derive2 { name="qut"; version="1.2"; sha256="1w6zsjphzfb1gby21cq20j8cclj15xklwga821sj07x3nchgn421"; depends=[flare glmnet lars Matrix]; }; qvcalc = derive2 { name="qvcalc"; version="0.9-0"; sha256="0gccxl6l6ibffxkjzfmh2scm8f3bnqwm1hr7ss7dqshhxw21kd5c"; depends=[]; }; qwraps2 = derive2 { name="qwraps2"; version="0.2.4"; sha256="18ail1y3kpiiwgkf7zn1acfz1ipz7wbk8pcmlganayr8p9yv7sh2"; depends=[dplyr ggplot2 knitr Rcpp tidyr]; }; - r_jive = derive2 { name="r.jive"; version="1.7"; sha256="051kd6ksan4bw3z9w6p22h0sqn6y6dyadcxkibgyi8pz5xp6qypx"; depends=[gplots SpatioTemporal]; }; + r_jive = derive2 { name="r.jive"; version="2.1"; sha256="0l0bhhp6bdc84pzxi7gnsxx3scycw0zahrnc496wx3j43np9hlsg"; depends=[abind gplots SpatioTemporal]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.1"; sha256="0b64kia06n8l88rm63hcb8h8qha5if2h8vm8m4s5fdf5hl34dv02"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; @@ -8167,9 +8375,9 @@ in with self; { r2stl = derive2 { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; }; r4ss = derive2 { name="r4ss"; version="1.24.0"; sha256="1kifzfg2zx6lq2c8qqbhb096z1wgdayhg5qzx5hnkwpn05w5cma3"; depends=[coda corpcor gplots gtools maps pso truncnorm]; }; rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; }; - rAltmetric = derive2 { name="rAltmetric"; version="0.6"; sha256="0ym8p9rq64ig3vlaimk38rmc2h1315bphx7v1rd6g4gypgx4ym15"; depends=[ggplot2 plyr png RCurl reshape2 RJSONIO]; }; + rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; }; rAmCharts = derive2 { name="rAmCharts"; version="2.1.3"; sha256="0q02x00gvvqzrsl2m9lmmjc2xf3vf718ar0zlqnqn6rnz94lbvv3"; depends=[data_table htmltools htmlwidgets knitr pipeR yaml]; }; - rAverage = derive2 { name="rAverage"; version="0.4-13"; sha256="0yfy81p99a3cb31cagxdvby7l2hcc60g3mnfizd9nvgamdmw08sy"; depends=[]; }; + rAverage = derive2 { name="rAverage"; version="0.5-3"; sha256="0mn0ngnjjcyh59q4k0lc1fpim2n81aif1b4nrkdwl5dn59zb3cw3"; depends=[]; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.1.0"; sha256="194j445nirvvkz880ax0zw2q1mkiy0khdfjl7bwiwj8knhhvkrhw"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; @@ -8192,6 +8400,7 @@ in with self; { rFerns = derive2 { name="rFerns"; version="2.0.2"; sha256="19lwvb9aa115gc6wb5vzhmmhqgq2xxf6y83hw5y6k589prbxfq8y"; depends=[]; }; rForest = derive2 { name="rForest"; version="0.1"; sha256="1y7gqa1333nvllngy821k655glxkb9p6rbnx9cns7dy0qdqjzx50"; depends=[alphashape3d geometry rgl sp]; }; rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; + rGoodData = derive2 { name="rGoodData"; version="0.1.0"; sha256="1yys79dgcwsbc1xv1d5qv6bvcsdyf4k50jrvbgmmwwygami257zn"; depends=[data_table httr jsonlite]; }; rGroovy = derive2 { name="rGroovy"; version="1.0"; sha256="03kyw1hv1xmv580cf47gb3fzvjp27j0a93604h5hap981pzibdpy"; depends=[rJava]; }; rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; @@ -8207,7 +8416,7 @@ in with self; { rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; }; rMR = derive2 { name="rMR"; version="1.0.4"; sha256="1md0xkl87qqylwh5zbx9awa5i4f573v4glgaf4k8h5ls4icaaav4"; depends=[biglm]; }; rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; }; - rNOMADS = derive2 { name="rNOMADS"; version="2.3.3"; sha256="186pcxdfkp24aff3qldkhbcxydifg092w3jadahfrd30d6gyfvp8"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; + rNOMADS = derive2 { name="rNOMADS"; version="2.3.5"; sha256="1p7y47dl92j284hbra6ik4bqfavnrqwdarf83k3lmqyqy89kh7yf"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; }; rPlant = derive2 { name="rPlant"; version="2.16"; sha256="0bi7p8w6v8gys8rab5f0c11r0rsp14nsf4mmm2bsz8kxfprh6vdp"; depends=[RCurl rjson seqinr]; }; rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.1"; sha256="0yk61ck2br81cd40yvqxrzi9s680ii26wbl0wjdam04dyf0vh1cv"; depends=[mvtnorm ssanv]; }; rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; }; @@ -8218,7 +8427,7 @@ in with self; { rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; rSPACE = derive2 { name="rSPACE"; version="1.2.0"; sha256="1nmv8niqc34mipzhny1mlwc9v4kck02ixmm1i25cqdfhsng03dma"; depends=[ggplot2 plyr raster RMark sp tcltk2]; }; rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; }; - rTableICC = derive2 { name="rTableICC"; version="1.0.3"; sha256="1q7xac9vfnakjp54ccqli42wi8idfb9g9crgbqyg5s726b7z50n7"; depends=[aster partitions]; }; + rTableICC = derive2 { name="rTableICC"; version="1.0.4"; sha256="0if18is64m3ka2dxfbj7vb1lbwwhn2hgfh3kdh7d47nr3z4ak7p0"; depends=[aster partitions]; }; rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; }; rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.1.0"; sha256="0p5hba8iv060szp23s05hvpmwan518ykakm6vqzdcki0inxw0hyv"; depends=[choroplethr rvest stringr]; }; rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; }; @@ -8235,9 +8444,10 @@ in with self; { radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.6.0"; sha256="01gzcvq5xq8ljbxkwx8qxcpd871nd03236fkv1gr5s1bw9lb0z6l"; depends=[car dplyr ggplot2 gridExtra magrittr MASS psych r_import radiant_data scales shiny wordcloud]; }; radiomics = derive2 { name="radiomics"; version="0.1.2"; sha256="1l9ribgyk0wgr7cy4fh7qp0hwzxcmkir9r2zwb0ha3rqqggd3xj7"; depends=[Rcpp reshape2 spatstat]; }; radir = derive2 { name="radir"; version="1.0.2"; sha256="09lcq8ax5x5yk3sqx15rvw3vyi8fyfzgs76kxjhf7hcw4qnib46d"; depends=[hermite]; }; + radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - rags2ridges = derive2 { name="rags2ridges"; version="2.1.1"; sha256="1wma4yikm7aqccldqga96hl2vpagjvmv5gwglj04clcmh9i7cskp"; depends=[expm fdrtool ggplot2 Hmisc igraph Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; - ragt2ridges = derive2 { name="ragt2ridges"; version="0.2.3"; sha256="1ws2drllynmwc4dfd90b7pafc1gpz99g129yjf511ikjzfbl3lra"; depends=[expm fdrtool graph gRbase igraph marray Matrix mvtnorm rags2ridges RBGL Rcpp RcppArmadillo]; }; + rags2ridges = derive2 { name="rags2ridges"; version="2.2"; sha256="04f9gvwpgrx54dgbjjixlxa2056aqcz2kryn4jplwf5fc0vj1lyn"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape sfsmisc snowfall]; }; + ragt2ridges = derive2 { name="ragt2ridges"; version="0.2.4"; sha256="0pygq4na4xws1s1f96a0qslgsj94r28x0sbmxl402pshwkjl0xs4"; depends=[abind expm fdrtool graph gRbase igraph marray MASS Matrix mvtnorm rags2ridges RBGL Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="0.5"; sha256="0h09h9ws9c2d9xc00w4hl000h0kbvq16lz4vgv1w93am8zmsp4wm"; depends=[futile_logger limSolve]; }; rainbow = derive2 { name="rainbow"; version="3.4"; sha256="09vxdb4j099grnlx10995b74r3h9g1vs8div3nywgnslaj8x7pay"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; }; @@ -8254,15 +8464,15 @@ in with self; { random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.6-12"; sha256="1i43idaihhl6nwqw42v9dqpl6f8z3ykcn2in32lh2755i27jylbf"; depends=[]; }; - randomForest_ddR = derive2 { name="randomForest.ddR"; version="0.1.1"; sha256="0q4xjh7qqmd4slxwd1z5mnpn4y3vx1vbn6v060zbd0afibpcw92b"; depends=[ddR Matrix randomForest]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="2.4.1"; sha256="17a59jc8h7bfgz9gpisc144fyas7da1c1lab1x8wasfilgkg08z2"; depends=[]; }; + randomForest_ddR = derive2 { name="randomForest.ddR"; version="0.1.2"; sha256="1fijnzzap8my4l211m5pgj4fwna04z1db5m3hhim72i3xzc77hy2"; depends=[ddR Matrix randomForest]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="2.4.2"; sha256="17f9dr93vbmv4b1hmx4cw5mc3phm7wnjzw70yi8nbhmzlar3qj7v"; depends=[]; }; randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; }; randomLCA = derive2 { name="randomLCA"; version="1.0-11"; sha256="076sjq74dhdr9vqlg8kns4apvkrv9qpvkixqkrkz2l7215k79fz7"; depends=[boot fastGHQuad lattice Matrix]; }; randomNames = derive2 { name="randomNames"; version="0.4-0"; sha256="0419kjgin5yf58765rc6m8wcbp26yggkiarprzissqaf9sp0sh4p"; depends=[data_table]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.0.0"; sha256="15qgfzwc2cli2gjwzj1pf4h16qciiinihd9ib6ph74jbkpimyh11"; depends=[colorspace stringr V8]; }; randomizationInference = derive2 { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; }; - randomizeBE = derive2 { name="randomizeBE"; version="0.3-2"; sha256="1mkq1fpr7bwlk01246qy6w175jcc94q8sb3pyjkdr8yms6iqk8i7"; depends=[]; }; + randomizeBE = derive2 { name="randomizeBE"; version="0.3-3"; sha256="0vdvgk2b1h1lsj0ka01lwldfxanngir91axc8ywa6pg12hrdkkb0"; depends=[]; }; randomizeR = derive2 { name="randomizeR"; version="1.3"; sha256="0s62r0fxi0f9jbwldvga2vn06cp0amxjhmqch7d892c4wa7r9fj0"; depends=[ggplot2 plotrix]; }; randomizr = derive2 { name="randomizr"; version="0.4.1"; sha256="0shj50s88l96d0zl8iv2wdzgrszffi9hgv7hsmvcxh1jm051ipi9"; depends=[]; }; randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; }; @@ -8271,7 +8481,7 @@ in with self; { rangeBuilder = derive2 { name="rangeBuilder"; version="1.3"; sha256="08v01b0wm5r73yp2qkxxvd8jsxba22rnqsbwwrqrkrm71c68j192"; depends=[alphahull raster rgdal rgeos sp stringi]; }; rangeMapper = derive2 { name="rangeMapper"; version="0.3-1"; sha256="005r97zwz0czsp543h1g3zrys00s6wdyk0ji9pk7jn625i02cbdk"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; }; rangemodelR = derive2 { name="rangemodelR"; version="1.0.1"; sha256="04zv8a4nhin9masvbw1cmbwdkls4wgq81xfw6kg0wdh1hpqjz1z0"; depends=[]; }; - ranger = derive2 { name="ranger"; version="0.6.0"; sha256="1fwqwbi0dnla16x6zj14rf95qr5gmilfmlrwnv7s960h4yiw4n97"; depends=[Rcpp]; }; + ranger = derive2 { name="ranger"; version="0.7.0"; sha256="0g1rnpk4c06lmy0r5n0j7i2xna190kqalmxp42d9gnk3drnb1x43"; depends=[Rcpp]; }; rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; }; rankdist = derive2 { name="rankdist"; version="1.1.2"; sha256="1nr9nr5nfziia6jykk598hm5ngkfr6yx5mypq34iyfm24877gd3q"; depends=[hash optimx permute Rcpp]; }; rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; }; @@ -8282,8 +8492,9 @@ in with self; { raptr = derive2 { name="raptr"; version="0.0.3"; sha256="1ydk83w1sd60pb0a03938hlgdw87pk40l028cxwa8kzwrzi6gh1j"; depends=[adehabitatHR BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp testthat]; }; rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; + rarhsmm = derive2 { name="rarhsmm"; version="1.0.2"; sha256="0npj9iysl32lhplpqp5a7h7gm35jz33div8vwksd7l6jr73rcqdg"; depends=[glmnet]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; - rase = derive2 { name="rase"; version="0.2-22"; sha256="0wva7dd7zsclqxk3imkvbi98rxsvd1axr1l1msfcf9r8xrzybshf"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; + rase = derive2 { name="rase"; version="0.3-2"; sha256="1c8navn518prz8j644bg1fzx8q1jgnl5src5kagq53ln7fs6jq73"; depends=[ape mvtnorm polyCub rgl sm spatstat]; }; raster = derive2 { name="raster"; version="2.5-8"; sha256="1k34caqj8fab7am44zmp1szk0w15rjc04xz3phzm2l1lg2yjm6a7"; depends=[Rcpp sp]; }; rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; }; rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; }; @@ -8295,14 +8506,15 @@ in with self; { rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; rattle = derive2 { name="rattle"; version="4.1.0"; sha256="0ww4bwwvivpk049lpv6k29zxkb0islhwh2qnlrvasgh2b9yig25p"; depends=[magrittr RGtk2 stringi]; }; raw = derive2 { name="raw"; version="0.1.4"; sha256="112fw1si708qrj6r91b1i8cwhxa20amri5838rc5azn6d5b9wcks"; depends=[]; }; - rbamtools = derive2 { name="rbamtools"; version="2.16.0"; sha256="0a3862923wn9mxpbhsq7sxd0q306xnzphsn2p0zxsx1ixw7ksy4j"; depends=[refGenome]; }; + rbamtools = derive2 { name="rbamtools"; version="2.16.6"; sha256="1sb18qx68fnj1d598lw8fkqnxp3c5s704g6cnhwy299gppj3xg1d"; depends=[refGenome]; }; + rbcb = derive2 { name="rbcb"; version="0.1.0"; sha256="1p6fmky5ci54is5abf9bqd8xd7jqskn8gic3hih8iangx6vcp4a2"; depends=[httr jsonlite tibble xml2 xts]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; rbgm = derive2 { name="rbgm"; version="0.0.4"; sha256="0sqi42vz3fdgp7gpa4jjh8dxz3iwwagw9in70jpz6fc18ivizkp1"; depends=[dplyr geosphere raster sp tibble]; }; - rbhl = derive2 { name="rbhl"; version="0.3.0"; sha256="0ig9s0xnwkri1sxqaa8fax68v22bp4vl9rv4wq1gd3gpgl2c0frc"; depends=[httr jsonlite plyr tibble xml2]; }; + rbhl = derive2 { name="rbhl"; version="0.8.0"; sha256="1avx36as99za19acjh7adb72ckdn69rmiwzcrrqxskzny56vxf0d"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.7.0"; sha256="0j5h5m4xshs5xizzb3fxlzjgp6nkyz0hbh0yhky1pj815n66ww9m"; depends=[data_table ncdf4 reshape2]; }; rbiouml = derive2 { name="rbiouml"; version="1.7"; sha256="0bk0pvx0rfk74s7lbr8lc664yplfky94j1ym098w029045k233pi"; depends=[RCurl RJSONIO]; }; - rbison = derive2 { name="rbison"; version="0.5.0"; sha256="01j8jnfhikaggsvcnxamchvgabp8rbpmi1q18s1bcn5vc55fi12f"; depends=[dplyr ggplot2 httr jsonlite mapproj plyr sp]; }; + rbison = derive2 { name="rbison"; version="0.5.4"; sha256="0l3653q7bfda9lw1isnx6gdd7l5b8aldqgc2hppg2wh2k004rnf6"; depends=[crul dplyr ggplot2 jsonlite mapproj plyr sp]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; @@ -8316,7 +8528,7 @@ in with self; { rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; - rcdd = derive2 { name="rcdd"; version="1.1-10"; sha256="16j98x87dsjd7zj5pp9i5lc0a3ypr98zjwydpyhpl3zc0vnbbild"; depends=[]; }; + rcdd = derive2 { name="rcdd"; version="1.1-13"; sha256="0dnijjbi79hi23rq6j9wlynbap275n4x4097x0zz52imkqfw03aj"; depends=[]; }; rcdk = derive2 { name="rcdk"; version="3.3.8"; sha256="0gwjb6ph7v94zl3kdh24dbk8hz48gi2y3xmj35wpjvzc496ldmbf"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="1.5.13"; sha256="0ypfg4kzf07j1gi6nyifkss9s43hcb7jps9qh6990ci5qasw4z6a"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; }; @@ -8325,7 +8537,7 @@ in with self; { rclimateca = derive2 { name="rclimateca"; version="0.2"; sha256="1haczzx0hbah4vzbp10rih2yqq1x1s6w9f66xgk485sgyvkg5855"; depends=[digest httr lubridate prettymapr reshape2]; }; rclinicaltrials = derive2 { name="rclinicaltrials"; version="1.4.7"; sha256="1y9naqi2bylihkasvfndkpwslnm393709645jwvwplzaaviy0hf7"; depends=[httr plyr XML]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; }; - rcompanion = derive2 { name="rcompanion"; version="1.4.0"; sha256="1brl9q421q8n5lab5wlp0hzgzdldwr2b9sa8qngkk3nfvzy1jdwx"; depends=[boot BSDA coin DescTools EMT FSA hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; + rcompanion = derive2 { name="rcompanion"; version="1.5.0"; sha256="1dnrnpmk0gqnz45xqp5ld1slgykd6bg44n2bby5l10s7kqqli4ql"; depends=[boot BSDA coin DescTools EMT FSA hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; }; rcorpora = derive2 { name="rcorpora"; version="1.2.0"; sha256="0nxd2arzz2617xxcngvcrrrsky9f1b9zdmpv81zr89y08b3xh9f1"; depends=[jsonlite]; }; rcqp = derive2 { name="rcqp"; version="0.4"; sha256="1jpzp3cs17bwfabzg7jffa3hni867mjw8yxi0igxicrbz56j33jb"; depends=[plyr]; }; rcrossref = derive2 { name="rcrossref"; version="0.6.0"; sha256="0fy1wkn6s5pkhcfhjydy5zvra89g1p2nf5j85czxhxbq60h1jd1b"; depends=[bibtex dplyr httr jsonlite miniUI plyr R6 rappdirs shiny stringr xml2]; }; @@ -8335,21 +8547,25 @@ in with self; { rda = derive2 { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; }; rdatacite = derive2 { name="rdatacite"; version="0.1.0"; sha256="1h8zrgy3ig4rsrm4j9ivff71mdyabrdp71cflxahw7c3q9iyjxhf"; depends=[oai solrium]; }; rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; }; + rdataretriever = derive2 { name="rdataretriever"; version="1.0.0"; sha256="1a1dbzs1jravbhidv9wcs52qbd6zf7wf26hixpqjwiq8gsq9l5gh"; depends=[]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; + rddensity = derive2 { name="rddensity"; version="0.1"; sha256="16xfdaf43dp7xh65ay9sv5s2v1149c6ahyg1y7cnp9lncy6gvkny"; depends=[]; }; rddtools = derive2 { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; }; - rdefra = derive2 { name="rdefra"; version="0.1"; sha256="1c5j2ja54k7pk86g7mh5wbqx1qkj8ks2ihmn774aqyky6nkgmx92"; depends=[plyr RCurl XML]; }; + rdefra = derive2 { name="rdefra"; version="0.3.4"; sha256="05fskap0vvrq08m4gql9gczy04lc3dgxgjcsb57dgp3nng358sf6"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; + rdist = derive2 { name="rdist"; version="0.0.1"; sha256="1rdw0vpd8xc6n638cyfjq8ll5pkhvkcf14vbs3m8l75fdf7mxlbb"; depends=[Rcpp RcppArmadillo]; }; + rdlocrand = derive2 { name="rdlocrand"; version="0.1"; sha256="1vf9f7l9cjc2zwfpqvbxapcyyzb0vv9jvnai74z34clcwcmx6yrm"; depends=[AER sandwich]; }; rdnb = derive2 { name="rdnb"; version="0.1-1"; sha256="1mg40jad79mk95ndnljvfvyh9rhbxkw7inpg2vbsixf1ywdljri3"; depends=[brew httr xml2]; }; rdomains = derive2 { name="rdomains"; version="0.1.5"; sha256="0xz6vdci2yxmc2850jlgj7c27cndwvk645kwky0whisg6cbv8wdg"; depends=[aws_alexa curl glmnet Matrix RSelenium urltools virustotal XML]; }; rdpla = derive2 { name="rdpla"; version="0.1.0"; sha256="0h3m2f5rdyvdgb767hnmck4z1wq1y4hvbcwgfh7zfjcd9zns42h1"; depends=[data_table httr jsonlite tibble]; }; - rdrobust = derive2 { name="rdrobust"; version="0.95"; sha256="09dk8kgpyz3sdkvspwka9p4a6kvl7yibdppd9y06sa7grmpykvzm"; depends=[]; }; + rdrobust = derive2 { name="rdrobust"; version="0.97"; sha256="0l4gjpmy7lv2zhwh346pjci6d5vbp4n47plchfi48m8afn4w1v6k"; depends=[]; }; rdrop2 = derive2 { name="rdrop2"; version="0.7.0"; sha256="03r3iqi796y7s8bnyca6nya2ys7s1rdxm00sy9c7l7sh0z6npcq4"; depends=[assertthat data_table dplyr httr jsonlite magrittr]; }; rdryad = derive2 { name="rdryad"; version="0.2.0"; sha256="16wbf0hpb4pgjcq84s7ac0y1cm5i33l8n6li5z8ynivdj9w9fb46"; depends=[httr oai solr xml2]; }; rdwd = derive2 { name="rdwd"; version="0.7.0"; sha256="0mqnf88y6g25q1a7k71ldd7szl4pm5s44cid1494m4xfdk50limb"; depends=[berryFunctions]; }; reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; }; reReg = derive2 { name="reReg"; version="1.0-0"; sha256="0xd78frrzykdrdwj39vv5m11s5v3xg9fym200gz7sffw8vjv3z96"; depends=[aftgee BB MASS SQUAREM survival]; }; - reactR = derive2 { name="reactR"; version="0.1.0"; sha256="1fw6rdi231blr416hq881pc3glv7pnn3fhc496cnj0dzwg0b32v6"; depends=[htmltools]; }; + reactR = derive2 { name="reactR"; version="0.1.2"; sha256="011ga8f72qq0ljqc7j0qvcbbr2jg167ri1yny65n55dls80flmng"; depends=[htmltools]; }; read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; }; readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.3"; sha256="0yisrg2gdd053xf1w0ssw7r4wdarqzbsqzrcngb0dl7ah0y5w7vb"; depends=[]; }; readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; }; @@ -8357,16 +8573,17 @@ in with self; { readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; }; readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.6.4"; sha256="1kj648phxvpg480fdhr2sj4l8q306gjdl886zqnkwxif5mw1aq7g"; depends=[cellranger readr xml2]; }; + readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; readability = derive2 { name="readability"; version="0.1.1"; sha256="19csrvnl1gslzamn46w5r0q4x12g56zr11m4lwp6rzwd5wcnj9ra"; depends=[data_table ggplot2 syllable tidyr]; }; readbitmap = derive2 { name="readbitmap"; version="0.1-4"; sha256="08fqqsdb2wsx415mnac9mzl5sr5and0zx72ablnlidqfxv8xsi9d"; depends=[bmp jpeg png]; }; readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; - readr = derive2 { name="readr"; version="1.0.0"; sha256="0xji0dbal6xcxnsmjj678fw29n7wrj45wrd5ng99yhqqijcm9f6g"; depends=[BH curl hms R6 Rcpp tibble]; }; + readr = derive2 { name="readr"; version="1.1.0"; sha256="1g7g3gdmvq7nj8asw6fi13k38c420sy9696nqgkrhlvv5h13yqs7"; depends=[BH hms R6 Rcpp tibble]; }; readstata13 = derive2 { name="readstata13"; version="0.8.5"; sha256="1hkbh7kia7bgshhlq2n683s0gs4rw4wzyfwrbp0hq1xirqnypj0a"; depends=[Rcpp]; }; - readxl = derive2 { name="readxl"; version="0.1.1"; sha256="0ypmxp1xl2a27vlx7dj6kszbbr8fbs6lcc1ibhw1ln1p053xmlrr"; depends=[Rcpp]; }; + readxl = derive2 { name="readxl"; version="1.0.0"; sha256="1bf7gxw9r11m4llyymplxiaa4gzgyj4bwmwad5in756pzq3jzmpv"; depends=[cellranger Rcpp tibble]; }; reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; }; rebird = derive2 { name="rebird"; version="0.3.0"; sha256="0srny28mdd5zpk10pic5w0h0z21w2651rrdqsf87h7idm12j9zsw"; depends=[dplyr httr jsonlite]; }; - rebmix = derive2 { name="rebmix"; version="2.9.0"; sha256="1kbmz969wiv2jspa2pi0lgbxsj3sd9xzn24bmks6mv5hzl8pp9xb"; depends=[mvtnorm]; }; + rebmix = derive2 { name="rebmix"; version="2.9.1"; sha256="1qsyizjjhinm5ds3cgfl3h3vd0vf0pd0ni9nzzznvdvci7blb9jk"; depends=[mvtnorm]; }; rebus = derive2 { name="rebus"; version="0.1-2"; sha256="18vqq535dsakchwid6k2wb6jl50yf1vsqlaryadf1j0ivgawl6av"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; }; rebus_base = derive2 { name="rebus.base"; version="0.0-2"; sha256="15yxh7wxb8hfbr5mhpcpyi817b5r6g6ki60hkycvxp13ss770qwn"; depends=[]; }; rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; }; @@ -8375,21 +8592,21 @@ in with self; { recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; }; - recmap = derive2 { name="recmap"; version="0.5.16"; sha256="0fq0l483mmb04n2qj2msngw6midwjrq5fjdh3sgzy5fhj5bcd288"; depends=[GA Rcpp sp]; }; + recmap = derive2 { name="recmap"; version="0.5.20"; sha256="1ld3ifcn9rwgk4hiislmdkz73sdxagrbynq9x3mswjifx1hlqj6d"; depends=[GA Rcpp sp]; }; recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; }; - recommenderlab = derive2 { name="recommenderlab"; version="0.2-1"; sha256="03gyz6davjimrbbnjglj41hysvvd2hnxsi166san1877ibblgw4c"; depends=[arules irlba Matrix proxy registry]; }; + recommenderlab = derive2 { name="recommenderlab"; version="0.2-2"; sha256="13mgkxrcwh5ry699my3w6xgm6rabsk9fd5qqsdwzy7cfq6xkq7cg"; depends=[arules irlba Matrix proxy registry]; }; recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; }; - recosystem = derive2 { name="recosystem"; version="0.4"; sha256="1h8147x9caxxprxpgzk7qj9nkafbi34zhcnaksdpv95k7vnhs4ps"; depends=[Rcpp]; }; - red = derive2 { name="red"; version="1.0.0"; sha256="07m48znd0dm2fd4jagjrn2fqx2wr1hzvx2rljlkpl0hkkljcz8lj"; depends=[BAT dismo geosphere igraph jsonlite maptools raster rgdal rgeos rJava sp]; }; + recosystem = derive2 { name="recosystem"; version="0.4.1"; sha256="1gnq2gq47qwinack3f95d7c8877qia44zk9pnj1sx83jjs8sxk8p"; depends=[Rcpp]; }; + red = derive2 { name="red"; version="1.0.1"; sha256="159zjqk2fns41n8vsz4x9jl6f0ln0c70894lvxm7pzsbm43n1ix3"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; }; reda = derive2 { name="reda"; version="0.3.1"; sha256="0313x4vm0jm0lgzspv0ldsblmjgy13dqbsafpikkh603k5pkq1js"; depends=[ggplot2 splines2]; }; redcapAPI = derive2 { name="redcapAPI"; version="1.3"; sha256="08js2lvrdl9ig0pq1wf7cwkmvaah6xs65bgfysdhsyayx0lz5rii"; depends=[chron DBI Hmisc httr stringr]; }; reddPrec = derive2 { name="reddPrec"; version="0.3"; sha256="01dsgd28ps1f32l3ppz4fbzihs5i79zb1nqg9r3b21fsx1ly44d6"; depends=[snowfall]; }; - redist = derive2 { name="redist"; version="1.3"; sha256="19d5m17b8rzy9fsl95r0zdr5swawdbdbg0pib85028f8pqh9g5f1"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; + redist = derive2 { name="redist"; version="1.3-1"; sha256="0rivfi3jpjvhd36rkhlazx4vr7wsig9lf3im1masjmzd4s00zrd8"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; }; redland = derive2 { name="redland"; version="1.0.17-9"; sha256="01jx6r7zznb6cpi2bx36fpsgig3bkc1nv9afz5s2nfqisxiq48w5"; depends=[roxygen2]; }; ref = derive2 { name="ref"; version="0.99"; sha256="0f0yz08pqpg57mcm7rh4g0rbvlcvs5fbpjkfrq7fmj850z1ixvw0"; depends=[]; }; - refGenome = derive2 { name="refGenome"; version="1.7.0"; sha256="0xj5mqk7i4bl6ffdx346q558sn8hmqlkfpiv7ggrfhaqg02f6war"; depends=[DBI doBy RSQLite]; }; + refGenome = derive2 { name="refGenome"; version="1.7.3"; sha256="15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"; depends=[DBI doBy RSQLite]; }; referenceIntervals = derive2 { name="referenceIntervals"; version="1.1.1"; sha256="04199nxh216msaghkp66zsi96h76a7c42ldml0fm66v2vamcslg8"; depends=[boot car extremevalues outliers]; }; refimpact = derive2 { name="refimpact"; version="0.1.0"; sha256="03634gmfr423bjygdxcpgmnh9nm2l86rfmvkvq74qymwc2gl6l6p"; depends=[curl jsonlite tibble]; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; @@ -8401,6 +8618,7 @@ in with self; { regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexr = derive2 { name="regexr"; version="1.1.0"; sha256="1gjv4wl4gjsh5rr0kz057x9j4dhikrm3zzlmxlhd1f9srjdmcdzy"; depends=[]; }; + reghelper = derive2 { name="reghelper"; version="0.3.3"; sha256="0lsdsxi3nawqdzs7k1xma95mmywl86k517cihiv8q2s4maihsja3"; depends=[ggplot2 lme4 nlme]; }; registry = derive2 { name="registry"; version="0.3"; sha256="0c7lscfxncwwd8zp46h2xfw9gw14dypqv6m2kx85xjhjh0xw99aq"; depends=[]; }; reglogit = derive2 { name="reglogit"; version="1.2-4"; sha256="0ma1wddxhmja268ddkpcvskqf4lwq61brswnm600fms8ks7r78d3"; depends=[boot Matrix mvtnorm]; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; }; @@ -8414,8 +8632,8 @@ in with self; { rehh = derive2 { name="rehh"; version="2.0.2"; sha256="00wxx6w9ahddrg3lz14cqyg3dn0rfcxwy1z8arhdp1pn8d48pahw"; depends=[gplots rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; }; - rel = derive2 { name="rel"; version="1.2.0"; sha256="0x68zivcydczq7rxxzjbgif8c4qbmp80nbz78f7292xlbzc39hjx"; depends=[]; }; - relMix = derive2 { name="relMix"; version="1.2.2"; sha256="03mn7rnx2kh7v4alfvkiw3iakxi9dkfnmhgqsdfld3qrijjp1i6y"; depends=[Familias gWidgets paramlink]; }; + rel = derive2 { name="rel"; version="1.3.0"; sha256="11wn28bjsmajvypz77iikwzwhm79pnc7kn15h996y9mxhx20izkd"; depends=[]; }; + relMix = derive2 { name="relMix"; version="1.2.3"; sha256="07fcbvhxdfa94ixxvnrkhlm0xxz7wa1lv7xdjp97ajxxp9fy69yl"; depends=[Familias gWidgets paramlink tkrplot]; }; relSim = derive2 { name="relSim"; version="0.2-0"; sha256="0cqcp7r263sk874l17wz84mzm4b1dxbfbsk74937rcz1wfc623k5"; depends=[Rcpp]; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; relabeLoadings = derive2 { name="relabeLoadings"; version="1.0"; sha256="16gxdrhkaaa33hypnsacn4vd1g3lbqdl3j8p8va54v777c561g81"; depends=[]; }; @@ -8433,6 +8651,7 @@ in with self; { rem = derive2 { name="rem"; version="1.1.2"; sha256="0m0lhv8hc6p0d7nmjig2678n7qrb9c15jkdqrx946f42k1f1dz6f"; depends=[flexsurv Rcpp survival]; }; remMap = derive2 { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; }; rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; }; + remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; }; remix = derive2 { name="remix"; version="2.1"; sha256="0s1gaf7vj08xd4m7lc9qpwvk0mpamabbxk71970mfazx6hk24dr0"; depends=[ascii Hmisc plyr survival]; }; remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; }; remoter = derive2 { name="remoter"; version="0.3-2"; sha256="0r7hm5cdbmkfn8lv07mn0lb1qq1g92l0hznjih1ykymjm3h6qyh0"; depends=[assertthat getPass pbdZMQ]; }; @@ -8443,15 +8662,16 @@ in with self; { repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-1"; sha256="0q6mfrdjpx6nh4xgr5i7ka3xvnx9585xdhni020q4pm05rhimid2"; depends=[spatstat]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; - replyr = derive2 { name="replyr"; version="0.2.3"; sha256="04qjfsb7cq3x993ai4skkzj1p60y616qpmh3v94n260z0syd2gxj"; depends=[dplyr wrapr]; }; + replyr = derive2 { name="replyr"; version="0.2.5"; sha256="084lpqjklk4b9zpcyv9w47g18w6sfxz01vn1kn510p8kzazbcdci"; depends=[dplyr wrapr]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repo = derive2 { name="repo"; version="2.0.2"; sha256="1rgcgl1a0sz3mnj0ny7507bkrlxbbh7ab39jwfm99ssipia12jjh"; depends=[digest]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; + reportROC = derive2 { name="reportROC"; version="1.0"; sha256="0w570vvpwnz78kx4pfgri4lfx7l8xn6zjclimx2rskx5c2z3q5w7"; depends=[pROC]; }; reportRx = derive2 { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; }; reportr = derive2 { name="reportr"; version="1.2.2"; sha256="1fl4hy4ck4aapy152vn9gjd7w5vgvh2gz2ky6p0wwahah7m9b255"; depends=[ore]; }; reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; }; reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; }; - repr = derive2 { name="repr"; version="0.10"; sha256="06wnmc1xvkf6kzb396qjvn0m71lh1mp2q5p2lh4s20i1l42469cr"; depends=[]; }; + repr = derive2 { name="repr"; version="0.12.0"; sha256="1p6a2ryb5iaf4i6nn1iav26bh83wmvncwpk25hyrzd5rxich1bq3"; depends=[]; }; represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="0.1.1"; sha256="0jxsnlspy12dnbpkghkmkr6p6783dhvsk3g9mj7gpn5j74qfk6li"; depends=[callr clipr knitr rmarkdown whisker]; }; @@ -8467,7 +8687,6 @@ in with self; { reshape2 = derive2 { name="reshape2"; version="1.4.2"; sha256="0swvjmc9f8cvkrsz463cp6snd8bncbv6q8yrfrb4rgkr0dhq6dvd"; depends=[plyr Rcpp stringr]; }; reshapeGUI = derive2 { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; }; respirometry = derive2 { name="respirometry"; version="0.3.1"; sha256="1v2i86zz2avyh0q3h2mjq6b967yi26xv7vwa66c390viiqrv4hpg"; depends=[birk lubridate marelac measurements seacarb]; }; - restfulr = derive2 { name="restfulr"; version="0.0.8"; sha256="1dysvw757fcnmz94an8wzcq7h334f3j8lgv4j5w4lhgaa1949m94"; depends=[RCurl rjson S4Vectors XML yaml]; }; restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; }; restorepoint = derive2 { name="restorepoint"; version="0.1.7"; sha256="101lh84jsz84q0ch0j5adsjgza4ggv9xvwbq0d5wik7z5wa39pa6"; depends=[]; }; @@ -8475,20 +8694,21 @@ in with self; { restriktor = derive2 { name="restriktor"; version="0.1-55"; sha256="1yrzx7w14s04ppc16iw2hialx1k6k45ag9702vm8cnf31hm14kxp"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.0.0"; sha256="0a28r0rkg4m6jsrvczkkpdqrca3q5l5pgb4wyz6pvy5scjlvmpls"; depends=[rjson]; }; + reticulate = derive2 { name="reticulate"; version="0.7"; sha256="1jzpipfhnvjcs2vj55d99y86x4y276i6ij3dlz1pngw524079971"; depends=[Rcpp]; }; retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; }; retistruct = derive2 { name="retistruct"; version="0.5.10"; sha256="1wg2a906y09hcqba42hh9r2x59w35dms2aa5mw44avigc1nwm0s2"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; }; - revdbayes = derive2 { name="revdbayes"; version="1.0.0"; sha256="1q6fad3jpvpj0k976010i18ias540k0b2skiw7jk5z1zj9rrxi10"; depends=[rust spatstat]; }; + revdbayes = derive2 { name="revdbayes"; version="1.1.0"; sha256="08rz1w98vm0rckxcg4f9hvpqhzyyk71grvklwl8qbqmm7319bjxz"; depends=[bayesplot rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.2"; sha256="1f871y4wkjznzgwxfbnmrfiafq43cyf0i5hjy68ybxc7bbvfryxc"; depends=[Rcpp RcppArmadillo]; }; - revealjs = derive2 { name="revealjs"; version="0.8"; sha256="0cv410k7nflzkwz7g7zvc86wsmqz0kxlciz7mms7bixrwvqq2w0a"; depends=[rmarkdown]; }; + revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rex = derive2 { name="rex"; version="1.1.1"; sha256="0cs13hqv2wb549rhq84psky401pz8r41ia7c0pnyvhxfa2l6zrr8"; depends=[lazyeval magrittr]; }; rexpokit = derive2 { name="rexpokit"; version="0.24.1"; sha256="143zi6qb0l8vbx87jf58v1zfxqmvv6x4im1knd6q4dpp9gffqs22"; depends=[Rcpp SparseM]; }; rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; }; - rfUtilities = derive2 { name="rfUtilities"; version="2.0-0"; sha256="0jwn1rs4a8y7syyv8sgvkjpi69y5jv59xlznm5a3j4pidj5kxf10"; depends=[randomForest]; }; + rfUtilities = derive2 { name="rfUtilities"; version="2.0-1"; sha256="1g11fr7vwdzmllgcjy7jy3vwgxa9mm18r41p2nckbjkq8yp5kmj3"; depends=[randomForest]; }; rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; - rfishbase = derive2 { name="rfishbase"; version="2.1.1"; sha256="17xkbn930vczxc8b9bljambzhc5j14b7fjswbrl8c8ygdhcd436n"; depends=[dplyr httr lazyeval tidyr]; }; + rfishbase = derive2 { name="rfishbase"; version="2.1.2"; sha256="1w8jk6qfhyzzmxf8qnqqwckm4syrqimi8k6dqmwflgxz6bsxcz0v"; depends=[dplyr httr lazyeval tidyr]; }; rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rflann = derive2 { name="rflann"; version="1.3"; sha256="1y8m52vlrcl69srssd23zgg90yfhh9rryd16hk1dnqg713qhksgm"; depends=[Rcpp RcppArmadillo]; }; rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; }; @@ -8497,18 +8717,17 @@ in with self; { rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3"; sha256="0ff4v7px4wm5rd4f4z8s4arh48hgayqjfpnni2997c92wlsq3d12"; depends=[Rcpp]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; rgam = derive2 { name="rgam"; version="0.6.3"; sha256="0mbyyhhyr7ijv2sq9n7g0vaxivngwf4nbb5398xpsh7fxvgw5zdw"; depends=[Rcpp RcppArmadillo]; }; - rgbif = derive2 { name="rgbif"; version="0.9.7"; sha256="1ajwmxk8pgmgba2vv4pw424zzsjbx0z5ppsavmiy6zjxns7l5rbn"; depends=[data_table geoaxe ggplot2 httr jsonlite magrittr oai tibble V8 whisker xml2]; }; + rgbif = derive2 { name="rgbif"; version="0.9.8"; sha256="17pixyx2wicxdwqz7mziharanqdv865hmb9lz2kfqy1gzpv29jp2"; depends=[crul data_table geoaxe ggplot2 jsonlite magrittr oai tibble whisker wicket xml2]; }; rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; }; - rgdal = derive2 { name="rgdal"; version="1.2-5"; sha256="03bi89n2n80lr0v99s130yl256nf3ww5hr02kpb2lawzz8d3rb7v"; depends=[sp]; }; + rgdal = derive2 { name="rgdal"; version="1.2-6"; sha256="0icg0d1ll5k894f0phjcsybp9dkkspff4f62dn9f7iw20zah78h1"; depends=[sp]; }; rgenoud = derive2 { name="rgenoud"; version="5.7-12.4"; sha256="19y0297fsxggjrdjv8n3a5klbqf8y3mq4mmdz6xx28cz3k65dk4n"; depends=[]; }; rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.0.0"; sha256="0mac4rzgw4lp47rp9nxs7dgw0dzdxnb144an2zj8fcsnvm462vjg"; depends=[httr Rcpp]; }; - rgeos = derive2 { name="rgeos"; version="0.3-22"; sha256="0bl5hwf0gn5dnm5v35hpkp1w7aiy3hzf2k9nrv70j33d7r8gbnif"; depends=[sp]; }; - rgeospatialquality = derive2 { name="rgeospatialquality"; version="0.3.2"; sha256="19g685bz9x7jbn8mmz0yy6mr3qhkjdvvglhfxxh45mjvi2dz5aj8"; depends=[httr jsonlite plyr]; }; + rgeos = derive2 { name="rgeos"; version="0.3-23"; sha256="0p04szj4bcsycj6lgnq65dgsc3w807hdqp5zrd5zxgclhqryq9nm"; depends=[sp]; }; rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; }; rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; }; rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; }; - rgl = derive2 { name="rgl"; version="0.97.0"; sha256="0firba0rvp8kc5w2s1glzk72m2awkg4c2vsd3xhp9b247dvr1aj2"; depends=[htmltools htmlwidgets jsonlite knitr magrittr shiny]; }; + rgl = derive2 { name="rgl"; version="0.98.1"; sha256="11k93b3wkfasx63w0niin1ns1kgzrmjm66la7kvp5rljw3cvwjaz"; depends=[htmltools htmlwidgets jsonlite knitr magrittr shiny]; }; rglobi = derive2 { name="rglobi"; version="0.2.9"; sha256="15kc3gb998ryrnpw6nn87vsg63xknchs0hbl33g9napyj5wjmmiw"; depends=[RCurl rjson]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgp = derive2 { name="rgp"; version="0.4-1"; sha256="1p5qa46v0sli7ccyp39iysn04yvq80dy2w1hk4c80pfwrxc6n03g"; depends=[emoa]; }; @@ -8526,20 +8745,21 @@ in with self; { ridge = derive2 { name="ridge"; version="2.2"; sha256="01yldzzlqg0xqha31l3py62lyq7fw5xfsbmz6ifzff24gqsf029x"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; }; - rinat = derive2 { name="rinat"; version="0.1.4"; sha256="1m5k1wcinm6is3mf86314scgy3xfifz7ly7il5zgqyg9jkkpywbz"; depends=[ggplot2 httr jsonlite maps plyr]; }; + rif = derive2 { name="rif"; version="0.1.0"; sha256="1y7zqxl00wp0nbldrhlqj2fyiflxxhqm7zgjncfwd6nkv1pvkkq9"; depends=[crul data_table jsonlite tibble]; }; + rinat = derive2 { name="rinat"; version="0.1.5"; sha256="14ql90f8wrxz9nlykbzfpar1yfwh7p71vks7vhhn8ys09wvj30zk"; depends=[ggplot2 httr jsonlite maps plyr]; }; rindex = derive2 { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; }; rintrojs = derive2 { name="rintrojs"; version="0.1.2"; sha256="16i6s0km8l22rx2n9kn90z76himfckj387az47snhzbgnwlby3yc"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.4.16"; sha256="030y9hxsdapwsp9lhz013pyz2kgkrymad09bkc6rzykzqswsf61n"; depends=[csvy curl data_table foreign haven jsonlite openxlsx readODS readr readxl urltools xml2 yaml]; }; rioja = derive2 { name="rioja"; version="0.9-9"; sha256="19b8j49qsrvcmhlwdaf1xqvwampn8b02dp876czzcgxhgkxvc6yw"; depends=[gdata lattice mgcv vegan]; }; ripa = derive2 { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; - riskRegression = derive2 { name="riskRegression"; version="1.1.7"; sha256="1db331s67w9i84dji05fjh8ml938w2y694gkyq00h14fkmwr9g4g"; depends=[cmprsk pec prodlim randomForestSRC rms survival]; }; + riskRegression = derive2 { name="riskRegression"; version="1.3.7"; sha256="0zk0k0xx7d72bsrava7n7wadpkx8aaawg44fignmsh8mpzhwwhav"; depends=[cmprsk data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo rms survival]; }; riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; rite = derive2 { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; }; ritis = derive2 { name="ritis"; version="0.5.4"; sha256="04vjbjqp5b9apafns2snh04hplgcfydzn52v63jgllyrn101vrjk"; depends=[data_table httr jsonlite solrium tibble]; }; riv = derive2 { name="riv"; version="2.0-4"; sha256="1c9k62plqgxcgcm2j1s26hqvgww96n6bfjz2yk7m3p2wf8gkkyam"; depends=[MASS quantreg rrcov]; }; - riverdist = derive2 { name="riverdist"; version="0.13.1"; sha256="1xpl47hhddr5xa1px8fxw8l2hicg78cnz5ak2496f0h662g8zb0w"; depends=[rgdal sp]; }; + riverdist = derive2 { name="riverdist"; version="0.14.0"; sha256="1j9yi27zwkgx329rj7bl6284390ajwmpj6fdsh7vz5pac4q4kcds"; depends=[rgdal sp]; }; rivernet = derive2 { name="rivernet"; version="1.0"; sha256="0za5k00k9vivpq4wr1xqc4aw7mlcxhjj2b3iiip1qy13fg7bhbjm"; depends=[]; }; riverplot = derive2 { name="riverplot"; version="0.6"; sha256="0q1icpny8nkxyjhawyjzwrw8qlz0ayn2xyrsqrm4vkxyv6c9xk8z"; depends=[]; }; rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; @@ -8547,15 +8767,16 @@ in with self; { rjade = derive2 { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; }; rjags = derive2 { name="rjags"; version="4-6"; sha256="1bc9bzq31liawg3nzwfczf75vgg56fnqjw0997xvlic4ghgbn96g"; depends=[coda]; }; rje = derive2 { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; }; + rjmcmc = derive2 { name="rjmcmc"; version="0.2.2"; sha256="0c72nxhx57sarrpphlynrbwf2kp8cwd6bb7v39frqb1wi43ah63s"; depends=[coda madness R2jags]; }; rjson = derive2 { name="rjson"; version="0.2.15"; sha256="1vzjyvf57k1fjizlk28rby65y5lsww5qnfvgnhln74qwda7hvl3p"; depends=[]; }; rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; }; rjstat = derive2 { name="rjstat"; version="0.3.0"; sha256="0r772p0a0x6g96k6r26vb6vjxa68mzjslwg71r0wysa9kqhvypm4"; depends=[checkmate jsonlite]; }; rkafka = derive2 { name="rkafka"; version="1.0"; sha256="02h3nlffgd48xm38i2arlrgbilraf6r7k65s35906v33i0kjzrgg"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.0"; sha256="0ss9gjjq92hba6nkhnda0pbm3a5bqm00hy0zbj4kivg5dlsf30q0"; depends=[rJava RUnit]; }; rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; - rkt = derive2 { name="rkt"; version="1.4"; sha256="01c8fwnml1n0sw5lw9p2nz15i1zhxirr0kh39qvjmdiw97c1v1yq"; depends=[]; }; + rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlas = derive2 { name="rlas"; version="1.1.0"; sha256="1hdxkjvsqyng67fyf43ykh27xfi510cdy1i8y2dcrg31mwc7r9rs"; depends=[data_table Rcpp]; }; + rlas = derive2 { name="rlas"; version="1.1.1"; sha256="121pbapz36k7vak715dlhd4yccl0ib26zwccx3m3c3gcjv6qrvba"; depends=[data_table Rcpp]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; }; @@ -8565,12 +8786,12 @@ in with self; { rly = derive2 { name="rly"; version="1.4.2"; sha256="0mppl3y808k9ydn1lwng2bqmdzbbsla2p9p8qk73mp0xyq8iq9sm"; depends=[futile_logger R6]; }; rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; rmapshaper = derive2 { name="rmapshaper"; version="0.2.0"; sha256="0s5av8hic3b61ch6skvcxkpn9s2r0ylfxilxg8i2dvg4dk13qkna"; depends=[geojsonio geojsonlint readr rgdal sp V8]; }; - rmarkdown = derive2 { name="rmarkdown"; version="1.3"; sha256="1vvxyf3zhyxx6k697lia299456hryp8nh3zr0fc27f3107a8mcjf"; depends=[base64enc caTools evaluate htmltools jsonlite knitr rprojroot yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="1.4"; sha256="1dvs9cq88g61wfimifagq6y98yxavxzjan39jvpdsg98mafckq9g"; depends=[base64enc caTools evaluate htmltools jsonlite knitr rprojroot yaml]; }; rmatio = derive2 { name="rmatio"; version="0.11.0"; sha256="0cmlh16nf3r94gpczq0j46g4dgjy9q1c647rqd9i14hvfrpxzcfa"; depends=[lattice Matrix]; }; - rmcfs = derive2 { name="rmcfs"; version="1.2.3"; sha256="14brfil6s9hi0rnw13g8d9xvgnyblqbwvs3iwwwb38lzl8az5rqs"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; + rmcfs = derive2 { name="rmcfs"; version="1.2.4"; sha256="0m9cs5fwqggq1cj78rwvk6nwc4ps6n8sg0rbd8wcnl3l4alb809y"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.1.0"; sha256="0hrlamr527r02vj86xsip5n7gilrb8y33fy0xi1lkc66hf714vgw"; depends=[mnormt psych pwr RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; - rmdformats = derive2 { name="rmdformats"; version="0.3.1"; sha256="0x0vh1mdxb00k6c2m09szpbx4rqhch8p5zslb5jmbbacslicr1sq"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; + rmdformats = derive2 { name="rmdformats"; version="0.3.2"; sha256="128xlbarph2l03b55f4gk8r5gnkjjy3fd1lnihsvz4m1pcg88q4q"; depends=[bookdown htmltools knitr questionr rmarkdown]; }; rmdshower = derive2 { name="rmdshower"; version="2.0.0"; sha256="0prxq0zakcm5lh1ki15d1d267yxr43295zcxigpy011lawccaglm"; depends=[rmarkdown]; }; rmeta = derive2 { name="rmeta"; version="2.16"; sha256="1s3n185kk0ddv8v6c7mbc7cpj6yg532r7is6pjf9vda7317rxywy"; depends=[]; }; rmetasim = derive2 { name="rmetasim"; version="3.0.5"; sha256="0a5pn146ds4biswh59kaddzryd80l54rhcaqsryhmv6pp4ywg5a1"; depends=[ade4 adegenet gtools pegas]; }; @@ -8582,11 +8803,11 @@ in with self; { rms = derive2 { name="rms"; version="5.1-0"; sha256="1ibbpdclxc5vayl7hz176xc03snklx6ymiqzmpvi09y3bv92qnrx"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; - rmumps = derive2 { name="rmumps"; version="5.0.1.11-1"; sha256="1apcn3pqv4fax784fjw2vkbqvkqh3xj3lp4sl59jsn6hbhm4zdnr"; depends=[Rcpp]; }; + rmumps = derive2 { name="rmumps"; version="5.0.1.12-3"; sha256="1smv80kg2ra31rj5pd6lxnqzh9mp17dsdcmwhbhfd58qpsfkkgq1"; depends=[Rcpp]; }; rmutil = derive2 { name="rmutil"; version="1.1.0"; sha256="0f30afqbzrsgbnfpniwhbw4b8hlzc5zyaixvn9giggzwczfnf29k"; depends=[]; }; rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; }; + rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; }; rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; }; - rnbn = derive2 { name="rnbn"; version="1.1.2"; sha256="1b4fx5pi0h8hlikxqk68jk1nimlsh3hp6qr1hb6y1jwq8xa4lyiw"; depends=[httr rgdal rgeos sp]; }; rncl = derive2 { name="rncl"; version="0.8.2"; sha256="17inkk6ajdn1x6g253k2yjyivcryjwn903cd369h1bxlr80amqc0"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.3-2"; sha256="0m5mmhwnrk9ifv91s5ngmlvqqd7bw1n7glzkgk5i72cw0siiwmh0"; depends=[RCurl XML]; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; }; @@ -8598,6 +8819,7 @@ in with self; { rnoaa = derive2 { name="rnoaa"; version="0.6.6"; sha256="1b66jjvh6qk6xn0xfyd2prn4favhkfjmvi0qs76gdcxngy3kph2k"; depends=[dplyr ggplot2 gridExtra httr isdparser jsonlite lubridate rappdirs scales tibble tidyr XML xml2]; }; rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; }; rnrfa = derive2 { name="rnrfa"; version="1.3.0"; sha256="1zrj7y0qh57r7r9c5pspz238w0j1kaicd2l6vcg92lgxi8b9i558"; depends=[ggmap ggplot2 httr plyr rjson sp stringr xml2 xts]; }; + roadoi = derive2 { name="roadoi"; version="0.1"; sha256="0y3aqzrqy31dj06clkjaxrm7b8b3y5zxmjr0pq0f39w4qvsy43ms"; depends=[dplyr httr jsonlite plyr]; }; roahd = derive2 { name="roahd"; version="1.2"; sha256="1b38x7mrld4bnz04d2h3nlk7ksyja9pj9aa6d2k3p8i1k458aqqd"; depends=[robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.0.3"; sha256="0zm1qkrncp4k87mcbn72arr68xpif2y7f9m8smrcma4x52npfpfi"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; @@ -8617,7 +8839,7 @@ in with self; { robustbase = derive2 { name="robustbase"; version="0.92-7"; sha256="13xz4am7y0s0kl5bmbcw3dlhl7ji8h9sjx56wsgmj6r9n35nrggw"; depends=[DEoptimR]; }; robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; - robustlmm = derive2 { name="robustlmm"; version="2.1-2"; sha256="0vgrbvjaix44rixmgd8ljjzvx669gdk5il0f2p8y37ak4s4d2n09"; depends=[ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="2.1-3"; sha256="0a5gk8n8aap14s1d6cmsla5x07cqgy6i266zd0922l93k40b60rk"; depends=[ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; }; robustrank = derive2 { name="robustrank"; version="2016.11-9"; sha256="11x9smfkbq4f0p2n3gxhwzs2xsd019pilxrds601yshz754ccj98"; depends=[]; }; robustrao = derive2 { name="robustrao"; version="1.0-1"; sha256="03bigs7sc7d6ah1dp3mrkklhwih80wbr841klilwkfkajp7q97h9"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; @@ -8635,19 +8857,22 @@ in with self; { roll = derive2 { name="roll"; version="1.0.6"; sha256="0123ihl9b4x65azbr4hvm69q53sh753mgf0j54wq98y0f8kx757v"; depends=[Rcpp RcppArmadillo RcppParallel]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rollply = derive2 { name="rollply"; version="0.5.0"; sha256="01rh4x9352ixdhrqdysapqx5ynksknyf8n230b340pxwaz2d7xhc"; depends=[plyr Rcpp stringr]; }; + rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; + rolypoly = derive2 { name="rolypoly"; version="0.1.0"; sha256="11nf7in6n03675l11ynl4rp20rlzy7jli3m518s4sqqxdm8f8ci7"; depends=[data_table dplyr foreach ggplot2 glmnet MASS Matrix matrixcalc]; }; rootSolve = derive2 { name="rootSolve"; version="1.7"; sha256="08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"; depends=[]; }; rootWishart = derive2 { name="rootWishart"; version="0.3.0"; sha256="0jifnk6ysq0603pjjyn73gcib0yrlf8apk1isl8wm5xbqc91m859"; depends=[BH Rcpp RcppEigen]; }; rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; }; - ropenaq = derive2 { name="ropenaq"; version="0.1.3"; sha256="1r3hp6y8wp397x8al5xx4ly4ydv40ln0s28db0cnnsi2arn4q4mb"; depends=[dplyr httr jsonlite lazyeval lubridate tidyr]; }; + ropenaq = derive2 { name="ropenaq"; version="0.1.4"; sha256="011xcm65005a3hplnflpw75d1smfza8dkvdh3zh7bsdwfpcqysh4"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; + ropercenter = derive2 { name="ropercenter"; version="0.1.0"; sha256="0rp2dwdkl3qlwm8di0q184ppr77zs6i7njyr305pnxmbad119w9d"; depends=[dplyr foreign haven httr rvest stringr xml2]; }; rorcid = derive2 { name="rorcid"; version="0.3.0"; sha256="1c4di3cgx9b86v5fnsahf7gd1shb6klrg4mfyhf4irndn7b1r562"; depends=[httr jsonlite tibble]; }; rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; }; rosetteApi = derive2 { name="rosetteApi"; version="1.5.0"; sha256="1mwvqgfc6l1bqa8ik9nx6mk380hnrplbls8hc5yign8wqlw8rql5"; depends=[httr jsonlite]; }; - rosm = derive2 { name="rosm"; version="0.1.4"; sha256="1p15pmhv52fg8lc0c0yiadc7s0q9s0dz9q6d8544msaxsjwfkpxp"; depends=[abind digest foreach jpeg png rgdal rjson sp]; }; - rospca = derive2 { name="rospca"; version="1.0.1"; sha256="16kd0nr76h4h64rz402k2pqz1qvczzga72wd7f16z713cwz2s2hn"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; - rotationForest = derive2 { name="rotationForest"; version="0.1"; sha256="07my0i84jvmjxvg2ifvsrbc0r5z4s32xi0vfdwrkhhdzdn87h527"; depends=[rpart]; }; + rosm = derive2 { name="rosm"; version="0.2.2"; sha256="0carzc8rn8997vdqgcf7a6lcpmw7dldhnh6n0rjyb09and8yca7r"; depends=[abind curl jpeg plyr png prettymapr rgdal rjson sp]; }; + rospca = derive2 { name="rospca"; version="1.0.2"; sha256="0cw5qwzjkg1a7597vpr1qr34f5azx61jx39g9f5yw9b9iprwwd83"; depends=[elasticnet mrfDepth mvtnorm pcaPP pracma robustbase rrcov rrcovHD]; }; + rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; }; rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; }; - rotl = derive2 { name="rotl"; version="3.0.1"; sha256="18dzg3ysy6aphwbj1c4hzr1qn8q3vvr5r0qnpmidr5rwyhc78phb"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; + rotl = derive2 { name="rotl"; version="3.0.3"; sha256="0pfpgynvdi011m6j6gs98irldpjrdc8rgza36ndk60q2w5z436h4"; depends=[ape assertthat httr jsonlite rentrez rncl]; }; roughrf = derive2 { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; }; rowr = derive2 { name="rowr"; version="1.1.3"; sha256="1f93c2yni956flwnxgphn340pc7p6yagr5xnmhinjgk9kvsd07yh"; depends=[]; }; roxygen2 = derive2 { name="roxygen2"; version="6.0.1"; sha256="0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj"; depends=[brew commonmark desc digest R6 Rcpp stringi stringr xml2]; }; @@ -8660,27 +8885,27 @@ in with self; { rpartitions = derive2 { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; - rpdo = derive2 { name="rpdo"; version="0.2.1"; sha256="0n2lpnphnb5h7y9jszq4m15wymwgv7v2pw5fwbflr0ihvx3i3iac"; depends=[curl datacheckr dplyr lubridate magrittr readr stringr tidyr]; }; + rpdo = derive2 { name="rpdo"; version="0.2.2"; sha256="1yzvi4givrwpbs56p2vf0gciaigq50qq0r0n5lyaqk73azzhnhxc"; depends=[curl datacheckr dplyr lubridate magrittr readr stringr tidyr]; }; rpf = derive2 { name="rpf"; version="0.53"; sha256="16d28i8s7f6ag1jvxw1ns8pi3s1rbxp9z9l13bxsm6cd6kq5jgrq"; depends=[mvtnorm RcppEigen]; }; rpg = derive2 { name="rpg"; version="1.5"; sha256="0hjfzikaryr55xjfw7zjdby4ja59rxq9ikycgbpapvpy2q9py5yp"; depends=[getPass RApiSerialize Rcpp uuid]; }; - rpgm = derive2 { name="rpgm"; version="0.1.3"; sha256="1d2q1g63w2vgq74aminllgsrzci224n1n9q0gw8230y0xgh3ih82"; depends=[]; }; + rpgm = derive2 { name="rpgm"; version="1.0.0"; sha256="03zc87jncbdzmjrl5mfc6wk1q9mkbrs75dnxy4sgim0mryvv53ap"; depends=[]; }; rphast = derive2 { name="rphast"; version="1.6.5"; sha256="1jff94hx7skvd6icbrcyabsvz80sgqqv28vz91mcz5jh6v6afhl3"; depends=[]; }; rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; }; - rpivotTable = derive2 { name="rpivotTable"; version="0.1.5.20"; sha256="1aqk0afw2vjb7d75n9imp0dc3nq1w94n3r9fd3k1zsmia8ds8dh3"; depends=[htmlwidgets]; }; + rpivotTable = derive2 { name="rpivotTable"; version="0.2.0"; sha256="0h7za8bmyg7b150l7a2jz6czxdh4gi0q0gv6ddpdlgk86slw9nmh"; depends=[htmlwidgets]; }; rplos = derive2 { name="rplos"; version="0.6.4"; sha256="0jqvm212clh02g9sk239l467xg0b83c1zbnhfwgzmvbvk630na1b"; depends=[dplyr ggplot2 httr jsonlite lubridate plyr reshape2 solr whisker]; }; rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; }; rpms = derive2 { name="rpms"; version="0.2.0"; sha256="15l7n9qddzk71s0si0mxmpzvl2h0sdb2z2x058cif4i4kgly9h7d"; depends=[Rcpp RcppArmadillo]; }; rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; }; rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; }; rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; }; - rpostgis = derive2 { name="rpostgis"; version="1.1.1"; sha256="0bir893izyx8791m39fm9ykwdp9a6n3mgphx80i7gs0wsw5z7bv3"; depends=[DBI raster rgeos RPostgreSQL sp]; }; + rpostgis = derive2 { name="rpostgis"; version="1.2.0"; sha256="1p77706qan77f6nw93hkgjscfiby50m581cq7mpaib5xjxw4w37g"; depends=[DBI raster rgeos RPostgreSQL sp]; }; rpostgisLT = derive2 { name="rpostgisLT"; version="0.4.0"; sha256="108payblzqiqy4i4w5hwv2v45rmhw1lylkc8mdkfyg64cx7kl7pp"; depends=[adehabitatLT DBI rpostgis RPostgreSQL sp testthat]; }; rpql = derive2 { name="rpql"; version="0.5"; sha256="1d5mr04jk08l617zkqn13njglwj0w9an1rix937bcxw69blshahi"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm]; }; rprev = derive2 { name="rprev"; version="0.2.3"; sha256="14p79f0mkvgwk8bwjnr7gvkvs8c632z7hddcyyrwldpilwyjnsgc"; depends=[doParallel dplyr foreach ggplot2 lazyeval magrittr rms survival tidyr]; }; rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="1.2"; sha256="1fgyxv1zv04sllcclzz089xl6hpdzac7xk61l0l4acb7rqsx5d18"; depends=[backports]; }; - rpsftm = derive2 { name="rpsftm"; version="1.0.2"; sha256="0h539wdj255fynwhjvv7kzl8pfwfvqiji35bp3h55m5q09w77n98"; depends=[ggplot2 survival]; }; + rpsftm = derive2 { name="rpsftm"; version="1.1.0"; sha256="028y67pri687xwxf2k32qhyfz45gv49aj3qm3y67c5znsdagj2c0"; depends=[ggplot2 survival]; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.1"; sha256="0vwwdr0z1yyajisiy4ib1zksl0s1wjqf4pp9ymy8g5gnn1j2dx8i"; depends=[lme4 pbapply]; }; rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; }; @@ -8696,7 +8921,7 @@ in with self; { rredlist = derive2 { name="rredlist"; version="0.3.0"; sha256="1w59rqwgx3hr9icw8pzwc95117vrqkj3mq197kp0qy8xbkf83h8v"; depends=[crul jsonlite]; }; rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; }; rrepast = derive2 { name="rrepast"; version="0.5.0"; sha256="1df6dgbfrh9ks4z22lm25m8v2baq78nq32f8v1cfkq1ygr6n2k99"; depends=[digest ggplot2 gridExtra lhs rJava sensitivity xlsx]; }; - rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.1"; sha256="0zr3c84248myizrf3gmwkkybzlhk65j97dhg77cv2hbr7sdbjz2b"; depends=[eha mc2d msm tkrplot]; }; + rriskDistributions = derive2 { name="rriskDistributions"; version="2.1.2"; sha256="1d9dwgw8la8wwq9cdnl7qibkzbdl4cj0qvf05x7w13ip973dwpaq"; depends=[eha mc2d msm tkrplot]; }; rrlda = derive2 { name="rrlda"; version="1.1"; sha256="06n9jah190cz25n93jlb5zb0xrx91bjvxgswwdx9hdf0fmwrpkvz"; depends=[glasso matrixcalc mvoutlier pcaPP]; }; rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; @@ -8706,7 +8931,6 @@ in with self; { rsconnect = derive2 { name="rsconnect"; version="0.7"; sha256="104c83qq12kp1hzfs7k6nzlripsydwidqgdd3kakc4wy6dsr8bhn"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; }; rscopus = derive2 { name="rscopus"; version="0.4.6"; sha256="0s8ahdp884yy2hpa5kq9d4kcnr0hx662wp7h0qi399pc0y1rydwm"; depends=[httr plyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.3.5"; sha256="1fhcp8xdhgjgpbfwc6bygq0z1z49w9c3bh12s8rml30597b8gc26"; depends=[dplyr jsonlite lazyeval magrittr]; }; - rscproxy = derive2 { name="rscproxy"; version="2.0-5"; sha256="1bjdv7drlnffcnyc0j8r22j7v60k1xj58bw8nk9l8wvnmngrjz86"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.5-8"; sha256="0f0hc2v9g7gxqcfhx3m7fawsvlba3jx666f675263d8vhdc9f311"; depends=[plyr RCurl XML]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; @@ -8715,18 +8939,19 @@ in with self; { rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; }; rsig = derive2 { name="rsig"; version="1.0"; sha256="129k78i8kc30bzlphdb68vv3sw2k6xyiwrhw08vhzz6mf3jxlqsh"; depends=[BBmisc glmnet Matrix superpc survcomp survival]; }; rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; }; - rslurm = derive2 { name="rslurm"; version="0.3.1"; sha256="1mvs64g9j1ml8as18na39app1n8lk3m1qgki68nhkas81bmiq24a"; depends=[whisker]; }; + rslurm = derive2 { name="rslurm"; version="0.3.3"; sha256="1rlmimsd63y5ga0pz74936zbwlx07zqj9bwbz6i68lb4p0kca72v"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.8"; sha256="1hnlaj5jwqxki07b1kzl716qkmqwap57cch2lwsb6gqqsjir8xfx"; depends=[estimability lsmeans]; }; rsml = derive2 { name="rsml"; version="1.3"; sha256="0a1y41jq0yzr19mb2scwhlp9gx5vngm4q12yxp1fcwk2cqhnsda6"; depends=[rgl XML]; }; rsnps = derive2 { name="rsnps"; version="0.2.0"; sha256="10g1b2i2mp0b4p78iiy83sz2jwz73xfjkhc6ih4ag2wmbdmwf9pb"; depends=[httr jsonlite plyr stringr XML]; }; + rsoi = derive2 { name="rsoi"; version="0.2.1"; sha256="18hjaz26in2h6n4vx57rczzfpr5fbx9i7ph58p2gyh6j8972a04i"; depends=[lubridate]; }; rspa = derive2 { name="rspa"; version="0.1.8"; sha256="1zgk1v1yk9c51wbsl3skqfrznqj84146dzfwg7q3jy2hpdgf1cg6"; depends=[editrules]; }; - rsparkling = derive2 { name="rsparkling"; version="0.1.1"; sha256="1mjlm4gv0551nz0n6qd0596jpn6yc5a4pdqn7h5087gg9cpay0sv"; depends=[h2o sparklyr]; }; - rsq = derive2 { name="rsq"; version="0.6"; sha256="0qc5mkz7b68al3iahsbv45imkzabbsykd95w1yd7gfcrw0qk592m"; depends=[]; }; + rsparkling = derive2 { name="rsparkling"; version="0.2.0"; sha256="1d3p4zcff41m7qjx4j8bs0dvaal5j20sm4y8fipfnjizbdk72vb7"; depends=[h2o sparklyr]; }; + rsq = derive2 { name="rsq"; version="1.0"; sha256="151f7pngx54wpawb5hchacj0rbymdzyki16fkj9291cfz1cqbcx9"; depends=[MASS]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; - rstan = derive2 { name="rstan"; version="2.14.1"; sha256="035gph171z3ydl321a46p9rl5dbzaw5vn4qa7mj20dmvg90py99k"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.14.1"; sha256="0hwiqn4swwg3b3g4szkrc1srqiibn227sb7rcqknh9fs6b8b78s5"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders]; }; - rstantools = derive2 { name="rstantools"; version="1.1.0"; sha256="14kf5faz7n7r08dxsd4dw6as63lbb2fsyqiknn48fh2kp36ykpwj"; depends=[]; }; + rstan = derive2 { name="rstan"; version="2.15.1"; sha256="1svixidzqcdwpg6j1cfvy2xql99vw3fpvf78n4zp2r6kpynnhgrg"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; }; + rstanarm = derive2 { name="rstanarm"; version="2.15.2"; sha256="0x5p7hwrdn1lpyb9lb50mw5ffb34wkc13afmpssn9xsxi88zr1lb"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders]; }; + rstantools = derive2 { name="rstantools"; version="1.2.0"; sha256="1b0x0diik2zm6kfdbv3gg48mha3x7lq88f3rjmsy4ql26yvr155w"; depends=[]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="0.10"; sha256="0b2sdgpb3hzal34gd9ldd7aihlhl3wndg4i4b3wy6rrrjkficrl1"; depends=[]; }; rstpm2 = derive2 { name="rstpm2"; version="1.3.4"; sha256="0vm5w597lz3zzklm21avxm88lqgrn9k2hlfh4yvmqk4vmwp4qkcc"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; }; @@ -8735,7 +8960,7 @@ in with self; { rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; }; rsunlight = derive2 { name="rsunlight"; version="0.4.2"; sha256="1m4ya960zjqxbjcjj42gjmdy40ac7m471fkfsd0r6w675qbiiw87"; depends=[httr jsonlite plyr stringr]; }; rsvd = derive2 { name="rsvd"; version="0.6"; sha256="0vrsgxbbk5n51i1s80bixcxph2ws86zpbdqs81yfvnzghrc99nas"; depends=[]; }; - rsvg = derive2 { name="rsvg"; version="1.0"; sha256="1584g43jx21d2di6zn4ra5j916a5bqzpni223prwn3nii5244f3x"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="1.1"; sha256="17jfspbvlfp2cdw9s4m128rqw5kvb7i5h335569n3518spqmgi4f"; depends=[]; }; rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; }; rtable = derive2 { name="rtable"; version="0.1.5"; sha256="1a9x0qcbp96wg86nbvx25yh5viwvf5sqb41z3cvr5i7br2ji8n5i"; depends=[knitr ReporteRs shiny tidyr xtable]; }; rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; }; @@ -8749,8 +8974,8 @@ in with self; { rtiff = derive2 { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; }; rtimes = derive2 { name="rtimes"; version="0.3.0"; sha256="141i8zjsdzk7jdjf9wf3pa6d9ixjg1m4chk44iznmjpig4gbq2n9"; depends=[dplyr httr jsonlite]; }; rtip = derive2 { name="rtip"; version="1.0.0"; sha256="1xkw0m4fnwbsqqyhvxhsia3hlpjb2qhs6y0c4g7f7qa7f0ibcbja"; depends=[boot ggplot2 mvtnorm plyr]; }; - rtk = derive2 { name="rtk"; version="0.2.4.1"; sha256="1k1h5v0610bnxpz3fciim0ixjlrjzqlhx9h8b8zsz306l84bnxy8"; depends=[Rcpp]; }; - rtkore = derive2 { name="rtkore"; version="1.2.0"; sha256="1kchqxjyqz5vz3kfljvjhx42yahc58m99ifv8yijlffi68k486vl"; depends=[Rcpp]; }; + rtk = derive2 { name="rtk"; version="0.2.5.1"; sha256="17wqlplpqc9df5lg48xvqiny9wvn2h0drl8rj02iv50m14vrvpk1"; depends=[Rcpp]; }; + rtkore = derive2 { name="rtkore"; version="1.2.2"; sha256="139an16z4aipq94vxa9mjbrwh934qp5ql9f4ii263dswrala2h5s"; depends=[Rcpp]; }; rtop = derive2 { name="rtop"; version="0.5-10"; sha256="0h35f3wpvsdvvymb2sl8g2wljzqzgis66bkf42njhxry7wavqf17"; depends=[gstat rgdal sp]; }; rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; }; rtrie = derive2 { name="rtrie"; version="0.1.1"; sha256="092ir1bm193x8ah2zbyik6vfavdqwzkda5kx4m7mv1gxcy4s64vr"; depends=[]; }; @@ -8772,25 +8997,23 @@ in with self; { rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.6"; sha256="075lfbqjzi103wh87i78x914iyrvrmmdz8z9f6391rbpip6bjpr3"; depends=[]; }; - rvcheck = derive2 { name="rvcheck"; version="0.0.5"; sha256="045anzzp3laavxm3sqnyfnnc13nhryv15w63qawr9y81alg91397"; depends=[devtools]; }; + rvcheck = derive2 { name="rvcheck"; version="0.0.8"; sha256="0n3pijlaxhvz692k56z5hx2cbffq3qmyll3dckp6jdv5pbbp4ywy"; depends=[]; }; rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; }; rvertnet = derive2 { name="rvertnet"; version="0.5.0"; sha256="0bvf76i11kkjdy0vvx2fbv478nbzybljsw40l9mg3i9dcdmz3gjc"; depends=[dplyr ggplot2 httr jsonlite maps]; }; rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; }; - rvg = derive2 { name="rvg"; version="0.1.2"; sha256="173fklnnizbh475qk9k7ff9zk96j1ljnbyhj8p494ys3jk4na0hw"; depends=[gdtools R_utils Rcpp xml2]; }; + rvg = derive2 { name="rvg"; version="0.1.3"; sha256="0zf976imapnd0x2bwf8fwnaiam88a57a2afdjsy77nzmiigxsqnn"; depends=[gdtools officer Rcpp xml2]; }; rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; }; rvsel = derive2 { name="rvsel"; version="0.2.1"; sha256="04whdpn0cg60y7f744qlxg60hczww7asq3c8kmf379xxf5p5zdpq"; depends=[]; }; rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; - rwirelesscom = derive2 { name="rwirelesscom"; version="1.4.3"; sha256="1q4s9m9k6i7x2vq5dwq7950sbq03i8ff6qk8l30x77689kpflqcb"; depends=[ggplot2 Rcpp]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwt = derive2 { name="rwt"; version="1.0.0"; sha256="112wp682z4gkxsd3bqnlkdrh42bfzwnnhzyangxi2dh0qw63bgcr"; depends=[matlab]; }; rwty = derive2 { name="rwty"; version="1.0.1"; sha256="1w66jlcbn8javlr2l0qinah3cxxadpjzvbz088saysyg277ikfxm"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; - rwunderground = derive2 { name="rwunderground"; version="0.1.0"; sha256="10m0wgym6rdrgvmhh79q4jf0lh8wlrg04mvq0yvgnqfgcxn4rmir"; depends=[countrycode dplyr httr]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; }; - rzmq = derive2 { name="rzmq"; version="0.9.0"; sha256="01fw6xpjq3h1ss38swivnp3rv7sh2lrdp0qcxz1ff7yln9sm5qsm"; depends=[]; }; + rzmq = derive2 { name="rzmq"; version="0.9.1"; sha256="0k0b7dija04c9hyxpspqgz96l565b83h76lh7csfsf43da2za5bx"; depends=[]; }; s2 = derive2 { name="s2"; version="0.1-1"; sha256="1k6329ra119ygb0z496894s4yra7f4dsg1ghpdk8k3ashd9yh6gd"; depends=[Rcpp]; }; s20x = derive2 { name="s20x"; version="3.1-19"; sha256="1v16j3c38iak1wf887s02233g27fvwb06dyvdbg15g4dqh09sn7s"; depends=[]; }; s2dverification = derive2 { name="s2dverification"; version="2.8.0"; sha256="13cjzxrjwahjhdw5q8lpbwgywgswqrcnj7rkff9kraan9lj83bkk"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; @@ -8802,14 +9025,14 @@ in with self; { sExtinct = derive2 { name="sExtinct"; version="1.1"; sha256="1l6232z6c4z3cfl1da94wa6hlv9hj5mcb85fj1y0yparkvvl8249"; depends=[lattice]; }; sFFLHD = derive2 { name="sFFLHD"; version="0.1.1"; sha256="19zhx0rc6h44301a5q68r9jbxzh12ci3387d1c319vdiw05nschy"; depends=[conf_design DoE_base]; }; sGPCA = derive2 { name="sGPCA"; version="1.0"; sha256="16aa5jgvkabrlxaf1p7ngrls79mksarh6di3vp26kb3d3wx087dx"; depends=[fields Matrix]; }; - sNPLS = derive2 { name="sNPLS"; version="0.1.4"; sha256="04q6a7b27lmc9racc8g1f5wrz1qa322crsa7kdb4r8kdpkm9pji6"; depends=[car ks MASS Matrix pbapply plotrix rgl]; }; + sNPLS = derive2 { name="sNPLS"; version="0.1.5"; sha256="1gkpgz57pyxhrllbb4p1w79nrzqfh6hx05nn5hj7d7ans9qsgw53"; depends=[car ks MASS Matrix pbapply plotrix rgl]; }; sROC = derive2 { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; }; sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; }; sValues = derive2 { name="sValues"; version="0.1.4"; sha256="0y2cv3wls2y3zpbm2d098xj5n098yjl32yi7mwha6mhfwfa4y99l"; depends=[caTools ggplot2 reshape2]; }; saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; }; sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; }; saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; - sadists = derive2 { name="sadists"; version="0.2.2"; sha256="1w42j0g3yi3mqamkl9z3v103vv2hy2l1cy5ijbam0yddsaqqig3b"; depends=[hypergeo orthopolynom PDQutils]; }; + sadists = derive2 { name="sadists"; version="0.2.3"; sha256="17jlzx5h5l1w7riz0rs99w31n6lxnnxwzbzqn2z5r292j2nxvmkw"; depends=[hypergeo orthopolynom PDQutils]; }; sads = derive2 { name="sads"; version="0.3.1"; sha256="17ndy8li01qgd86l3wvmkwjs2iz982bmrkxikv6y69s8mznd82qp"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.1"; sha256="1izww27cqd94yrfbszbzy44plznxsirzn0752ag7xw7qzm5ywp3d"; depends=[MASS nlme]; }; sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; }; @@ -8842,6 +9065,7 @@ in with self; { saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; }; saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; }; saws = derive2 { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; }; + sbart = derive2 { name="sbart"; version="0.1.0"; sha256="0d74dmsxphsi548k81yihf7icay7fy5v6qxv3champw3j1fwkh3g"; depends=[LaplacesDemon msm Rcpp]; }; sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; }; sbgcop = derive2 { name="sbgcop"; version="0.975"; sha256="0f47mvwbsym4khwgl0ic3pqkw3jwdah9a48qi3q93d46p2xich61"; depends=[]; }; sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; }; @@ -8852,6 +9076,7 @@ in with self; { scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; }; scagnostics = derive2 { name="scagnostics"; version="0.2-4"; sha256="0fhc7d2nfhm8w6s6z1ls6i8d7c90h4q7rb92rz8pgq3xh031hpcf"; depends=[rJava]; }; scales = derive2 { name="scales"; version="0.4.1"; sha256="1lqccfmqdwrw0cjyqvw2zvgpk2jvnqrfb303l1raqyyf3zxqhav4"; depends=[dichromat labeling munsell plyr RColorBrewer Rcpp]; }; + scalpel = derive2 { name="scalpel"; version="1.0.0"; sha256="0zk81q2f49vrbprlvjq3q4s2ak7rrlpj55rrfkqr8nq1vvi6nxd2"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; }; scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; }; scam = derive2 { name="scam"; version="1.2-1"; sha256="039iym85khym5m6g712lbd5s0c6dfw9xlpvlj29rwlcl1dkr1g7v"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; }; @@ -8859,8 +9084,9 @@ in with self; { scape = derive2 { name="scape"; version="2.2-0"; sha256="0dgbh65fg6i5x4lpfkshn382zcc4jk1wp62pwd2l2f59pyfb92a3"; depends=[coda Hmisc lattice]; }; scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatterD3 = derive2 { name="scatterD3"; version="0.8.1"; sha256="1fyk2z8ari73nbah2r4c677nm3v0whfia6sh39gr674cczp6vc8q"; depends=[digest ellipse