diff options
Diffstat (limited to 'pkgs/development/r-modules/default.nix')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 25 |
1 files changed, 1 insertions, 24 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 2019ee45f3c..df44139024a 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -264,7 +264,6 @@ let gmp = [ pkgs.gmp.dev ]; graphscan = [ pkgs.gsl_1 ]; gsl = [ pkgs.gsl_1 ]; - h5 = [ pkgs.hdf5-cpp pkgs.which ]; haven = [ pkgs.libiconv pkgs.zlib.dev ]; h5vc = [ pkgs.zlib.dev ]; HiCseg = [ pkgs.gsl_1 ]; @@ -293,7 +292,6 @@ let phytools = [ pkgs.which ]; PKI = [ pkgs.openssl.dev ]; png = [ pkgs.libpng.dev ]; - PopGenome = [ pkgs.zlib.dev ]; proj4 = [ pkgs.proj ]; protolite = [ pkgs.protobuf ]; qtbase = [ pkgs.qt4 ]; @@ -311,14 +309,12 @@ let rgdal = [ pkgs.proj.dev pkgs.gdal ]; rgeos = [ pkgs.geos ]; rggobi = [ pkgs.ggobi pkgs.gtk2.dev pkgs.libxml2.dev ]; - rgl = [ pkgs.libGLU pkgs.libGL pkgs.xlibsWrapper ]; Rglpk = [ pkgs.glpk ]; RGtk2 = [ pkgs.gtk2.dev ]; rhdf5 = [ pkgs.zlib ]; Rhdf5lib = [ pkgs.zlib ]; Rhpc = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.openmpi pkgs.pcre.dev ]; Rhtslib = [ pkgs.zlib.dev pkgs.automake pkgs.autoconf ]; - RJaCGH = [ pkgs.zlib.dev ]; rjags = [ pkgs.jags ]; rJava = [ pkgs.zlib pkgs.bzip2.dev pkgs.icu pkgs.lzma.dev pkgs.pcre.dev pkgs.jdk pkgs.libzip ]; Rlibeemd = [ pkgs.gsl_1 ]; @@ -368,7 +364,6 @@ let udunits2 = [ pkgs.udunits pkgs.expat ]; units = [ pkgs.udunits ]; V8 = [ pkgs.v8_3_14 ]; - VBLPCM = [ pkgs.gsl_1 ]; WhopGenome = [ pkgs.zlib.dev ]; XBRL = [ pkgs.zlib pkgs.libxml2.dev ]; xml2 = [ pkgs.libxml2.dev ] ++ lib.optionals stdenv.isDarwin [ pkgs.perl ]; @@ -393,7 +388,6 @@ let # sort -t '=' -k 2 svKomodo = [ pkgs.which ]; nat = [ pkgs.which ]; - nat_nblast = [ pkgs.which ]; nat_templatebrains = [ pkgs.which ]; pbdZMQ = lib.optionals stdenv.isDarwin [ pkgs.darwin.binutils ]; RMark = [ pkgs.which ]; @@ -404,6 +398,7 @@ let RCurl = [ pkgs.curl.dev ]; R2SWF = [ pkgs.pkgconfig ]; rggobi = [ pkgs.pkgconfig ]; + rgl = [ pkgs.libGLU pkgs.libGLU.dev pkgs.libGL pkgs.xlibsWrapper ]; RGtk2 = [ pkgs.pkgconfig ]; RProtoBuf = [ pkgs.pkgconfig ]; Rpoppler = [ pkgs.pkgconfig ]; @@ -413,7 +408,6 @@ let fftw = [ pkgs.pkgconfig ]; geoCount = [ pkgs.pkgconfig ]; gdtools = [ pkgs.pkgconfig ]; - JuniperKernel = lib.optionals stdenv.isDarwin [ pkgs.darwin.binutils ]; jqr = [ pkgs.jq.lib ]; kza = [ pkgs.pkgconfig ]; magick = [ pkgs.pkgconfig ]; @@ -435,8 +429,6 @@ let rPython = [ pkgs.which ]; gridGraphics = [ pkgs.which ]; adimpro = [ pkgs.which pkgs.xorg.xdpyinfo ]; - PET = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ]; - dti = [ pkgs.which pkgs.xorg.xdpyinfo pkgs.imagemagick ]; mzR = [ pkgs.netcdf ]; cluster = [ pkgs.libiconv ]; KernSmooth = [ pkgs.libiconv ]; @@ -524,7 +516,6 @@ let "fscaret" "fSRM" "gcmr" - "GeoGenetix" "geomorph" "geoR" "geoRglm" @@ -571,7 +562,6 @@ let "mritc" "multgee" "multibiplotGUI" - "nodiv" "OligoSpecificitySystem" "onemap" "OpenRepGrid" @@ -644,7 +634,6 @@ let "rsgcc" "RSurvey" "RunuranGUI" - "sharpshootR" "simba" "Simile" "SimpleTable" @@ -668,7 +657,6 @@ let "SYNCSA" "SyNet" "tcltk2" - "TED" "TestScorer" "TIMP" "titan" @@ -768,17 +756,6 @@ let ''; }); - JuniperKernel = old.JuniperKernel.overrideDerivation (attrs: { - postPatch = lib.optionalString stdenv.isDarwin '' - for file in {R,src}/*.R; do - sed -i 's#system("which \(otool\|install_name_tool\)"[^)]*)#"${pkgs.darwin.cctools}/bin/\1"#g' $file - done - ''; - preConfigure = '' - patchShebangs configure - ''; - }); - jqr = old.jqr.overrideDerivation (attrs: { preConfigure = '' patchShebangs configure |