diff options
Diffstat (limited to 'pkgs/development/libraries')
-rw-r--r-- | pkgs/development/libraries/gmp/default.nix | 11 | ||||
-rw-r--r-- | pkgs/development/libraries/science/biology/bioconductor/bioconductor.nix | 43 | ||||
-rw-r--r-- | pkgs/development/libraries/sqlite/default.nix | 6 |
3 files changed, 53 insertions, 7 deletions
diff --git a/pkgs/development/libraries/gmp/default.nix b/pkgs/development/libraries/gmp/default.nix index 48d3446b781..78839f35ad2 100644 --- a/pkgs/development/libraries/gmp/default.nix +++ b/pkgs/development/libraries/gmp/default.nix @@ -1,16 +1,17 @@ -{stdenv, fetchurl, m4, cxx ? true}: +{stdenv, fetchurl, m4, cxx ? true }: stdenv.mkDerivation { - name = "gmp-4.2.2"; + name = "gmp-4.2.3"; src = fetchurl { - url = mirror://gnu/gmp/gmp-4.2.2.tar.bz2; - sha256 = "0yv593sk62ypn21gg2x570g955lmsi4i6f2bc3s43p52myn0lb1b"; + url = mirror://gnu/gmp/gmp-4.2.3.tar.bz2; + sha256 = "139b5abc49833832184c0a03ff6fc64c59ef102b420d2a5884ad78af5647414b"; }; - buildInputs = [m4]; + buildInputs = [m4 stdenv.gcc.libc ]; configureFlags = if cxx then "--enable-cxx" else "--disable-cxx"; doCheck = true; + postBuild = "make check"; # Test the compiler for being correct meta = { description = "A free library for arbitrary precision arithmetic, operating on signed integers, rational numbers, and floating point numbers"; diff --git a/pkgs/development/libraries/science/biology/bioconductor/bioconductor.nix b/pkgs/development/libraries/science/biology/bioconductor/bioconductor.nix new file mode 100644 index 00000000000..d48511cead3 --- /dev/null +++ b/pkgs/development/libraries/science/biology/bioconductor/bioconductor.nix @@ -0,0 +1,43 @@ +{stdenv, fetchurl, rLang}: + +let + + /* Function to compile Bioconductor packages */ + + buildBioConductor = + { pname, pver, src, postInstall ? ""}: + + stdenv.mkDerivation { + name = "${pname}-${pver}"; + + inherit src; + + buildInputs = [rLang]; + + # dontAddPrefix = true; + + # preBuild = "makeFlagsArray=(dictdir=$out/lib/aspell datadir=$out/lib/aspell)"; + + inherit postInstall; + installPhase = '' + R CMD INSTALL ${affyioSrc} + ''; + + meta = { + description = "Bioconductor package for ${pname}"; + }; + }; + +in { + + affyio = buildBioC { + pname = "affyio"; + pver = "1.8.1"; + src = fetchurl { + url = http://www.bioconductor.org/packages/release/bioc/src/contrib/affyio_1.8.1.tar.gz; + sha256 = "136nkpq870vrwf9z5gq32xjzrp8bjfbk9pn8fki2a5w2lr0qc8nh"; + }; + }; + + +} diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix index 087372a6617..b6cede8e148 100644 --- a/pkgs/development/libraries/sqlite/default.nix +++ b/pkgs/development/libraries/sqlite/default.nix @@ -1,4 +1,4 @@ -{stdenv, fetchurl}: +{stdenv, fetchurl, readline}: stdenv.mkDerivation { name = "sqlite-3.5.9"; @@ -9,7 +9,9 @@ stdenv.mkDerivation { url = http://www.sqlite.org/sqlite-3.5.9.tar.gz; sha256 = "0731zj0fnivhfc74wc3yh0p9gn7fpjgy3g79haarciqkdf8k3lvx"; }; - + + buildInputs = [readline]; + meta = { homepage = http://www.sqlite.org/; description = "A self-contained, serverless, zero-configuration, transactional SQL database engine"; |