htmlwidgets]; }; - scatterpie = derive2 { name="scatterpie"; version="0.0.6"; sha256="11ks8rarcgk8hj9vnhlj01v6z2kid0lv2nkkbqgj8gbcni9wgawr"; depends=[ggforce ggplot2 tidyr]; }; - scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-38"; sha256="1mw1v725cdq24lfygjjmx3vmxzr2zpd332v0lham7g0p4r7lc8pb"; depends=[]; }; + scatterpie = derive2 { name="scatterpie"; version="0.0.7"; sha256="0bfzhpakdwlps900dnsp6b5hrrmi02jcmk31afp4pixyj3r7h3c8"; depends=[ggforce ggplot2 tidyr]; }; + scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-39"; sha256="02fjwb2832s2059iiaw3n9ka8i5s94z80gz4bzwl93vp8sjrp6sh"; depends=[]; }; + scclust = derive2 { name="scclust"; version="0.1.0"; sha256="122i4w8hij6715p8m6yxlcigg1xaygndxfzric3b8lpbbb675v15"; depends=[distances]; }; scdhlm = derive2 { name="scdhlm"; version="0.3.1"; sha256="1b5x4kqvmkpb8wbgfhnwqakisw6hfnvama2bsnd8kvw4alfanxhm"; depends=[nlme]; }; scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; schoRsch = derive2 { name="schoRsch"; version="1.4"; sha256="19k34i74ira71v0r5gz9rfnbadnjzi0wpxcm4zqqn7y6jpmfbd11"; depends=[]; }; @@ -8868,7 +9094,7 @@ in with self; { schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; schumaker = derive2 { name="schumaker"; version="0.3"; sha256="0y2jyy3za7xi8l9kc0z35mqc7a29lbxmaqgax8frljmqsnwkwwhp"; depends=[]; }; schwartz97 = derive2 { name="schwartz97"; version="0.0.6"; sha256="0l34f30l75zrg3n377jp0cw7m88cqkgzy6ql78mrx8ra88aspfzn"; depends=[FKF mvtnorm RUnit]; }; - scidb = derive2 { name="scidb"; version="1.2-0"; sha256="17y1bml8kb896l3hsw356qdj25sfbdvm10dyxhaafdgcbp5ywcrn"; depends=[digest iterators Matrix RCurl zoo]; }; + scidb = derive2 { name="scidb"; version="2.0.0"; sha256="079akdsxxjnca5jsv0grw1c2nd3dl368xhy4mzm94mh5j6ghi57l"; depends=[bit64 curl data_table digest openssl]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scio = derive2 { name="scio"; version="0.6.1"; sha256="0h15sscv7k3j7qyr70h00n58i5f44k96qg263mxcdjk9mwqr0y65"; depends=[]; }; sciplot = derive2 { name="sciplot"; version="1.1-0"; sha256="0na4qkslg3lns439q1124y4fl68dgqjck60a7yvgxc76p355spl4"; depends=[]; }; @@ -8887,18 +9113,19 @@ in with self; { scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; }; scrypt = derive2 { name="scrypt"; version="0.1.1"; sha256="0lgnmag2yr5r67kqni2mpbvflqzaq8icilcxqja7c8fzw6xxzjrx"; depends=[Rcpp]; }; scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; }; - scuba = derive2 { name="scuba"; version="1.8-0"; sha256="1hlgvbcx7xmpaaszyqvhdwvwmf8z209jkf6aap205l3xkkc692c4"; depends=[]; }; + scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; }; scvxclustr = derive2 { name="scvxclustr"; version="0.1"; sha256="0d72hr9jcw513mapx1plif07b4qsi9b9pad6dwrqlh3z8kb8mn4j"; depends=[cvxclustr gglasso igraph Matrix mclust Rcpp RcppEigen]; }; sdPrior = derive2 { name="sdPrior"; version="0.3"; sha256="0d3w75p3r2h07xhp7fj4si1y4sav8vs0lq6h2h4fn4f2inn3l0vl"; depends=[caTools GB2 MASS]; }; sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; }; sdat = derive2 { name="sdat"; version="1.0"; sha256="1rp2s3y44f3vj0p16j1k2rrs44kmnzy9k0lpcm9ga801nbv93saz"; depends=[]; }; - sdcMicro = derive2 { name="sdcMicro"; version="5.0.0"; sha256="1ppqs47p4zha30axgwyvf0dhfrh2hjhi6cgwchikl9k9zwdh4byv"; depends=[car cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS xtable]; }; - sdcTable = derive2 { name="sdcTable"; version="0.22.1"; sha256="0mcvymzabflhd0akczczv1cmxaakknqxjma5vdv75043rv151hqr"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; + sdcMicro = derive2 { name="sdcMicro"; version="5.0.1"; sha256="1krl7685wpfgibf8hwf9ni483nvwgsi3pmdjlgpd2cbqsrmnlc45"; depends=[car cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS xtable]; }; + sdcTable = derive2 { name="sdcTable"; version="0.22.4"; sha256="1pshzqns4d2kd388rf2kz1y8q3gjm2n77c2bdapbmf2v8mkw2vmd"; depends=[data_table lpSolveAPI Rcpp Rglpk slam stringr]; }; sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; }; sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; }; sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; }; sdef = derive2 { name="sdef"; version="1.6"; sha256="1y1l5fl7lh636kyvc2hwssdnifl055nrz3riplj4qqw88lkm1mk8"; depends=[]; }; sdm = derive2 { name="sdm"; version="1.0-32"; sha256="1h20ap4q7bq2y92mrggir8fq4dlw6hz0pvpaqnj2v8fxng50fpjx"; depends=[raster sp]; }; + sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.5"; sha256="0hnfhdrvn78yl4shrk4y42j4wjrfrglhnkqsa56kgki4hnq88d29"; depends=[R_utils raster rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; }; @@ -8916,6 +9143,7 @@ in with self; { secr = derive2 { name="secr"; version="2.10.4"; sha256="034ad8w9p478552ax7gr5yp3fh6r968b92rmisjnags8x1vsynda"; depends=[abind MASS mgcv nlme raster sp]; }; secrdesign = derive2 { name="secrdesign"; version="2.4.0"; sha256="0v9d94ra614884imv29qwhr4zkx3dzssdpz8nv86k1kigx51w1xp"; depends=[abind secr]; }; secrlinear = derive2 { name="secrlinear"; version="1.0.5"; sha256="084d0spshf3lh1m50kyb0r8x9lz4yrfj6b7snywffxhqyjw147hf"; depends=[igraph maptools MASS secr sp]; }; + secure = derive2 { name="secure"; version="0.5"; sha256="16pv5m7rrcs8hcjj3kylq7smyzf2qk8rkg9m1b421w0ac7lg04x1"; depends=[MASS Rcpp RcppArmadillo]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; }; seeg = derive2 { name="seeg"; version="1.0"; sha256="1d45vl075p4qbd74gpaa8aw1h82p9n633fym10yp9bmcv4gwksg6"; depends=[car sgeostat spatstat]; }; @@ -8926,7 +9154,7 @@ in with self; { segmented = derive2 { name="segmented"; version="0.5-1.4"; sha256="1740cvx2q4v23g4q0zkvg50s5bv8jcrlzzhm7fac4xn0riwmzp5i"; depends=[]; }; seismic = derive2 { name="seismic"; version="1.0"; sha256="02d11c3filzghi8cvryikaidmk40d4z3qxsqs7bjdhxyf814caw8"; depends=[]; }; seismicRoll = derive2 { name="seismicRoll"; version="1.1.2"; sha256="183lx9lgmi06lv1l4gbmlmblfgjzhph4aavdnxrykpp6122hsq61"; depends=[Rcpp]; }; - sejmRP = derive2 { name="sejmRP"; version="1.3"; sha256="0qrlzanmqqqwsb83rh2wys4jl2mz1ijwznnx32i2gk4h1nvkwxbx"; depends=[DBI dplyr RPostgreSQL rvest stringi XML xml2]; }; + sejmRP = derive2 { name="sejmRP"; version="1.3.4"; sha256="1j3sadbp12fip3n96s0hx1sg4kzwx8z01p1c905kv8gffhkz9bh0"; depends=[cluster DBI dplyr factoextra RPostgreSQL rvest stringi tidyr XML xml2]; }; selectMeta = derive2 { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; }; selection = derive2 { name="selection"; version="1.0"; sha256="1w2mzb16frcbh55icc5g8ai3hri9j6dhp7h0kc96iaspphnfw4n8"; depends=[fifer norm]; }; selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; @@ -8939,14 +9167,14 @@ in with self; { sem = derive2 { name="sem"; version="3.1-8"; sha256="17qid9jvkmccgnw56jwxmkc6hmanc7vp1c6acj5nv9j47f4bc3jv"; depends=[boot MASS matrixcalc mi]; }; semGOF = derive2 { name="semGOF"; version="0.2-0"; sha256="1lsv72yaza80jqadmah7v2cpfqfay57y12hcz6brvia6bmr5qagb"; depends=[MASS matrixcalc sem]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; - semPlot = derive2 { name="semPlot"; version="1.0.1"; sha256="0sdp970qb4mz5vzncfmqxvg1z12gmiyqi3yaz9x2drm3rgzavy83"; depends=[colorspace corpcor igraph lavaan lisrelToR plyr qgraph rockchalk sem XML]; }; + semPlot = derive2 { name="semPlot"; version="1.1"; sha256="0fzz580an7mmq6vycxbcvfdqbii0qz0nghlidb6in05j8dppsnsn"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem semTools XML]; }; semTools = derive2 { name="semTools"; version="0.4-14"; sha256="1j1chman14i908c009lf0jgdmrrb8avgp8nif1i9wlj6vgif890c"; depends=[lavaan]; }; semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; semds = derive2 { name="semds"; version="0.9-2"; sha256="0ig8b7ii1c8av0il904b71lzr8lqdiibwf16yj5dp8n4xc80bryh"; depends=[minpack_lm pracma]; }; - semiArtificial = derive2 { name="semiArtificial"; version="2.0.1"; sha256="1bjjqcm6r3hxj5752ywdzllh7wr4rwzqlrkf50wpdl05za3fbfd9"; depends=[cluster CORElearn dendextend fpc ks logspline MASS mclust nnet robustbase RSNNS timeDate]; }; + semiArtificial = derive2 { name="semiArtificial"; version="2.2.5"; sha256="1m8kwjhqjpqjzz22caiwpb4nb70d8y0ssf9j4rfyyh530x2q2k1m"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; semisupKernelPCA = derive2 { name="semisupKernelPCA"; version="0.1.5"; sha256="1v8wdq63b1gqicj8c9a24k0w7cc0bkg0mnc9z5mklsfcl7g0g6k9"; depends=[datautils irlba]; }; semsfa = derive2 { name="semsfa"; version="1.0"; sha256="1x227rigjk9glq5x9lp6xxcf3y9i73rv3mrj7lkr2ycnsx8zz57h"; depends=[doParallel foreach iterators mgcv moments np]; }; - semtree = derive2 { name="semtree"; version="0.9.9"; sha256="1a66xiy0p9q3bmppc8rhnd0lfip2vxjjqi9094zqvnclkznrc9ar"; depends=[bitops digest OpenMx rpart rpart_plot sets]; }; + semtree = derive2 { name="semtree"; version="0.9.10"; sha256="1xx86pqzilxpd6zki7zd846vf13dcphn9d478hjjn2zlvzlxhfkz"; depends=[bitops digest OpenMx rpart rpart_plot sets]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; }; @@ -8955,25 +9183,26 @@ in with self; { sensitivity = derive2 { name="sensitivity"; version="1.14.0"; sha256="042bwjp906jmhsp09n03nf6xkzfvgad13f0bkm3nk5qf9xfjfszm"; depends=[boot]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; - sensitivityfull = derive2 { name="sensitivityfull"; version="1.0.0"; sha256="162gf45gby7kz93j6xbv2fhzcmjqk55897m58xf64csphgfv6ibv"; depends=[]; }; + sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; }; sensitivitymv = derive2 { name="sensitivitymv"; version="1.3"; sha256="1bxf85q91smnsl2lsig43vk0c63c805d8ry1xh3w6q675djj14ad"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="1.1"; sha256="1bknnfkkqgmchabcjdfikm37sn5k41ar8lpnjw58i8qh7yzq237i"; depends=[]; }; + sensors4plumes = derive2 { name="sensors4plumes"; version="0.9"; sha256="1fyf020bl6p9wdvnsfkmdlllhdwj3l4h9h2paq9dwd7hsr7av48p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; - sentimentr = derive2 { name="sentimentr"; version="0.4.0"; sha256="0sfr1bgv8lap91bw9q7z4d1cn64kmn2iqf8mkxxcp9jcskb0qp0z"; depends=[data_table ggplot2 stringi syuzhet]; }; + sentimentr = derive2 { name="sentimentr"; version="1.0.0"; sha256="1hniwvm2mr85hs6v9pvs04n73a13nf0qkikxkz9bcb3hfgkk8v6c"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean]; }; separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; }; seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; }; seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; }; - seqHMM = derive2 { name="seqHMM"; version="1.0.6"; sha256="04cfii5i337g11qdrhq3sflas2vv8avy4qylxvridxqibvk70pjz"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; + seqHMM = derive2 { name="seqHMM"; version="1.0.7"; sha256="1pap3i2zxgnxr3frw648hkzbhn4rnz20lzhhvrp89vhc77vh4ds1"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; }; seqPERM = derive2 { name="seqPERM"; version="1.0"; sha256="1i8ai4gxybh08wxjh96m6xlqxhh7ch0xihjs879snmy4zqfi0pap"; depends=[]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; - seqinr = derive2 { name="seqinr"; version="3.3-3"; sha256="1n1a2zqv1s5415fz2vgqys3nm282d6lkglbd1vprx4k76lp55gfn"; depends=[ade4 segmented]; }; - seqminer = derive2 { name="seqminer"; version="5.7"; sha256="0p75wyl70cvp36mwg5y74nv573j1gdqi15ac2a7xf61jmsq7ycpy"; depends=[]; }; + seqinr = derive2 { name="seqinr"; version="3.3-6"; sha256="13d0qxm2244wgdl2dy2s8vnrnf5fx4n47if9gkb49dqx6c0sx8s2"; depends=[ade4 segmented]; }; + seqminer = derive2 { name="seqminer"; version="5.9"; sha256="0sfkxrc9gy5a8fadzyzfzh7l5grasm8cj6cd2nnpv85ws6mqr6qd"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.1"; sha256="0p7vbrx0l59wyxhg59a8nnnk1z46inys30rpchj0v5ggadaazjkx"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; }; - sequoia = derive2 { name="sequoia"; version="0.7.2"; sha256="0qvy9bmaai85gnhhrw1r59vzxll1r8r0h51cn88d6n7801yi9r3r"; depends=[plyr]; }; + sequoia = derive2 { name="sequoia"; version="0.8.1"; sha256="0raznn4h0k50idvxfx74fb4df5357kgwwb9794ys6bm3lfi0jpjl"; depends=[plyr]; }; serial = derive2 { name="serial"; version="1.2"; sha256="1zjzm5ym8z9g97sff6bg9p5dhjpj6g26wam9j9gklffiry8dd9li"; depends=[]; }; seriation = derive2 { name="seriation"; version="1.2-1"; sha256="1h3zl3imrymz4kdzccnplc6w6b793csgq5r9cfjc37gbmjg3jf1j"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; }; seroincidence = derive2 { name="seroincidence"; version="1.0.5"; sha256="07lphrp7r3i87633q8g6svk2mxbsvq4blrf8gnm0p99hkmz8wgg9"; depends=[]; }; @@ -8981,11 +9210,11 @@ in with self; { sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; }; session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; - sets = derive2 { name="sets"; version="1.0-16"; sha256="0pl0wnlgzyc2d87nkx90ficcww6lixmghhymhwi130vjjd0bqdjx"; depends=[]; }; + sets = derive2 { name="sets"; version="1.0-17"; sha256="1ib7wyzrdadxz7d29prr0k0dpx8yqgj9b1rnjn6lankjdlw7m08p"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="0.3-4"; sha256="0d5n8aw0d2ak96q4vlwmvk1g5m0acaqyr83l203wd470w4ksihqg"; depends=[DBI Rcpp units]; }; + sf = derive2 { name="sf"; version="0.4-1"; sha256="0qsyg7yhrhdfdcgh2z89xb2v0b1wvs7jh530bs8b2vjsaql5fkay"; depends=[DBI magrittr Rcpp units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfinx = derive2 { name="sfinx"; version="1.7.9"; sha256="0gnli24mi9zh5j9ycpraksf4z7crr27sv6j3ycww7jfq5lfhg8kp"; depends=[]; }; @@ -8996,14 +9225,14 @@ in with self; { sgd = derive2 { name="sgd"; version="1.1"; sha256="1kqpaxyacaq1fkmy4hsj62167gcmqng4pmafpdjdpqxwdqxz9xxf"; depends=[BH bigmemory ggplot2 MASS Rcpp RcppArmadillo]; }; sgee = derive2 { name="sgee"; version="0.2-0"; sha256="1dpbkab3wzcqp9rgy9gxibjs2dcpb5ql1dlgg97rxjr1fkigwxgk"; depends=[copula mvtnorm]; }; sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; - sglOptim = derive2 { name="sglOptim"; version="1.3.5"; sha256="1ys4hlpfsyc0iwhr1gpwzf47snpmmyxv0clb2vbcfm0lr272h25l"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; + sglOptim = derive2 { name="sglOptim"; version="1.3.6"; sha256="0gzhzfi5q9hgqgzagfdzi4cswpmwic9ggf72qi6axl1hixgmgp0w"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.2"; sha256="1yk9wvg98a2l9kdaksy75av9z9iz27v5d2zpsqhabqwkwfh6wkad"; depends=[igraph Matrix]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; }; sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="0.2.0"; sha256="1r2xbz1h144pg53g3ayy7n08091gv5zj52p02gv7kihir2kzxj0w"; depends=[]; }; - shadow = derive2 { name="shadow"; version="0.2.0"; sha256="1p2g0anxl6ynvq97jy7qwy9p9pjmfpii7irh6arhvybz28v4ky00"; depends=[raster rgeos sp]; }; + shadow = derive2 { name="shadow"; version="0.3.0"; sha256="0zvdyfa0i167kpwlwcm0dkjc9c01wiygvi75sx2ai4g2v8yqw7hj"; depends=[raster rgeos sp]; }; shape = derive2 { name="shape"; version="1.4.2"; sha256="0yk3cmsa57svcvbnm21pyr0s0qbhnllka8nmsg4yb41frjlqph66"; depends=[]; }; shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; }; shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; }; @@ -9011,20 +9240,25 @@ in with self; { sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; - shazam = derive2 { name="shazam"; version="0.1.4"; sha256="0gb6nahnkhhymq0bkxgb165rr1saqri43khgqx2xgm37s0wxqfc9"; depends=[alakazam ape data_table doParallel dplyr foreach ggplot2 igraph iterators lazyeval scales SDMTools seqinr stringi tidyr]; }; - shiny = derive2 { name="shiny"; version="1.0.0"; sha256="152v2z1cyg6893b0qd5rs12a2m9dbzk7ak04qvbcym0s9y4l0kf4"; depends=[digest htmltools httpuv jsonlite mime R6 sourcetools xtable]; }; + shazam = derive2 { name="shazam"; version="0.1.5"; sha256="14srkwmghpiy85wnwb50g11i5z90kxm1gv2v1rgl7c9xpwrgg68v"; depends=[alakazam ape data_table doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval scales SDMTools seqinr stringi tidyr]; }; + shiny = derive2 { name="shiny"; version="1.0.2"; sha256="150ffkr7vjigxkkzqjn9gij9w5p44446kwm9992bwyqxsaxim5x4"; depends=[digest htmltools httpuv jsonlite mime R6 sourcetools xtable]; }; shinyAce = derive2 { name="shinyAce"; version="0.2.1"; sha256="0ycka8rsw0178q9klfid97vdn5cbyx3r778nis5s3dqipdyazdm9"; depends=[shiny]; }; shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; }; - shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.2"; sha256="0zqfay21nn2mrjk33g60rqb5mdac15rl53kkny7ypblmiky0mlzz"; depends=[digest shiny]; }; + shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.3"; sha256="1ikxwa02jpkir1xxx4lvz995ggx8032vl0zknmhccb2mn1k98b4i"; depends=[digest shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.6.2"; sha256="1lphzqbzg482lv0xiamfv28n5nyjppss9zzcpx1cd5fsz0xg1282"; depends=[htmltools RJSONIO shiny]; }; + shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.1.0"; sha256="1vl80vp7yslnh0dvcrpysfn5rndjavphy31y15546q7ax7d0fn6v"; depends=[dplyr DT heatmaply htmltools htmlwidgets jsonlite plotly RColorBrewer readxl shiny viridis xtable]; }; shinyLP = derive2 { name="shinyLP"; version="1.1.0"; sha256="08vc35988pv0kx0kvdl26nkdzcgmi6w4xffmyylan7x59519imkk"; depends=[shiny shinyBS shinythemes]; }; shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; }; + shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.2.0"; sha256="1qsrmc89k12d09zx41fnb08y3gzsyhb1kspb7h10hcv9gk1f3m2c"; depends=[htmltools jsonlite shiny]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.5.3"; sha256="0anw22qxbis69zm0ls6alsc3ann27hvgs5mv1wvr4ppk7q8cg4l2"; depends=[htmltools shiny]; }; + shinyjqui = derive2 { name="shinyjqui"; version="0.1.0"; sha256="0jx0wbgw981pr60fpsd0jrhg0kj3zjp1cg1wp6201kq40mar70zg"; depends=[htmlwidgets jsonlite shiny]; }; shinyjs = derive2 { name="shinyjs"; version="0.9"; sha256="1hh9djpcq80srxxy6ysy3pnwiyc5mx1xmhvs0jacbr3cszq1m6kk"; depends=[digest htmltools jsonlite miniUI shiny]; }; + shinymaterial = derive2 { name="shinymaterial"; version="0.1.0"; sha256="0vj0hnq05mrjsr0wmgacy3dl1nsgm768ygpi9wy78cszh1kf5knh"; depends=[shiny]; }; shinystan = derive2 { name="shinystan"; version="2.3.0"; sha256="1xianpv9s4xjv5lsnagcx7gsnba38psv9kgik9z6k7z9g7bg91rs"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; shinythemes = derive2 { name="shinythemes"; version="1.1.1"; sha256="0i220y051dq763idh1j5zhpb5cpv3jr11jd9akmry9aadyys5pz6"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; @@ -9038,18 +9272,19 @@ in with self; { shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; siRSM = derive2 { name="siRSM"; version="1.1"; sha256="0fx6bfb5c8hdlgjxddwhhzr09ls53kfgn36hjk9zi5z8m14a7wbn"; depends=[doSNOW foreach MASS rsm]; }; siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; + sicegar = derive2 { name="sicegar"; version="0.1"; sha256="15l1ffggqlaywqyk6wx745yrhfxkdljycz1l8vsp15i65w03xd0q"; depends=[dplyr fBasics ggplot2 minpack_lm]; }; sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; sidier = derive2 { name="sidier"; version="3.0.1"; sha256="1vl28biy7inycn74kzq0gm3r2fd5ylkndl863jy8b3jvdrq9achk"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sievetest = derive2 { name="sievetest"; version="1.2.2"; sha256="0mbgkf014m6bc7qg60vf065i6mvl5n4a0bvg8vb7dw531vsw2771"; depends=[]; }; sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigloc = derive2 { name="sigloc"; version="0.0.4"; sha256="13v2dlgsbcsqqm8yxls62i7r3sk8m3c78jv8f9lgdihq5pjnd9zp"; depends=[ellipse nleqslv]; }; - sigmoid = derive2 { name="sigmoid"; version="0.2.0"; sha256="0cp16spja60nv6wpj0zg5b4nkj1dg0d0blhrjm4ki5pz9k7lc0g7"; depends=[]; }; + sigmoid = derive2 { name="sigmoid"; version="0.2.1"; sha256="1myphx64irwllf3p9aifmg37mg4jg58ik7f42zilg5qsjfhj37zf"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.4"; sha256="1plyvx0pdid4zydxjwph6v96c8ilzgn55vcdszkslp3a4s2sns65"; depends=[Rcpp seqinr shiny]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; }; - sigr = derive2 { name="sigr"; version="0.1.4"; sha256="0lw7l0dsjv0c4fdl8x0prg91qhbi4lvqfaky38j75w9jw8h9gkq4"; depends=[]; }; + sigr = derive2 { name="sigr"; version="0.1.5"; sha256="07684isbpqnlpi0dqrcl0a6idqxakqiwyyarhdqcks8yp67y4aqi"; depends=[]; }; simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; }; simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; }; simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; @@ -9059,19 +9294,19 @@ in with self; { simSummary = derive2 { name="simSummary"; version="0.1.0"; sha256="1ay2aq6ajf1rf6d0ag3qghxpwj0f8b3fhpr2k0imzmpbyag1i3gj"; depends=[abind gdata svUnit]; }; simTool = derive2 { name="simTool"; version="1.0.3"; sha256="1x018p5mssrhz2ghs3ly9wss12503h93gl7zk0mqh1bcrzximh0k"; depends=[plyr reshape]; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; }; - simboot = derive2 { name="simboot"; version="0.2-5"; sha256="0slznwk8i3z76sxbfd4y5rp28jr6jv4i5ynnckpr10i59ba04wlq"; depends=[boot mvtnorm]; }; + simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; }; simcausal = derive2 { name="simcausal"; version="0.5.3"; sha256="1k0cbnkgd8sn5vjvmpa496yir868xldhcnkynfqdcs4qsfywfrzs"; depends=[assertthat data_table igraph Matrix R6 stringr]; }; - simctest = derive2 { name="simctest"; version="2.4.1"; sha256="0v4l3dqhr551kr1kivsndk4ynkiaarp8hp65vgng4q8jm60il98c"; depends=[]; }; + simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-7"; sha256="0p6kmv65k3zy5q4v8casc2cp3c2ckblmycd1y1nnn7z7fnd57g8h"; depends=[deSolve minqa]; }; simest = derive2 { name="simest"; version="0.3"; sha256="1bxgrr0sncsi1swmj5l4kqyd2v80py50d5xynv6544r1qnfpwk69"; depends=[nnls]; }; simex = derive2 { name="simex"; version="1.5"; sha256="01706vbmfgcg13w1kq8v5rnk5xggbd1n7fv50c6bvhdyc1dly313"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; }; - simmer = derive2 { name="simmer"; version="3.6.0"; sha256="1i7ppj7rf21i5frycmcd9pn51rc702pp3hmyv03cf9rm454v6rc2"; depends=[BH magrittr R6 Rcpp]; }; - simmer_plot = derive2 { name="simmer.plot"; version="0.1.8"; sha256="0r1r88bq4m4qzqyzag3rr67b6cakf4446vdhxqiqc23ky16wl99l"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; + simmer = derive2 { name="simmer"; version="3.6.1"; sha256="0hcp7bnq7shxnnxvx6qkbnhhl7mlfficn3an3d9nnz721vvd3g5v"; depends=[BH magrittr R6 Rcpp]; }; + simmer_plot = derive2 { name="simmer.plot"; version="0.1.9"; sha256="0xgry3x94b8h5cg9p7a8f4xjrbs61wjk1pc8drlvjjs5dazq310f"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; }; simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; }; simone = derive2 { name="simone"; version="1.0-3"; sha256="1l38xbcf50kjh0k4dc4xsxkjr54jz4s98az99mzcsdarqd6kz9kg"; depends=[mixer]; }; simpleNeural = derive2 { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; }; - simpleRCache = derive2 { name="simpleRCache"; version="0.2.2"; sha256="1hbiwk2am56f2vhj5qvajkqwynlch7c857vnpj99497wgy2wxg7z"; depends=[digest]; }; + simpleRCache = derive2 { name="simpleRCache"; version="0.3.2"; sha256="0ldmxa5rw1kcb24swnk8s471ww11jfbscynaahnnsi0zzqmhwirk"; depends=[digest]; }; simpleSetup = derive2 { name="simpleSetup"; version="0.1.0"; sha256="0rbzmixk76b3lgi9m7ijhcl6dha7wbbxfgwdhnp2y338zny6c6rm"; depends=[]; }; simpleboot = derive2 { name="simpleboot"; version="1.1-3"; sha256="1qprjisfflhzg8ll12p3q1zcfdiyc45glic2j9cw9nhx5rb065fk"; depends=[boot]; }; simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; @@ -9084,6 +9319,7 @@ in with self; { simsem = derive2 { name="simsem"; version="0.5-13"; sha256="0v6gbfp4659gbpzc1vffg687c8bcd45ddb7jhd0bgx66m28853kk"; depends=[lavaan]; }; simstudy = derive2 { name="simstudy"; version="0.1.2"; sha256="08350rd4nd4vckd51n2k4q28p4wi3a366xr2kgrjxr7xpx12m6zw"; depends=[data_table mvnfast Rcpp]; }; simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; }; + simule = derive2 { name="simule"; version="1.0.0"; sha256="0b0h85swd9kwqw53ggfm6w3pqy4an6v0qvwzprnj7lfkqiksgzxl"; depends=[lpSolve pcaPP]; }; sinaplot = derive2 { name="sinaplot"; version="1.0.0"; sha256="1s87ykgad56f7l7janxx1x0y98dycpwk7mflyqxncq46awrd1ai0"; depends=[plyr]; }; siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; @@ -9094,16 +9330,16 @@ in with self; { sitar = derive2 { name="sitar"; version="1.0.9"; sha256="1yjiqykrx0dm0zkssagv50kyp4wj9b0sjmrpgbn9wzimqdb5ijph"; depends=[nlme quantreg]; }; sitmo = derive2 { name="sitmo"; version="1.0.0"; sha256="11az1zncpnalp1vkyxz75asqk6jd9wsn6kifjcqigm21kg8wcf7j"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-0"; sha256="00np025vj2ckyp9ikv89fm4mrxgqbgq29870dzq3i071ba7r650z"; depends=[data_table]; }; + sitree = derive2 { name="sitree"; version="0.1-1"; sha256="1g5q8kq4sk6akzyvaa6gbj9fddzwhw13s5qhh53gk99xn658zl8j"; depends=[data_table lattice latticeExtra]; }; sivipm = derive2 { name="sivipm"; version="1.1-3"; sha256="1l0j1bi38s09ax4kwikk615lyd074gzg1aa1j2jfmhr3igannm3z"; depends=[seqinr]; }; - sizeMat = derive2 { name="sizeMat"; version="0.2.0"; sha256="10ghh7ch33jjchirsbxmj36ig44zncwcmsy7is5vj4pbmhpbz6gv"; depends=[MASS matrixStats mcmc MCMCpack]; }; - sjPlot = derive2 { name="sjPlot"; version="2.3.0"; sha256="0gljrzlz4kcfam0i79qiapj858h9h7w6asrga6812w093f6k9ivi"; depends=[broom dplyr effects ggplot2 lme4 MASS merTools modelr nlme psych purrr scales sjmisc sjstats tibble tidyr]; }; + sizeMat = derive2 { name="sizeMat"; version="0.3.0"; sha256="0766wxcc1980ivlib2saagl20y9dm0ar7i43qcqk2jpdbbaky33z"; depends=[MASS matrixStats mcmc MCMCpack]; }; + sjPlot = derive2 { name="sjPlot"; version="2.3.1"; sha256="1alhwzqp748iffgbbbldgzgdcv1ilhx4jszqg6dlk94kw38jn4px"; depends=[broom dplyr effects ggplot2 knitr lme4 MASS merTools modelr nlme psych purrr scales sjmisc sjstats tibble tidyr]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; }; - sjmisc = derive2 { name="sjmisc"; version="2.3.0"; sha256="06h13sqh7k7dis5b02zqq41wsr0zrwxxkcaaam9jhmbb9k0nq8s1"; depends=[broom dplyr haven psych purrr stringdist stringr tibble tidyr]; }; - sjstats = derive2 { name="sjstats"; version="0.8.0"; sha256="0kg9g7g0d4cy75qfqa9iqs1wkbc7k4lm3sq6nmaq4x1nlc9hrl0r"; depends=[broom coin dplyr lme4 lmtest MASS Matrix modelr nlme purrr sandwich sjmisc tibble tidyr]; }; + sjmisc = derive2 { name="sjmisc"; version="2.4.0"; sha256="0s7w6l2na7rk2lyjz7f31m4qay8r5q39lwv8bs1288xw01n8rqk1"; depends=[broom dplyr haven magrittr psych purrr stringdist stringr tibble tidyr]; }; + sjstats = derive2 { name="sjstats"; version="0.10.0"; sha256="097g6ggr6ydphmyx5s0aqb2bin06l51pwl5sb2r5xk8hp996ia72"; depends=[broom coin dplyr lme4 lmtest MASS Matrix modelr nlme purrr sandwich sjmisc tibble tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skeleSim = derive2 { name="skeleSim"; version="0.9.5"; sha256="1m0jwr63v989dalchiv90sfpi6g19rj0x2zgp0bgmjpq3xyamykf"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; }; - skeletor = derive2 { name="skeletor"; version="1.0.2"; sha256="0xnlhlxdpj1lg7balpwsz5b4d90505al389b288ac81q0wg974rf"; depends=[]; }; + skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; @@ -9114,7 +9350,9 @@ in with self; { sld = derive2 { name="sld"; version="0.3.2"; sha256="0za5pw7ki419ni9pqqzddb10d16nvv5rh5jrkl4f77j0ps2ajylp"; depends=[lmom]; }; sleekts = derive2 { name="sleekts"; version="1.0.2"; sha256="0syk244xrsv8hz5sxm7wizk0kyn1nc6z4c63c8xn57fz130zj75k"; depends=[]; }; slfm = derive2 { name="slfm"; version="0.2.2"; sha256="01n9y6kyl7z1ynckp2hkrv2yl9jf30zcbbi3sx9jrcha557fg1cf"; depends=[coda lattice Rcpp RcppArmadillo]; }; + slickR = derive2 { name="slickR"; version="0.1.0"; sha256="0jk9h58v30cl64sfd5730ccv54bsw39d8d57085wrx1kqadsampy"; depends=[base64enc htmlwidgets xml2]; }; slim = derive2 { name="slim"; version="0.1.0"; sha256="1d39hcsb6qxi36x7fkl67vy7r8n7ij275z7jnrb2n3pjnqkzjmzi"; depends=[data_table MASS]; }; + slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; }; sm = derive2 { name="sm"; version="2.2-5.4"; sha256="0hnq5s2fv94gaj0nyqc1vjdjd64vsp9z23nqa8hxvjcaf996rwj9"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.2-5"; sha256="1mwahjgslk82f8bl6qcjs1yadhbnqrxxhvkffkgc2fv3s6lh5d9m"; depends=[]; }; @@ -9139,9 +9377,9 @@ in with self; { smfsb = derive2 { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; }; smint = derive2 { name="smint"; version="0.4.2"; sha256="0sfk8r4jzvfs63z1vka280hdmhcbcrspr9zxwc5az9hkj65g1n0f"; depends=[lattice Matrix]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; - smnet = derive2 { name="smnet"; version="2.1"; sha256="1jqcgm098kdsrgwrpjry0l6rg8ql7cigxk54svs3170x1fvxa3il"; depends=[DBI RSQLite spam SSN]; }; + smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; }; smoof = derive2 { name="smoof"; version="1.4"; sha256="18li9l62lmpsva0whw6d5wr46w90w3z70wywiy785sla00g06sp2"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo]; }; - smooth = derive2 { name="smooth"; version="1.7.0"; sha256="16jhg9qn6rcgd64wx6f7b9a3p9kgkbms8vlygc1gmnkifnh60a0v"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; + smooth = derive2 { name="smooth"; version="1.9.0"; sha256="0h9g78bi07x42lfkl1yh88f7sim79i2mmv2pibrfg8kq1fa78axd"; depends=[forecast nloptr Rcpp RcppArmadillo zoo]; }; smoothAPC = derive2 { name="smoothAPC"; version="0.1"; sha256="06lpjp408ggj27yw6mw7f96kxly7r8kzikbsdp0y1gzig1qq8nbs"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; }; smoothSurv = derive2 { name="smoothSurv"; version="1.6"; sha256="1s25gpih0nh8waw4r3iw53n3rc44mlzixkh4i2cykbg5rdrs8pnf"; depends=[survival]; }; @@ -9171,7 +9409,7 @@ in with self; { sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; }; sodavis = derive2 { name="sodavis"; version="0.1"; sha256="1cci7aq2yqxb97ah5nycmhvg3d47fsicdgmgnw4yz88y61b3ndll"; depends=[MASS nnet]; }; - sodium = derive2 { name="sodium"; version="0.4"; sha256="09xfla0227dx3354nm0pgkwa6322ifnxydxwmlc25s1vb7mjkk1s"; depends=[]; }; + sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; }; sofa = derive2 { name="sofa"; version="0.2.0"; sha256="0jjc3r25qprxrhwwzx4b70i51v8gygxwx3x9d1zydx9hw1plk0mb"; depends=[httr jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4"; sha256="07cxbzkl08q58m1455i139952rmryjlic4s2f2hscl5zxxmfdxcq"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; @@ -9195,7 +9433,7 @@ in with self; { someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="2.6"; sha256="02y0iah34h9zjji0p5xllz76q3cdabkljsi6vvbdraf0rhi2x51f"; depends=[MASS Matrix]; }; + sommer = derive2 { name="sommer"; version="2.7"; sha256="1cn173fja9w7rw169xwfv4dmfajka51d6vla72wjhyc454amqg0d"; depends=[MASS Matrix]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; }; @@ -9212,20 +9450,20 @@ in with self; { soundecology = derive2 { name="soundecology"; version="1.3.2"; sha256="1ig04hdxwailsp4lv5y9q73x7vb6hl4dw9zlb05gbccvid5vmdsh"; depends=[ineq oce pracma seewave tuneR vegan]; }; source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; }; sourceR = derive2 { name="sourceR"; version="1.0.0"; sha256="118v608cimphsm5p84f1j1i3s6yv0xa7qfqrd13j59pvzbfbplka"; depends=[cluster dplyr gplots gtools hashmap R6 SPIn uuid]; }; - sourcetools = derive2 { name="sourcetools"; version="0.1.5"; sha256="0jx6kslygfqaic3cmjwag3dy98q1a2dw20cz7z8agsknmmbk6dy2"; depends=[]; }; + sourcetools = derive2 { name="sourcetools"; version="0.1.6"; sha256="0l8c6fql82cb246qh7hfgxb4s35qn0qfgy6dzvkx0zkz1cpqvx69"; depends=[]; }; sp = derive2 { name="sp"; version="1.2-4"; sha256="0crba3j00mb2xv2yk60rpa57gn97xq4ql3a6p9cjzqjxzv2cknk2"; depends=[lattice]; }; sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; sp500SlidingWindow = derive2 { name="sp500SlidingWindow"; version="0.1.0"; sha256="0m4fg7vwscm1575zq7s8sycr742lbwwhcr7s4gm4vcawz9sfvhkl"; depends=[dplyr FinCal gdata lubridate magrittr]; }; spAddins = derive2 { name="spAddins"; version="0.1.7"; sha256="1ci246770j40zzmsjwjqwkwi6b2w5qwb0n4f4wah5rjf6zjwkd5r"; depends=[rstudioapi]; }; - spBayes = derive2 { name="spBayes"; version="0.3-9"; sha256="1zdyz5jqbixwj59q9f1x8f3knz0jwdfl0abj0w6cxrllkb38yg10"; depends=[abind coda Formula magic]; }; - spBayesSurv = derive2 { name="spBayesSurv"; version="1.0.6"; sha256="1k9d8saab2isj60z5kffb7i8f1ymp7327m15gpinw0wv1m9wn11p"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; + spBayes = derive2 { name="spBayes"; version="0.4-0"; sha256="1qnn2jpc22594zvqr99m3r8sl5cab1khbcrk8w6i2s91kbwc0qyh"; depends=[abind coda Formula magic]; }; + spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.0"; sha256="0zxs39b5s5pz1vdfjnsdp357qx0g0r42h7wqnsrpdfh88ry82s2l"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spMC = derive2 { name="spMC"; version="0.3.8"; sha256="1glkyv6wmh766ssdlm4z7dck32r0284kwah0ksmmkwxkfw1qx7xb"; depends=[]; }; spTDyn = derive2 { name="spTDyn"; version="1.0"; sha256="0yrnbf9g1n1hrrra2vp6412wfky1bhy3b6raif9k82xvi9p9m6pz"; depends=[coda sp]; }; spTest = derive2 { name="spTest"; version="0.2.4"; sha256="1pfyrim6m0pcwsxpin9z09569yzil49hsz5mndp723c9wkk8vn5h"; depends=[geoR sp]; }; spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="2.0-1"; sha256="15yrbxx44cqphhr71b5hiimwwjiwwpzny16xjb87nn2lc4mb53by"; depends=[coda sp]; }; spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; }; - spaMM = derive2 { name="spaMM"; version="1.10.0"; sha256="1lr2y1pcbwpggq5fkfnbz76q0iixy9vj23akj2s9a7d6hxs01ya3"; depends=[geometry lpSolveAPI MASS Matrix mvtnorm nlme nloptr proxy Rcpp RcppEigen]; }; + spaMM = derive2 { name="spaMM"; version="2.0.0"; sha256="0d453paflsbrwjpd6xh97k4fxc76ys0rrsv4kcwy2zxqxy7mzqgq"; depends=[MASS Matrix nlme nloptr proxy Rcpp RcppEigen]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; }; spaceExt = derive2 { name="spaceExt"; version="1.0"; sha256="0lp8qmb7vcgxqqpsi89zjy7kxpibg3x2mq205pjmsrbbh7saqzr4"; depends=[glasso limSolve]; }; @@ -9244,20 +9482,20 @@ in with self; { spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; }; sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; }; sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; }; - sparklyr = derive2 { name="sparklyr"; version="0.5.2"; sha256="0h09xjvq6sq7az5cxkac5840av2vgngp7b05gdrgc26d3x2qvpvm"; depends=[assertthat base64enc config DBI digest dplyr httr jsonlite lazyeval rappdirs readr rprojroot withr]; }; + sparklyr = derive2 { name="sparklyr"; version="0.5.3"; sha256="1gwp1x9lgwkv8kvbywj6hafkpw93b9hiw6hims69b5krfir6d9n7"; depends=[assertthat base64enc config DBI digest dplyr httr jsonlite lazyeval rappdirs readr rprojroot withr]; }; sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; }; sparr = derive2 { name="sparr"; version="0.3-8"; sha256="1vsfk769f6227wrxfpq3qbs9h8farfnmgq94pl2ra4hgvpvygsmr"; depends=[MASS rgl spatstat]; }; sparseBC = derive2 { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; }; sparseFLMM = derive2 { name="sparseFLMM"; version="0.1.0"; sha256="1wrpjhb20mrkg9a5302phy4hrn5qfndjl78dx1v4a811clgfid8q"; depends=[data_table MASS Matrix mgcv refund]; }; - sparseHessianFD = derive2 { name="sparseHessianFD"; version="0.3.2"; sha256="1zn0nrdlgynxhq48cx8zi8bk2ir6zvfg1pgxr6j479j88q8hcjb3"; depends=[Matrix Rcpp RcppEigen]; }; + sparseHessianFD = derive2 { name="sparseHessianFD"; version="0.3.3"; sha256="13v8zia1i0k6faiz6faikqmlrp16riwv637yygjq2cq8fcm75pyf"; depends=[Matrix Rcpp RcppEigen]; }; sparseLDA = derive2 { name="sparseLDA"; version="0.1-9"; sha256="1k3sw9kc40yxnfss4vrsx34qxmv8ssddyhbfjhxrdldvblhbwchb"; depends=[elasticnet MASS mda]; }; sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0"; sha256="11llmrkq0pnrdphgjvhmg269bq3xbbn4s7kd7xhvk62sigvspkcj"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.0"; sha256="12g387bvpy4249kwq946v006ab095zsmgfsrkc1yqncxhmjwrgqn"; depends=[Matrix]; }; sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-2"; sha256="1bv9ipfs275vr1hmz7g7w4rimvbkg15wjh3xj3cx1zam91k384k9"; depends=[]; }; - sparsebn = derive2 { name="sparsebn"; version="0.0.2"; sha256="116m32rb1m7bbvkhiwb1270h7jirp3ysck6gij054igqprm4lq74"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; - sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.3"; sha256="1qgnqad6klhzg80hmk48bws0yabd3akw7vs2v3sfrwx4ckl3h4ii"; depends=[Matrix nnet]; }; + sparsebn = derive2 { name="sparsebn"; version="0.0.4"; sha256="0msd12gnxijkgazg4dyfqfravsacskbshp00fa4g2vkzmsjai1y0"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; + sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.4"; sha256="0473pxzb95ygvhwkvs97d0zmfwlmxnxn3xp125bycv3ns3rgpssy"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.3"; sha256="1sh6g1086l040547yajgyp4hq8yzlspdb6jmw4w1sv0zsmca25sv"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; }; sparsenet = derive2 { name="sparsenet"; version="1.2"; sha256="106a2q4syrcnmicrx92gnbsf2i5ml7pidwghrpl6926glj59j248"; depends=[glmnet shape]; }; sparsepp = derive2 { name="sparsepp"; version="0.1.1"; sha256="0wzj4z333ns18a1byii601fp46dlq9q4dbprkc95yl30xpzmdx0b"; depends=[]; }; @@ -9275,16 +9513,17 @@ in with self; { spatial_tools = derive2 { name="spatial.tools"; version="1.4.8"; sha256="0qnsjfx974na87p3n7sp711sc13v6dmpvb2kjpvscixs8rsy03y1"; depends=[abind doParallel foreach iterators mmap raster rgdal]; }; spatialClust = derive2 { name="spatialClust"; version="1.1.1"; sha256="042yrmh1rb0hxynxlbdpcissgy9zazs5aqx7vj388ibynzijck3r"; depends=[ggplot2 maptools rgeos sp]; }; spatialCovariance = derive2 { name="spatialCovariance"; version="0.6-9"; sha256="1m86s9a059spp97y37dcirrgjshcqzpdj11cq92vji624w4nrhlb"; depends=[]; }; - spatialEco = derive2 { name="spatialEco"; version="0.1-5"; sha256="04d6dqmayfs19922s1pg1rsi5b4hdj50665qkp02p0wbbnnkhvs4"; depends=[cluster RANN raster RCurl rgeos rms SDMTools sp SpatialPack spatstat spdep yaImpute]; }; + spatialEco = derive2 { name="spatialEco"; version="0.1-7"; sha256="0l8nshsapbgfzli1rpls3j3s8gyqy2nzsgqf2x4v1r699r419i5k"; depends=[cluster MASS RANN raster RCurl rgdal rgeos rms SDMTools sp SpatialPack spatstat spdep yaImpute]; }; spatialTailDep = derive2 { name="spatialTailDep"; version="1.0.2"; sha256="107yldc43pgbadxdisnc7vq8vyvcps1b1isyvxd0kyf59xldiq47"; depends=[cubature mvtnorm SpatialExtremes]; }; spatialfil = derive2 { name="spatialfil"; version="0.15"; sha256="01fbn9zblz7rjsgqy3ikdqpf0p0idvb6m96mf7m7qi2ps5f48vzj"; depends=[abind fields]; }; spatialkernel = derive2 { name="spatialkernel"; version="0.4-19"; sha256="0gbl6lrbaxzv2f975k0vd6ghrljgf1kjazld3hm7781kv1f87lji"; depends=[]; }; spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; }; - spatialsegregation = derive2 { name="spatialsegregation"; version="2.43"; sha256="1jwjgpyy0dpghjwallqvi20bb84ljrn2qmdb35r5l243da511n8f"; depends=[spatstat]; }; - spatstat = derive2 { name="spatstat"; version="1.49-0"; sha256="0il36ljlql7xc00w8czydv529xjmi7c7fb30sr2k9mr7chln64bf"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="1.3-2"; sha256="0hky45v7hsg1anqvv5i0s6hndms18g5y9fbgy6r59yy7mybh6j4d"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="0.9-14"; sha256="1pd2dz7y64wi7bkw6nlnm6nyzkjk3pfxp2a3fmd3xrrp7fgsy7xk"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; + spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; }; + spatstat = derive2 { name="spatstat"; version="1.50-0"; sha256="0xlql98fplrh1rcn7y0nvbxsn84adqgdzidh3y89iyv6jcnzziwc"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_utils tensor]; }; + spatstat_local = derive2 { name="spatstat.local"; version="3.5-6"; sha256="0yb3k2szk2z61h2scyj4h78y13qvbd9b1hvwp9n2983w77y0k5dz"; depends=[spatstat spatstat_utils tensor]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="1.4-1"; sha256="0f03dnf3d1p0g8qi5c3siz0lk5jya6jjdh0q9im7mpvz3gij1p4l"; depends=[]; }; + spatsurv = derive2 { name="spatsurv"; version="1.1"; sha256="0fakhz2qc5vb7ym2ik7hilv8g5fn3z7s16hzngq1n591xza5b74g"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.4.5"; sha256="0qgng4w0jjm5rkq0arw4icv6xp9fhpv0b0kmy4wzh54qr3zhh2ja"; depends=[dplyr sp tibble]; }; spc = derive2 { name="spc"; version="0.5.3"; sha256="0y730vh04j4cyz5zfyx4xqfw07ic1l93197640q543adnmil40vf"; depends=[]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; @@ -9292,14 +9531,15 @@ in with self; { spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="0.6-11"; sha256="15pv5ygaj924fjscm7wffjxyz9krbdh6f70f2vawq2m1w7qs2kd8"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; + spdep = derive2 { name="spdep"; version="0.6-12"; sha256="15376wqwiy09300rj797xy8966ljdy1m1wl8jq9yklh20213cz9f"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.1.2"; sha256="056rdnz6qj24x8gl3aigcd84rk5c06r76wkcgn1rkaacs5b20qmq"; depends=[dplyr lazyeval sp spbabel tibble]; }; - spduration = derive2 { name="spduration"; version="0.15.1"; sha256="1kjr3vncns91ha1q3q1xp2ss12m80k5hixzccm1ggdc77ha3bjhv"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; + spduration = derive2 { name="spduration"; version="0.16.0"; sha256="1nyv6ffrky8cwwlfq0b4w17ibni6xq61zrc1s7s2hizlp41cnscd"; depends=[corpcor MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.3"; sha256="0qh0kkxs6hk344k3fys0g9yy0xl0kwnwl18bgiak53fd1k7whskq"; depends=[animation deSolve raster sp]; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; speaq = derive2 { name="speaq"; version="1.2.3"; sha256="01xihbj9qx24ql0kn1hafkgbsjl9hw16jh8vxqygmv0lvxljlzvy"; depends=[MassSpecWavelet]; }; speaq2 = derive2 { name="speaq2"; version="0.1.0"; sha256="0rrqh90vqi7l1nbwivzvygd292nnkgk26nyh2kw71pl3gfakmnml"; depends=[cluster data_table doSNOW foreach MassSpecWavelet mQTL]; }; + spec = derive2 { name="spec"; version="0.1.3"; sha256="0i1c5wjrca36zf5ak95i8n57hy1jj8w0qkkpnjqpn3xv3nvqccr2"; depends=[csv encode magrittr]; }; speccalt = derive2 { name="speccalt"; version="0.1.1"; sha256="0j7rbidmmx78vgwsqvqjbjjh92fnkf2sdx0q79xlpjl2dph7d6l6"; depends=[]; }; speciesgeocodeR = derive2 { name="speciesgeocodeR"; version="1.0-4"; sha256="033877l9sxcvvzpyf9aw19sj8qfscim663j2y2az8bl9c79xw4ph"; depends=[maps raster sp]; }; specificity = derive2 { name="specificity"; version="0.1.1"; sha256="1gvlyx9crkzm3yyp1ln5j9czcg83k7grm6ijabhl919gjjr1p60n"; depends=[car]; }; @@ -9312,37 +9552,39 @@ in with self; { speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; }; sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; }; - sperrorest = derive2 { name="sperrorest"; version="0.2-1"; sha256="17jq8r98pq3hsyiinxg30lddxwpwi696srsvm3lfxrzk11076j6v"; depends=[ROCR rpart]; }; + sperrorest = derive2 { name="sperrorest"; version="1.0.0"; sha256="0z5f8x9y9swnp13fph8jbd8cx0jr8d47wxr1gnnpgzj3s3kn115s"; depends=[doParallel foreach pbapply ROCR rpart]; }; spex = derive2 { name="spex"; version="0.1.0"; sha256="1d4dbj87ka7hrl4kmxll3al58i3k3ynxkmy25g95by6v8dfn7zb5"; depends=[raster sp]; }; spfrontier = derive2 { name="spfrontier"; version="0.2.3"; sha256="0br54kkva4m3yyqfjh3cs5wf4kk3ax6yg0h8cl5qiy38dvssa5qd"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; spgs = derive2 { name="spgs"; version="1.0"; sha256="1f75dvp6m5w5phg158ykvl4myvw6q4vysb2pc3bgm0f9fpcadfip"; depends=[]; }; - spgwr = derive2 { name="spgwr"; version="0.6-29"; sha256="05rw1ck2gf5c0aqpagcfijxghslppa6xdz7pnwanfclwq8ri1xqa"; depends=[sp]; }; + spgwr = derive2 { name="spgwr"; version="0.6-30"; sha256="0kxk3layivphwg262n6xxkiwz3rcydr7r3xsj9drmml40qgwgyis"; depends=[sp]; }; sphereplot = derive2 { name="sphereplot"; version="1.5"; sha256="1i1p20h95cgw5wqp9bwfs9nygm4dxzsggz08ncjs1xrsvhhq9air"; depends=[rgl]; }; sphet = derive2 { name="sphet"; version="1.6"; sha256="0149wkak7lp2hj69d83rn05fzh9bsvyc1kyg0d3b69sx92kqlwr0"; depends=[Matrix nlme sp spdep]; }; spi = derive2 { name="spi"; version="1.1"; sha256="0gc504f7sji5x0kmsidnwfm7l5g4b1asl3jkn2jzsf2nvjnplx1z"; depends=[]; }; - spider = derive2 { name="spider"; version="1.3-0"; sha256="1p6f8mlm055xq3qwa4bqn9kvq60p8fn2w0cc6qcr22cblm5ww7jp"; depends=[ape pegas]; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; }; spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-11"; sha256="1f16jvdj6kbiiypnbbj10nj7l88kkrxasrribqpjv7ai62dlximn"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; + spind = derive2 { name="spind"; version="2.0.1"; sha256="18zxmaq1ssg48fgpmpzz1rfp7gvjqavgm9nfg2rqngm0qhqx0m0r"; depends=[gee geepack lattice MASS rje sp splancs stringr waveslim]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; - splancs = derive2 { name="splancs"; version="2.01-39"; sha256="1lyzs7lbhw1pqmb4mr46ncm39wwrmin7qgshsr384j4023qwfqwd"; depends=[sp]; }; + splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; }; splines2 = derive2 { name="splines2"; version="0.2.5"; sha256="048c43dhrri0xc02897jxgqw7c5ai2nyylhx3bvwsqg0hrj3c7rv"; depends=[]; }; splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; }; + splithalf = derive2 { name="splithalf"; version="0.1.0"; sha256="037fxw65sbmclzkkh9a2gb5w5h9nmhijpg92r1dv5pw5pf7vm0qb"; depends=[plyr]; }; splitstackshape = derive2 { name="splitstackshape"; version="1.4.2"; sha256="0m9karfh0pcy0jj3dzq87vybxv9gmcrq5m2k7byxpki95apbrsmg"; depends=[data_table]; }; splm = derive2 { name="splm"; version="1.4-6"; sha256="1vclsx622zq7kdgb84dd74i6a1b27d0jnx29blzba77d24adyzmh"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; }; spls = derive2 { name="spls"; version="2.2-1"; sha256="0zgk9qd825zqgikpkg13jm8hi6ncg48qw5f985bi145nwy9j19xs"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; }; splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-137"; sha256="0bpzv6a05hnqnnz2znnkb3f34r56krhc595zjnn82azxj4a53njh"; depends=[]; }; splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-74"; sha256="0aikw6ckc0a7lrgjlcdmqspgrx0fc4iysd7jynd2lsf1hxy4pz35"; depends=[splusTimeDate]; }; - spm12r = derive2 { name="spm12r"; version="2.0"; sha256="1bwc9mygsamlzp4f6a1ahycvwxpwap1bi55rm5y6p5hhr331gckf"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; + spm12r = derive2 { name="spm12r"; version="2.3.1"; sha256="1fkm961phkxy5rmv2vav0a7vy9j89i0gwgfi2rjg682xl473j3gk"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; + spmoran = derive2 { name="spmoran"; version="0.1.0"; sha256="0jwnsjf165213212bg4n17jmp20jvzgrfdz0smrk0zvxhisas35g"; depends=[fields Matrix vegan]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spocc = derive2 { name="spocc"; version="0.6.0"; sha256="0xrwwac2d8j4c4qy6br9l6i9bqlqbmzmq34dp25xwhw1nla6mhvs"; depends=[data_table httr jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble V8 whisker]; }; spongecake = derive2 { name="spongecake"; version="0.1.1"; sha256="1bf2106ik4dp9xl68s8wzj5w6yl3syx8i39zxpp24rywb6f2i8n0"; depends=[ggplot2 jpeg magrittr plyr]; }; sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; }; - sppmix = derive2 { name="sppmix"; version="1.0.0.0"; sha256="0g0c461ab7mshhbxd5qbskk1rxzlq1rl2cgg0xfq00hv6x9nhb8y"; depends=[fields ggplot2 matrixcalc mvtnorm Rcpp RcppArmadillo rgl sp spatstat USAboundaries]; }; + sppmix = derive2 { name="sppmix"; version="1.0.1"; sha256="0l9hmjrb0yl4c6y9l39h6kggxda9qz6xspf719hjc30zq76h4k1a"; depends=[fields ggplot2 matrixcalc mvtnorm Rcpp RcppArmadillo rgl sp spatstat USAboundaries]; }; spray = derive2 { name="spray"; version="1.0"; sha256="12iv1sksxmac2ykrb8psfnaa9lzq6djv0a7a1x73jr3nflvrx9bh"; depends=[magic partitions Rcpp]; }; sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; }; sprint = derive2 { name="sprint"; version="1.0.7"; sha256="1yzx1qjpxx9yc0hbm1mmha5b7aq13iflq66af597b7yj6abm7zjp"; depends=[boot e1071 ff randomForest rlecuyer]; }; @@ -9357,6 +9599,7 @@ in with self; { spt = derive2 { name="spt"; version="1.13-8-8"; sha256="18s74pxfmsjaj92z2a34nq90caf61s84c616yv33a0xvfvp32qr5"; depends=[]; }; sptm = derive2 { name="sptm"; version="16.7-9"; sha256="0x8824zccrwdl38jbhq8skzcvxb7a3b1zggkd7gmyjd94xvxll9k"; depends=[kyotil survey survival]; }; spuRs = derive2 { name="spuRs"; version="2.0.0"; sha256="0lbc3nny6idijdaxrxfkfrn40bxfyp9z3yl9mwb1k6cyd10v5mfj"; depends=[lattice MASS]; }; + spup = derive2 { name="spup"; version="0.1-0"; sha256="1dfdxh45db91rmdws4pq1kbsbcjczz98fbfcmm4vlr0vbvisy9bj"; depends=[gstat magrittr mvtnorm purrr raster whisker]; }; sqldf = derive2 { name="sqldf"; version="0.4-10"; sha256="0n8yvrg3gjgbc3vzq0vlf7fwhgm28kwf0jv25qy44x21n6fg11h7"; depends=[chron DBI gsubfn proto RSQLite]; }; sqliter = derive2 { name="sqliter"; version="0.1.0"; sha256="17jjljq60szz0m8p2wc5l56659aap7an5gknc848dp89ycjgj3zx"; depends=[DBI functional RSQLite stringr]; }; sqlscore = derive2 { name="sqlscore"; version="0.1.1"; sha256="140g2kgfqcw6x3lq7bs90kvdx9kj81fr86hpcbg6dn3i8xslwrad"; depends=[dplyr]; }; @@ -9366,7 +9609,7 @@ in with self; { sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; }; srd = derive2 { name="srd"; version="1.0"; sha256="04j2gj7fn7p2rm34haayswrfhn6w5lln439d07m9g4c020kqqsr3"; depends=[animation colorspace plyr stringr survival]; }; srvyr = derive2 { name="srvyr"; version="0.2.0"; sha256="0znhwp6111p4icrpgn22k48qlicxgripz3wslhmmkwydq00ndz9w"; depends=[dplyr lazyeval magrittr survey tibble]; }; - ss3sim = derive2 { name="ss3sim"; version="0.9.3"; sha256="0l2xd0d4hgz0b42fz7zf5dgd71fm5dsvhys4hg8c7j2nzzzx9hdk"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; + ss3sim = derive2 { name="ss3sim"; version="0.9.5"; sha256="0rdb49bfxvyh0jrqycrv1hxvh7y4kvw81jccjg5ma734x44q0vm5"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; }; ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; }; ssanv = derive2 { name="ssanv"; version="1.1"; sha256="17a4a5azxm5h2vxia16frcwdyd36phpfm7fi40q6mnnrwbpkzsjd"; depends=[]; }; ssc = derive2 { name="ssc"; version="1.0"; sha256="1hhlpcm1mdwkcxrprk5nc2yi3l69lz13av50y3cyz5vj73jhsg44"; depends=[proxy]; }; @@ -9377,12 +9620,13 @@ in with self; { ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.9"; sha256="1916r0hmhpfa0p1s8myqk8g4i8fgjqkm4wvpb4nf3sl69kfdva95"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; }; + sskm = derive2 { name="sskm"; version="1.0.0"; sha256="1qji34v66qj4k9axy5i2lf3j5zps8sjhwk3h3mqfln3pi9z6gmv8"; depends=[fpc sparcl]; }; ssmn = derive2 { name="ssmn"; version="1.1"; sha256="1rab9yjb05g5rphqlhwvdwmsyqlv1f4m0rqxfv8c5pbh170nbwbc"; depends=[mnormt moments sn truncdist]; }; ssmrob = derive2 { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; }; ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; sspse = derive2 { name="sspse"; version="0.5-1"; sha256="0gih9d0g4kp08c4v01p699lavb491khyj16i8vldhcb194bvs8m5"; depends=[coda]; }; - sss = derive2 { name="sss"; version="0.0-14"; sha256="19xq1pj4lrlh68fi2vy8cjg9xhmykwibm9rcg9snfc1qc6kp062x"; depends=[XML]; }; + sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; }; ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; }; @@ -9390,19 +9634,20 @@ in with self; { staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; }; stable = derive2 { name="stable"; version="1.1.2"; sha256="11irpn0qfblzskdr71991jlmdrbqqqpszppn5pii3lr5hflqqr1d"; depends=[rmutil]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; - stablespec = derive2 { name="stablespec"; version="0.2.3"; sha256="1amscsnsgv1jz1h2arvc5k6lrvzasb58m65lid0qw6k8pvxr9155"; depends=[ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; + stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; }; stabs = derive2 { name="stabs"; version="0.6-2"; sha256="0alzdj3lciggi9g3fj2lgdjb60dz6077nn4nb4wwd5nv7walp4sl"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; }; stacomirtools = derive2 { name="stacomirtools"; version="0.5.0"; sha256="1jq392dcv72r78iv4nd4scidn83l9wglgdzjcj8afr9d0ybdz3gk"; depends=[RODBC xtable]; }; stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stampr = derive2 { name="stampr"; version="0.1"; sha256="1w7zp5n41gzahv4psdgw5a5mylcxlf12931fnjz0q2cwqj9cwql5"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; + standardize = derive2 { name="standardize"; version="0.1.1"; sha256="18wc64fr55rb27a0h3pgqqfs360532s6gb0zgmd3wybfg5kjh5zx"; depends=[lme4 MASS stringr]; }; stargazer = derive2 { name="stargazer"; version="5.2"; sha256="0nikfkzjr44piv8hng5ak4f8d7q78f2znw2df0gy223kis8q2hsd"; depends=[]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; }; startup = derive2 { name="startup"; version="0.5.0"; sha256="1zhnvg47r4dgm85lvzgcacn2vlfz4pk4r1b263x9mg2ccjwpn8ld"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.3"; sha256="0i7j412xhyq6pk0gb5pp53sa455fwzpjyfd331j2d5qwk8dhrbh3"; depends=[]; }; - statar = derive2 { name="statar"; version="0.6.2"; sha256="1p1a17mc6zy5yffybf5q156yyr52mq0z4vmqss05hq3hlaygbbxz"; depends=[data_table dplyr ggplot2 lazyeval matrixStats stringr tidyr]; }; + statar = derive2 { name="statar"; version="0.6.4"; sha256="16jahn6skj4d1c8yg4m9iwifgl5i4bmqq7d2k9vcfnj21ih6fcvr"; depends=[data_table dplyr ggplot2 lazyeval matrixStats stringr tidyr]; }; statcheck = derive2 { name="statcheck"; version="1.2.2"; sha256="0bcv8klp75q8hlmwhax9lxx9i0kbhsz8442acbhxh5fn2pn2x9jm"; depends=[ggplot2 plyr]; }; statcomp = derive2 { name="statcomp"; version="0.0.1.1000"; sha256="0ac4s8a955ka0rs2a3k93aq2cxzrc48ai0sl9kn4yaqcw1arv2ap"; depends=[zoo]; }; statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; }; @@ -9415,9 +9660,10 @@ in with self; { statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statprograms = derive2 { name="statprograms"; version="0.1.0"; sha256="1jm8vnzccx34rhypkc5brx52k0f0g4z9cckzib43i5fcqd4skib6"; depends=[]; }; statquotes = derive2 { name="statquotes"; version="0.2"; sha256="05qsffbgpgzrhk2nbyfa4a63ad06aj09bzcc11h9dl3sdz6jj7gr"; depends=[stringr tidytext wordcloud]; }; + statsgrokse = derive2 { name="statsgrokse"; version="0.1.4"; sha256="1kxkpddmgyyg51fhmllgahnhwixwv6b95nx0viyqa9c5ngix2gd5"; depends=[httr jsonlite stringr]; }; stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; stdReg = derive2 { name="stdReg"; version="2.1"; sha256="0h9h64vk52l7ai50f4pih0qdshsqsx5cm3fj1fjrcpbsfq7azg34"; depends=[data_table survival]; }; - stddiff = derive2 { name="stddiff"; version="1.0"; sha256="0jzl7khnmx0809x9b9nf1n7dj7yknfcblgsf7cpslvglrdzppp42"; depends=[]; }; + stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; @@ -9428,14 +9674,15 @@ in with self; { stepp = derive2 { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; }; stepwise = derive2 { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; }; stheoreme = derive2 { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq8yybr2jwgk3w7s2msgjhlp1vazy8959s65"; depends=[]; }; - sticky = derive2 { name="sticky"; version="0.4.0"; sha256="0ba7pjvavhm1jp5rk6szvi5d6fmy6z7n9z3qs2kxcraww8aa1gg8"; depends=[]; }; + sticky = derive2 { name="sticky"; version="0.5.2"; sha256="0yib9llvlxyzcwam3qd3wxz91mdacvh4v888ifxwjhhjihffqvbj"; depends=[]; }; stilt = derive2 { name="stilt"; version="1.0.1"; sha256="1vrbbic0vqzgy574kzcr38iqyhax4wa6zl6w74n65z15map2fyma"; depends=[fields]; }; stima = derive2 { name="stima"; version="1.1"; sha256="1i8l7pfnqxx660h3r2jf6a9bj5ikg9hw7v8apwk98ms8l7q77p5l"; depends=[rpart]; }; stinepack = derive2 { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; - stm = derive2 { name="stm"; version="1.1.3"; sha256="09r95d6xw2b4q063x1j2a6wc9kyzphqc2dhfmlc9crir8fah9ayr"; depends=[glmnet lda Matrix matrixStats Rcpp RcppArmadillo slam stringr]; }; + stm = derive2 { name="stm"; version="1.2.2"; sha256="1kv4plz9i446s8vdrh71lk49gvvl6v5dviym4qh63iwkipgz2fy1"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmBrowser = derive2 { name="stmBrowser"; version="1.0"; sha256="0jfh0c835a2sxn2cqlmwdlzj2g2dmkfl2z3pkv4fc1ajggw2n7g2"; depends=[httr jsonlite rjson stm]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; + stmgp = derive2 { name="stmgp"; version="1.0"; sha256="1v6ahg4icyrz8p0lfiyi2x90allhjvcq8rycinas5mffg7xgpv7d"; depends=[MASS]; }; stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; }; stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; }; stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; }; @@ -9447,14 +9694,14 @@ in with self; { storr = derive2 { name="storr"; version="1.0.1"; sha256="1yc4z151dnbhcim7gvkylss239wcc7xlpjrfdc6qv8mf2gq1bv30"; depends=[digest R6]; }; stosim = derive2 { name="stosim"; version="0.0.12"; sha256="0c4sj5iirm542hx782izfdmy2m3kl5q28l10xjj0ib4xn5y6yx3c"; depends=[Rcpp tcltk2]; }; stplanr = derive2 { name="stplanr"; version="0.1.7-3"; sha256="07ap68vfksdyh29hqqhdq5mx17sppp6yqcx94swaryd51mc7rl72"; depends=[doParallel dplyr foreach geosphere httr igraph jsonlite lubridate maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos RgoogleMaps sp stringi stringr]; }; - stpm = derive2 { name="stpm"; version="1.6.0"; sha256="1jfx9nkw66dhwrphqx9rpml53plzd5a831qmxz0012fkji9m0423"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + stpm = derive2 { name="stpm"; version="1.6.6"; sha256="0vzl405hc5y97n9ixy20js50q5a6s7laaj1w9avn5dl2rgwk6xva"; depends=[mice nloptr Rcpp RcppArmadillo sas7bdat survival]; }; stpp = derive2 { name="stpp"; version="1.0-5"; sha256="1444dbwm0nyb5k8xjfrm25x984a7h9ln2vddrwjszfpmscv0iwm1"; depends=[KernSmooth spatstat splancs]; }; stppResid = derive2 { name="stppResid"; version="1.1"; sha256="0hgzsyy5y0sqd4d2agdr7p2kq0w51vs8f63dvj6j49h8cvgiws2x"; depends=[cubature deldir splancs]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; - strataG = derive2 { name="strataG"; version="1.0.5"; sha256="1q3b06hkkwdbh3zvd1lbsklwl8jm743bf17fnvdr8npxgpgqci15"; depends=[adegenet ape apex copula ggplot2 Hmisc pegas phangorn RColorBrewer Rcpp reshape2 swfscMisc]; }; + strataG = derive2 { name="strataG"; version="2.0.2"; sha256="1rf1xf07yb0dzasgig9sfm4i9ggdkjgy5iiysqgdapk3sxs26c8r"; depends=[adegenet ape apex copula data_table DT ggplot2 gridExtra Hmisc pegas phangorn RColorBrewer Rcpp shiny shinyFiles survival swfscMisc]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; - stratification = derive2 { name="stratification"; version="2.2-5"; sha256="0cgr49gvh12s6rr43878jxjkir7b7absqgbfsvj1bjlf2r3gyqy9"; depends=[]; }; + stratification = derive2 { name="stratification"; version="2.2-6"; sha256="1jlks3g8wpqlpci6v0ryyv93agiabdiklmk6ij0pc5icrfiynbhw"; depends=[]; }; stratigraph = derive2 { name="stratigraph"; version="0.66"; sha256="1idn5rwar9pxp1vsra68wrlhagmc92y5rs7vn4h63p35p357qdwz"; depends=[]; }; straweib = derive2 { name="straweib"; version="1.0"; sha256="0bh2f4n4i7fiki52sa57v96757qw1gn1lcn7vgxmc5hk5rzp2mi8"; depends=[]; }; stream = derive2 { name="stream"; version="1.2-4"; sha256="1xk9lnvf9xld74z4sxbwpgxl7cbni88cjyxqzxr0r9pn9vcpwima"; depends=[animation clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; @@ -9466,16 +9713,16 @@ in with self; { stringdist = derive2 { name="stringdist"; version="0.9.4.4"; sha256="1qngrhin1kqkjkfla7hp7ch0sfzi4nhaxgyzskmy51sz4llq5n4p"; depends=[]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.1"; sha256="16kkmb933v8pzc4gwz4x2nm51sj82slwpxmmn6p6p8dq5nfzmx5q"; depends=[stringr]; }; stringgaussnet = derive2 { name="stringgaussnet"; version="1.1"; sha256="161fi78cd7yddbcq71z3fgx1q2sacg1n1ggrkrqz17icwzviqrh5"; depends=[AnnotationDbi biomaRt GO_db httr igraph limma org_Hs_eg_db pspearman RCurl RJSONIO simone VennDiagram]; }; - stringi = derive2 { name="stringi"; version="1.1.2"; sha256="13i1p6j8mx31hsw2s4c2phm2llrrdakzixkm6i0axsxprri722z5"; depends=[]; }; + stringi = derive2 { name="stringi"; version="1.1.5"; sha256="1wh20is24lmzhcd9487ckv7r19009fyz4is3ianp3ky69vy8a7k5"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.2.0"; sha256="16hj2rmv8x03lp6cp2jk0k2plibvbggf444kp05przdvd03v7l31"; depends=[magrittr stringi]; }; strip = derive2 { name="strip"; version="0.1.1"; sha256="18pz6ix6d661fvg1k1yyyiiwa1gdixynmpxl725ffd9lpykmfqbw"; depends=[rlist]; }; stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; }; - striprtf = derive2 { name="striprtf"; version="0.2.2"; sha256="0y709fcdb12iwwhridbvg4xh0j9kgiz75237caax2wxf01fisahz"; depends=[magrittr Rcpp stringr]; }; + striprtf = derive2 { name="striprtf"; version="0.3.1"; sha256="12cj0zfnyvi6bs41lhfplfhl84xjs9x9441q6x136arbs68lrlgm"; depends=[magrittr Rcpp stringr]; }; strucchange = derive2 { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; }; structSSI = derive2 { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; }; structree = derive2 { name="structree"; version="1.1.3"; sha256="1apiqbmmvqmn0nv5cfflfqlyh0108fvy8sg9gg8z6d6bfqkd4rhb"; depends=[mgcv penalized]; }; strum = derive2 { name="strum"; version="0.6.2"; sha256="0f5cb7cfvqhmnv4sjfr58lns4fclmr8iyka595zddy9f6dv5rqp1"; depends=[graph MASS Matrix pedigree Rcpp RcppArmadillo Rgraphviz]; }; - strvalidator = derive2 { name="strvalidator"; version="1.8.0"; sha256="0c87256m6zx0m7qkkcdzfrb2x7gbl364499pj5xnfm274ib9l39x"; depends=[data_table ggplot2 gridExtra gtable gWidgets gWidgetsRGtk2 MASS plyr RGtk2 scales]; }; + strvalidator = derive2 { name="strvalidator"; version="1.9.0"; sha256="0srmld1xwvf2cki79c2mhwinal2yz6yar5k0b05a9adm70zb0swr"; depends=[data_table ggplot2 gridExtra gtable gWidgets gWidgetsRGtk2 MASS plyr RGtk2 scales]; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; }; stubthat = derive2 { name="stubthat"; version="1.1.0"; sha256="0x4sy808pq7nqnprqrcpss0v3r8sa1z8bbs759jmybqs1b0ihnqf"; depends=[testthat]; }; @@ -9485,7 +9732,7 @@ in with self; { subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; }; subgroup = derive2 { name="subgroup"; version="1.1"; sha256="1n3qw7vih1rngmp4fwjbs050ngby840frj28i8x7d7aa52ha2syf"; depends=[]; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; }; - subniche = derive2 { name="subniche"; version="0.9.2"; sha256="05grwm3g2l8sarybrybn6010769y76m4bp5df69r94p7v10wmd29"; depends=[ade4]; }; + subniche = derive2 { name="subniche"; version="0.9.4"; sha256="1pqw2sh20k4mw5ads2yfvdykc6hw7fwnl1mam6vq98jvvh4m5qmx"; depends=[ade4]; }; subplex = derive2 { name="subplex"; version="1.2-2"; sha256="10g1hv41w9g0pzj0k071zb3wglk7jl5p99v5maqpkr2v75mfkyry"; depends=[]; }; subprocess = derive2 { name="subprocess"; version="0.8.0"; sha256="0hvja2gacr84izlsvxcbw1xmm57ycx0n9k5yn62p1v40d135wk9p"; depends=[]; }; subrank = derive2 { name="subrank"; version="0.9.7"; sha256="0f1m4zk7s49f3kg8gz8g5af8r1x00m4zybdy5fmzvgnx9cx6crkc"; depends=[]; }; @@ -9496,9 +9743,11 @@ in with self; { subspaceMOA = derive2 { name="subspaceMOA"; version="0.5.2"; sha256="051zlpqpxxhhryzv03bb0dz8m7ijhwahagpcwngvh0ccdpi32m7h"; depends=[fields ggplot2 gridExtra magrittr rJava shiny stream streamMOA]; }; subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; - sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-9"; sha256="1m4ggvg1nyx3l96zfg826sarfmwxcbjwpipqk5q2qsnhd12wymbd"; depends=[]; }; + sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-10"; sha256="040ijdkjy95wd1w85g61jz7p9x2f0dm0lhcvkmy1jhmp28asb5pw"; depends=[]; }; + summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; }; summarytools = derive2 { name="summarytools"; version="0.6.5"; sha256="1ddvwn0rfyrlfar1kpwggxnpp9dpswdy8v5alcv3kanp540hnmb1"; depends=[Hmisc htmltools matrixStats pander pryr rapportools rstudioapi xtable]; }; - sunburstR = derive2 { name="sunburstR"; version="0.6.3"; sha256="0lirf37kb0vgsd3hijhx4pcmx1v59nw3ng53k0kyhgq24r3hzvxw"; depends=[d3r htmltools htmlwidgets]; }; + sunburstR = derive2 { name="sunburstR"; version="0.6.5"; sha256="0sq1x8rpqazgzn1c4gg13yimdmkc9nj9qr4b5z8anynr96hfjb45"; depends=[d3r htmltools htmlwidgets]; }; + supc = derive2 { name="supc"; version="0.1"; sha256="1cq0lr04m409xr3i1hphww4ldr8z3kqq2gmp7hm3yp0iz2gy3m9a"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; @@ -9508,7 +9757,7 @@ in with self; { superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; support_BWS = derive2 { name="support.BWS"; version="0.1-3"; sha256="1qlh2zgmr3b6gz3xmncjawgg08c6kgfg3d2m9x78iw95x7p3p5h8"; depends=[]; }; - support_BWS2 = derive2 { name="support.BWS2"; version="0.1-0"; sha256="0r5b7arcab2brcq3maizcy53vbbkzcs5n0zirjj3n1id5cdb36zl"; depends=[]; }; + support_BWS2 = derive2 { name="support.BWS2"; version="0.1-1"; sha256="1jay1ak8242vn9a0ippfdd48vdxqqz9j8frbgf5ncffdmzzn1n21"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; }; supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; }; @@ -9532,13 +9781,14 @@ in with self; { surveydata = derive2 { name="surveydata"; version="0.1-14"; sha256="1zcp3wb7yhsa59cl4bdw7p08vpviypvfa9hggwc60w7ashpky73i"; depends=[plyr stringr]; }; surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; }; surveyoutliers = derive2 { name="surveyoutliers"; version="0.1"; sha256="03nqw0zir3x57gg23hgsr2s99pv958kfsygqfwly96rvfdhr5p3v"; depends=[]; }; - surveyplanning = derive2 { name="surveyplanning"; version="2.6"; sha256="1nxxyny9bzb8p65vgrlfqq9x3r275d8vl99f6yg621hyzpbyz6gf"; depends=[data_table laeken]; }; - survival = derive2 { name="survival"; version="2.40-1"; sha256="10pf0kq0g66k5rgizrvh29mq3r84acljw2jgrv5yp6z38xw23mci"; depends=[Matrix]; }; + surveyplanning = derive2 { name="surveyplanning"; version="2.8"; sha256="0p4yigwypy2hl747qvm0qm0q7vp7p8af0yapqi7aadbbpwyy9z7h"; depends=[data_table laeken]; }; + survival = derive2 { name="survival"; version="2.41-3"; sha256="07cnr0hnki6ybbjll54l4s5lllhk19vni5f8m0mvsfp99ls7qygk"; depends=[Matrix]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.1.1"; sha256="0c4hr2q50snd5qm2drg4qzfkcz4klxr4jba6xpc8n2i8wn573cvc"; depends=[survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; - survminer = derive2 { name="survminer"; version="0.2.4"; sha256="083hja5zid3ndfpx77vxm7vyqnjrq8c18vil8mch721fafhajrcd"; depends=[ggplot2 ggpubr gridExtra magrittr maxstat scales survival tidyr]; }; + survminer = derive2 { name="survminer"; version="0.3.1"; sha256="03jg7lanharv32nj09xqf418aq23pwzwmm61qir0k3p5d3xxcmny"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat scales survival survMisc tidyr]; }; survrec = derive2 { name="survrec"; version="1.2-2"; sha256="0b77ncr1wg2xqqg1bv1bvb48kmd9h3ja2dysiggvprzjrj7hdlmx"; depends=[boot]; }; survsim = derive2 { name="survsim"; version="1.1.4"; sha256="16njbqlzmk34zrh485kc0a52yacdyj9z4z4a9zcq1z5psm87c58m"; depends=[eha statmod]; }; + survutils = derive2 { name="survutils"; version="1.0.0"; sha256="1dha1i2k9dyc9m9awqiq2ypy617zmw9yflfzv182z5fpd491ghrv"; depends=[broom dplyr ggplot2 lazyeval magrittr purrr survC1 survival]; }; svDialogs = derive2 { name="svDialogs"; version="0.9-57"; sha256="1qwnimzqz7jam3jnhpr90bgwp9zlsswy2jl17brdpsrpiwcg6jlr"; depends=[svGUI]; }; svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; svGUI = derive2 { name="svGUI"; version="0.9-55"; sha256="1fkkc12mhcbn3s2wzk0xdsp8jl2xmn48ys2an8jhxbww3gplk1rq"; depends=[]; }; @@ -9578,24 +9828,25 @@ in with self; { sybilSBML = derive2 { name="sybilSBML"; version="3.0.1"; sha256="1dzx1cdvi4fvdqf5hliwwk3gn5ig2wzzxv2gr92760p9c84hmmrj"; depends=[Matrix sybil]; }; sybilccFBA = derive2 { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; }; sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; }; + sylcount = derive2 { name="sylcount"; version="0.1-0"; sha256="1dxbqbjyvkg7cx234icby9fjdjz1z4l4crqd7kv8m05fv69pg224"; depends=[]; }; syllable = derive2 { name="syllable"; version="0.1.3"; sha256="1ymnczwx58h720hsm0s9zq3ddwg6gn6bgg0m8zw24i0nlivx0yjg"; depends=[data_table stringi textclean textshape]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.4-2"; sha256="1vn7r7b7yyn2kp8j3ghw50z49yzvwhm0izc6wgc7a99300xrr77s"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; }; symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; symmoments = derive2 { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[combinat cubature multipol mvtnorm]; }; synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; }; - synbreed = derive2 { name="synbreed"; version="0.11-41"; sha256="077ixxfipc7msrmg0p4v5nhqwn276bj2766h6y5m9gj208xz5d91"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS regress]; }; + synbreed = derive2 { name="synbreed"; version="0.12-4"; sha256="18mqa5iaybc0psc3cbk02sirfm3a7l9ph10yvj9w4z6ss76z004v"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS qtl regress]; }; synbreedData = derive2 { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; }; synchronicity = derive2 { name="synchronicity"; version="1.1.9.1"; sha256="0d9skpwmsnkn4xb3f2kgyyv8bhdi0r9p1kj3cvi0s92fjjnpi00c"; depends=[BH bigmemory_sri Rcpp]; }; synchrony = derive2 { name="synchrony"; version="0.2.3"; sha256="0fi9a3j8dfslf1nqx8d53fi635y3aq8isxw0dbjbpgk7rc71nzby"; depends=[]; }; synlik = derive2 { name="synlik"; version="0.1.1"; sha256="0g4n78amydihsq4jg2i9barjm9g40zczasb31fj10yn6wir1dhv7"; depends=[Matrix Rcpp RcppArmadillo]; }; synthACS = derive2 { name="synthACS"; version="1.0.1"; sha256="0jbhiadgc8f6h7ga685cm5i8y59lf76r8sgd629xfjj4jxn8ckdm"; depends=[acs data_table Rcpp]; }; synthpop = derive2 { name="synthpop"; version="1.3-1"; sha256="0vp79jxp4hr9wrc4dlh9ckkcpwiffdixr9jh1w6w1wkii3bjcani"; depends=[foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; }; - sys = derive2 { name="sys"; version="1.1"; sha256="1wik7rbnd0a1mq52ziknil6rjyrsmwgyhkzr9pb5c7vxqydp0jnj"; depends=[]; }; + sys = derive2 { name="sys"; version="1.2"; sha256="01spav1mr1mbpfgxjx0xvi9m5n2s41pdad0qs3kv0hrxcfmwgy6g"; depends=[]; }; sysfonts = derive2 { name="sysfonts"; version="0.5"; sha256="1vppj3jnag88351f8xfk9ds8gbbij3m55iq5rxbnrzy89c04zpzp"; depends=[]; }; sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; - systemfit = derive2 { name="systemfit"; version="1.1-18"; sha256="0sy0v0iz4qzrmazp5j63d62xvlyi9mw5ryd4msd1xmppdl7r453p"; depends=[car lmtest MASS Matrix sandwich]; }; + systemfit = derive2 { name="systemfit"; version="1.1-20"; sha256="1qzgx4hn6f71hnk70ccf6inajprrb6my5af8q2manz41577z0ka7"; depends=[car lmtest MASS Matrix sandwich]; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4"; sha256="1qpimrfr75l6phr425m7av02l57yyn1n2if7h26cndf9ynmv6vz1"; depends=[lpSolve Rcpp]; }; - syuzhet = derive2 { name="syuzhet"; version="1.0.0"; sha256="15qkjnnyf8fsiknr5jb550v34xs55x6psskbrkvr1vfwvbivkzcf"; depends=[dtt NLP openNLP zoo]; }; + syuzhet = derive2 { name="syuzhet"; version="1.0.1"; sha256="0b0w98mx0zf28c55qmv93hfcfcjplrfk68qk2691fas23q14jn56"; depends=[dtt NLP openNLP zoo]; }; taRifx = derive2 { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; }; tab = derive2 { name="tab"; version="3.1.2"; sha256="1vc5swfy9p3bsv5bqqgk4w81apzk6d0m1xz0cbhii7rpn7x6zh1h"; depends=[gee survey survival xtable]; }; taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; }; @@ -9617,6 +9868,7 @@ in with self; { tawny = derive2 { name="tawny"; version="2.1.6"; sha256="0s6p0nnz1rpcnn2yfj1vvl54g57d8rv5s4y09azwz1z5ls7vnnlv"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; }; tawny_types = derive2 { name="tawny.types"; version="1.1.3"; sha256="1v0k6nn45rdczjn5ymsp2fqq0ijnlniyf3bc08ibd8yd1jcdyjnj"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; }; taxize = derive2 { name="taxize"; version="0.8.4"; sha256="03zfrkcpkbzqkm3w9m9g34nhrrp36l630l8rhpnsnkqnfxybb3yv"; depends=[ape bold data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble worrms xml2]; }; + taxonomizr = derive2 { name="taxonomizr"; version="0.2.2"; sha256="0drzsbr23kr3da6bawjrz8rl976mai0vcz19fr5aypsliqz32b41"; depends=[data_table R_utils RSQLite]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; }; tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; }; @@ -9631,7 +9883,7 @@ in with self; { teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; }; teigen = derive2 { name="teigen"; version="2.2.0"; sha256="0ljm8dz4hndnc37psr7mnl1gbxs1kghygz3cyqzld1xpjwsjc2cz"; depends=[]; }; telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; - tempR = derive2 { name="tempR"; version="0.9.9.9"; sha256="1g2rj26a9zm4qbq2k325h112bb6w8qgifhzd1zhc2vql0bk6i18k"; depends=[]; }; + tempR = derive2 { name="tempR"; version="0.9.9.10"; sha256="1lrl3q51xy598kpak97im7r0cp61zb7lygwxkib2ryskihrcfk7b"; depends=[]; }; tempcyclesdata = derive2 { name="tempcyclesdata"; version="1.0.1"; sha256="0hciachv59kjpjs119r4z24jskzgnassi1yjg3cgl2r0hyglxxc3"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="0.25.0"; sha256="0zi11jqb3i5kd2z1bbkz8y7g16kmkcn3xpkwj2brv0s86wxwsny7"; depends=[]; }; templates = derive2 { name="templates"; version="0.1.0"; sha256="133gzc7hz0dh1myv7b0rmcz14x0n1gy7pj948gci70sikvdvbvp5"; depends=[dat magrittr modules stringr]; }; @@ -9639,30 +9891,33 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.1"; sha256="1rnsff1ypwhn5z0xsxyk2z7jl6igscma1a0w613i81qf37iy81ba"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.2"; sha256="0bwqv5cxr5lf2p6xa2p03kwhanrzskz8k3xif1myfjhdw1vzyqib"; depends=[JADE Rcpp RcppArmadillo tensor tsBSS]; }; + tensorflow = derive2 { name="tensorflow"; version="0.7"; sha256="0hiz29r79snk4zcpprf6imi8lknn9n791h1svdajyicsd0zi458v"; depends=[reticulate yaml]; }; + tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; }; tergm = derive2 { name="tergm"; version="3.4.0"; sha256="19658k5570z8yxpklbbl87a7pd8i4yygi0ky8lgzb8qymds90v4s"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; }; termstrc = derive2 { name="termstrc"; version="1.3.7"; sha256="12bycwhjrhkadafcckc30jr0md0ssj21n4v75yjhy21yvqjx1d7a"; depends=[lmtest Rcpp rgl sandwich urca zoo]; }; ternvis = derive2 { name="ternvis"; version="1.1"; sha256="16q1a1ns7q0d46js2m1hr6zm8msg3ncgp8w7yrwch11xq0759sb4"; depends=[dichromat mapdata maps maptools quadprog]; }; - tesseract = derive2 { name="tesseract"; version="1.3"; sha256="17rk3m4rd2qk8vhnkrnn6sffdlvg1amvawdkfp0fi2ip3p0qcrs4"; depends=[curl digest Rcpp]; }; + tesseract = derive2 { name="tesseract"; version="1.4"; sha256="1ycrclv4njbpwrdmh390pnyaczp7xk0ivkscfbr725mavq6xpvi7"; depends=[curl digest Rcpp]; }; testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; }; tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.6"; sha256="05ll0vg30gbb2x7pal6a5ms94nmxj86fzx4ahggrr96cpxyhy8lv"; depends=[]; }; testthat = derive2 { name="testthat"; version="1.0.2"; sha256="0pj1r01x4ny4capr83dfa19hi5i2sjjxky99schzip8zrq5dzxqf"; depends=[crayon digest magrittr praise R6]; }; + texPreview = derive2 { name="texPreview"; version="1.0.0"; sha256="1i34w1804p3qwmijj2lqmfjy909axfp8icllr1nilfqbsrrmssbi"; depends=[magick magrittr rstudioapi svgPanZoom xml2 xtable]; }; texmex = derive2 { name="texmex"; version="2.3"; sha256="0hh633hlzmjrlind51kjs7s1zpx8bwcwfa93yl4swfvn501j1hy9"; depends=[ggplot2 mvtnorm]; }; texmexseq = derive2 { name="texmexseq"; version="0.3"; sha256="08zjsb541xqqs3lj7avx5147g2d0bh3v036x615srjx2pbxzhsvg"; depends=[dplyr ggplot2 testthat]; }; - texreg = derive2 { name="texreg"; version="1.36.18"; sha256="1lzjs651b4mmjjgzkbdzdl3nk3g3kd5bzzj7ssfqvbkk7kp6g3rq"; depends=[]; }; + texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; }; text2vec = derive2 { name="text2vec"; version="0.4.0"; sha256="1ipggg63s16gb72fr7kpmc4z8v6ylp4kw7kb9bk6pccg9iz54i5a"; depends=[data_table digest foreach irlba magrittr Matrix R6 Rcpp RcppParallel]; }; - textTinyR = derive2 { name="textTinyR"; version="1.0.3"; sha256="09wiql4fiw5zzilvfa3y6cqxpgifilf52kvvc7svmjc2abh3afz3"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; + textTinyR = derive2 { name="textTinyR"; version="1.0.5"; sha256="14jk28zydpqjpkvai3bvvaxgv0lrry0vb42l8mkqx97smfv5yq4j"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textcat = derive2 { name="textcat"; version="1.0-5"; sha256="039bzyz4jvh1hl2a2pfp328kr2mpb1a07j79yqf5cbqk3d5a197b"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.3.1"; sha256="1k8wjzzh6nplrnyxq4cd7q4q0sn2fa5p5r2kaq2rd4j9sqrrypp0"; depends=[english qdapRegex stringi textshape]; }; textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-4"; sha256="1ky22xar980afyydddahppad9m263mxnrdqpj1fcbmdhg8flwjgz"; depends=[distrom gamlr Matrix]; }; - textmineR = derive2 { name="textmineR"; version="2.0.4"; sha256="127ngmzvzsb8pbwv6f4k76jv3aqrmpwpbx29cic39m05zxjxxm7k"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; + textmineR = derive2 { name="textmineR"; version="2.0.5"; sha256="138qscgpxkkza0x6lbjrlqf1f1nvj369rw5rvjp5xj9bh7sd62xs"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; }; textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; }; textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; textreadr = derive2 { name="textreadr"; version="0.3.1"; sha256="0l8aiad16m7lgak61lwi7j03mkrzkjvp1fwi8b4xmgfn3mg797zq"; depends=[curl pdftools readxl textshape XML]; }; - textreg = derive2 { name="textreg"; version="0.1.3"; sha256="0wp1yybhcybb77aykk9frrylk4kjn0jc98q488195qzx7m5n7ccw"; depends=[NLP Rcpp tm]; }; + textreg = derive2 { name="textreg"; version="0.1.4"; sha256="0k7hpvvhacz29d3mvnygg6rqmh9f3ghkcp7kjmvv9jnr2ipw2j21"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; }; textshape = derive2 { name="textshape"; version="1.0.2"; sha256="0p9n003z98aqk272wcj02z0c5dzaw01iyfbd0fjyccgkidyaz49h"; depends=[data_table slam stringi]; }; textstem = derive2 { name="textstem"; version="0.0.1"; sha256="09010a5flly5kiifx2jha5zvwncpk1xsgx2idipjnrav01plhin2"; depends=[dplyr hunspell koRpus lexicon quanteda SnowballC textshape]; }; @@ -9676,6 +9931,7 @@ in with self; { tglm = derive2 { name="tglm"; version="1.0"; sha256="1gv33jq3bzd5wlrqjvcfb1ax258q9asawkdi64rbj18qp7fg2dbx"; depends=[BayesLogit coda mvtnorm truncnorm]; }; tgp = derive2 { name="tgp"; version="2.4-14"; sha256="1l3kssjkh5sbrh75qdpmynjfnidgz8vmzq1jml1qm1yfwval8ak1"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-2"; sha256="091g6j5ry1gmjff1kprk5vi2lirl8zbynqxkkywaqpifz302p39q"; depends=[zoo]; }; + thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thgenetics = derive2 { name="thgenetics"; version="0.3-4.1"; sha256="05g5rwdpnd1b4h1lay2l1s0ns2q6a7sav8d4zrxaqgzhaafnpxyv"; depends=[]; }; thief = derive2 { name="thief"; version="0.2"; sha256="14xl5l7iw0nwbz5zzd00c8ihfclvhfcazvysr8rapsq1j2r5dfck"; depends=[forecast forecTheta ggplot2 hts]; }; @@ -9685,13 +9941,13 @@ in with self; { threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.2"; sha256="1r2p4mcj1myay5qgwvdprh3qvb2gzg2lbcci24hfx5c8dmsc39fd"; depends=[Formula survival]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; - tibble = derive2 { name="tibble"; version="1.2"; sha256="011i352ylq9b4xfcj7h10h7qsqd9qkc1rzc0pr1gf8qjb788p2pd"; depends=[assertthat lazyeval Rcpp]; }; + tibble = derive2 { name="tibble"; version="1.3.0"; sha256="1q25i1cv3qms6d3lw7jd3z142w188znkcbyam460gn9si8l8g2bk"; depends=[lazyeval Rcpp]; }; tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.0"; sha256="1n8lbw3g9x1i6rjj3gsyzwnb0ailw9vb6vgr0s0h21c0g1z66a74"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; }; tidyRSS = derive2 { name="tidyRSS"; version="1.0.1"; sha256="0nm5kbwf8i03n2si81iwf55cmc7q9x1rvg2zlq8fw00kmp0amwzs"; depends=[dplyr httr lubridate magrittr purrr RCurl XML xml2]; }; tidyjson = derive2 { name="tidyjson"; version="0.2.1"; sha256="178lc4ii4vjzvrkxfdf5cd9ryxva9h2vv4wl6xgxgaixkab9yv9w"; depends=[assertthat dplyr jsonlite]; }; - tidyquant = derive2 { name="tidyquant"; version="0.3.0"; sha256="1fn78ibi9c0a14kr54yca489xjac1j58w8g77il61czqq8bn5hdv"; depends=[curl devtools dplyr ggplot2 lubridate magrittr purrr quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries tseries TTR xml2 xts zoo]; }; + tidyquant = derive2 { name="tidyquant"; version="0.5.0"; sha256="0zwwlybh07kr8j4qvsx6bbbh14lc89vswn8rgnv2pgbf4337bzv3"; depends=[broom curl devtools dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod readr rvest scales stringr tibble tidyr tidyverse timeSeries tseries TTR xml2 xts zoo]; }; tidyr = derive2 { name="tidyr"; version="0.6.1"; sha256="11hs3gqpbaw3w281as4m7j9n594ix5axfpwbyjsd0l62pwnzj217"; depends=[dplyr lazyeval magrittr Rcpp stringi tibble]; }; tidytext = derive2 { name="tidytext"; version="0.1.2"; sha256="1pmr7bajlcv2s42qmiz1c6723scqmlfky1ajb7hrp8h3bf7sv0cm"; depends=[broom dplyr hunspell janeaustenr Matrix purrr stringr tokenizers]; }; tidyverse = derive2 { name="tidyverse"; version="1.1.1"; sha256="1ahxs7xzik27xdbzc1ccrkq5knzrn8xf82x3dhh94xi5c8p3ysqx"; depends=[broom dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl rvest stringr tibble tidyr xml2]; }; @@ -9706,22 +9962,23 @@ in with self; { tigris = derive2 { name="tigris"; version="0.3.3"; sha256="11wpxzh7045n9ss5rjhiz2b6cmgj7rnfwrxwnp9kqf0dcaaqx0hv"; depends=[httr magrittr maptools rappdirs rgdal rgeos sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.10-1"; sha256="1fjxzmp9wrf9bigzb4hkp2cb64sd6x4yhrjd6gryw17cqrblhicg"; depends=[filehash png]; }; tileHMM = derive2 { name="tileHMM"; version="1.0-7"; sha256="1ks4b6h15982jh3ls9fz8hq9ac1wf5hfjsvdqcmnba8n3m5zm651"; depends=[corpcor st]; }; - tilegramsR = derive2 { name="tilegramsR"; version="0.1.4"; sha256="1flwi9vxq5l92j47z88s50m6k3av2af43bpcmy8j1xkaygic2dlv"; depends=[sp]; }; + tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; time2event = derive2 { name="time2event"; version="0.1.0"; sha256="1xkvarw53lcn07wqq7ly5znr6vjq7x72xb0piq5igdmwqmg2y26g"; depends=[survival timereg]; }; timeDate = derive2 { name="timeDate"; version="3012.100"; sha256="0cn4h23y2y2bbg62qgm79xx4cvfla5xbpmi9hbdvkvpmm5yfyqk2"; depends=[]; }; timeROC = derive2 { name="timeROC"; version="0.3"; sha256="0xl6gpb5ayppzp08wwry4i051rm40lzfx43jw2yn3jy2p3nrcakb"; depends=[mvtnorm pec]; }; timeSeq = derive2 { name="timeSeq"; version="1.0.2"; sha256="05ncs12afww2apa9sm71x30kjp3ns2l6c5dzrbc2inmy2bss5fy6"; depends=[doParallel foreach gss lattice pheatmap reshape]; }; timeSeries = derive2 { name="timeSeries"; version="3022.101.2"; sha256="0yr5j8w6p0k05g76hjhkrbx3vb166p5916grigc1yag6baj6nsij"; depends=[timeDate]; }; - timedelay = derive2 { name="timedelay"; version="1.0.5"; sha256="1b3qm46xyrssla11kcxmy9j5bhy9bzcqfvalwny3cgbjmzsc0pa9"; depends=[mnormt]; }; + timedelay = derive2 { name="timedelay"; version="1.0.6"; sha256="063pn1h8lr75bdqyxb90l2w50lq8lzmggv4x0575r3l292rbqwpr"; depends=[mnormt]; }; timeit = derive2 { name="timeit"; version="0.2.1"; sha256="0fsa67jyk4yizyd079265jg6fvjsifkb60y3fkkxsqm7ffqi6568"; depends=[microbenchmark]; }; + timekit = derive2 { name="timekit"; version="0.1.0"; sha256="0pjnckwwhh4kf804nnpw7w2s9g7s7illmnfxw3jmx8qgbqk2q53v"; depends=[devtools dplyr forcats forecast lazyeval lubridate purrr quantmod readr scales tibble tidyquant tidyr timeSeries tseries TTR xts zoo]; }; timeline = derive2 { name="timeline"; version="0.9"; sha256="0zkanz3ac6cgsfl80sydgwnjrj9rm7pcfph7wzl3xkh4k0inyjq3"; depends=[ggplot2]; }; timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.8"; sha256="1j0x2v22ybyl3l9r3aaz5a3bxh0zq81rbga9gh63zads2xy5axmf"; depends=[igraph plyr]; }; timereg = derive2 { name="timereg"; version="1.9.0"; sha256="1rhnbi2gs1pc2nsqcf1qs3x6v1c83l21p1yq8invzgikwdmg4dhy"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; }; - timetools = derive2 { name="timetools"; version="1.9.1"; sha256="12q3lbma8w3961apsifikngm17lw9vj2xl29rygdiizmk61ll4ha"; depends=[]; }; + timetools = derive2 { name="timetools"; version="1.11.4"; sha256="0sny0kbadpgaa84xbh0d8blhc8gz2l8gp5f98zfc1jq7m6jm5km8"; depends=[]; }; timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; }; timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; }; timma = derive2 { name="timma"; version="1.2.1"; sha256="1pypk0pwkhyilh1hsn8hasia1hf6hbskj0xw6vas03k19b6fjnli"; depends=[QCA Rcpp RcppArmadillo reshape2]; }; @@ -9736,7 +9993,7 @@ in with self; { tkrgl = derive2 { name="tkrgl"; version="0.7"; sha256="1kpq5p6izqrn1zr53firis3rmifq9lf6326lf3z7l1p82nf2yps5"; depends=[rgl]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; - tlm = derive2 { name="tlm"; version="0.1.4"; sha256="041ydlbsn0dxggrvfjfpg2jmns3c4z021f64cl2k1lwmxvqrp265"; depends=[boot]; }; + tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; tm = derive2 { name="tm"; version="0.7-1"; sha256="1z76ryka8yd9xwcqgla8v7mgh6wc14mqpmygv958nfy5sf2w4k8q"; depends=[BH NLP Rcpp slam]; }; tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; }; @@ -9756,14 +10013,14 @@ in with self; { tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; - tnam = derive2 { name="tnam"; version="1.6.2"; sha256="09wqsqjssnzirx387y2mdd6qa38hlbf1d8s0dwzsz2jxx4w8xp01"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; + tnam = derive2 { name="tnam"; version="1.6.5"; sha256="0jbwnsnn6875yprmh6y2i0bvr875hfsg7wfsj6ydmjpr5cpqqk56"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; }; tnet = derive2 { name="tnet"; version="3.0.14"; sha256="05cc6jrkjbwxzmgzq30h63xzhlgq8f0l3wx2q54vrv0wpvlvfphn"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="0.0-6"; sha256="13mp6sxjbn1piw2q018nb4hznzsa2c7pkvmlv74f8qsjrvvw1h4x"; depends=[]; }; toaster = derive2 { name="toaster"; version="0.5.5"; sha256="0ga4l3zp422scrgvz701rjznn013vhsbp4gh7v1inqp7kpxafky9"; depends=[foreach GGally ggmap ggplot2 ggthemes memoise network plyr RColorBrewer reshape2 RODBC scales slam wordcloud]; }; tokenizers = derive2 { name="tokenizers"; version="0.1.4"; sha256="1qcsmcd74i39wql9p49g3pzc4flpi8jq9sxia5mcdx054viijgk9"; depends=[Rcpp SnowballC stringi]; }; tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; }; tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; }; - topicmodels = derive2 { name="topicmodels"; version="0.2-5"; sha256="1kilkwfhs7295w410xv34np1cr1wdwqxq1776mg24z4f8a56ccrw"; depends=[modeltools slam tm]; }; + topicmodels = derive2 { name="topicmodels"; version="0.2-6"; sha256="13z04bgr6nxn5mr7891nm8ryixfp988ad9vmfjy4li9jsyr48q6d"; depends=[modeltools slam tm]; }; topmodel = derive2 { name="topmodel"; version="0.7.2-2"; sha256="1nqa8fnpxcn373v6qcd9ma8qzcqwl2md347yql3c8bpqlm9ggz16"; depends=[]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; @@ -9773,7 +10030,7 @@ in with self; { tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; }; toxboot = derive2 { name="toxboot"; version="0.1.1"; sha256="0sw0mxhcq5k11swlhfpn6xk0nfsambh2yx1721zx75lya27wkmq1"; depends=[data_table tcpl]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; - tpAUC = derive2 { name="tpAUC"; version="2.0.1"; sha256="066fzlkcdma3id56i9qm3bpq9a9lamqkq00qlz7paqxsfph1rn5k"; depends=[pROC]; }; + tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpe = derive2 { name="tpe"; version="1.0.1"; sha256="0zsa8vb4qmln3sb4lplv43lh50yys9vfd3rxfp6qxqqjxivd0xsh"; depends=[]; }; tpr = derive2 { name="tpr"; version="0.3-1"; sha256="0nxl0m39zaii6rwm35hxcdk6iy2f729jjmhc2cpr8h0mgvgqf19d"; depends=[lgtdl]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; @@ -9791,9 +10048,9 @@ in with self; { translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translateSPSS2R = derive2 { name="translateSPSS2R"; version="1.0.0"; sha256="11qnf44aq0dykcsv29faa9r4fcw9cc9rkgczsqx3mngvg3bilada"; depends=[car data_table e1071 foreign Hmisc plyr stringr tidyr zoo]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; - transport = derive2 { name="transport"; version="0.8-1"; sha256="1lz5gn9rrg1lyxl6l0r2b0vj4756xq0gb41mfg2darww6b4ifx5v"; depends=[]; }; + transport = derive2 { name="transport"; version="0.8-2"; sha256="0l6scyfw8ygzjg2b0q04k3mkrmhv8gj4hmjkkcqvpa7q1cnma10h"; depends=[]; }; trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; }; - treatSens = derive2 { name="treatSens"; version="2.0.1"; sha256="0gb14f9dfa9slppl2a2bchkli51rprw6wzyzrkxlfqlski0piymf"; depends=[dbarts]; }; + treatSens = derive2 { name="treatSens"; version="2.1"; sha256="1d0nhyrnfcl0llrpslfqhgpyf9h4fp2a178v5vjy4m9rmqymmrql"; depends=[BH dbarts mvtnorm Rcpp RcppEigen rstan StanHeaders]; }; tree = derive2 { name="tree"; version="1.0-37"; sha256="091297qhvqhgjmnyr96jkwaghz8dkbf03rnhwfhks8bsgax6jl13"; depends=[]; }; treeClust = derive2 { name="treeClust"; version="1.1-6"; sha256="07cw8mnfrkw733ga3aq4am1pj50g8vk0rw6b3lflnb4wdhm2fgbi"; depends=[cluster rpart]; }; treeHFM = derive2 { name="treeHFM"; version="1.0.3"; sha256="10pyvyyz9ia4dpj8zkil56ipbvbks5xh0n9hkdy0hcinsyq0ba29"; depends=[mclust]; }; @@ -9806,6 +10063,7 @@ in with self; { treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; }; treeplyr = derive2 { name="treeplyr"; version="0.1.2"; sha256="03bfl7pqhw2isffnfli82bw6la41rfqcshh9dhlbnlwr7yj69m4x"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; }; treescape = derive2 { name="treescape"; version="1.10.18"; sha256="1vfyqap1696pz212x7jqrga94a8vs61r6fr7vh86nxiayf6fz7b3"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; }; + treespace = derive2 { name="treespace"; version="1.0.0"; sha256="1dc98p5jf9qyr31xa7h7v2zrjmhd3jlzrh2cpmnmhbpfm1cviskj"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn Rcpp RLumShiny scatterD3 shiny shinyBS]; }; treethresh = derive2 { name="treethresh"; version="0.1-9"; sha256="1fmnmfgaysbnqn002zgcm1d2kpzc7is2k2z859hj0h0ll3yjp592"; depends=[EbayesThresh wavethresh]; }; trelliscope = derive2 { name="trelliscope"; version="0.9.7"; sha256="1hczmi3hjlk1nqd4p2m2hs89a86jrg59rraxw5z5fm0pa92xnzqy"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; }; trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; }; @@ -9843,9 +10101,9 @@ in with self; { tscount = derive2 { name="tscount"; version="1.3.0"; sha256="0zbm096z8nlbk9rd5qkvw5285wpz7qx8avi1md3zv64zmqmny7qa"; depends=[ltsa]; }; tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; - tseries = derive2 { name="tseries"; version="0.10-38"; sha256="1gs6i28v1v349z7ficzyy9pfrm3aw5x8pldrihm3wg8wvs22jwv5"; depends=[quadprog zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-40"; sha256="1mbb44k428m0l7dqdw4fq63div4kic02fdlwb8vx7zl2s1614a34"; depends=[quadprog zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13"; sha256="0f2hycxyvcaj3s1lmva1qy46xr6qi43k8fvnm4md5qj8jp2zkazg"; depends=[deSolve]; }; - tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.5-12"; sha256="0z9354mlj0nh829ccwwhs53q5myfp31x9n6kv1k8gmvz5xma40kh"; depends=[cubature]; }; + tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfa = derive2 { name="tsfa"; version="2014.10-1"; sha256="0gkgl55v08dr288nf8r769f96qri7qbi5src7y6azrykb37nz6iz"; depends=[dse EvalEst GPArotation setRNG tfplot tframe]; }; tsiR = derive2 { name="tsiR"; version="0.1.0"; sha256="1h14qpg542zr41dr5vrd34aj6ss3z7c4lzvb5bfaha72zbca1l6s"; depends=[ggplot2 kernlab reshape2]; }; tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; @@ -9853,20 +10111,23 @@ in with self; { tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; }; tsoutliers = derive2 { name="tsoutliers"; version="0.6-5"; sha256="1d2m51mlqw4npm7vmbaayj4s3rvsrf33abld947ryqvzi5zrwpim"; depends=[forecast KFKSDS stsm]; }; tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; + tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; }; + tsxtreme = derive2 { name="tsxtreme"; version="0.3.1"; sha256="0cfska93ws5x11pslcdhf5rrshxzh6ddlgmfkl9zlci2rqdbwz35"; depends=[evd MASS mvtnorm]; }; ttScreening = derive2 { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; tth = derive2 { name="tth"; version="4.3-2-1"; sha256="19rvmyprl1nk9mmngk6dax8rnli10msfvm3vzp86pbdjxnsh3hjc"; depends=[]; }; tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; }; ttutils = derive2 { name="ttutils"; version="1.0-1"; sha256="18mk30070mcplybg320vjbk9v5flxnbqi5gx0yyr1z6ymjmnrxbc"; depends=[]; }; ttwa = derive2 { name="ttwa"; version="0.8.5.1"; sha256="1lhypcwssq0dspizvln3w4dg16ad6mz8cj4w34c5vsrayqid7fyn"; depends=[data_table]; }; - tuber = derive2 { name="tuber"; version="0.7.0"; sha256="1fcls8q4ihz50wnar87047i8il32a1nrxw67nv9wjqfi02z74c2p"; depends=[httr plyr]; }; + tuber = derive2 { name="tuber"; version="0.8.0"; sha256="1sqj8mrpsgc553qcnafg07i7issmjfrxgdw2ppin88d7s2axf5cn"; depends=[httr plyr]; }; + tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; }; tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.0"; sha256="0pxsnvzh5gy5dsdsqsmq8hkr597dnnv60b5dw7bqw493lavk2ccm"; depends=[]; }; tufte = derive2 { name="tufte"; version="0.2"; sha256="0yh5xdxapqpf5hgdn8c2jkk63817l2w6bxavw8457r89rnj1022p"; depends=[htmltools knitr rmarkdown]; }; tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; }; tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; }; tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; }; - tuneR = derive2 { name="tuneR"; version="1.3.1"; sha256="0m0fc8bx7645ddbcsvgwamfsd7rklz05wi8yc9p0kf2k5sbn48r3"; depends=[signal]; }; + tuneR = derive2 { name="tuneR"; version="1.3.2"; sha256="1xk66rrahfvvbjzpx2mkbmlmyj0l3vidd8kz24f72wh56gbdgbsa"; depends=[signal]; }; tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; }; turboEM = derive2 { name="turboEM"; version="2014.8-1"; sha256="0g9nm1m542hslz8272n5qz6h59criyf71l2w218dvq34bcjcd3yy"; depends=[doParallel foreach iterators numDeriv quantreg]; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; }; @@ -9879,6 +10140,7 @@ in with self; { tweenr = derive2 { name="tweenr"; version="0.1.5"; sha256="06h0vhxlljmvxg4a62sqrq53lpbvl5w19dqcpyw1jqvrb5agidnq"; depends=[Rcpp]; }; tweet2r = derive2 { name="tweet2r"; version="1.0"; sha256="0v7xshk389k3aws72ww9kqc2ycw6l6q9xmhps47g3bdl64jy8bay"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; }; twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; }; + twilio = derive2 { name="twilio"; version="0.1.0"; sha256="0b70vcc2bd5jpd2d82i2k828q90viah0b9abz2r627bbyxivpcnd"; depends=[httr jsonlite lubridate magrittr purrr]; }; twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; @@ -9892,9 +10154,10 @@ in with self; { udapi = derive2 { name="udapi"; version="0.1.0"; sha256="0hwnrx9qkazja288m6irmwwybiys9npk6sk60acjdczsfrn1hvl0"; depends=[curl httr]; }; udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; }; uiucthemes = derive2 { name="uiucthemes"; version="0.1.1"; sha256="0d1agg94z0qy6k4pbv01p1xb0zh42gkjl5i9kbqblplnk2swkzyi"; depends=[rmarkdown]; }; + ukds = derive2 { name="ukds"; version="0.1.0"; sha256="00lgr9jy57bwa8p38mqcf4fk29g2w2wqk3pwf9av6f5lapzzgc94"; depends=[magrittr rio RSelenium stringr]; }; ukgasapi = derive2 { name="ukgasapi"; version="0.13"; sha256="0bnblha96ldbxj0nqhcj26d1dk2xm6nkjqqval1jlc2pki20mr9n"; depends=[RCurl XML]; }; - ump = derive2 { name="ump"; version="0.5-6"; sha256="1nd6miz9scc6llckafl73pxiqh0ycfhlsmn2l0swcvjxpj3kb0zv"; depends=[]; }; - umx = derive2 { name="umx"; version="1.5.0"; sha256="0b011ym5hai9c7r1lgr9y3yhscrwq77h6q6llkhklkz35qbz4056"; depends=[DiagrammeR knitr MASS Matrix mvtnorm numDeriv OpenMx polycor R2HTML RCurl sfsmisc]; }; + ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; + umx = derive2 { name="umx"; version="1.7.5"; sha256="1pzxf2ghds4wdqky670da4ig17g9knwmckx3c3sb7pmin75k79vz"; depends=[DiagrammeR knitr MASS Matrix mvtnorm numDeriv OpenMx polycor R2HTML RCurl sfsmisc]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; unfoldr = derive2 { name="unfoldr"; version="0.6"; sha256="1chxd6b353s56rl78wxr8zzh2vvnj7wbjl6xnakhcchcfqr4zjqd"; depends=[]; }; @@ -9906,9 +10169,11 @@ in with self; { uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; }; uniqueAtomMat = derive2 { name="uniqueAtomMat"; version="0.1-2"; sha256="15d6s44n1cvhpjsmwjly3nqq7q2zpi2ws6cw5jrxb97gacma896n"; depends=[]; }; unitedR = derive2 { name="unitedR"; version="0.2"; sha256="0glcyji0cypb2687cvyra0zzlzbq0md7qb60abgi0199hf51q3dj"; depends=[plyr]; }; - units = derive2 { name="units"; version="0.4-2"; sha256="0c7nys38157wimmqqz7hglar343nfqkvbaf0bl6by5lbql0kj2vq"; depends=[udunits2]; }; + unitizer = derive2 { name="unitizer"; version="1.4.2"; sha256="19vxxzxwcmrjzg8hacqqscrljx2srznyskbdsdbq7f7xa16z7v5z"; depends=[crayon diffobj]; }; + units = derive2 { name="units"; version="0.4-3"; sha256="0gh324k2wgwdgasvam0mzvcywl0y5s7aqxapqqzgjh4qkl341cgc"; depends=[udunits2]; }; unittest = derive2 { name="unittest"; version="1.2-0"; sha256="1g3f36kikxrzsiyhwpl73q2si5k28drcwvvrqzsqmfyhbjb14555"; depends=[]; }; - unmarked = derive2 { name="unmarked"; version="0.11-0"; sha256="0n5cm17ns464dxd9sdma6f12x1phnvv05aiwgxsj499lk6jazf0l"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; + unix = derive2 { name="unix"; version="1.0"; sha256="17mnlclphpvk6rbd23jda8ksaqcmr2nqbk5ndhh44y3f7f1y2g64"; depends=[]; }; + unmarked = derive2 { name="unmarked"; version="0.12-0"; sha256="0s4m29ynrgw10hylbhq2z1zqzm44j4yy2g5inxwz3hs0blxrap6l"; depends=[lattice plyr raster Rcpp RcppArmadillo reshape]; }; unpivotr = derive2 { name="unpivotr"; version="0.1.0"; sha256="01pbmfm94i4z0xx7lj9pipw88d5szqgqa6j23m4i8cv8kx48r3p7"; depends=[data_table dplyr dtplyr lazyeval magrittr purrr tibble tidyr]; }; unsystation = derive2 { name="unsystation"; version="0.1.1"; sha256="0w5llr2kyv7g5fx5yvlyqwj4da5k5fq1f2y70c9pjdzrny9lpz4q"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; untb = derive2 { name="untb"; version="1.7-2"; sha256="1ha0xj94sz1r325qb4sb5hla9hw1gbqr76703vk792x9696skhji"; depends=[Brobdingnag partitions polynom]; }; @@ -9917,41 +10182,42 @@ in with self; { uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; - uqr = derive2 { name="uqr"; version="0.2.0"; sha256="03v12w1ssfpp3h2aja4wlv6f2x1rplpm3dpmrq78bpyanban2gwf"; depends=[gtools Hmisc]; }; + uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; }; urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; }; urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; }; urltools = derive2 { name="urltools"; version="1.6.0"; sha256="1vyv88x5l0hr4jhn7sics11g8j6817gn4yjpk58b40ynija42kkb"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; }; usdm = derive2 { name="usdm"; version="1.1-15"; sha256="1638fv8if7pcnm6y44w3vbmivgcg4a577zd2jwhmp00vrwml2a9m"; depends=[raster sp]; }; useful = derive2 { name="useful"; version="1.2.1"; sha256="08ihyvyjrdrfba7zasqkg4204nmql4xgwigzs80dks51bpqcq2mv"; depends=[dplyr ggplot2 magrittr plyr scales]; }; - userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.5-2"; sha256="0i5nrfq7hgq3rx43s6p8bxc4yqqjkvn42bbyv6hndzkagp06d2vj"; depends=[car diptest fBasics GGally ggplot2 ggrepel GPArotation gridExtra knitr lavaan MASS MBESS mosaic pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists XML xtable]; }; + userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.6-0"; sha256="167gvg6f55h99iywm463m0vx0sn7c29iyxappi24g7391y9s4aji"; depends=[car data_tree DiagrammeR diptest fBasics GGally ggplot2 ggrepel GPArotation gridExtra gtable knitr lavaan MASS MBESS mosaic pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists XML xtable]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="1.7.0"; sha256="116h8yfij7fkzd8va5w8v977fj2is86vlwzfnv28g3h0avdwysls"; depends=[nlmrt]; }; usmap = derive2 { name="usmap"; version="0.1.0"; sha256="1v255hl31rhzzggilnxsy30hwwbhsmsl6wyj3qnhxkygbnax7ncd"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; }; utility = derive2 { name="utility"; version="1.4"; sha256="088dgi0ybpcrk6g11fs500ymzwshbypikgjy6hxnx79byiwhrscp"; depends=[]; }; - utiml = derive2 { name="utiml"; version="0.1.1"; sha256="118wa66s3cfp00yc9nngf7khaaswrrfj5pb71n66lnxwynf8mdgm"; depends=[mldr]; }; + utiml = derive2 { name="utiml"; version="0.1.2"; sha256="0x30pgsq4j8vm6d95j7g1zc5hmbibjm9q1gphrf2bday2czmzakk"; depends=[mldr]; }; uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; }; uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.3"; sha256="1m8n6bans7kkwriqky92vvv2sbdacyq2pvbv2m5p37q7qk5215c2"; depends=[Exact geepack plyr sandwich survival]; }; vacem = derive2 { name="vacem"; version="0.1-1"; sha256="0lh32hj4g1hsa45v6pmfyj1hw0klk8gr1k451lvs4hzpkkcwkqbn"; depends=[foreach]; }; vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; }; vaersvax = derive2 { name="vaersvax"; version="1.0.4"; sha256="15znkwbhr624qgwlcrdhaxpdfl85ym845mr2sy8b016d3ngz7n94"; depends=[]; }; + valaddin = derive2 { name="valaddin"; version="0.1.0"; sha256="19j3vwg8nrsnqhdvn6865k7pf79cchlf1vkdrlz7w26lnfyzzv7p"; depends=[dplyr lazyeval purrr]; }; validann = derive2 { name="validann"; version="1.2.0"; sha256="1g8svbxyy56kmzm8yxwk9jqwnwsmlvxm87ss7l88arjl5kqgvasq"; depends=[moments]; }; - validate = derive2 { name="validate"; version="0.1.5"; sha256="166605h47bgcx1sf1rlvvgay00v8ykzw55zbfc5jnw9h8j8f7wsb"; depends=[settings yaml]; }; + validate = derive2 { name="validate"; version="0.1.7"; sha256="1z29q7v5dwaa334dp8qg6h2gyiv9a3fggrxzvx4jqjjjmip303db"; depends=[settings yaml]; }; validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; }; validatejsonr = derive2 { name="validatejsonr"; version="1.0.4"; sha256="1n8jf7j3hvz47z1x3gqz5yj5wxfjzz0zgzkgckdvy1nbsqf7w3cr"; depends=[Rcpp]; }; valorate = derive2 { name="valorate"; version="1.0-1"; sha256="06vczszpkipsxfs7h6ld33vvxb5ci62rwg3cglwy3lcfifhbnsfi"; depends=[survival]; }; valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; }; - valr = derive2 { name="valr"; version="0.1.1"; sha256="0pzkaljlwqpk7n6z4f5lvy2f06a1bjsj6b20sxpd64rh302vn6hi"; depends=[BH broom dplyr ggplot2 lazyeval purrr Rcpp readr shiny stringr tibble tidyr]; }; + valr = derive2 { name="valr"; version="0.1.2"; sha256="0n5a70j7hqbvlfv4886cvcdp4a83i86hw0kk5dgxisl9xrsmsrg9"; depends=[BH broom dplyr ggplot2 lazyeval Rcpp readr stringr tibble tidyr]; }; valuer = derive2 { name="valuer"; version="1.1.1"; sha256="1pvzhx5irxww6vb8j4nsanlzgwaa4z96vw4l97h6l27h1403gdkb"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; }; varComp = derive2 { name="varComp"; version="0.1-360"; sha256="18xazjx102j6v1jgswxjdqjb0hq6hd646yhwb7bcplqyls9hzha0"; depends=[CompQuadForm MASS Matrix mvtnorm nlme quadprog RLRsim SPA3G]; }; varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-5"; sha256="1800d9vvkqpxjvmiqdr610hw7ji79j0wsbl823s097dndmv51axk"; depends=[randomForest]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; - varbvs = derive2 { name="varbvs"; version="2.0.0"; sha256="1bi11qcgnw263p1vv25nhcf9b0vf04bl6hpb9agw1rp1f7c9xsrb"; depends=[lattice latticeExtra]; }; + varbvs = derive2 { name="varbvs"; version="2.0-8"; sha256="1bjw90lz1499ykx1q6yj7qd9bks1794s4yf4lz4c7sm0vbdx31x6"; depends=[lattice latticeExtra Rcpp]; }; vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; }; - vardpoor = derive2 { name="vardpoor"; version="0.8.6"; sha256="0jfwrpg85w10m6y4pk06wrbmnvzjby1fiarn3i14dgglba8jcrbl"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; + vardpoor = derive2 { name="vardpoor"; version="0.9.0"; sha256="139msbslzav7grjwvci97x0rmlfqgb83dj2jm9pzf3anrwg230d6"; depends=[data_table foreach gdata laeken MASS plyr stringr surveyplanning]; }; varhandle = derive2 { name="varhandle"; version="2.0.1"; sha256="06n13dyq41dr0gsq2bzkqqraqqkab93n7gimln4ckkdnrv0a1crx"; depends=[]; }; variables = derive2 { name="variables"; version="0.0-30"; sha256="182c8c7cwkmrpk01bki94y6f3wgf2zdjvvcfa4paa6bfq8w9ckh3"; depends=[]; }; varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; }; @@ -9968,7 +10234,7 @@ in with self; { vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; vecsets = derive2 { name="vecsets"; version="1.1"; sha256="0k27g3frc9y9z2qlm19kfpls6wl0422dilhdlk6096f1fp3mc6ij"; depends=[]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.4-2"; sha256="12wf64izrpq9z3ix7mgm5421mq0xsm8dw5qblvcrz452nfhjf5w9"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.4-3"; sha256="15zcxfix2d854897k1lr0sfmj2n00339nlsppcr3zrb238lb2mi5"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.0-1"; sha256="19xwbmnmhdvm8vsfjv17bhbjrlsr2wwgjj0nflw8kgmlz0d2f70k"; depends=[cluster rgl scatterplot3d vegan]; }; vegclust = derive2 { name="vegclust"; version="1.6.5"; sha256="0y1lh4d2i3nxgc30wp6f14v2p14bx399y4cr5r7gv2gi76c5bhj4"; depends=[sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9"; sha256="0hk56nbzg1c1q6shz9b04d60w9gd71f4fhyy89l98mcr41g8hjbc"; depends=[foreign httr jsonlite XML]; }; @@ -9978,9 +10244,11 @@ in with self; { vembedr = derive2 { name="vembedr"; version="0.1.2"; sha256="0pqjf55rgylszgmzdhzr7m0lcqw3dw6c49i45r39yiq3wprc55qa"; depends=[htmltools httr magrittr stringr]; }; venn = derive2 { name="venn"; version="1.2"; sha256="18il18i13p92dm167c6mwppzjldp2blq482l5206lp1gqvxyc7f0"; depends=[]; }; venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; }; + vennplot = derive2 { name="vennplot"; version="0.9.01"; sha256="1p55sjhgi7wry2avf38i222yb52iam7nwq5g0w615hiajz3y7s2z"; depends=[Rcpp rgl stringr]; }; verification = derive2 { name="verification"; version="1.42"; sha256="0pdqvg7cm9gam49lhc2xy42w788hh2zd06apydc95q2gj95xnaiw"; depends=[boot CircStats dtw fields MASS]; }; versions = derive2 { name="versions"; version="0.3"; sha256="0zm49j785dgv7fyr1yl9q5f0dsk8hhpim5q5bpkgrkzv7pwjribd"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.1"; sha256="060sfa22m35d1hqxqngxhy7bwjihf6b4sqa1kg5r0cqvdw9zg51d"; depends=[numbers]; }; + vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; }; vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; @@ -9988,9 +10256,9 @@ in with self; { violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; }; vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; - vipor = derive2 { name="vipor"; version="0.4.4"; sha256="0p1z9a3fazl78pj8a1i2n62v8hrs8cinq82j9wpawhmfkn3dggss"; depends=[]; }; - viridis = derive2 { name="viridis"; version="0.3.4"; sha256="1a9hqn2pccpc51vh8ghw698ni6xzdnp8v0n8kgjh51nlz5hhc87j"; depends=[ggplot2 gridExtra]; }; - viridisLite = derive2 { name="viridisLite"; version="0.1.3"; sha256="1b0fhj8i1m9jsz91gzag60k7vy7kk5xkdg31rc3h3spq96l66psp"; depends=[]; }; + vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; + viridis = derive2 { name="viridis"; version="0.4.0"; sha256="03mha2935k1mw7mjjkq7mrx185hl0m3vq3967iiwbknpivbdxllk"; depends=[ggplot2 gridExtra viridisLite]; }; + viridisLite = derive2 { name="viridisLite"; version="0.2.0"; sha256="1546h44ng4dxs130jkh6lkh990hmp90m1w45sq5p47n546gr0k9d"; depends=[]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.4-1"; sha256="02n83j10z7m8bjlavm2c6v58z1flhxn36j0h00c5xm085brzww3y"; depends=[ade4 dismo raster rworldmap]; }; virustotal = derive2 { name="virustotal"; version="0.2.0"; sha256="0c2ig1wki08cq41ma1bawxgyzlkqv2j6kjlsapdry12vm42rz1yc"; depends=[httr plyr]; }; visNetwork = derive2 { name="visNetwork"; version="1.0.3"; sha256="0wq37srnra6vzzw3d3c5lfvdqpd5329s73zrr9cd2saa6ski23i1"; depends=[htmltools htmlwidgets jsonlite magrittr]; }; @@ -10002,6 +10270,9 @@ in with self; { vitality = derive2 { name="vitality"; version="1.2"; sha256="0vjbf39i7qm3857gyidg2j5hfimpydav1sx2d07n12b8q1cs8k4p"; depends=[]; }; vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; }; vmsbase = derive2 { name="vmsbase"; version="2.1.3"; sha256="1y4r1f6miwxx3q8pajyh202wvjz08w6291jvpv723qyxa6z1r69a"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets gWidgetsRGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; }; + vocaldia = derive2 { name="vocaldia"; version="0.8.1"; sha256="14rh8f936p8fadlinn0n9d3l7q60bp3a1mgqag9m4q310477lf36"; depends=[]; }; + vortexR = derive2 { name="vortexR"; version="1.0.3"; sha256="1lwl61jfsf2kwmi30zwy9anc755jarji1q7qzzj4nb5jmdc395dy"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; }; + vortexRdata = derive2 { name="vortexRdata"; version="1.0.3"; sha256="1pq910xaqk6d5amg8hj7xagb5wn2ahfrmqairf3vhwqx55lhjbg1"; depends=[]; }; vote = derive2 { name="vote"; version="1.0-0"; sha256="1fx5x5248s48n86gdclv8pjnllly89rw0l6d2is263qqndn9fsk9"; depends=[formattable knitr]; }; vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vowels = derive2 { name="vowels"; version="1.2-1"; sha256="0177xysb5y8jzpxn9wdygq2f74gys67g29cd12zw77vlq3c3kkbr"; depends=[]; }; @@ -10012,7 +10283,7 @@ in with self; { vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; - vtreat = derive2 { name="vtreat"; version="0.5.30"; sha256="1i61sv47y3g9hs9bkx9wcirapy30hs66013w5k7116wqsp0dy3b2"; depends=[]; }; + vtreat = derive2 { name="vtreat"; version="0.5.31"; sha256="08mpgcd8w2znxx86bzafh6abw7rnklkhaw9cgjch7s35ij42665i"; depends=[]; }; vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; @@ -10027,10 +10298,10 @@ in with self; { walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; wallace = derive2 { name="wallace"; version="0.6.3"; sha256="1kv1svckdgb8rl51qdrn3cc367gklr89fy2lw92992vmsimafxhd"; depends=[devtools dismo dplyr DT ENMeval leaflet magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyBS shinyjs shinythemes spocc spThin]; }; wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; }; - warbleR = derive2 { name="warbleR"; version="1.1.5"; sha256="1m6hvvf2xji3i3fs19zf54l16wgbi7hwmjxpwfyvh9w6lb6swlnz"; depends=[doParallel dtw fftw foreach jpeg maps pbapply RCurl rjson seewave tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.6"; sha256="0wld9jshr4qj0m3l75yjy5gz725jnxwzvwwamqmdjkby6wyz823i"; depends=[doParallel dtw fftw foreach jpeg maps monitoR pbapply pbmcapply RCurl rjson seewave tuneR]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; }; - water = derive2 { name="water"; version="0.5"; sha256="0g7h1xgij107l5n3551m3ql5m3hn79a7ajv6grk05xf507fy1bb3"; depends=[raster rgdal sp]; }; + water = derive2 { name="water"; version="0.6"; sha256="0f569lcr68dk383cacgagyhkbyfh9aqgnn9w4c2y5x9bj3awjvq9"; depends=[raster rgdal sp]; }; waterData = derive2 { name="waterData"; version="1.0.6"; sha256="1k1paifhngy97ik399dndm7m5hm6r935yipiapgpchzsvl5nwwva"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; }; waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; waterfalls = derive2 { name="waterfalls"; version="0.1.1"; sha256="0x3f6phlrismivbaf37vqnz30wvz8xzj33qwl2wyg6lijxbmg551"; depends=[ggplot2]; }; @@ -10049,8 +10320,8 @@ in with self; { weatherData = derive2 { name="weatherData"; version="0.4.1"; sha256="19ynb9w52ay15awaf4bqm9lj2w6pk70lyaipn46jrspwxqsvfhlc"; depends=[plyr]; }; weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; }; weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; }; - webchem = derive2 { name="webchem"; version="0.1.1.1"; sha256="10h01a4slxcc6hllwh4wfayr9wfyaxijs0v875ncm97zb58gwl7h"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; - webp = derive2 { name="webp"; version="0.2"; sha256="1nwb30wyff5jynn0ppmg5ybw6q2ha9smnk69fi182grm3znf85as"; depends=[]; }; + webchem = derive2 { name="webchem"; version="0.2"; sha256="0mxikd2ls0jcal9z0byan1l78965qq8jdyym9ydb4c56g1p2iyl8"; depends=[httr jsonlite RCurl rvest stringr xml2]; }; + webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; webshot = derive2 { name="webshot"; version="0.4.0"; sha256="0qh1669lkxvr98l8sj03pfn41k4kfsy9787df4rxgigfsx3vnj1h"; depends=[jsonlite magrittr]; }; webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; }; @@ -10060,7 +10331,7 @@ in with self; { weco = derive2 { name="weco"; version="1.0"; sha256="1akn85igd6k5cfj9hzn3g8a77qzhlzwyc2p4l6y8wigyncg7wyqi"; depends=[]; }; weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; }; weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; }; - weightr = derive2 { name="weightr"; version="1.0.0"; sha256="03f6zif3a9cnshkchi5ak7s6mcsdyrqcij80aamk8cgb4s4nhc2x"; depends=[]; }; + weightr = derive2 { name="weightr"; version="1.1.2"; sha256="13wy7ygx7khbmymg2r0rr6mrl4lbapf5bnnq1rq8izl38sjk7csx"; depends=[]; }; weights = derive2 { name="weights"; version="0.85"; sha256="0nsvgx2yn2ynrkqvvy3fxjsi6aw8w3zknm80fyjrih2zmxc7v61f"; depends=[gdata Hmisc mice]; }; weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; }; wellknown = derive2 { name="wellknown"; version="0.1.0"; sha256="0cin4xi1780hglmcfyjiynvh1lm90yryl1m6z1snpprfzsxx3mmg"; depends=[jsonlite magrittr]; }; @@ -10073,13 +10344,14 @@ in with self; { whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; }; whoami = derive2 { name="whoami"; version="1.1.1"; sha256="1njyjzp9jl5k0vys0ymnvx9vbfckscg4r8hgl1nq7a2q9b9cg06f"; depends=[httr jsonlite]; }; whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; }; - wicket = derive2 { name="wicket"; version="0.2.0"; sha256="0wyd72w1l84kxzfy0hhrzr6ipxgzh2gfwldlmv0h79r5icjk17z3"; depends=[BH Rcpp]; }; + wicket = derive2 { name="wicket"; version="0.3.0"; sha256="1n6ji4zx48japlfbqyz4hbk40vr58l8d3wjdagjvc2jqx36cn19k"; depends=[BH Rcpp]; }; widals = derive2 { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; }; widenet = derive2 { name="widenet"; version="0.1-2"; sha256="1nimm8szbg82vg00f5c7b3f3sk0gplssbl4ggasjnh7dl621vfny"; depends=[glmnet relaxnet]; }; widgetframe = derive2 { name="widgetframe"; version="0.1.0"; sha256="0v7mi7m97200dyq8n173gsyw16g75bdas12s38lvg0a09gcyn8z0"; depends=[htmltools htmlwidgets magrittr purrr]; }; wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; - wikilake = derive2 { name="wikilake"; version="0.1"; sha256="05fcdrv2splhxkr3xgp14mwn36z3sn5hjq4mjibkgh44x7av4rf8"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; + wikilake = derive2 { name="wikilake"; version="0.2"; sha256="0z03bn4d1pllhxbyaf4knn2p8in3a3b0m32g5lxhi2lhh4sasc5h"; depends=[maps rvest selectr sp stringi stringr WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.10"; sha256="10av87jlfn2lfx37bnhlpdnhg657md9jx3c3frc9a4mm4lhl7rbv"; depends=[hellno httr jsonlite rvest stringr xml2]; }; + wikitaxa = derive2 { name="wikitaxa"; version="0.1.0"; sha256="1m97bq80k8iy8vhrfjcgn5a50ihk72n936k282j3gn3pb6y0kn26"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; }; wildlifeDI = derive2 { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; }; wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; }; @@ -10093,8 +10365,8 @@ in with self; { wmtsa = derive2 { name="wmtsa"; version="2.0-2"; sha256="14znrylyazsj3d8nxgh3nvr94ifckan6gwy12b43zsyskzqp9zbg"; depends=[ifultools MASS splus2R]; }; wnominate = derive2 { name="wnominate"; version="1.2"; sha256="0kkdlhliihv45hc0fd25kairxd9r71hcx04ri9l0iy8cyhjs2n12"; depends=[pscl]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; - woeBinning = derive2 { name="woeBinning"; version="0.1.1"; sha256="00fmbz8vdvf712plm2ip0jfiq3wpj7f4l6wn3i0x0d7fggkfhm1r"; depends=[]; }; - word_alignment = derive2 { name="word.alignment"; version="1.0.4"; sha256="0riz61wib1dbm5zb087xd31vkmw73nz3g82gh59mp673ancfahpd"; depends=[data_table openxlsx quanteda]; }; + woeBinning = derive2 { name="woeBinning"; version="0.1.3"; sha256="1hkcnv5kzjw9fjmyg5nkaww7q5snkncipsyxmrb6m9ah3pgsl1a2"; depends=[]; }; + word_alignment = derive2 { name="word.alignment"; version="1.0.6"; sha256="02hhl8357ykbf04gr8gjb9vkhimmb3fbi5jxrwy8dr0qysnz1kzg"; depends=[data_table openxlsx quanteda]; }; wordbankr = derive2 { name="wordbankr"; version="0.2.0"; sha256="041d5v3gm7bihx85k7kxwlqgg6vs24wzs2h59zf3l3cs39mhrhs5"; depends=[assertthat dplyr magrittr RMySQL stringr tidyr]; }; wordcloud = derive2 { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; }; wordcloud2 = derive2 { name="wordcloud2"; version="0.2.0"; sha256="0ylsmijrym61s1vhvf8csimznd1yg497xa3yign4bgi5jx4k64ny"; depends=[base64enc htmlwidgets]; }; @@ -10109,18 +10381,17 @@ in with self; { wpp2015 = derive2 { name="wpp2015"; version="1.1-0"; sha256="01vsdma2fgh0vd96ly4f704hl200v0w8ksz60gjxhm44ih3qszh3"; depends=[]; }; wppExplorer = derive2 { name="wppExplorer"; version="2.0-2"; sha256="0mja5bgw6b0dsxi3dpm87y9qbv5b9cgp81yfjkywqc5wdjpirxk7"; depends=[DT ggplot2 googleVis Hmisc plyr reshape2 shiny shinyjs shinythemes wpp2015]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; - wrangle = derive2 { name="wrangle"; version="0.3"; sha256="1xmb245ps02s43r0ysx87wqjdr174163x5cn4x1y226qbbdclmmk"; depends=[dplyr lazyeval magrittr tidyr]; }; - wrapr = derive2 { name="wrapr"; version="0.1.0"; sha256="1kssir24az6l39lp26g13gacmgarmhdgmc2vlpgfjv37x5lpxk3y"; depends=[]; }; + wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; }; + wrapr = derive2 { name="wrapr"; version="0.1.2"; sha256="1zlllcjrygzpr0k3ibmli98hhqr96sn89h72g2cwb5pbvgb7pzgk"; depends=[]; }; wrassp = derive2 { name="wrassp"; version="0.1.4"; sha256="0w1hzxwk00lk1hkdxxz6vqa6xzw5sf60y54xzfr510yd02x3r1gn"; depends=[]; }; write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; }; wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; }; wrspathrowData = derive2 { name="wrspathrowData"; version="1.0"; sha256="0a1aggcll0fmkwfg4h7rs4j5h3v1bh95dkbriwrb0bx0cikg63x3"; depends=[]; }; wrswoR = derive2 { name="wrswoR"; version="1.0-1"; sha256="1czw3g2j6as024wwvxiizvvxjmsxmxhz86jbw2lh95nh61znb7l8"; depends=[logging Rcpp]; }; wrswoR_benchmark = derive2 { name="wrswoR.benchmark"; version="0.1-1"; sha256="1a2ymyf1yww43i79hc912jpyqvbx44qn5bfnjwf4hq3mp707731j"; depends=[curl lazyeval]; }; - wru = derive2 { name="wru"; version="0.1-1"; sha256="103i3a741ik61jzp5zbhf0f6lfchlafq1gyjyy98jgw0cxc6ckcv"; depends=[devtools]; }; + wru = derive2 { name="wru"; version="0.1-3"; sha256="02l2dfz9v0ixr7x8rjrvdrcy4x3mxicchqr1jc298jc443dnsrsf"; depends=[devtools]; }; wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; }; - wsrf = derive2 { name="wsrf"; version="1.7.0"; sha256="1q4slnwn690z6ham0b2vy1rc0vkbrlj9bf0wkd6v86jag7wjr4fw"; depends=[Rcpp]; }; - wtcrsk = derive2 { name="wtcrsk"; version="1.6"; sha256="048gs469rdj85sid1gfj6yhh37w7zf9xv4fj8pd48c8ww3v7f61p"; depends=[]; }; + wsrf = derive2 { name="wsrf"; version="1.7.13"; sha256="07dmimn58byr5dyszckazxjs2gjjk6g3si9wa5f10gbgzpc0713p"; depends=[Rcpp]; }; wtest = derive2 { name="wtest"; version="1.0"; sha256="0rn2wp4xqd1b95asc1ppscfm21p3r85za778f88kgqax2lx7kq96"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; }; @@ -10131,13 +10402,15 @@ in with self; { xLLiM = derive2 { name="xLLiM"; version="1.0"; sha256="005y3xgfac047lga3dbckkz4ba781vd7dab867515yj18q5rllp7"; depends=[abind corpcor MASS Matrix]; }; xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; }; xaringan = derive2 { name="xaringan"; version="0.2"; sha256="0nlys4gakgj73826yvzk5yy38kj7h33a3970vwls8n06fc68xksn"; depends=[htmltools knitr rmarkdown servr]; }; - xergm = derive2 { name="xergm"; version="1.7.3"; sha256="0pr6qm8q039j9c9vibm7inb5qsvl4x54djckm7087zymvriyfmvl"; depends=[btergm GERGM rem tnam xergm_common]; }; - xergm_common = derive2 { name="xergm.common"; version="1.7.4"; sha256="1mrd5sa6bwv5lw6q0q9xj6zacs41522r69bm1ijd14gx5k1gwn7s"; depends=[ergm network]; }; + xbreed = derive2 { name="xbreed"; version="1.0.1"; sha256="0grrfra9j0k3mqikmrif5qawh4260ayr40irskzpp9ywsixim63h"; depends=[BGLR]; }; + xergm = derive2 { name="xergm"; version="1.8.2"; sha256="0rg8b0r27nzjnf0zkwfbkw96439h0b40k1l5lqi5igyr0bm7w0cc"; depends=[btergm GERGM rem tnam xergm_common]; }; + xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; }; xgboost = derive2 { name="xgboost"; version="0.6-4"; sha256="1vfiz44prcjx2y442zc4x1b50k57qwd7sqbz6lq0kiqhp78ivicz"; depends=[data_table magrittr Matrix stringi]; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; }; xkcd = derive2 { name="xkcd"; version="0.0.5"; sha256="1cq4n7w4adj24qq658z15jkqvrn4pd5abxpcsdkzb2cq98m69iis"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; + xlsimple = derive2 { name="xlsimple"; version="0.0.1"; sha256="1x0b2pb1sg2sqmh4z03bchsc9fhcphi6mxk4nbb6my2cr0kqrrdq"; depends=[]; }; xlsx = derive2 { name="xlsx"; version="0.5.7"; sha256="0qxkdpf1dvi0x7fy65abjx2j60rdx7fv5yi8l2wdm0f2631pnwin"; depends=[rJava xlsxjars]; }; xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; }; xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; @@ -10153,15 +10426,15 @@ in with self; { xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtractomatic = derive2 { name="xtractomatic"; version="3.2.0"; sha256="04gng8y7606fvyj767f9vja33fh0xcwj2v2jy3nacybjwwr9yrx0"; depends=[httr ncdf4 sp]; }; xts = derive2 { name="xts"; version="0.9-7"; sha256="163hzcnxrdb4lbsnwwv7qa00h4qlg4jm289acgvbg4jbiywpq7zi"; depends=[zoo]; }; - xxIRT = derive2 { name="xxIRT"; version="2.0.0"; sha256="140dp3chsd9mlnbysachck3547zgcpsbrgqhnrdxp348pny0l94b"; depends=[ggplot2 lpSolveAPI reshape2 shiny]; }; + xxIRT = derive2 { name="xxIRT"; version="2.0.1"; sha256="1a31jyzc37bq3068vq18rdj0fn66jihk7d1qmqk8lq76gg72dwk6"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; xyloplot = derive2 { name="xyloplot"; version="1.5"; sha256="0h90070m3xgcfky5q6vx6l2lfz0ihwbp2xg25mgmbijz4kg3n9d3"; depends=[]; }; - xyz = derive2 { name="xyz"; version="0.1"; sha256="0hynmrbi1f0ijv2g0va8bnr84ls2d8prl32f76mmfq6a3laqrj9i"; depends=[Rcpp]; }; + xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; yCrypticRNAs = derive2 { name="yCrypticRNAs"; version="0.99.2"; sha256="130zp8na3d50b49bcsqzsmjy2sif865h6vfpc5zmp1fhvkyykkfd"; depends=[biomaRt data_table IRanges mclust MESS Rcpp Rsamtools]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-26"; sha256="00w127wnwnhkfkrn4764l1ap3d3njlidglk9izcxm0n4kqj0zb49"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; yaml = derive2 { name="yaml"; version="2.1.14"; sha256="0x88xicrf7vwp77xgan27mnpdljhpkn0pz5kphnwqi3ddy25k9a1"; depends=[]; }; - yarrr = derive2 { name="yarrr"; version="0.1.4"; sha256="171z69jgva1afzmcjk62g9mr18z9r955rizvsp46bcljj74vfq39"; depends=[BayesFactor jpeg]; }; + yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; }; yesno = derive2 { name="yesno"; version="0.0.2"; sha256="0aa8kqcqlix9a9a2l4fnl2qv25dgdn4m7cfsh7m0kk76y8q5gbc9"; depends=[]; }; yhat = derive2 { name="yhat"; version="2.0-0"; sha256="0vdhkknmms7zy7iha894jn1hr1h5w67pr53r0q67m7p404w21iza"; depends=[boot miscTools plotrix yacca]; }; @@ -10178,13 +10451,14 @@ in with self; { zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="0.0-1"; sha256="0agm81rrn4ip6sljrwm1a9i2q9rwdwamnxm0smz757kypgyll8c2"; depends=[graph MASS PairViz]; }; zetadiv = derive2 { name="zetadiv"; version="1.0"; sha256="1r33v97viqq6r3afszclq45rcm4sfxy86lk13ljr6bxns47xpfii"; depends=[car glm2 Imap mgcv nnls scam vegan]; }; + zfa = derive2 { name="zfa"; version="1.0"; sha256="0lddwpifkzggzvy56ans5pfknfr8laxcg264f3ph2z150gw1plsh"; depends=[SKAT]; }; zic = derive2 { name="zic"; version="0.9"; sha256="0i39983blc46vjbb4y36rypg9q3zammxahk63p089m43gi22ycxh"; depends=[coda Rcpp RcppArmadillo]; }; zipcode = derive2 { name="zipcode"; version="1.0"; sha256="1lvlf1h5fv412idpdssjfh4fki933dm5nhr41ppl1mf45b9j7azn"; depends=[]; }; zipfR = derive2 { name="zipfR"; version="0.6-6"; sha256="1y3nqfjg5m89mdvcmqwjmwlc8p3hpcqnwv4ji1a7ggg4n63lwl3j"; depends=[]; }; - ziphsmm = derive2 { name="ziphsmm"; version="1.0.3"; sha256="0x7l4sgbixlz6x28gm3sk7x65n3p8jcm5ck3i10vy49f1fsvkf80"; depends=[Rcpp RcppArmadillo]; }; - zoeppritz = derive2 { name="zoeppritz"; version="1.0-5"; sha256="0a501411gjs02vvhxdy8z3a5449arkamdidf2q6qswkkiv68qq04"; depends=[]; }; + ziphsmm = derive2 { name="ziphsmm"; version="1.0.4"; sha256="119myqb9gzwg88k7csmsaqasn5zqjjp6x1x0wy2jra656l76g4kd"; depends=[Rcpp RcppArmadillo]; }; + zoeppritz = derive2 { name="zoeppritz"; version="1.0-6"; sha256="0b16w8s26pi5h911jizwqapgwhdh60gcx0khn3kayf9fi40kyzp0"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.4.2"; sha256="0gdbcnxlm9m88c2av4zy0k3yvm2cvg24804xnsi0mwfgwmnngdh5"; depends=[abind coda Formula matrixcalc rjags]; }; - zoo = derive2 { name="zoo"; version="1.7-14"; sha256="167m142rwwfy8b9hnfc3fi28dcsdjk61g1crqhll6sh5xmgnfn28"; depends=[lattice]; }; + zoo = derive2 { name="zoo"; version="1.8-0"; sha256="0mqklbx92ifwa0awm7gpm4r9dvwa09p55zjxjnypiqsxy532r4h9"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zoocat = derive2 { name="zoocat"; version="0.2.0"; sha256="1xqi90jnpqjdf3zr4pldh1a2gjppjwjrgkq71rvdhmcrf5s8jav0"; depends=[plyr reshape2 scales zoo]; }; zooimage = derive2 { name="zooimage"; version="3.0-5"; sha256="1r3slmyw0dyqfa40dr5xga814z09ibhmmby8p1cii5lh61xm4c39"; depends=[filehash jpeg mlearning png svDialogs svMisc]; }; diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index b3611d14e4b..5c0ed284e4a 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -409,7 +409,6 @@ let Cairo = [ pkgs.pkgconfig ]; Rsymphony = [ pkgs.pkgconfig pkgs.doxygen pkgs.graphviz pkgs.subversion ]; qtutils = [ pkgs.qt4 ]; - ecoretriever = [ pkgs.which ]; tcltk2 = [ pkgs.tcl pkgs.tk ]; tikzDevice = [ pkgs.which pkgs.texlive.combined.scheme-medium ]; rPython = [ pkgs.which ]; @@ -630,7 +629,6 @@ let "rioja" "ripa" "rite" - "rnbn" "RNCEP" "RQDA" "RSDA" @@ -662,7 +660,6 @@ let "SYNCSA" "SyNet" "tcltk2" - "TDMR" "TED" "TestScorer" "TIMP" @@ -695,24 +692,29 @@ let # Packages which cannot be installed due to lack of dependencies or other reasons. brokenPackages = [ "acs" # build is broken - "AffyTiling" # build is broken "agRee" # depends on broken package BRugs-0.8-6 "aLFQ" # depends on broken package bio3d-2.3-1 + "anamiR" # depends on broken package RMySQL-0.10.11 + "AneuFinder" # depends on broken package Rhtslib-1.6.0 "animation" # build is broken "anim_plots" # depends on broken package animation-2.4 "annmap" # depends on broken package RMySQL-0.10.9 "apaStyle" # depends on broken package gdtools-0.1.3 "apaTables" # depends on broken package OpenMx-2.7.4 + "aptg" # depends on broken package brranching-0.2.0 "ArrayExpressHTS" # build is broken "arrayQualityMetrics" # build is broken "auRoc" # depends on broken package OpenMx-2.7.4 + "bamsignals" # depends on broken package Rhtslib-1.6.0 "BatchQC" # build is broken + "bayesCL" # build is broken "bayou" # depends on broken package animation-2.4 "bedr" # build is broken "BETS" # build is broken "BiGGR" # depends on broken package rsbml-2.30.0 "bio3d" # build is broken "bioassayR" # depends on broken package ChemmineR-2.24.2 + "bioCancer" # depends on broken package covr-2.2.2 "biomformat" # depends on broken package r-rhdf5-2.16.0 "biotools" # depends on broken package rpanel-1.1-3 "birte" # build is broken @@ -734,6 +736,8 @@ let "categoryCompare" # depends on broken package RCytoscape-1.21.1 "Causata" # depends on broken package RMySQL-0.10.9 "cdcfluview" # depends on broken package V8-1.2 + "CexoR" # depends on broken package Rhtslib-1.6.0 + "ChAMP" # depends on broken package goseq-1.26.0 "ChemmineDrugs" # depends on broken package ChemmineR-2.24.2 "ChemmineR" # build is broken "chinese_misc" # build is broken @@ -762,13 +766,14 @@ let "csaw" # build is broken "ctsem" # depends on broken package OpenMx-2.7.4 "cudaBayesreg" # build is broken - "curlconverter" # depends on broken package V8-1.2 "cytofkit" # depends on broken package flowCore-1.38.2 + "CytoML" # depends on broken package flowCore-1.40.6 "daff" # depends on broken package V8-1.2 "dagbag" # build is broken "dagitty" # depends on broken package V8-1.2 "dagLogo" # depends on broken package MotIV-1.28.0 "DAISIE" # depends on broken package animation-2.4 + "DataEntry" # build is broken "dataMaid" # build is broken "dataone" # build is broken "datapack" # build is broken @@ -777,7 +782,9 @@ let "DCM" # build is broken "DDD" # depends on broken package animation-2.4 "deBInfer" # depends on broken package PBSddesolve-1.12.2 + "debrowser" # depends on broken package V8-1.4 "DecisionCurve" # build is broken + "DeepBlueR" # build is broken "deepSNV" # build is broken "DEGraph" # depends on broken package RCytoscape-1.21.1 "DEploid" # build is broken @@ -787,7 +794,6 @@ let "DirichletMultinomial" # build is broken "diveRsity" # build is broken "DmelSGI" # depends on broken package r-rhdf5-2.16.0 - "DNAprofiles" # build is broken "docxtools" # build is broken "DOQTL" # depends on broken package r-rhdf5-2.16.0 "DOT" # depends on broken package V8-1.2 @@ -801,11 +807,14 @@ let "euroMix" # build is broken "evobiR" # depends on broken package animation-2.4 "exifr" # build is broken + "ExperimentHubData" # build is broken "exprso" # build is broken "fastR" # build is broken + "fCCAC" # depends on broken package Rhtslib-1.6.0 "fdq" # depends on broken package gdtools-0.1.3 "Fgmutils" # depends on broken package gdtools-0.1.3 "flan" # build is broken + "flextable" # depends on broken package gdtools-0.1.4 "flowAI" # depends on broken package r-flowCore-1.38.2 "flowBeads" # depends on broken package r-flowCore-1.38.2 "flowBin" # depends on broken package r-flowCore-1.38.2 @@ -822,6 +831,7 @@ let "flowMeans" # depends on broken package r-flowCore-1.38.2 "flowMerge" # depends on broken package r-flowCore-1.38.2 "flowPeaks" # build is broken + "flowPloidy" # depends on broken package flowCore-1.40.6 "flowQB" # depends on broken package r-flowCore-1.38.2 "flowQ" # depends on broken package flowCore-1.38.2 "FlowSOM" # depends on broken package r-flowCore-1.38.2 @@ -848,6 +858,8 @@ let "gazepath" # build is broken "gdtools" # build is broken "GENE_E" # depends on broken package r-rhdf5-2.16.0 + "GenoGAM" # build is broken + "genomation" # depends on broken package Rhtslib-1.6.0 "geojson" # depends on broken package r-protolite-1.5 "geojsonio" # depends on broken package V8-1.2 "geojsonlint" # depends on broken package V8-1.2 @@ -855,19 +867,22 @@ let "gfer" # depends on broken package V8-1.2 "ggcyto" # depends on broken package r-flowCore-1.38.2 "ggghost" # depends on broken package animation-2.4 + "ggimage" # depends on broken package gridGraphics-0.1-5 "ggiraph" # depends on broken package gdtools-0.1.3 "ggiraphExtra" # depends on broken package gdtools-0.1.3 "ggseas" # build is broken + "gmapR" # build is broken "gmatrix" # depends on broken package cudatoolkit-8.0.61 "gMCP" # build is broken "gmDatabase" # depends on broken package RMySQL-0.10.9 "gmum_r" # build is broken - "goldi" # build is broken "googleformr" # build is broken + "goseq" # build is broken "gpg" # build is broken "gpuR" # build is broken "gputools" # depends on broken package cudatoolkit-8.0.61 "GraphPAC" # build is broken + "greengenes13_5MgDb" # build is broken "gridGraphics" # build is broken "GSCA" # depends on broken package r-rhdf5-2.16.0 "GUIDE" # depends on broken package rpanel-1.1-3 @@ -877,11 +892,14 @@ let "harrietr" # build is broken "HDF5Array" # depends on broken package r-rhdf5-2.16.0 "healthyFlowData" # depends on broken package r-flowCore-1.38.2 + "hexSticker" # depends on broken package gridGraphics-0.1-5 "HierO" # build is broken "HilbertVisGUI" # build is broken "HiPLARM" # build is broken "hisse" # depends on broken package animation-2.4 + "hoardeR" # depends on broken package Rhtslib-1.6.0 "homomorpheR" # depends on broken package sodium-0.4 + "HTSeqGenie" # depends on broken package gmapR-1.16.0 "HTSSIP" # depends on broken package r-rhdf5-2.16.0 "idm" # depends on broken package animation-2.4 "ifaTools" # depends on broken package OpenMx-2.7.4 @@ -889,7 +907,7 @@ let "IHWpaper" # depends on broken package r-lpsymphony-1.0.2 "IlluminaHumanMethylation450k_db" # build is broken "immunoClust" # depends on broken package r-flowCore-1.38.2 - "inSilicoMerging" # build is broken + "imputeR" # depends on broken package ridge-2.2 "intansv" # build is broken "interactiveDisplay" # build is broken "ionicons" # depends on broken package rsvg-1.0 @@ -902,8 +920,10 @@ let "KoNLP" # build is broken "largeList" # build is broken "largeVis" # build is broken + "lavaan_shiny" # depends on broken package OpenMx-2.7.10 "lawn" # depends on broken package V8-1.2 "LCMCR" # build is broken + "LeArEst" # depends on broken package opencpu-1.6.1 "lefse" # build is broken "lfe" # build is broken "lgcp" # depends on broken package rpanel-1.1-3 @@ -926,6 +946,7 @@ let "MBESS" # depends on broken package OpenMx-2.7.4 "mBvs" # build is broken "mcaGUI" # build is broken + "mcPAFit" # build is broken "mdsr" # depends on broken package RMySQL-0.10.9 "Mediana" # depends on broken package gdtools-0.1.3 "melviewr" # build is broken @@ -936,13 +957,14 @@ let "metagear" # build is broken "MetaIntegrator" # depends on broken package RMySQL-0.10.9 "metaSEM" # depends on broken package OpenMx-2.7.4 + "methylKit" # depends on broken package Rhtslib-1.6.0 "MigClim" # build is broken "minimist" # depends on broken package V8-1.2 "miscF" # depends on broken package BRugs-0.8-6 "mixlink" # build is broken "MLSeq" # build is broken - "MMDiff" # depends on broken package r-DiffBind-2.0.9 "mmnet" # build is broken + "MODIStsp" # build is broken "MonetDBLite" # build is broken "mongolite" # build is broken "monogeneaGM" # depends on broken package animation-2.4 @@ -969,7 +991,9 @@ let "ndjson" # build is broken "ndtv" # depends on broken package animation-2.4 "NetRep" # depends on broken package r-RhpcBLASctl-0.15-148 + "networkBMA" # build is broken "nlts" # build is broken + "normr" # depends on broken package Rhtslib-1.6.0 "NORRRM" # build is broken "odbc" # build is broken "officer" # depends on broken package gdtools-0.1.3 @@ -979,10 +1003,12 @@ let "OpenMx" # build is broken "optbdmaeAT" # build is broken "optBiomarker" # depends on broken package rpanel-1.1-3 + "optrcdmaeAT" # build is broken "ora" # depends on broken package ROracle-1.3-1 "OUwie" # depends on broken package animation-2.4 "PAA" # build is broken "paleotree" # depends on broken package animation-2.4 + "PathoStat" # depends on broken package BatchQC-1.2.1 "PathSelectMP" # build is broken "PatternClass" # build is broken "PBD" # depends on broken package animation-2.4 @@ -999,6 +1025,7 @@ let "PGA" # build is broken "PGPC" # depends on broken package ChemmineR-2.24.2 "ph2bye" # depends on broken package animation-2.4 + "PharmacoGx" # build is broken "PhyInformR" # depends on broken package animation-2.4 "phylocurve" # depends on broken package animation-2.4 "phyloseq" # depends on broken package r-rhdf5-2.16.0 @@ -1008,6 +1035,7 @@ let "PING" # depends on broken package PICS-2.16.0 "plateCore" # depends on broken package r-flowCore-1.38.2 "plfMA" # build is broken + "plink" # build is broken "podkat" # build is broken "PottsUtils" # depends on broken package BRugs-0.8-6 "powell" # build is broken @@ -1043,11 +1071,12 @@ let "RapidPolygonLookup" # depends on broken package PBSmapping-2.69.76 "RAppArmor" # build is broken "raptr" # depends on broken package PBSmapping-2.69.76 - "RBerkeley" # build is broken "RbioRXN" # depends on broken package ChemmineR-2.24.2 "Rblpapi" # build is broken + "RCAS" # depends on broken package Rhtslib-1.6.0 "Rchemcpp" # depends on broken package ChemmineR-2.24.2 "rchess" # depends on broken package V8-1.2 + "RchivalTag" # depends on broken package PBSmapping-2.69.76 "RchyOptimyx" # depends on broken package r-flowCore-1.38.2 "RcmdrPlugin_FuzzyClust" # build is broken "RcmdrPlugin_PcaRobust" # build is broken @@ -1060,6 +1089,7 @@ let "rcqp" # build is broken "rcrypt" # build is broken "RCytoscape" # build is broken + "rdataretriever" # build is broken "rDEA" # build is broken "RDieHarder" # build is broken "REBayes" # depends on broken package Rmosek-1.2.5.1 @@ -1075,8 +1105,10 @@ let "Rgnuplot" # build is broken "rgp" # build is broken "rgpui" # depends on broken package rgp-0.4-1 + "rgsepd" # depends on broken package goseq-1.26.0 "rhdf5" # build is broken "RhpcBLASctl" # build is broken + "Rhtslib" # build is broken "ridge" # build is broken "rjade" # depends on broken package V8-1.2 "rJPSGCS" # build is broken @@ -1089,12 +1121,14 @@ let "rmapshaper" # depends on broken package V8-1.2 "rMAT" # build is broken "Rmosek" # build is broken + "rmumps" # build is broken "RMySQL" # build is broken + "rnaturalearth" # depends on broken package sf-0.4-1 "RnavGraph" # build is broken "rnetcarto" # build is broken + "ROI_plugin_clp" # depends on broken package clpAPI-1.2.7 "ROI_plugin_cplex" # depends on broken package Rcplex-0.3-3 "ROI_plugin_symphony" # depends on broken package Rsymphony-0.1-26 - "Rolexa" # build is broken "ROracle" # build is broken "RPA" # depends on broken package r-rhdf5-2.16.0 "RPANDA" # depends on broken package animation-2.4 @@ -1103,6 +1137,7 @@ let "Rphylopars" # depends on broken package animation-2.4 "Rpoppler" # build is broken "RQuantLib" # build is broken + "Rsampletrees" # build is broken "RSAP" # build is broken "rsbml" # build is broken "RSCABS" # build is broken @@ -1119,9 +1154,9 @@ let "RVideoPoker" # depends on broken package rpanel-1.1-3 "rzmq" # build is broken "s2" # build is broken - "Sabermetrics" # build is broken "sapFinder" # build is broken "sbrl" # build is broken + "SC3" # depends on broken package scater-1.2.0 "scater" # depends on broken package r-rhdf5-2.16.0 "scran" # depends on broken package r-rhdf5-2.16.0 "SDD" # depends on broken package rpanel-1.1-3 @@ -1129,6 +1164,7 @@ let "seasonalview" # build is broken "Sejong" # build is broken "SemiCompRisks" # build is broken + "semPlot" # depends on broken package OpenMx-2.7.10 "semtree" # depends on broken package OpenMx-2.7.4 "seqbias" # build is broken "SeqGrapheR" # build is broken @@ -1141,11 +1177,11 @@ let "SimInf" # build is broken "simsalapar" # build is broken "smapr" # depends on broken package r-rhdf5-2.16.0 + "SMITE" # depends on broken package goseq-1.26.0 "SnakeCharmR" # build is broken "sodium" # build is broken "soilphysics" # depends on broken package rpanel-1.1-3 "sortinghat" # build is broken - "spade" # depends on broken package r-flowCore-1.38.2 "spdynmod" # depends on broken package animation-2.4 "spocc" # depends on broken package V8-1.2 "spongecake" # build is broken @@ -1159,20 +1195,24 @@ let "subspaceMOA" # depends on broken package animation-2.4 "svglite" # depends on broken package gdtools-0.1.3 "sybilSBML" # build is broken + "SymTS" # build is broken "synthACS" # depends on broken package acs-2.0 "tcpl" # depends on broken package RMySQL-0.10.9 "TDA" # build is broken "TED" # depends on broken package animation-2.4 "tesseract" # build is broken + "texPreview" # depends on broken package magick-0.4 "textreadr" # build is broken "textTinyR" # build is broken "TFBSTools" # depends on broken package CNEr-1.8.3 + "tilegramsR" # depends on broken package sf-0.4-1 "TKF" # depends on broken package animation-2.4 "tmap" # depends on broken package V8-1.2 "tmaptools" # depends on broken package V8-1.2 "tofsims" # build is broken "toxboot" # depends on broken package RMySQL-0.10.9 "TransView" # build is broken + "treatSens" # build is broken "treeplyr" # depends on broken package animation-2.4 "TSMySQL" # depends on broken package RMySQL-0.10.9 "uaparserjs" # depends on broken package V8-1.2 @@ -1181,12 +1221,14 @@ let "umx" # depends on broken package OpenMx-2.7.4 "userfriendlyscience" # depends on broken package OpenMx-2.7.4 "V8" # build is broken + "VariantTools" # depends on broken package gmapR-1.16.0 "VBmix" # build is broken "vcfR" # build is broken "vdiffr" # depends on broken package gdtools-0.1.3 "vmsbase" # depends on broken package PBSmapping-2.69.76 "wallace" # depends on broken package V8-1.2 "wand" # build is broken + "WebGestaltR" # depends on broken package PythonInR-0.1-3 "webp" # build is broken "wordbankr" # depends on broken package RMySQL-0.10.9 "x13binary" # build is broken diff --git a/pkgs/development/r-modules/generate-shell.nix b/pkgs/development/r-modules/generate-shell.nix index 126ab742292..beb37827508 100644 --- a/pkgs/development/r-modules/generate-shell.nix +++ b/pkgs/development/r-modules/generate-shell.nix @@ -6,7 +6,8 @@ stdenv.mkDerivation { buildCommand = "exit 1"; buildInputs = [ wget ]; - nativeBuildInputs = [ + + nativeBuildInputs = [ (rWrapper.override { packages = with rPackages; [ data_table diff --git a/pkgs/development/r-modules/wrapper-rstudio.nix b/pkgs/development/r-modules/wrapper-rstudio.nix new file mode 100644 index 00000000000..dd9b0e9c538 --- /dev/null +++ b/pkgs/development/r-modules/wrapper-rstudio.nix @@ -0,0 +1,33 @@ +{ stdenv, R, rstudio, makeWrapper, recommendedPackages, packages }: + +stdenv.mkDerivation rec { + + name = rstudio.name + "-wrapper"; + + buildInputs = [makeWrapper R rstudio] ++ recommendedPackages ++ packages; + + unpackPhase = ":"; + + # rWrapper points R to a specific set of packages by using a wrapper + # (as in https://nixos.org/nixpkgs/manual/#r-packages) which sets + # R_LIBS_SITE. Ordinarily, it would be possible to make RStudio use + # this same set of packages by simply overriding its version of R + # with the wrapped one, however, RStudio internally overrides + # R_LIBS_SITE. The below works around this by turning R_LIBS_SITE + # into an R file (fixLibsR) which achieves the same effect, then + # uses R_PROFILE_USER to load this code at startup in RStudio. + fixLibsR = "fix_libs.R"; + installPhase = '' + mkdir $out + echo "# Autogenerated by wrapper-rstudio.nix from R_LIBS_SITE" > $out/${fixLibsR} + echo -n ".libPaths(c(.libPaths(), \"" >> $out/${fixLibsR} + echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/${fixLibsR} + echo -n "\"))" >> $out/${fixLibsR} + echo >> $out/${fixLibsR} + makeWrapper ${rstudio}/bin/rstudio $out/bin/rstudio --set R_PROFILE_USER $out/${fixLibsR} + ''; + + meta = { + platforms = stdenv.lib.platforms.unix; + }; +} diff --git a/pkgs/development/r-modules/wrapper.nix b/pkgs/development/r-modules/wrapper.nix index 25c76506027..3b9a9b18450 100644 --- a/pkgs/development/r-modules/wrapper.nix +++ b/pkgs/development/r-modules/wrapper.nix @@ -1,19 +1,12 @@ { stdenv, R, makeWrapper, recommendedPackages, packages }: -stdenv.mkDerivation rec { +stdenv.mkDerivation { name = R.name + "-wrapper"; buildInputs = [makeWrapper R] ++ recommendedPackages ++ packages; unpackPhase = ":"; - # This filename is used in 'installPhase', but needs to be - # referenced elsewhere. This will be relative to this package's - # path. - passthru = { - fixLibsR = "fix_libs.R"; - }; - installPhase = '' mkdir -p $out/bin cd ${R}/bin @@ -21,17 +14,6 @@ stdenv.mkDerivation rec { makeWrapper ${R}/bin/$exe $out/bin/$exe \ --prefix "R_LIBS_SITE" ":" "$R_LIBS_SITE" done - # RStudio (and perhaps other packages) overrides the R_LIBS_SITE - # which the wrapper above applies, and as a result packages - # installed in the wrapper (as in the method described in - # https://nixos.org/nixpkgs/manual/#r-packages) aren't visible. - # The below turns R_LIBS_SITE into some R startup code which can - # correct this. - echo "# Autogenerated by wrapper.nix from R_LIBS_SITE" > $out/${passthru.fixLibsR} - echo -n ".libPaths(c(.libPaths(), \"" >> $out/${passthru.fixLibsR} - echo -n $R_LIBS_SITE | sed -e 's/:/", "/g' >> $out/${passthru.fixLibsR} - echo -n "\"))" >> $out/${passthru.fixLibsR} - echo >> $out/${passthru.fixLibsR} ''; meta = { diff --git a/pkgs/development/ruby-modules/bundix/default.nix b/pkgs/development/ruby-modules/bundix/default.nix index 378f148ca6a..42d6ee04b59 100644 --- a/pkgs/development/ruby-modules/bundix/default.nix +++ b/pkgs/development/ruby-modules/bundix/default.nix @@ -5,9 +5,9 @@ buildRubyGem rec { name = "${gemName}-${version}"; gemName = "bundix"; - version = "2.0.8"; + version = "2.1.0"; - sha256 = "0ikpf2g01izadjpdnc4k2rb9v4g11f1jk2y5alxc7n7rxjkwdc66"; + sha256 = "5a073c59dfc7e2367c47e6513fc8914d27e11c08f82bc1103c4793dfb2837bef"; buildInputs = [bundler]; diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index e115b2c679d..987d61f2e33 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -21,11 +21,20 @@ , libiconv, postgresql, v8_3_16_14, clang, sqlite, zlib, imagemagick , pkgconfig , ncurses, xapian_1_2_22, gpgme, utillinux, fetchpatch, tzdata, icu, libffi , cmake, libssh2, openssl, mysql, darwin, git, perl, gecode_3, curl -, libmsgpack, qt48, libsodium, snappy, libossp_uuid, lxc +, libmsgpack, qt48, libsodium, snappy, libossp_uuid, lxc, libpcap, buildRubyGem }@args: let v8 = v8_3_16_14; + + rainbow_rake = buildRubyGem { + name = "rake"; + gemName = "rake"; + remotes = ["https://rubygems.org"]; + sha256 = "01j8fc9bqjnrsxbppncai05h43315vmz9fwg28qdsgcjw9ck1d7n"; + type = "gem"; + version = "12.0.0"; + }; in { @@ -78,6 +87,18 @@ in [ darwin.apple_sdk.frameworks.CoreServices ]; }; + # disable bundle install as it can't install anything in addition to what is + # specified in pkgs/applications/misc/jekyll/Gemfile anyway. Also do chmod_R + # to compensate for read-only files in site_template in nix store. + jekyll = attrs: { + postInstall = '' + installPath=$(cat $out/nix-support/gem-meta/install-path) + sed -i $installPath/lib/jekyll/commands/new.rb \ + -e 's@Exec.run("bundle", "install"@Exec.run("true"@' \ + -e 's@FileUtils.cp_r site_template + "/.", path@FileUtils.cp_r site_template + "/.", path; FileUtils.chmod_R "u+w", path@' + ''; + }; + # note that you need version >= v3.16.14.8, # otherwise the gem will fail to link to the libv8 binary. # see: https://github.com/cowboyd/libv8/pull/161 @@ -123,6 +144,10 @@ in buildInputs = [ curl ]; }; + pcaprub = attrs: { + buildInputs = [ libpcap ]; + }; + pg = attrs: { buildFlags = [ "--with-pg-config=${postgresql}/bin/pg_config" @@ -133,6 +158,10 @@ in buildInputs = [ openssl ]; }; + rainbow = attrs: { + buildInputs = [ rainbow_rake ]; + }; + rbnacl = spec: { postInstall = '' sed -i $(cat $out/nix-support/gem-meta/install-path)/lib/rbnacl.rb -e "2a \ @@ -195,6 +224,14 @@ in ''; }; + rb-readline = attrs: { + dontBuild = false; + postPatch = '' + substituteInPlace lib/rbreadline.rb \ + --replace 'infocmp' '${ncurses.dev}/bin/infocmp' + ''; + }; + timfel-krb5-auth = attrs: { buildInputs = [ kerberos ]; }; diff --git a/pkgs/development/tools/activator/default.nix b/pkgs/development/tools/activator/default.nix deleted file mode 100644 index 394c60e0fdd..00000000000 --- a/pkgs/development/tools/activator/default.nix +++ /dev/null @@ -1,32 +0,0 @@ -{ stdenv, fetchurl, unzip, jre }: - -stdenv.mkDerivation rec { - - name = "${pname}-${version}"; - pname = "activator"; - version = "1.3.12"; - - src = fetchurl { - url = "http://downloads.typesafe.com/typesafe-${pname}/${version}/typesafe-${name}.zip"; - sha256 = "0c7mxznfgvywnyvr8l5jh4cp67ila5cdq14p6jwrkh6lwif3ah1p"; - }; - - buildInputs = [ unzip jre ]; - - installPhase = '' - mkdir -p $out/{bin,lib,libexec} - mv repository $out/lib - sed -i -e "s,declare.*activator_home.*=.*,declare -r activator_home=$out/lib/,g" bin/activator - mv bin/activator $out/bin - mv libexec/activator-launch-${version}.jar $out/libexec - ''; - - meta = with stdenv.lib; { - description = "A scafollding tool for setting up reactive projects"; - homepage = "http://typesafe.com/activator"; - license = licenses.asl20; - maintainers = with maintainers; [ edwtjo cko ]; - platforms = with platforms; unix; - }; - -} diff --git a/pkgs/development/tools/ammonite/default.nix b/pkgs/development/tools/ammonite/default.nix index 049ea51b8f9..69f6fb47cb9 100644 --- a/pkgs/development/tools/ammonite/default.nix +++ b/pkgs/development/tools/ammonite/default.nix @@ -1,12 +1,13 @@ { stdenv, lib, fetchurl, makeWrapper, jre }: stdenv.mkDerivation rec { - name = "ammonite-repl-${version}"; - version = "0.8.2"; + name = "ammonite-${version}"; + version = "0.8.5"; + scalaVersion = "2.12"; src = fetchurl { - url = "https://github.com/lihaoyi/Ammonite/releases/download/${version}/2.12-${version}"; - sha256 = "0fgwqdvk0nljd6xm16r8qdhjcp7ix4vx91w5ab856hllf4911120"; + url = "https://github.com/lihaoyi/Ammonite/releases/download/${version}/${scalaVersion}-${version}"; + sha256 = "1n06w18wnkawfwd3xf37zv2010d6crldzgb78dqcjk91i5rdlnsx"; }; propagatedBuildInputs = [ jre ] ; diff --git a/pkgs/development/tools/backblaze-b2/default.nix b/pkgs/development/tools/backblaze-b2/default.nix index 045272e19d3..94960e1b74d 100644 --- a/pkgs/development/tools/backblaze-b2/default.nix +++ b/pkgs/development/tools/backblaze-b2/default.nix @@ -11,7 +11,7 @@ pythonPackages.buildPythonApplication rec { sha256 = "1gl1z7zg3s1xgx45i6b1bvx9iwviiiinl4my00h66qkhrw7ag8p1"; }; - propagatedBuildInputs = with pythonPackages; [ futures requests2 six tqdm4 ]; + propagatedBuildInputs = with pythonPackages; [ futures requests six tqdm ]; checkPhase = '' python test_b2_command_line.py test diff --git a/pkgs/development/tools/boomerang/default.nix b/pkgs/development/tools/boomerang/default.nix index cfd8c03af6d..1e84a05cc85 100644 --- a/pkgs/development/tools/boomerang/default.nix +++ b/pkgs/development/tools/boomerang/default.nix @@ -1,43 +1,31 @@ -{ stdenv, fetchgit, cmake, expat }: +{ stdenv, fetchgit, cmake, expat, qt5, boost }: stdenv.mkDerivation rec { name = "boomerang-${version}"; - version = "0.3.2alpha"; + version = "0.3.99-alpha-2016-11-02"; src = fetchgit { url = "https://github.com/nemerle/boomerang.git"; - rev = "78c6b9dd33790be43dcb07edc549161398904006"; - sha256 = "1n49wx2v9r40mh5kdkspqvc8rccpb4s004qxqvn4fwc59dm0pqbs"; + rev = "f95d6436845e9036c8cfbd936731449475f79b7a"; + sha256 = "1q3q92lfj24ij5sxdbdhcqyan28r6db1w80yrks4csf9zjij1ixh"; }; - buildInputs = [ cmake expat ]; + buildInputs = [ cmake expat qt5.qtbase boost ]; + + patches = [ ./fix-install.patch ./fix-output.patch ]; postPatch = '' - sed -i -e 's/-std=c++0x/-std=c++11 -fpermissive/' CMakeLists.txt - - # Hardcode library base path ("lib/" is appended elsewhere) - sed -i -e 's|::m_base_path = "|&'"$out"'/|' loader/BinaryFileFactory.cpp - # Deactivate setting base path at runtime - sed -i -e 's/m_base_path *=[^}]*//' include/BinaryFile.h - - # Fix up shared directory locations - shared="$out/share/boomerang/" - find frontend -name '*.cpp' -print | xargs sed -i -e \ - 's|Boomerang::get()->getProgPath()|std::string("'"$shared"'")|' - - cat >> loader/CMakeLists.txt <<CMAKE - INSTALL(TARGETS bffDump BinaryFile - ElfBinaryFile Win32BinaryFile ExeBinaryFile HpSomBinaryFile - PalmBinaryFile DOS4GWBinaryFile MachOBinaryFile - RUNTIME DESTINATION bin - LIBRARY DESTINATION lib) - CMAKE - - cat >> CMakeLists.txt <<CMAKE - INSTALL(TARGETS boomerang DESTINATION bin) - INSTALL(DIRECTORY signatures DESTINATION share/boomerang) - INSTALL(DIRECTORY frontend/machine DESTINATION share/boomerang/frontend) - CMAKE + substituteInPlace loader/BinaryFileFactory.cpp \ + --replace '"lib"' '"../lib"' + + substituteInPlace ui/DecompilerThread.cpp \ + --replace '"output"' '"./output"' + + substituteInPlace boomerang.cpp \ + --replace 'progPath("./")' "progPath(\"$out/share/boomerang/\")" + + substituteInPlace ui/commandlinedriver.cpp \ + --replace "QFileInfo(args[0]).absolutePath()" "\"$out/share/boomerang/\"" ''; enableParallelBuilding = true; @@ -46,6 +34,5 @@ stdenv.mkDerivation rec { homepage = "http://boomerang.sourceforge.net/"; license = stdenv.lib.licenses.bsd3; description = "A general, open source, retargetable decompiler"; - broken = true; }; } diff --git a/pkgs/development/tools/boomerang/fix-install.patch b/pkgs/development/tools/boomerang/fix-install.patch new file mode 100644 index 00000000000..bc656acfd6a --- /dev/null +++ b/pkgs/development/tools/boomerang/fix-install.patch @@ -0,0 +1,48 @@ +From 5851256422a4debc34c956439d8129a4d5f80722 Mon Sep 17 00:00:00 2001 +From: Will Dietz <w@wdtz.org> +Date: Thu, 30 Mar 2017 10:06:03 -0500 +Subject: [PATCH] cmake: add install bits + +--- + CMakeLists.txt | 3 +++ + loader/CMakeLists.txt | 2 ++ + ui/CMakeLists.txt | 2 ++ + 3 files changed, 7 insertions(+) + +diff --git a/CMakeLists.txt b/CMakeLists.txt +index 826fe307..740861db 100644 +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -113,3 +113,6 @@ SET_PROPERTY(TARGET boom_base PROPERTY CXX_STANDARD_REQUIRED ON) + + ADD_SUBDIRECTORY(loader) + ADD_SUBDIRECTORY(ui) ++ ++INSTALL(DIRECTORY signatures DESTINATION share/boomerang) ++INSTALL(DIRECTORY frontend/machine DESTINATION share/boomerang/frontend) +diff --git a/loader/CMakeLists.txt b/loader/CMakeLists.txt +index b371d366..dcf715fd 100644 +--- a/loader/CMakeLists.txt ++++ b/loader/CMakeLists.txt +@@ -6,6 +6,8 @@ macro(BOOMERANG_ADD_LOADER name) + endif() + qt5_use_modules(${target_name} Core) + set_target_properties(${target_name} PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${PROJECT_SOURCE_DIR}/out/lib") ++ install(TARGETS "${target_name}" ++ LIBRARY DESTINATION lib) + endmacro() + + BOOMERANG_ADD_LOADER(Elf elf/ElfBinaryFile.cpp elf/ElfBinaryFile.h) +diff --git a/ui/CMakeLists.txt b/ui/CMakeLists.txt +index f6fe3271..8729b522 100644 +--- a/ui/CMakeLists.txt ++++ b/ui/CMakeLists.txt +@@ -26,3 +26,5 @@ boom_base frontend db type boomerang_DSLs codegen util boom_base + ${CMAKE_THREAD_LIBS_INIT} boomerang_passes + ) + qt5_use_modules(boomerang Core Xml Widgets) ++ ++INSTALL(TARGETS boomerang DESTINATION bin) +-- +2.11.0 + diff --git a/pkgs/development/tools/boomerang/fix-output.patch b/pkgs/development/tools/boomerang/fix-output.patch new file mode 100644 index 00000000000..18fbe74177b --- /dev/null +++ b/pkgs/development/tools/boomerang/fix-output.patch @@ -0,0 +1,24 @@ +From f3f5f888a1b1fe72ea8fc8cc96ef4ee386011e1c Mon Sep 17 00:00:00 2001 +From: Will Dietz <w@wdtz.org> +Date: Thu, 30 Mar 2017 11:21:38 -0500 +Subject: [PATCH] don't default to writing to program directory + +--- + boomerang.cpp | 1 - + 1 file changed, 1 deletion(-) + +diff --git a/boomerang.cpp b/boomerang.cpp +index 5951ed91..b592f482 100644 +--- a/boomerang.cpp ++++ b/boomerang.cpp +@@ -601,7 +601,6 @@ int Boomerang::processCommand(QStringList &args) { + */ + void Boomerang::setProgPath(const QString &p) { + progPath = p + "/"; +- outputPath = progPath + "/output/"; // Default output path (can be overridden with -o below) + } + + /** +-- +2.11.0 + diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix index 16e31eaf5a8..dcdc55f0aef 100644 --- a/pkgs/development/tools/build-managers/bazel/default.nix +++ b/pkgs/development/tools/build-managers/bazel/default.nix @@ -1,8 +1,8 @@ -{ stdenv, fetchurl, jdk, zip, unzip, bash, makeWrapper }: +{ stdenv, fetchurl, jdk, zip, unzip, bash, makeWrapper, which }: stdenv.mkDerivation rec { - version = "0.4.4"; + version = "0.4.5"; meta = with stdenv.lib; { homepage = http://github.com/bazelbuild/bazel/; @@ -16,7 +16,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://github.com/bazelbuild/bazel/releases/download/${version}/bazel-${version}-dist.zip"; - sha256 = "1fwfahkqi680zyxmdriqj603lpacyh6cg6ff25bn9bkilbfj2anm"; + sha256 = "0asmq3kxnl4326zhgh13mvcrc8jvmiswjj4ymrq0943q4vj7nwrb"; }; sourceRoot = "."; @@ -42,6 +42,7 @@ stdenv.mkDerivation rec { zip unzip makeWrapper + which ]; # These must be propagated since the dependency is hidden in a compressed @@ -58,6 +59,10 @@ stdenv.mkDerivation rec { buildPhase = '' export TMPDIR=/tmp ./compile.sh + ./output/bazel --output_user_root=/tmp/.bazel build //scripts:bash_completion \ + --spawn_strategy=standalone \ + --genrule_strategy=standalone + cp bazel-bin/scripts/bazel-complete.bash output/ ''; # Build the CPP and Java examples to verify that Bazel works. @@ -76,6 +81,9 @@ stdenv.mkDerivation rec { mkdir -p $out/bin mv output/bazel $out/bin wrapProgram "$out/bin/bazel" --prefix PATH : "${stdenv.cc}/bin:${jdk}/bin" + mkdir -p $out/share/bash-completion/completions $out/share/zsh/site-functions + mv output/bazel-complete.bash $out/share/bash-completion/completions/ + cp scripts/zsh_completion/_bazel $out/share/zsh/site-functions/ ''; dontStrip = true; diff --git a/pkgs/development/tools/build-managers/buildbot/default.nix b/pkgs/development/tools/build-managers/buildbot/default.nix index ed24e917a1c..64ab960c88b 100644 --- a/pkgs/development/tools/build-managers/buildbot/default.nix +++ b/pkgs/development/tools/build-managers/buildbot/default.nix @@ -5,17 +5,19 @@ let buildInputs = [ makeWrapper ] ++ plugins; passthru.withPlugins = moarPlugins: withPlugins (moarPlugins ++ plugins); } '' - makeWrapper ${package}/bin/buildbot $out/bin/buildbot --prefix PYTHONPATH : $PYTHONPATH + makeWrapper ${package}/bin/buildbot $out/bin/buildbot \ + --prefix PYTHONPATH : "${package}/lib/python2.7/site-packages:$PYTHONPATH" + ln -sfv ${package}/lib $out/lib ''; package = pythonPackages.buildPythonApplication (rec { name = "${pname}-${version}"; pname = "buildbot"; - version = "0.9.4"; + version = "0.9.7"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0wklrn4fszac9wi8zw3vbsznwyff6y57cz0i81zvh46skb6n3086"; + sha256 = "0cwy39ap2v9kni3zm92633cnqf7qsnb4zlargx060pbfagkg1jwg"; }; buildInputs = with pythonPackages; [ @@ -49,6 +51,7 @@ let txaio autobahn pyjwt + distro # tls pyopenssl @@ -66,6 +69,12 @@ let ]; + patches = [ + # This patch disables the test that tries to read /etc/os-release which + # is not accessible in sandboxed builds. + ./skip_test_linux_distro.patch + ]; + postPatch = '' substituteInPlace buildbot/scripts/logwatcher.py --replace '/usr/bin/tail' "$(type -P tail)" ''; diff --git a/pkgs/development/tools/build-managers/buildbot/plugins.nix b/pkgs/development/tools/build-managers/buildbot/plugins.nix index b22759af8fe..3c15e256a3f 100644 --- a/pkgs/development/tools/build-managers/buildbot/plugins.nix +++ b/pkgs/development/tools/build-managers/buildbot/plugins.nix @@ -1,14 +1,14 @@ -{ stdenv, fetchurl, pythonPackages }: +{ stdenv, pythonPackages }: let buildbot-pkg = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-pkg"; - version = "0.9.4"; + version = "0.9.7"; - src = fetchurl { - url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "09a3yvs5hhf8syrkyydznmymgg86dpvgrwy9rb3bryq00wpjb3wn"; + src = pythonPackages.fetchPypi { + inherit pname version; + sha256 = "0p351r10y42gwgxb2qg7xlsbhmnzdmqp6h4922l0yfii3pzmrdzv"; }; propagatedBuildInputs = with pythonPackages; [ setuptools ]; @@ -25,15 +25,14 @@ in { www = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot_www"; - version = "0.9.4"; + version = "0.9.7"; # NOTE: wheel is used due to buildbot circular dependency format = "wheel"; src = pythonPackages.fetchPypi { inherit pname version format; - python = "py2"; - sha256 = "08m4h2pf6hgi8igh2j0qzfq49izc2z0qqj6ddxk0di5l306jx4im"; + sha256 = "1wf2spnilm0dkyw95vf57lca453sbly4r6ak3lxa8bpwhxb6lkdn"; }; meta = with stdenv.lib; { @@ -47,11 +46,11 @@ in { console-view = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-console-view"; - version = "0.9.4"; + version = "0.9.7"; - src = fetchurl { - url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "1w2vv8iyzl7ak4161avp9n6mhh08adav2fl82bbm17a3064apl8n"; + src = pythonPackages.fetchPypi { + inherit pname version; + sha256 = "1iv77886rbbn0wlzl5qiqc08rgbymxirqh3vmimqwsabbh7fhzkm"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; @@ -67,11 +66,11 @@ in { waterfall-view = pythonPackages.buildPythonPackage rec { name = "${pname}-${version}"; pname = "buildbot-waterfall-view"; - version = "0.9.4"; + version = "0.9.7"; - src = fetchurl { - url = "mirror://pypi/b/${pname}/${name}.tar.gz"; - sha256 = "17xn6vrr0k2xabw6hr9sdyy0ry3llyjfmc79qrpgp5bsly2qv3jf"; + src = pythonPackages.fetchPypi { + inherit pname version; + sha256 = "1q42l25cryx0yp6lbbl0mxnxkb9h24wawhzhi1wkc3kj8zs5sifn"; }; propagatedBuildInputs = with pythonPackages; [ buildbot-pkg ]; diff --git a/pkgs/development/tools/build-managers/buildbot/skip_test_linux_distro.patch b/pkgs/development/tools/build-managers/buildbot/skip_test_linux_distro.patch new file mode 100644 index 00000000000..8fe5c7b56b4 --- /dev/null +++ b/pkgs/development/tools/build-managers/buildbot/skip_test_linux_distro.patch @@ -0,0 +1,11 @@ +diff -Nur buildbot-0.9.6/buildbot/test/unit/test_buildbot_net_usage_data.py buildbot-0.9.6.patched/buildbot/test/unit/test_buildbot_net_usage_data.py +--- buildbot-0.9.6/buildbot/test/unit/test_buildbot_net_usage_data.py 2017-04-19 16:57:02.000000000 +0200 ++++ buildbot-0.9.6.patched/buildbot/test/unit/test_buildbot_net_usage_data.py 2017-05-04 12:22:54.575762551 +0200 +@@ -147,6 +147,7 @@ + _sendBuildbotNetUsageData({'foo': 'bar'}) + + def test_linux_distro(self): ++ raise SkipTest("NixOS sandboxed builds hides /etc/os-release") + system = platform.system() + if system != "Linux": + raise SkipTest("test is only for linux") diff --git a/pkgs/development/tools/build-managers/buildbot/worker.nix b/pkgs/development/tools/build-managers/buildbot/worker.nix index b9b4b86aa44..28fb719d84a 100644 --- a/pkgs/development/tools/build-managers/buildbot/worker.nix +++ b/pkgs/development/tools/build-managers/buildbot/worker.nix @@ -3,11 +3,11 @@ pythonPackages.buildPythonApplication (rec { name = "${pname}-${version}"; pname = "buildbot-worker"; - version = "0.9.4"; + version = "0.9.7"; src = pythonPackages.fetchPypi { inherit pname version; - sha256 = "0rdrr8x7sn2nxl51p6h9ad42s3c28lb6sys84zrg0d7fm4zhv7hj"; + sha256 = "0s62i808l13a8dprmrb2dikh7d1xvvdnw3pfhl6im0i9fc64w6x4"; }; buildInputs = with pythonPackages; [ setuptoolsTrial mock ]; diff --git a/pkgs/development/tools/build-managers/cmake/search-path-3.2.patch b/pkgs/development/tools/build-managers/cmake/search-path-3.2.patch index ba7438d2c0f..623a7208a86 100644 --- a/pkgs/development/tools/build-managers/cmake/search-path-3.2.patch +++ b/pkgs/development/tools/build-managers/cmake/search-path-3.2.patch @@ -62,3 +62,16 @@ diff -ru3 cmake-3.4.3/Modules/Platform/UnixPaths.cmake cmake-3.4.3-new/Modules/P ) # Enable use of lib64 search path variants by default. +diff -ur cmake-3.7.2-orig/Modules/Platform/WindowsPaths.cmake cmake-3.7.2/Modules/Platform/WindowsPaths.cmake +--- cmake-3.7.2-orig/Modules/Platform/WindowsPaths.cmake 2017-04-26 09:08:39.095674666 -0700 ++++ cmake-3.7.2/Modules/Platform/WindowsPaths.cmake 2017-04-28 22:32:10.379015998 -0700 +@@ -66,7 +66,7 @@ + + if(CMAKE_CROSSCOMPILING AND NOT CMAKE_HOST_SYSTEM_NAME MATCHES "Windows") + # MinGW (useful when cross compiling from linux with CMAKE_FIND_ROOT_PATH set) +- list(APPEND CMAKE_SYSTEM_PREFIX_PATH /) ++ # list(APPEND CMAKE_SYSTEM_PREFIX_PATH /) + endif() + + list(APPEND CMAKE_SYSTEM_INCLUDE_PATH +diff -ur cmake-3.7.2-orig/Source/cmFindPackageCommand.cxx cmake-3.7.2/Source/cmFindPackageCommand.cxx diff --git a/pkgs/development/tools/build-managers/conan/default.nix b/pkgs/development/tools/build-managers/conan/default.nix index 417e492f7d0..69cc2db3ff2 100644 --- a/pkgs/development/tools/build-managers/conan/default.nix +++ b/pkgs/development/tools/build-managers/conan/default.nix @@ -11,7 +11,7 @@ pythonPackages.buildPythonApplication rec { }; propagatedBuildInputs = with pythonPackages; [ - requests2 fasteners pyyaml pyjwt colorama patch + requests fasteners pyyaml pyjwt colorama patch bottle pluginbase six distro pylint node-semver ]; diff --git a/pkgs/development/tools/build-managers/doit/default.nix b/pkgs/development/tools/build-managers/doit/default.nix new file mode 100644 index 00000000000..61f6a402cab --- /dev/null +++ b/pkgs/development/tools/build-managers/doit/default.nix @@ -0,0 +1,38 @@ +{ stdenv, fetchurl, python3Packages }: + +let + + name = "doit"; + version = "0.30.3"; + +in python3Packages.buildPythonApplication { + name = "${name}-${version}"; + + src = fetchurl { + url = "mirror://pypi/d/${name}/${name}-${version}.tar.gz"; + sha256 = "1fcsslc3mc4bszq5xdqbxv37720s1s31d6pbfwc2iyxk1x2wi219"; + }; + + buildInputs = with python3Packages; [ mock pytest ]; + + propagatedBuildInputs = with python3Packages; [ cloudpickle pyinotify ]; + + # Tests fail due to mysterious gdbm.open() resource temporarily + # unavailable errors. + doCheck = false; + checkPhase = "py.test"; + + meta = { + homepage = "http://pydoit.org/"; + description = "A task management & automation tool"; + license = stdenv.lib.licenses.mit; + longDescription = '' + doit is a modern open-source build-tool written in python + designed to be simple to use and flexible to deal with complex + work-flows. It is specially suitable for building and managing + custom work-flows where there is no out-of-the-box solution + available. + ''; + platforms = stdenv.lib.platforms.all; + }; +} diff --git a/pkgs/development/tools/build-managers/meson/default.nix b/pkgs/development/tools/build-managers/meson/default.nix index 558b8acf70f..d4dbc6b46d2 100644 --- a/pkgs/development/tools/build-managers/meson/default.nix +++ b/pkgs/development/tools/build-managers/meson/default.nix @@ -1,13 +1,23 @@ -{ lib, python3Packages, fetchurl }: -python3Packages.buildPythonPackage rec { - version = "0.35.0"; - name = "meson-${version}"; +{ lib, python3Packages }: +python3Packages.buildPythonApplication rec { + version = "0.40.0"; + pname = "meson"; + name = "${pname}-${version}"; - src = fetchurl { - url = "mirror://pypi/m/meson/${name}.tar.gz"; - sha256 = "0w4vian55cwcv2m5qzn73aznf9a0y24cszqb7dkpahrb9yrg25l3"; + src = python3Packages.fetchPypi { + inherit pname version; + sha256 = "1hb6y5phzd5738rlpz78w8hfzk7sbxj81551mb7bbkkqz8ql1gjw"; }; + postFixup = '' + pushd $out/bin + # undo shell wrapper as meson tools are called with python + for i in *; do + mv ".