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Diffstat (limited to 'pkgs/development/python-modules/cnvkit/default.nix')
-rw-r--r-- | pkgs/development/python-modules/cnvkit/default.nix | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/pkgs/development/python-modules/cnvkit/default.nix b/pkgs/development/python-modules/cnvkit/default.nix new file mode 100644 index 00000000000..905b274a055 --- /dev/null +++ b/pkgs/development/python-modules/cnvkit/default.nix @@ -0,0 +1,48 @@ +{ lib +, fetchPypi +, rPackages +, rWrapper +, buildPythonPackage +, biopython +, numpy +, scipy +, pandas +, matplotlib +, reportlab +, pysam +, future +, pillow +, pomegranate +, pyfaidx +}: + +buildPythonPackage rec { + pname = "CNVkit"; + version = "0.9.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "1hj8c98s538i0hg5mrz4bw4v07qmcl51rhxq611rj2nglnc9r25y"; + }; + + propagatedBuildInputs = [ + biopython + numpy + scipy + pandas + matplotlib + reportlab + pyfaidx + pysam + future + pillow + pomegranate + ]; + + meta = with lib; { + homepage = "https://cnvkit.readthedocs.io"; + description = "A Python library and command-line software toolkit to infer and visualize copy number from high-throughput DNA sequencing data"; + license = licenses.asl20; + maintainers = [ maintainers.jbedo ]; + }; +} |