diff options
Diffstat (limited to 'pkgs/applications/science')
17 files changed, 228 insertions, 53 deletions
diff --git a/pkgs/applications/science/biology/flywheel-cli/default.nix b/pkgs/applications/science/biology/flywheel-cli/default.nix index 7d74b51f606..254a3c011d2 100644 --- a/pkgs/applications/science/biology/flywheel-cli/default.nix +++ b/pkgs/applications/science/biology/flywheel-cli/default.nix @@ -5,7 +5,7 @@ }: let - inherit (stdenv.targetPlatform) system; + inherit (stdenv.hostPlatform) system; throwSystem = throw "Unsupported system: ${system}"; os = { diff --git a/pkgs/applications/science/chemistry/apbs/default.nix b/pkgs/applications/science/chemistry/apbs/default.nix index f4a2bab4243..228c77ee5c0 100644 --- a/pkgs/applications/science/chemistry/apbs/default.nix +++ b/pkgs/applications/science/chemistry/apbs/default.nix @@ -33,6 +33,10 @@ let "-DBUILD_SUPERLU=OFF" ]; + env = lib.optionalAttrs stdenv.cc.isClang { + NIX_CFLAGS_COMPILE = "-Wno-error=implicit-int"; + }; + buildInputs = [ blas superlu @@ -92,6 +96,10 @@ stdenv.mkDerivation (finalAttrs: { "-DENABLE_TESTS=1" ]; + env = lib.optionalAttrs stdenv.cc.isClang { + NIX_CFLAGS_COMPILE = "-Wno-error=incompatible-function-pointer-types"; + }; + doCheck = true; meta = with lib; { diff --git a/pkgs/applications/science/chemistry/gwyddion/default.nix b/pkgs/applications/science/chemistry/gwyddion/default.nix index 89fb3534c60..5794d7077af 100644 --- a/pkgs/applications/science/chemistry/gwyddion/default.nix +++ b/pkgs/applications/science/chemistry/gwyddion/default.nix @@ -12,7 +12,7 @@ zlibSupport ? true, zlib, libuniqueSupport ? true, libunique, libpngSupport ? true, libpng, - openglSupport ? !stdenv.isDarwin + openglSupport ? !stdenv.isDarwin, libGL }: let @@ -31,7 +31,7 @@ stdenv.mkDerivation rec { buildInputs = with lib; [ gtk2 fftw ] ++ - optional openglSupport gnome2.gtkglext ++ + optionals openglSupport [ gnome2.gtkglext libGL ] ++ optional openexrSupport openexr ++ optional libXmuSupport xorg.libXmu ++ optional fitsSupport cfitsio ++ diff --git a/pkgs/applications/science/electronics/kicad/addons/default.nix b/pkgs/applications/science/electronics/kicad/addons/default.nix new file mode 100644 index 00000000000..5170e7efce3 --- /dev/null +++ b/pkgs/applications/science/electronics/kicad/addons/default.nix @@ -0,0 +1,5 @@ +{ kicad }: +{ + kikit = kicad.callPackage ./kikit.nix { addonName = "kikit"; }; + kikit-library = kicad.callPackage ./kikit.nix { addonName = "kikit-library"; }; +} diff --git a/pkgs/applications/science/electronics/kicad/addons/kikit.nix b/pkgs/applications/science/electronics/kicad/addons/kikit.nix new file mode 100644 index 00000000000..6e5fc5ad967 --- /dev/null +++ b/pkgs/applications/science/electronics/kicad/addons/kikit.nix @@ -0,0 +1,52 @@ +# For building the multiple addons that are in the kikit repo. +{ stdenv +, bc +, kikit +, zip +, python3 +, addonName +, addonPath +}: +let + # This python is only used when building the package, it's not the python + # environment that will ultimately run the code packaged here. The python env defined + # in KiCad will import the python code packaged here when KiCad starts up. + python = python3.withPackages (ps: with ps; [ click ]); + kikit-module = python3.pkgs.toPythonModule (kikit.override { inherit python3; }); + + # The following different addons can be built from the same source. + targetSpecs = { + "kikit" = { + makeTarget = "pcm-kikit"; + resultZip = "pcm-kikit.zip"; + description = "KiCad plugin and a CLI tool to automate several tasks in a standard KiCad workflow"; + }; + "kikit-library" = { + makeTarget = "pcm-lib"; + resultZip = "pcm-kikit-lib.zip"; + description = "KiKit uses these symbols and footprints to annotate your boards (e.g., to place a tab in a panel)."; + }; + }; + targetSpec = targetSpecs.