$i-wrapped" "$i" + done + popd + ''; + meta = with lib; { homepage = http://mesonbuild.com; description = "SCons-like build system that use python as a front-end language and Ninja as a building backend"; diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index 97e195f592e..d7f13de1d26 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,16 +1,16 @@ { lib, buildGoPackage, fetchFromGitLab, fetchurl, go-bindata }: let - version = "9.0.0"; + version = "9.1.0"; # Gitlab runner embeds some docker images these are prebuilt for arm and x86_64 docker_x86_64 = fetchurl { url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-x86_64.tar.xz"; - sha256 = "1f170akb7j7imgr18m32fy6v3rk98inrjl5a4xymfpivwwqyv9p8"; + sha256 = "1mdcw755fygnf30v0gr13mx20zjqmxg5w2kj3k2jgcsh3gyrvymr"; }; docker_arm = fetchurl { url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-arm.tar.xz"; - sha256 = "15mlix8j7bqjg5y07c439d7s197c16zxffknx42z1i3qxcz2mpa4"; + sha256 = "1m5p6mlhy3xf0chrjlfpdyp24pv32b61s8iryh6a617i91vpzjg6"; }; in buildGoPackage rec { @@ -29,7 +29,7 @@ buildGoPackage rec { owner = "gitlab-org"; repo = "gitlab-ci-multi-runner"; rev = "v${version}"; - sha256 = "1csha30lcwm1mk6hqbh0j8bb25apyni23szw79l8xjhmiw2ch619"; + sha256 = "0n8hcj2b1pb95x4bd7fb9ri43vgc4h2dj2v3iiziw2imqjyphfx4"; }; buildInputs = [ go-bindata ]; diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/v1-fix-shell-path.patch b/pkgs/development/tools/continuous-integration/gitlab-runner/v1-fix-shell-path.patch new file mode 100644 index 00000000000..612c9a51f28 --- /dev/null +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/v1-fix-shell-path.patch @@ -0,0 +1,13 @@ +diff --git a/shells/bash.go b/shells/bash.go +index c9c8b68..c97dbb5 100644 +--- a/shells/bash.go ++++ b/shells/bash.go +@@ -208,7 +208,7 @@ func (b *BashShell) GetConfiguration(info common.ShellScriptInfo) (script *commo + if info.User != "" { + script.Command = "su" + if runtime.GOOS == "linux" { +- script.Arguments = append(script.Arguments, "-s", "/bin/"+b.Shell) ++ script.Arguments = append(script.Arguments, "-s", "/run/current-system/sw/bin/"+b.Shell) + } + script.Arguments = append(script.Arguments, info.User) + script.Arguments = append(script.Arguments, "-c", shellCommand) diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/v1.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/v1.nix index d49221d6e6a..e0c3854740a 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/v1.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/v1.nix @@ -1,16 +1,16 @@ { lib, buildGoPackage, fetchFromGitLab, fetchurl, go-bindata }: let - version = "1.11.1"; + version = "1.11.2"; # Gitlab runner embeds some docker images these are prebuilt for arm and x86_64 docker_x86_64 = fetchurl { url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-x86_64.tar.xz"; - sha256 = "1fahwvwdli6glxsljrd030x15y18jwk72lg1xmrgms409r9y308m"; + sha256 = "08lacd2p7915y7yjnwkj2k0b0x4qj9kc53p7qgvmq8kdi31xnh4z"; }; docker_arm = fetchurl { url = "https://gitlab-ci-multi-runner-downloads.s3.amazonaws.com/v${version}/docker/prebuilt-arm.tar.xz"; - sha256 = "0nqda27qcb6r1p2xc2973g08fwb8cnmyc9rswy6776r8ypagn2zw"; + sha256 = "0lzvx3jfy8493q8zkbs7kgm5a3jgsi3f2x25jwg4lx7agcwwsygw"; }; in buildGoPackage rec { @@ -29,9 +29,11 @@ buildGoPackage rec { owner = "gitlab-org"; repo = "gitlab-ci-multi-runner"; rev = "v${version}"; - sha256 = "0ix00p9f01fg8m6p3b1c20hqrcv7pivh6hq92pb9qyiyzmcfap47"; + sha256 = "1sjvlb5981ykc8hr4kp1ibh9jw2wdjjp9zs2nqs9lpsav4nda5fr"; }; + patches = [ ./v1-fix-shell-path.patch ]; + buildInputs = [ go-bindata ]; preBuild = '' diff --git a/pkgs/development/tools/continuous-integration/jenkins/default.nix b/pkgs/development/tools/continuous-integration/jenkins/default.nix index 5a0cb4911e1..b2cf8b5a0ce 100644 --- a/pkgs/development/tools/continuous-integration/jenkins/default.nix +++ b/pkgs/development/tools/continuous-integration/jenkins/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "jenkins-${version}"; - version = "2.53"; + version = "2.56"; src = fetchurl { url = "http://mirrors.jenkins-ci.org/war/${version}/jenkins.war"; - sha256 = "16lgwgp4n161j4vjwkzzdz4v2d6vv62rrqmcfmb6zalyvp6wpj9r"; + sha256 = "1n0rqvnqv8dsqz8nmcxifg2qqs5hjqvi4bw3a3rjchndqyc3azij"; }; buildCommand = '' diff --git a/pkgs/development/tools/coursier/default.nix b/pkgs/development/tools/coursier/default.nix index 483905f5f2e..355dad4c03e 100644 --- a/pkgs/development/tools/coursier/default.nix +++ b/pkgs/development/tools/coursier/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "coursier-${version}"; - version = "1.0.0-RC1"; + version = "1.0.0-RC2"; src = fetchurl { url = "https://github.com/coursier/coursier/raw/v${version}/coursier"; - sha256 = "0dxwhqp7m7nmal8wn4chlmyvhdh6v3ja0nfz9x952kacf2vpnqw3"; + sha256 = "0w97s1dzfl3gyqa293k8n4hpsrqc10va1lc7jhb05208rsz1hf2m"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/database/sqlitebrowser/default.nix b/pkgs/development/tools/database/sqlitebrowser/default.nix index c9aecd59135..28c618c29a0 100644 --- a/pkgs/development/tools/database/sqlitebrowser/default.nix +++ b/pkgs/development/tools/database/sqlitebrowser/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, qt5, sqlite, cmake }: +{ stdenv, fetchFromGitHub, qtbase, qttools, makeQtWrapper, sqlite, cmake }: stdenv.mkDerivation rec { version = "3.9.1"; @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1s7f2d7wx2i68x60z7wdws3il6m83k5n5w5wyjvr0mz0mih0s150"; }; - buildInputs = [ qt5.qtbase qt5.qttools sqlite cmake ]; + buildInputs = [ qtbase qttools sqlite ]; + nativeBuildInputs = [ makeQtWrapper cmake ]; enableParallelBuilding = true; @@ -19,10 +20,13 @@ stdenv.mkDerivation rec { # A regression was introduced in CMakeLists.txt on v3.9.x # See https://github.com/sqlitebrowser/sqlitebrowser/issues/832 and issues/755 - patchPhase = '' + postPatch = '' substituteInPlace CMakeLists.txt --replace 'project("DB Browser for SQLite")' 'project(sqlitebrowser)' ''; + postInstall = '' + wrapQtProgram $out/bin/sqlitebrowser + ''; meta = with stdenv.lib; { description = "DB Browser for SQLite"; diff --git a/pkgs/development/tools/electron/default.nix b/pkgs/development/tools/electron/default.nix index f2db32c5eec..fc2651b9157 100644 --- a/pkgs/development/tools/electron/default.nix +++ b/pkgs/development/tools/electron/default.nix @@ -1,7 +1,7 @@ { stdenv, lib, libXScrnSaver, makeWrapper, fetchurl, unzip, atomEnv }: let - version = "1.6.2"; + version = "1.6.6"; name = "electron-${version}"; meta = with stdenv.lib; { @@ -17,7 +17,7 @@ let src = fetchurl { url = "https://github.com/electron/electron/releases/download/v${version}/electron-v${version}-linux-x64.zip"; - sha256 = "1dhyr8zkisnhjzk2v2zi8zp0jqg0v3g095xa430af6i1rm0qhs13"; + sha256 = "1k6y1wcsb2z9h8wdj5f1z1fprvc3bvsj4rfx58if7q74qiq3q102"; name = "${name}.zip"; }; @@ -45,7 +45,7 @@ let src = fetchurl { url = "https://github.com/electron/electron/releases/download/v${version}/electron-v${version}-darwin-x64.zip"; - sha256 = "11jfh4xvdrpda5ni08kl6wcg67ww9viagszk8gi00z0rlczrsbkf"; + sha256 = "1hp42iy32lymh9d5zp4vr51qjrr83wjxmbws0c16yw7zchq7fr64"; name = "${name}.zip"; }; diff --git a/pkgs/development/tools/flamegraph/default.nix b/pkgs/development/tools/flamegraph/default.nix index 434348473ef..51bdf772adb 100644 --- a/pkgs/development/tools/flamegraph/default.nix +++ b/pkgs/development/tools/flamegraph/default.nix @@ -1,13 +1,13 @@ { stdenv, fetchFromGitHub, perl }: stdenv.mkDerivation { - name = "FlameGraph-2015-10-10"; + name = "FlameGraph-2017-05-11"; src = fetchFromGitHub { owner = "brendangregg"; repo = "FlameGraph"; - rev = "182b24fb635345d48c91ed1de58a08b620312f3d"; - sha256 = "1djz0wl8202a6j87ka9j3d8iw3bli056lrn73gv2i65p16rwk9kc"; + rev = "6b2a446dfb5d8027a0adf14adf71748aa502c247"; + sha256 = "11j1776zsvhn9digqay1cbfhhxz01nv2hm44i4gnpqcxkada44l2"; }; buildInputs = [ perl ]; diff --git a/pkgs/development/tools/haskell/intero-nix-shim/default.nix b/pkgs/development/tools/haskell/intero-nix-shim/default.nix new file mode 100644 index 00000000000..7e82518c9b6 --- /dev/null +++ b/pkgs/development/tools/haskell/intero-nix-shim/default.nix @@ -0,0 +1,27 @@ +{ mkDerivation, base, cabal-install, directory, fetchFromGitHub +, filepath, intero, optparse-applicative, posix-escape, split +, stdenv, unix +}: +mkDerivation { + pname = "intero-nix-shim"; + version = "0.1.2"; + src = fetchFromGitHub { + owner = "michalrus"; + repo = "intero-nix-shim"; + rev = "0.1.2"; + sha256 = "0p1h3w15bgvsbzi7f1n2dxxxz9yq7vmbxmww5igc5d3dm76skgzg"; + }; + isLibrary = false; + isExecutable = true; + executableHaskellDepends = [ + base directory filepath optparse-applicative posix-escape split + unix + ]; + postInstall = '' + mkdir -p $out/libexec + ln -s ${cabal-install}/bin/cabal $out/libexec + ln -s ${intero }/bin/intero $out/libexec + ''; + homepage = "https://github.com/michalrus/intero-nix-shim"; + license = stdenv.lib.licenses.asl20; +} diff --git a/pkgs/development/tools/haskell/multi-ghc-travis/default.nix b/pkgs/development/tools/haskell/multi-ghc-travis/default.nix index 71b363b2740..90b61ec4124 100644 --- a/pkgs/development/tools/haskell/multi-ghc-travis/default.nix +++ b/pkgs/development/tools/haskell/multi-ghc-travis/default.nix @@ -2,30 +2,27 @@ stdenv.mkDerivation rec { name = "multi-ghc-travis-${version}"; - version = "git-2016-10-23"; + version = "git-2017-05-18"; buildInputs = [ ghc ]; src = fetchFromGitHub { owner = "hvr"; repo = "multi-ghc-travis"; - rev = "03dd35f3801d6af4224906d45e982a748de9960e"; - sha256 = "1s08n8diis22cafych66zihdnd5q3dkv8m6i3a2s5g5f1phsk3mi"; + rev = "3e1b3847583020f0e83c97fcf4bcfb7c90b78259"; + sha256 = "0hnwp9gsv2rnkxqiw4cg1vdi7wccajx0i9ryhw4lfr8nhkizbsww"; }; - patchPhase = '' - substituteInPlace make_travis_yml.hs --replace "make_travis_yml.hs" "multi-ghc-travis" - ''; - installPhase = '' mkdir -p $out/bin - ghc -O --make make_travis_yml_2.hs -o $out/bin/multi-ghc-travis + ghc -O --make make_travis_yml.hs -o $out/bin/make-travis-yml + ghc -O --make make_travis_yml_2.hs -o $out/bin/make-travis-yml-2 ''; meta = with stdenv.lib; { description = "Generate .travis.yml for multiple ghc versions"; homepage = "https://github.com/hvr/multi-ghc-travis"; - license = licenses.free; + license = licenses.bsd3; platforms = platforms.all; maintainers = with maintainers; [ jb55 ]; }; diff --git a/pkgs/development/tools/misc/binutils/default.nix b/pkgs/development/tools/misc/binutils/default.nix index 7b71a8e95d9..6bfd933bf9b 100644 --- a/pkgs/development/tools/misc/binutils/default.nix +++ b/pkgs/development/tools/misc/binutils/default.nix @@ -7,7 +7,7 @@ let basename = "binutils-2.28"; in let inherit (stdenv.lib) optional optionals optionalString; in stdenv.mkDerivation rec { - name = basename + optionalString (cross != null) "-${cross.config}"; + name = optionalString (cross != null) "${cross.config}-" + basename; src = fetchurl { url = "mirror://gnu/binutils/${basename}.tar.bz2"; @@ -40,6 +40,7 @@ stdenv.mkDerivation rec { ./no-plugins.patch ]; + # TODO: all outputs on all platform outputs = [ "out" ] ++ optional (cross == null && !stdenv.isDarwin) "lib" # problems in Darwin stdenv ++ [ "info" ] @@ -75,7 +76,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-shared" "--enable-deterministic-archives" "--disable-werror" ] ++ optional (stdenv.system == "mips64el-linux") "--enable-fix-loongson2f-nop" - ++ optional (cross != null) "--target=${cross.config}" + ++ optional (cross != null) "--target=${cross.config}" # TODO: make this unconditional ++ optionals gold [ "--enable-gold" "--enable-plugins" ] ++ optional (stdenv.system == "i686-linux") "--enable-targets=x86_64-linux-gnu"; @@ -95,6 +96,6 @@ stdenv.mkDerivation rec { /* Give binutils a lower priority than gcc-wrapper to prevent a collision due to the ld/as wrappers/symlinks in the latter. */ - priority = "10"; + priority = 10; }; } diff --git a/pkgs/development/tools/misc/checkbashisms/default.nix b/pkgs/development/tools/misc/checkbashisms/default.nix index b00b9cc9910..563d7693088 100644 --- a/pkgs/development/tools/misc/checkbashisms/default.nix +++ b/pkgs/development/tools/misc/checkbashisms/default.nix @@ -1,33 +1,26 @@ { stdenv, fetchurl, perl }: stdenv.mkDerivation rec { - inherit perl; - - name = "checkbashisms"; version = "2.0.0.2"; + name = "checkbashisms-${version}"; src = fetchurl { - url = "mirror://sourceforge/project/checkbaskisms/${version}/${name}"; + url = "mirror://sourceforge/project/checkbaskisms/${version}/checkbashisms"; sha256 = "1vm0yykkg58ja9ianfpm3mgrpah109gj33b41kl0jmmm11zip9jd"; }; + buildInputs = [ perl ]; + # The link returns directly the script. No need for unpacking unpackPhase = "true"; installPhase = '' - mkdir -p $out/bin - cp $src $out/bin/checkbashisms - chmod 755 $out/bin/checkbashisms - ''; - - # Makes sure to point to the proper perl version - fixupPhase = '' - sed -e "s#/usr/bin/perl#$perl/bin/perl#" -i $out/bin/checkbashisms + install -D -m755 $src $out/bin/checkbashisms ''; meta = { homepage = http://sourceforge.net/projects/checkbaskisms/; description = "Check shell scripts for non-portable syntax"; license = stdenv.lib.licenses.gpl2; - platforms = stdenv.lib.platforms.linux; + platforms = stdenv.lib.platforms.unix; }; } diff --git a/pkgs/development/tools/misc/editorconfig-core-c/default.nix b/pkgs/development/tools/misc/editorconfig-core-c/default.nix index aae4a2fd5a1..5509ededb07 100644 --- a/pkgs/development/tools/misc/editorconfig-core-c/default.nix +++ b/pkgs/development/tools/misc/editorconfig-core-c/default.nix @@ -1,21 +1,21 @@ { stdenv, fetchgit, cmake, pcre, doxygen }: stdenv.mkDerivation rec { - name = "editorconfig-core-c-${meta.version}"; src = fetchgit { url = "https://github.com/editorconfig/editorconfig-core-c.git"; - rev = "d1c2c881158dfb9faa4498a0b19593dcd105d6b8"; - fetchSubmodules = true; + rev = "v${meta.version}"; sha256 = "0awpb63ci85kal3pnlj2b54bay8igj1rbc13d8gqkvidlb51nnx4"; + fetchSubmodules = true; inherit name; }; - buildInputs = [ cmake pcre doxygen ]; + buildInputs = [ pcre ]; + nativeBuildInputs = [ cmake doxygen ]; meta = with stdenv.lib; { - homepage = "http://editorconfig.org/"; + homepage = http://editorconfig.org/; description = "EditorConfig core library written in C"; longDescription = '' EditorConfig makes it easy to maintain the correct coding style when @@ -25,11 +25,10 @@ stdenv.mkDerivation rec { by those editors. For information on the file format and supported text editors, see the EditorConfig website. ''; - downloadPage = "https://github.com/editorconfig/editorconfig-core-c"; + downloadPage = https://github.com/editorconfig/editorconfig-core-c; license = with licenses; [ bsd2 bsd3 ]; version = "0.12.1"; - maintainers = [ maintainers.dochang ]; + maintainers = with maintainers; [ dochang ]; platforms = platforms.unix; }; - } diff --git a/pkgs/development/tools/misc/hydra/default.nix b/pkgs/development/tools/misc/hydra/default.nix index 1e04a10eccd..ba2c62ce8ea 100644 --- a/pkgs/development/tools/misc/hydra/default.nix +++ b/pkgs/development/tools/misc/hydra/default.nix @@ -62,15 +62,15 @@ let }; in releaseTools.nixBuild rec { name = "hydra-${version}"; - version = "2017-03-21"; + version = "2017-04-26"; inherit stdenv; src = fetchFromGitHub { owner = "NixOS"; repo = "hydra"; - rev = "57bc0eaead8c76ffd71ddc49adfacc47bb8a75ac"; - sha256 = "1kshl6ms42fgh621s1ba3a224rawqzgvl89rq1k6c9qhlplpndd9"; + rev = "1f94f0369937c9187b158f53a4a361507a62c5e9"; + sha256 = "0h013690pwm20vykccr6l4k0q1jdb065127pblfhs23a287ayqlm"; }; buildInputs = @@ -104,7 +104,7 @@ in releaseTools.nixBuild rec { configureFlags = [ "--with-docbook-xsl=${docbook_xsl}/xml/xsl/docbook" ]; - preHook = '' + shellHook = '' PATH=$(pwd)/src/script:$(pwd)/src/hydra-eval-jobs:$(pwd)/src/hydra-queue-runner:$(pwd)/src/hydra-evaluator:$PATH PERL5LIB=$(pwd)/src/lib:$PERL5LIB; ''; diff --git a/pkgs/development/tools/misc/premake/5.nix b/pkgs/development/tools/misc/premake/5.nix new file mode 100644 index 00000000000..b0bb32449a4 --- /dev/null +++ b/pkgs/development/tools/misc/premake/5.nix @@ -0,0 +1,40 @@ +{ stdenv, fetchFromGitHub, CoreServices }: + +with stdenv.lib; + +stdenv.mkDerivation rec { + name = "premake-${version}"; + version = "5.0.0pre.alpha.11"; + + src = fetchFromGitHub { + owner = "premake"; + repo = "premake-core"; + rev = "5dfb0238bc309df04819dd430def621ce854678d"; + sha256 = "0k9xbqrnbwj0hnmdgcrwn70py1kiqvr10l42aw42xnlmdyg1sgsc"; + }; + + buildInputs = optional stdenv.isDarwin [ CoreServices ]; + + patchPhase = optional stdenv.isDarwin '' + substituteInPlace premake5.lua \ + --replace -mmacosx-version-min=10.4 -mmacosx-version-min=10.5 + ''; + + buildPhase = + if stdenv.isDarwin then '' + make -f Bootstrap.mak osx + '' else '' + make -f Bootstrap.mak linux + ''; + + installPhase = '' + install -Dm755 bin/release/premake5 $out/bin/premake5 + ''; + + meta = { + homepage = https://premake.github.io; + description = "A simple build configuration and project generation tool using lua"; + license = stdenv.lib.licenses.bsd3; + platforms = platforms.darwin ++ platforms.linux; + }; +} diff --git a/pkgs/development/tools/misc/sysbench/default.nix b/pkgs/development/tools/misc/sysbench/default.nix index b6223230c1c..540db210eb4 100644 --- a/pkgs/development/tools/misc/sysbench/default.nix +++ b/pkgs/development/tools/misc/sysbench/default.nix @@ -1,20 +1,18 @@ -{ stdenv, fetchgit, libmysql, libxslt, zlib, autoreconfHook }: +{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, vim, libmysql, + libaio }: stdenv.mkDerivation rec { - name = "sysbench-2015-04-22"; + name = "sysbench-1.0.6"; - buildInputs = [ autoreconfHook libmysql libxslt zlib ]; + buildInputs = [ autoreconfHook pkgconfig vim libmysql libaio ]; - src = fetchgit { - url = git://github.com/akopytov/sysbench.git; - rev = "2b3042883090c9cf8cb9be2b24d3590cdcee112f"; - sha256 = "1xlb3fracha3wva3dmmjk36b262vblynkmiz8n0mn1vkc78bssaw"; + src = fetchFromGitHub { + owner = "akopytov"; + repo = "sysbench"; + rev = "1.0.6"; + sha256 = "0y3hlhzrggyyxwf378n006zlg2kwhmhh6vq6il0qn9agjmjmhl5l"; }; - preAutoreconf = '' - touch NEWS AUTHORS - ''; - meta = { description = "Modular, cross-platform and multi-threaded benchmark tool"; license = stdenv.lib.licenses.gpl2; diff --git a/pkgs/development/tools/misc/usb-modeswitch/data.nix b/pkgs/development/tools/misc/usb-modeswitch/data.nix index a45db5fbcaf..0ad79005d91 100644 --- a/pkgs/development/tools/misc/usb-modeswitch/data.nix +++ b/pkgs/development/tools/misc/usb-modeswitch/data.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchurl, pkgconfig, libusb1, tcl, usb-modeswitch }: +{ stdenv, fetchurl, tcl, usb-modeswitch }: stdenv.mkDerivation rec { name = "usb-modeswitch-data-${version}"; @@ -15,10 +15,9 @@ stdenv.mkDerivation rec { sed -i 's@usb_modeswitch@${usb-modeswitch}/bin/usb_modeswitch@g' 40-usb_modeswitch.rules ''; - buildInputs = [ libusb1 usb-modeswitch ]; # we add tcl here so we can patch in support for new devices by dropping config into # the usb_modeswitch.d directory - nativeBuildInputs = [ pkgconfig tcl ]; + nativeBuildInputs = [ tcl ]; meta = with stdenv.lib; { description = "Device database and the rules file for 'multi-mode' USB devices"; diff --git a/pkgs/development/tools/misc/ycmd/default.nix b/pkgs/development/tools/misc/ycmd/default.nix index eb02d0e79dd..cc805b499d4 100644 --- a/pkgs/development/tools/misc/ycmd/default.nix +++ b/pkgs/development/tools/misc/ycmd/default.nix @@ -2,7 +2,7 @@ , gocode ? null , godef ? null , rustracerd ? null -, Cocoa ? null +, fixDarwinDylibNames, Cocoa ? null }: stdenv.mkDerivation rec { @@ -15,7 +15,8 @@ stdenv.mkDerivation rec { sha256 = "0p5knlxgy66zi229ns1lfdhz5lram93vahmmk54w98fr3h8b1yfj"; }; - buildInputs = [ cmake boost ] ++ stdenv.lib.optional stdenv.isDarwin Cocoa; + buildInputs = [ cmake boost ] + ++ stdenv.lib.optional stdenv.isDarwin [ fixDarwinDylibNames Cocoa ]; buildPhase = '' export EXTRA_CMAKE_ARGS=-DPATH_TO_LLVM_ROOT=${llvmPackages.clang-unwrapped} @@ -44,7 +45,7 @@ stdenv.mkDerivation rec { " ycmd/__main__.py mkdir -p $out/lib/ycmd - cp -r ycmd/ CORE_VERSION libclang.so.* ycm_core.so $out/lib/ycmd/ + cp -r ycmd/ CORE_VERSION libclang.so.* libclang.dylib* ycm_core.so $out/lib/ycmd/ mkdir -p $out/bin ln -s $out/lib/ycmd/ycmd/__main__.py $out/bin/ycmd @@ -78,7 +79,7 @@ stdenv.mkDerivation rec { description = "A code-completion and comprehension server"; homepage = https://github.com/Valloric/ycmd; license = licenses.gpl3; - maintainers = with maintainers; [ rasendubi cstrahan ]; + maintainers = with maintainers; [ rasendubi cstrahan lnl7 ]; platforms = platforms.all; }; } diff --git a/pkgs/development/tools/ocaml/camlp5/default.nix b/pkgs/development/tools/ocaml/camlp5/default.nix index 12148625a05..bc98e6454d1 100644 --- a/pkgs/development/tools/ocaml/camlp5/default.nix +++ b/pkgs/development/tools/ocaml/camlp5/default.nix @@ -24,6 +24,8 @@ stdenv.mkDerivation { postInstall = "cp ${metafile} $out/lib/ocaml/${ocaml.version}/site-lib/camlp5/META"; + dontStrip = true; + meta = with stdenv.lib; { description = "Preprocessor-pretty-printer for OCaml"; longDescription = '' diff --git a/pkgs/development/tools/ocaml/cppo/default.nix b/pkgs/development/tools/ocaml/cppo/default.nix index 59130bec50e..e778337ca5c 100644 --- a/pkgs/development/tools/ocaml/cppo/default.nix +++ b/pkgs/development/tools/ocaml/cppo/default.nix @@ -1,10 +1,10 @@ { stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild }: let pname = "cppo"; - version = "1.3.2"; + version = "1.5.0"; webpage = "http://mjambon.com/${pname}.html"; in -assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "3.12"; +assert stdenv.lib.versionAtLeast ocaml.version "3.12"; stdenv.mkDerivation rec { name = "${pname}-${version}"; @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { owner = "mjambon"; repo = pname; rev = "v${version}"; - sha256 = "06j0zr78f04ahxi2459vjn61z25hkvs4dfj76200ydg3g6ifb3k1"; + sha256 = "1xqldjz9risndnabvadw41fdbi5sa2hl4fnqls7j9xfbby1izbg8"; }; buildInputs = [ ocaml findlib ocamlbuild ]; diff --git a/pkgs/development/tools/ocaml/utop/default.nix b/pkgs/development/tools/ocaml/utop/default.nix index 31549729cfe..c50e6a108bd 100644 --- a/pkgs/development/tools/ocaml/utop/default.nix +++ b/pkgs/development/tools/ocaml/utop/default.nix @@ -1,5 +1,5 @@ -{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, camlp4, ocaml_react -, lambdaTerm, ocaml_lwt, makeWrapper, camomile, zed, cppo, ppx_tools +{ stdenv, fetchurl, bash, ocaml, findlib, ocamlbuild, camlp4, ocaml_react +, lambdaTerm, ocaml_lwt, camomile, zed, cppo, ppx_tools, makeWrapper }: stdenv.mkDerivation rec { @@ -11,7 +11,8 @@ stdenv.mkDerivation rec { sha256 = "16z02vp9n97iax4fqpbi7v86r75vbabxvnd1rirh8w2miixs1g4x"; }; - buildInputs = [ ocaml findlib ocamlbuild makeWrapper cppo camlp4 ppx_tools ]; + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ ocaml findlib ocamlbuild cppo camlp4 ppx_tools ]; propagatedBuildInputs = [ lambdaTerm ocaml_lwt ]; @@ -28,21 +29,41 @@ stdenv.mkDerivation rec { dontStrip = true; postFixup = - let p = p: "${p}/lib/ocaml/${ocaml.version}/site-lib"; in - '' - pushd $out/bin - for prog in * + let + path = "etc/utop/env"; + + # derivation of just runtime deps so env vars created by + # setup-hooks can be saved for use at runtime + runtime = stdenv.mkDerivation rec { + name = "utop-runtime-env-${version}"; + + buildInputs = [ findlib ] ++ propagatedBuildInputs; + + phases = [ "installPhase" ]; + + installPhase = '' + mkdir -p "$out"/${path} + for e in OCAMLPATH CAML_LD_LIBRARY_PATH; do + printf %s "''${!e}" > "$out"/${path}/$e + done + ''; + }; + + get = key: ''$(cat "${runtime}/${path}/${key}")''; + in '' + for prog in "$out"/bin/* do - mv $prog .$prog-wrapped - cat > $prog <<EOF -#!/bin/sh -export CAML_LD_LIBRARY_PATH=${p ocaml_lwt}/lwt:${p lambdaTerm}/lambda-term:'\$CAML_LD_LIBRARY_PATH' -export OCAMLPATH=${p ocaml_lwt}:${p ocaml_react}:${p camomile}:${p zed}:${p lambdaTerm}:"$out"/lib/ocaml/${ocaml.version}/site-lib:'\$OCAMLPATH' -${ocaml}/bin/ocamlrun $out/bin/.$prog-wrapped \$* -EOF - chmod +x $prog + + # Note: wrapProgram by default calls 'exec -a $0 ...', but this + # breaks utop on Linux with OCaml 4.04, and is disabled with + # '--argv0 ""' flag. See https://github.com/NixOS/nixpkgs/issues/24496 + wrapProgram "$prog" \ + --argv0 "" \ + --prefix CAML_LD_LIBRARY_PATH ":" "${get "CAML_LD_LIBRARY_PATH"}" \ + --prefix OCAMLPATH ":" "${get "OCAMLPATH"}" \ + --prefix OCAMLPATH ":" $(unset OCAMLPATH; addOCamlPath "$out"; printf %s "$OCAMLPATH") + done - popd ''; meta = { diff --git a/pkgs/development/tools/parsing/antlr/3.4.nix b/pkgs/development/tools/parsing/antlr/3.4.nix index a92e8aa7251..e6765806e4f 100644 --- a/pkgs/development/tools/parsing/antlr/3.4.nix +++ b/pkgs/development/tools/parsing/antlr/3.4.nix @@ -33,6 +33,6 @@ stdenv.mkDerivation rec { walk parse trees. ''; homepage = http://www.antlr.org/; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/tools/parsing/byacc/default.nix b/pkgs/development/tools/parsing/byacc/default.nix index fdfac484bf1..c34eb9fc708 100644 --- a/pkgs/development/tools/parsing/byacc/default.nix +++ b/pkgs/development/tools/parsing/byacc/default.nix @@ -1,17 +1,23 @@ { stdenv, fetchurl }: -stdenv.mkDerivation { - name = "byacc-1.9"; +stdenv.mkDerivation rec { + name = "byacc-${version}"; + version = "20170201"; src = fetchurl { - url = ftp://invisible-island.net/byacc/byacc-20140715.tgz; - sha256 = "1rbzx5ipkvih9rjfdfv6310wcr6mxjbdlsh9zcv5aaz6yxxxil7c"; + urls = [ + "ftp://invisible-island.net/byacc/${name}.tgz" + "http://invisible-mirror.net/archives/byacc/${name}.tgz" + ]; + sha256 = "90b768d177f91204e6e7cef226ae1dc7cac831b625774cebd3e233a917754f91"; }; - meta = { + doCheck = true; + + meta = with stdenv.lib; { description = "Berkeley YACC"; - homepage = http://dickey.his.com/byacc/byacc.html; - license = stdenv.lib.licenses.publicDomain; - platforms = stdenv.lib.platforms.unix; + homepage = http://invisible-island.net/byacc/byacc.html; + license = licenses.publicDomain; + platforms = platforms.unix; }; } diff --git a/pkgs/development/tools/rtags/default.nix b/pkgs/development/tools/rtags/default.nix index 4f396e26bf9..6ab227dedcd 100644 --- a/pkgs/development/tools/rtags/default.nix +++ b/pkgs/development/tools/rtags/default.nix @@ -22,6 +22,12 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + postInstall = lib.optionalString stdenv.isDarwin '' + for f in $out/bin/{rc,rdm,rp}; do + install_name_tool -change @rpath/libclang.dylib ${llvmPackages.clang.cc}/lib/libclang.dylib ''${f} + done + ''; + meta = { description = "C/C++ client-server indexer based on clang"; homepage = https://github.com/andersbakken/rtags; diff --git a/pkgs/development/tools/rust/bindgen/default.nix b/pkgs/development/tools/rust/bindgen/default.nix index 232be1fea38..79c400fd334 100644 --- a/pkgs/development/tools/rust/bindgen/default.nix +++ b/pkgs/development/tools/rust/bindgen/default.nix @@ -1,25 +1,30 @@ -{ stdenv, fetchFromGitHub, rustPlatform, llvmPackages }: +{ stdenv, fetchFromGitHub, rustPlatform, makeWrapper, llvmPackages }: # Future work: Automatically communicate NIX_CFLAGS_COMPILE to bindgen's tests and the bindgen executable itself. rustPlatform.buildRustPackage rec { name = "rust-bindgen-${version}"; - version = "0.22.1"; + version = "0.24.0"; src = fetchFromGitHub { owner = "servo"; repo = "rust-bindgen"; rev = "v${version}"; - sha256 = "10cavj6rrbdqi4ldfmhxy6xxp0q65pxiypdgq2ckz0c37g04qqqs"; + sha256 = "1nzva8g5nj7m2w8vax86p4rd02ci8793nhnm7sf76ajr4hfnx323"; }; + nativeBuildInputs = [ makeWrapper ]; buildInputs = [ llvmPackages.clang-unwrapped ]; configurePhase = '' export LIBCLANG_PATH="${llvmPackages.clang-unwrapped}/lib" ''; - depsSha256 = "1gvva6f64ndzsswv1a7c31wym12yp4cg1la4zjwlzkrx62kgyk8x"; + postInstall = '' + wrapProgram $out/bin/bindgen --set LIBCLANG_PATH "${llvmPackages.clang-unwrapped}/lib" + ''; + + depsSha256 = "1l8c48y67azzwmv4hzghia1c53b5dw6qiv22cgv8zbyrg20aj8as"; doCheck = false; # A test fails because it can't find standard headers in NixOS diff --git a/pkgs/development/tools/selenium/chromedriver/default.nix b/pkgs/development/tools/selenium/chromedriver/default.nix index 488fefe62c4..48b9e206eaf 100644 --- a/pkgs/development/tools/selenium/chromedriver/default.nix +++ b/pkgs/development/tools/selenium/chromedriver/default.nix @@ -1,31 +1,39 @@ { stdenv, fetchurl, cairo, fontconfig, freetype, gdk_pixbuf, glib , glibc, gtk2, libX11, makeWrapper, nspr, nss, pango, unzip, gconf -, libXi, libXrender, libXext +, libXi, libXrender, libXext, lib }: - -# note: there is a i686 version available as well -assert stdenv.system == "x86_64-linux"; - +let + spec = if stdenv.system == "i686-linux" then { system="linux32"; sha256="70845d81304c5f5f0b7f65274216e613e867e621676a09790c8aa8ef81ea9766"; } + else if stdenv.system == "x86_64-linux" then { system="linux64"; sha256="bb2cf08f2c213f061d6fbca9658fc44a367c1ba7e40b3ee1e3ae437be0f901c2"; } + else if stdenv.system == "x86_64-darwin" then { system="mac64"; sha256="6c30bba7693ec2d9af7cd9a54729e10aeae85c0953c816d9c4a40a1a72fd8be0"; } + else abort "missing chromedriver binary for ${stdenv.system}"; +in stdenv.mkDerivation rec { - product = "chromedriver_linux64"; - name = "${product}-2.25"; - version = "2.25"; + name = "chromedriver-${version}"; + version = "2.29"; src = fetchurl { - url = "http://chromedriver.storage.googleapis.com/${version}/${product}.zip"; - sha256 = "0z6c3q73pi83iidq3n85sxhc9yikkf9rf22hnn8manrhfsg784fh"; + url = "http://chromedriver.storage.googleapis.com/${version}/chromedriver_${spec.system}.zip"; + sha256 = spec.sha256; }; buildInputs = [ unzip makeWrapper ]; unpackPhase = "unzip $src"; + libs = stdenv.lib.makeLibraryPath [ + stdenv.cc.cc.lib + cairo fontconfig freetype + gdk_pixbuf glib gtk2 gconf + libX11 nspr nss pango libXrender + gconf libXext libXi + ]; + installPhase = '' - mkdir -p $out/bin - mv chromedriver $out/bin + install -m755 -D chromedriver $out/bin/chromedriver + '' + lib.optionalString (!stdenv.isDarwin) '' patchelf --set-interpreter ${glibc.out}/lib/ld-linux-x86-64.so.2 $out/bin/chromedriver - wrapProgram "$out/bin/chromedriver" \ - --prefix LD_LIBRARY_PATH : "${stdenv.lib.makeLibraryPath [ stdenv.cc.cc.lib cairo fontconfig freetype gdk_pixbuf glib gtk2 libX11 nspr nss pango libXrender gconf libXext libXi ]}:\$LD_LIBRARY_PATH" + wrapProgram "$out/bin/chromedriver" --prefix LD_LIBRARY_PATH : "${libs}:\$LD_LIBRARY_PATH" ''; meta = with stdenv.lib; { @@ -33,6 +41,6 @@ stdenv.mkDerivation rec { description = "A WebDriver server for running Selenium tests on Chrome"; license = licenses.bsd3; maintainers = [ maintainers.goibhniu ]; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/development/tools/vndr/default.nix b/pkgs/development/tools/vndr/default.nix index 14f01863c8a..426d52eba70 100644 --- a/pkgs/development/tools/vndr/default.nix +++ b/pkgs/development/tools/vndr/default.nix @@ -2,16 +2,17 @@ buildGoPackage rec { name = "vndr-${version}"; - version = "20161110-${lib.strings.substring 0 7 rev}"; - rev = "cf8678fba5591fbacc4dafab1a22d64f6c603c20"; + version = "20170511-${lib.strings.substring 0 7 rev}"; + rev = "0cb33a0eb64c8ca73b8e2939a3430b22fbb8d3e3"; goPackagePath = "github.com/LK4D4/vndr"; + excludedPackages = "test"; src = fetchFromGitHub { inherit rev; owner = "LK4D4"; repo = "vndr"; - sha256 = "1fbrpdpfir05hqj1dr8rxw8hnjkhl0xbzncxkva56508vyyzbxcs"; + sha256 = "02vdr59xn79hffayfcxg29nf62rdc33a60i104fgj746kcswgy5n"; }; meta = { diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 770eb9cc78b..fd30a179876 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { name = "yarn-${version}"; - version = "0.22.0"; + version = "0.23.4"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "1hs4fqjj9rg47ipcagpdk3grh7aa0ls3vsxq4q20d5hb43s9n5gs"; + sha256 = "1jv2fbi10rx6whqn1krn9lrgwpnmzlbfym23m0df4y6k9pfyc9pz"; }; buildInputs = [makeWrapper nodejs]; |