diff options
Diffstat (limited to 'pkgs/development/r-modules/default.nix')
| -rw-r--r-- | pkgs/development/r-modules/default.nix | 36 |
1 files changed, 27 insertions, 9 deletions
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index 149d9c0ac9f..16cbe2c510b 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -465,6 +465,18 @@ let statmod = [ pkgs.libiconv ]; rsvg = [ pkgs.librsvg.dev ]; ssh = with pkgs; [ libssh ]; + s2 = [ pkgs.openssl.dev ]; + ArrayExpressHTS = with pkgs; [ zlib.dev curl.dev which ]; + bbl = with pkgs; [ gsl ]; + writexl = with pkgs; [ zlib.dev ]; + qpdf = with pkgs; [ libjpeg.dev zlib.dev ]; + vcfR = with pkgs; [ zlib.dev ]; + bio3d = with pkgs; [ zlib.dev ]; + arrangements = with pkgs; [ gmp.dev ]; + spp = with pkgs; [ zlib.dev ]; + Rbowtie = with pkgs; [ zlib.dev ]; + gaston = with pkgs; [ zlib.dev ]; + csaw = with pkgs; [ zlib.dev curl ]; }; packagesRequireingX = [ @@ -546,6 +558,7 @@ let "KappaGUI" "likeLTD" "logmult" + "loon" "LS2Wstat" "MareyMap" "memgene" @@ -708,15 +721,6 @@ let preConfigure = "patchShebangs configure"; }); - ggbio = old.ggbio.overrideDerivation (attrs: { - patches = [ - (pkgs.fetchpatch { - url = "https://github.com/tengfei/ggbio/commit/b04a9840cf5c0bd0514db2536f2e610bbd364727.patch"; - sha256 = "blwtObyIYo1UBWz4nlmcJ8Nyw/n0qwmJrtwFWuoUyMg="; - }) - ]; - }); - RcppArmadillo = old.RcppArmadillo.overrideDerivation (attrs: { patchPhase = "patchShebangs configure"; }); @@ -979,6 +983,20 @@ let ''; }); + sodium = old.sodium.overrideDerivation (attrs: with pkgs; { + preConfigure = '' + patchShebangs configure + ''; + nativeBuildInputs = [ pkg-config ] ++ attrs.nativeBuildInputs; + buildInputs = [ libsodium.dev ] ++ attrs.buildInputs; + }); + + Rhtslib = old.Rhtslib.overrideDerivation (attrs: { + preConfigure = '' + substituteInPlace R/zzz.R --replace "-lcurl" "-L${pkgs.curl.out}/lib -lcurl" + ''; + }); + }; in self |