${addonName}; +in +stdenv.mkDerivation { + name = "kicadaddon-${addonName}"; + inherit (kikit-module) src version; + + nativeBuildInputs = [ python bc zip ]; + propagatedBuildInputs = [ kikit-module ]; + + buildPhase = '' + patchShebangs scripts/setJson.py + make ${targetSpec.makeTarget} + ''; + + installPhase = '' + mkdir $out + mv build/${targetSpec.resultZip} $out/${addonPath} + ''; + + meta = kikit-module.meta // { + description = targetSpec.description; + }; +} diff --git a/pkgs/applications/science/electronics/kicad/base.nix b/pkgs/applications/science/electronics/kicad/base.nix index 3403e410cf8..a2e5bbe72a5 100644 --- a/pkgs/applications/science/electronics/kicad/base.nix +++ b/pkgs/applications/science/electronics/kicad/base.nix @@ -69,6 +69,8 @@ stdenv.mkDerivation rec { patches = [ # upstream issue 12941 (attempted to upstream, but appreciably unacceptable) ./writable.patch + # https://gitlab.com/kicad/code/kicad/-/issues/15687 + ./runtime_stock_data_path.patch ]; # tagged releases don't have "unknown" diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index a49c813036d..c6c66839e4b 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -1,4 +1,6 @@ { lib, stdenv +, runCommand +, newScope , fetchFromGitLab , gnome , dconf @@ -11,6 +13,8 @@ , callPackages , librsvg , cups +, unzip +, jq , pname ? "kicad" , stable ? true @@ -18,6 +22,7 @@ , libngspice , withScripting ? true , python3 +, addons ? [ ] , debug ? false , sanitizeAddress ? false , sanitizeThreads ? false @@ -27,6 +32,14 @@ , symlinkJoin }: +# `addons`: https://dev-docs.kicad.org/en/addons/ +# +# ```nix +# kicad = pkgs.kicad.override { +# addons = with pkgs.kicadAddons; [ kikit kikit-library ]; +# }; +# ``` + # The `srcs` parameter can be used to override the kicad source code # and all libraries, which are otherwise inaccessible # to overlays since most of the kicad build expression has been @@ -106,6 +119,32 @@ let wxGTK = wxGTK32; python = python3; wxPython = python.pkgs.wxPython_4_2; + addonPath = "addon.zip"; + addonsDrvs = map (pkg: pkg.override { inherit addonPath python3; }) addons; + + addonsJoined = + runCommand "addonsJoined" + { + inherit addonsDrvs; + nativeBuildInputs = [ unzip jq ]; + } '' + mkdir $out + + for pkg in $addonsDrvs; do + unzip $pkg/addon.zip -d unpacked + + folder_name=$(jq .identifier unpacked/metadata.json --raw-output | tr . _) + for d in unpacked/*; do + if [ -d "$d" ]; then + dest=$out/share/kicad/scripting/$(basename $d)/$folder_name + mkdir -p $(dirname $dest) + + mv $d $dest + fi + done + rm -r unpacked + done + ''; inherit (lib) concatStringsSep flatten optionalString optionals; in @@ -113,6 +152,7 @@ stdenv.mkDerivation rec { # Common libraries, referenced during runtime, via the wrapper. passthru.libraries = callPackages ./libraries.nix { inherit libSrc; }; + passthru.callPackage = newScope { inherit addonPath python3; }; base = callPackage ./base.nix { inherit stable baseName; inherit kicadSrc kicadVersion; @@ -131,7 +171,7 @@ stdenv.mkDerivation rec { dontFixup = true; pythonPath = optionals (withScripting) - [ wxPython python.pkgs.six python.pkgs.requests ]; + [ wxPython python.pkgs.six python.pkgs.requests ] ++ addonsDrvs; nativeBuildInputs = [ makeWrapper ] ++ optionals (withScripting) @@ -164,6 +204,17 @@ stdenv.mkDerivation rec { "--set-default KICAD7_SYMBOL_DIR ${symbols}/share/kicad/symbols" "--set-default KICAD7_TEMPLATE_DIR ${template_dir}" ] + ++ optionals (addons != [ ]) ( + let stockDataPath = symlinkJoin { + name = "kicad_stock_data_path"; + paths = [ + "${base}/share/kicad" + "${addonsJoined}/share/kicad" + ]; + }; + in + [ "--set-default NIX_KICAD7_STOCK_DATA_PATH ${stockDataPath}" ] + ) ++ optionals (with3d) [ "--set-default KICAD7_3DMODEL_DIR ${packages3d}/share/kicad/3dmodels" diff --git a/pkgs/applications/science/electronics/kicad/runtime_stock_data_path.patch b/pkgs/applications/science/electronics/kicad/runtime_stock_data_path.patch new file mode 100644 index 00000000000..16f7e493c62 --- /dev/null +++ b/pkgs/applications/science/electronics/kicad/runtime_stock_data_path.patch @@ -0,0 +1,15 @@ +diff --git a/common/paths.cpp b/common/paths.cpp +index a74cdd9..790cc58 100644 +--- a/common/paths.cpp ++++ b/common/paths.cpp +@@ -151,6 +151,10 @@ wxString PATHS::GetStockDataPath( bool aRespectRunFromBuildDir ) + { + wxString path; + ++ if( wxGetEnv( wxT( "NIX_KICAD7_STOCK_DATA_PATH" ), &path ) ) { ++ return path; ++ } ++ + if( aRespectRunFromBuildDir && wxGetEnv( wxT( "KICAD_RUN_FROM_BUILD_DIR" ), nullptr ) ) + { + // Allow debugging from build dir by placing relevant files/folders in the build root diff --git a/pkgs/applications/science/electronics/picoscope/sources.json b/pkgs/applications/science/electronics/picoscope/sources.json index 15a748dc7ce..6b1d81978b9 100644 --- a/pkgs/applications/science/electronics/picoscope/sources.json +++ b/pkgs/applications/science/electronics/picoscope/sources.json @@ -1,69 +1,69 @@ { "x86_64-linux": { "libpicocv": { - "sha256": "feddc1cb9082005e80c4e2c2732ee4c537915c463ea327aa53a642aab95b8691", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicocv/libpicocv_1.1.33-beta2r167_amd64.deb", - "version": "1.1.33-beta2r167" + "sha256": "c0c5bec33c2c7fdd0f26b035ed942175f87012e33d6764c3abf1da31b5626037", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicocv/libpicocv_1.1.34-beta2r172_amd64.deb", + "version": "1.1.34-beta2r172" }, "libpicoipp": { - "sha256": "2d749b8fd5dbd811c270e4aa78c5ee9cd33832b90d089ae386b0f85aed2d0204", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicoipp/libpicoipp_1.4.0-4r136_amd64.deb", - "version": "1.4.0-4r136" + "sha256": "4a84f0af7f4e8cba91fad620eac0cd23c36b2fdda4637904be564286b10ffe1d", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libpicoipp/libpicoipp_1.4.0-4r161_amd64.deb", + "version": "1.4.0-4r161" }, "libps2000": { - "sha256": "d306890d1e87651ae83ef00143c8e62b82fae2be39886b6884408751cb910fa4", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000/libps2000_3.0.89-3r3163_amd64.deb", - "version": "3.0.89-3r3163" + "sha256": "473b065e79a7414c1e2b8c8468c8d2654333ac28f3a8c33b535626b33c60d2ca", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000/libps2000_3.0.127-3r5552_amd64.deb", + "version": "3.0.127-3r5552" }, "libps2000a": { - "sha256": "38391dfbe6c6c04ba5b5c99bd53404d5342e40c9eca703e3d95cbc6302114270", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000a/libps2000a_2.1.89-5r3163_amd64.deb", - "version": "2.1.89-5r3163" + "sha256": "8eba0052f9c7ef327710f2fba5aa11bec0c20225b39d77bb7b69cf80055c039c", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps2000a/libps2000a_2.1.127-5r5552_amd64.deb", + "version": "2.1.127-5r5552" }, "libps3000": { - "sha256": "39b4b56a839eb5d7abcf1de2bab472c2de2d8aa5ffc3ba445e99d5aa8178ba07", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000/libps3000_4.0.89-3r3163_amd64.deb", - "version": "4.0.89-3r3163" + "sha256": "4e786036b8de0dd0f922aed947f30a53d31bed46b2df5132e8c9480c8a5d93e9", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000/libps3000_4.0.127-3r5552_amd64.deb", + "version": "4.0.127-3r5552" }, "libps3000a": { - "sha256": "ea96735b90d02c72c9c7b517413fed0d366ac634100e22467a39c780985669e4", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000a/libps3000a_2.1.89-6r3163_amd64.deb", - "version": "2.1.89-6r3163" + "sha256": "d2bb1e5bb151b0953ed30ca5421bb93d05dab898c33cdc89927e943ea991867a", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps3000a/libps3000a_2.1.127-6r5552_amd64.deb", + "version": "2.1.127-6r5552" }, "libps4000": { - "sha256": "7177cd4debf811fa7d7105703a4fc546fe1a79fc3275e3f36326b014c1334f55", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000/libps4000_2.1.89-2r3163_amd64.deb", - "version": "2.1.89-2r3163" + "sha256": "4c127e67949835b5ab5c5c8caa55f73c69df354d761aa53d6df99c8f8ac39009", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000/libps4000_2.1.127-2r5552_amd64.deb", + "version": "2.1.127-2r5552" }, "libps4000a": { - "sha256": "ebe94d6d9f349e5082dcbed55d059ac77c0129b967467786d1cef3f662ebac99", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000a/libps4000a_2.1.89-2r3163_amd64.deb", - "version": "2.1.89-2r3163" + "sha256": "26df82bc946e5bb30d599c4c365247bdbaa01e830d4d00630b46a6abcc1eef04", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps4000a/libps4000a_2.1.127-2r5552_amd64.deb", + "version": "2.1.127-2r5552" }, "libps5000": { - "sha256": "732164658acb4bdfdbf3fc785419ea6a4944ed2892be9dde134b345a976c3318", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000/libps5000_2.1.89-3r3163_amd64.deb", - "version": "2.1.89-3r3163" + "sha256": "106ef17862e98c3621f95c377f271c843664f481f84ef918d9eadd013561cd1b", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000/libps5000_2.1.127-3r5552_amd64.deb", + "version": "2.1.127-3r5552" }, "libps5000a": { - "sha256": "3438f51c8646e3ac5a479c88aa7a89b3dfcce2090720317b4efb8db538372cdb", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000a/libps5000a_2.1.89-5r3163_amd64.deb", - "version": "2.1.89-5r3163" + "sha256": "fe9def134ef9df6654485911f14ece7b2ee3d79113aeee7826dd6e36bb5de3b4", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps5000a/libps5000a_2.1.127-5r5552_amd64.deb", + "version": "2.1.127-5r5552" }, "libps6000": { - "sha256": "fe4165ab0d323728b473347b61439b074486809d673e47f169d0062cf917191c", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000/libps6000_2.1.89-6r3163_amd64.deb", - "version": "2.1.89-6r3163" + "sha256": "9b08c5b7fb2d34b0e2e98f2e0452a59105f612cd445a9e45d3cac14d931d18f2", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000/libps6000_2.1.127-6r5552_amd64.deb", + "version": "2.1.127-6r5552" }, "libps6000a": { - "sha256": "0552811f92a015ef47b09947631f5f5d8c30b122425de083bea79df88957a9c7", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000a/libps6000a_1.0.89-0r3163_amd64.deb", - "version": "1.0.89-0r3163" + "sha256": "2a23ccad72b9be83b87d449b6bb8ded23fd29c85ec9f78a45b6d45b38ccf335b", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/libp/libps6000a/libps6000a_1.0.127-0r5552_amd64.deb", + "version": "1.0.127-0r5552" }, "picoscope": { - "sha256": "b060edb02bc2de5d10a45d31d4b7f9c767d18511e2f65a1ebdd70cc3e8780262", - "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/p/picoscope/picoscope_7.0.100-1r11387_amd64.deb", - "version": "7.0.100-1r11387" + "sha256": "d95f269171da7273b596dae95452789e889f12ef0f15c3baea26dd1b3a8117fc", + "url": "https://labs.picotech.com/rc/picoscope7/debian/pool/main/p/picoscope/picoscope_7.1.17-1r17318_amd64.deb", + "version": "7.1.17-1r17318" } } } diff --git a/pkgs/applications/science/electronics/verilog/default.nix b/pkgs/applications/science/electronics/verilog/default.nix index 0a93759947d..06e8a94a4c5 100644 --- a/pkgs/applications/science/electronics/verilog/default.nix +++ b/pkgs/applications/science/electronics/verilog/default.nix @@ -44,6 +44,10 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + env = lib.optionalAttrs stdenv.isDarwin { + NIX_CFLAGS_COMPILE = "-Wno-error=implicit-function-declaration"; + }; + # NOTE(jleightcap): the `make check` target only runs a "Hello, World"-esque sanity check. # the tests in the doInstallCheck phase run a full regression test suite. # however, these tests currently fail upstream on aarch64 diff --git a/pkgs/applications/science/logic/aiger/default.nix b/pkgs/applications/science/logic/aiger/default.nix index 4f3f585c220..5b9e8f62aa0 100644 --- a/pkgs/applications/science/logic/aiger/default.nix +++ b/pkgs/applications/science/logic/aiger/default.nix @@ -9,6 +9,11 @@ stdenv.mkDerivation rec { sha256 = "1ish0dw0nf9gyghxsdhpy1jjiy5wp54c993swp85xp7m6vdx6l0y"; }; + patches = [ + # Fix implicit declaration of `isatty`, which is an error with newer versions of clang. + ./fix-missing-header.patch + ]; + enableParallelBuilding = true; configurePhase = '' diff --git a/pkgs/applications/science/logic/aiger/fix-missing-header.patch b/pkgs/applications/science/logic/aiger/fix-missing-header.patch new file mode 100644 index 00000000000..5f0101bd7a0 --- /dev/null +++ b/pkgs/applications/science/logic/aiger/fix-missing-header.patch @@ -0,0 +1,11 @@ +diff -ur a/aigunconstraint.c b/aigunconstraint.c +--- a/aigunconstraint.c 2013-10-06 09:08:03.000000000 -0400 ++++ b/aigunconstraint.c 2023-10-27 08:55:01.678566389 -0400 +@@ -26,6 +26,7 @@ + #include <stdarg.h> + #include <stdlib.h> + #include <string.h> ++#include <unistd.h> + + static const char * USAGE = + "usage: aigunconstraint [-h][-v] [<input> [<output>]]\n" diff --git a/pkgs/applications/science/logic/eprover/default.nix b/pkgs/applications/science/logic/eprover/default.nix index a79b74740e6..ec1fc6b11d2 100644 --- a/pkgs/applications/science/logic/eprover/default.nix +++ b/pkgs/applications/science/logic/eprover/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz"; - sha256 = "sha256-RJ2uc/GIWU/fDJijSzYS8GdL7zUkeExOLWXtTbi8ZLk="; + hash = "sha256-gBgDC+GH948JMsjzo/SOpWDzJXu0g58YX1VW28PeorI="; }; buildInputs = [ which ]; diff --git a/pkgs/applications/science/logic/vampire/default.nix b/pkgs/applications/science/logic/vampire/default.nix index 253c88705ae..a3c1aa3f131 100644 --- a/pkgs/applications/science/logic/vampire/default.nix +++ b/pkgs/applications/science/logic/vampire/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { # https://github.com/vprover/vampire/pull/54 (fetchpatch { name = "fix-apple-cygwin-defines.patch"; - url = "https://github.com/vprover/vampire/pull/54.patch"; + url = "https://github.com/vprover/vampire/commit/b4bddd3bcac6a7688742da75c369b7b3213f6d1c.patch"; sha256 = "0i6nrc50wlg1dqxq38lkpx4rmfb3lf7s8f95l4jkvqp0nxa20cza"; }) # https://github.com/vprover/vampire/pull/55 (fetchpatch { name = "fix-wait-any.patch"; - url = "https://github.com/vprover/vampire/pull/55.patch"; + url = "https://github.com/vprover/vampire/commit/6da10eabb333aec54cdf13833ea33cb851159543.patch"; sha256 = "1pwfpwpl23bqsgkmmvw6bnniyvp5j9v8l3z9s9pllfabnfcrcz9l"; }) ]; diff --git a/pkgs/applications/science/math/eigenmath/default.nix b/pkgs/applications/science/math/eigenmath/default.nix index 603a3c4f60b..1e80d9a06eb 100644 --- a/pkgs/applications/science/math/eigenmath/default.nix +++ b/pkgs/applications/science/math/eigenmath/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "eigenmath"; - version = "unstable-2023-10-26"; + version = "unstable-2023-11-17"; src = fetchFromGitHub { owner = "georgeweigt"; repo = pname; - rev = "043895fbaed27a4baace7c7c0c1f69ea5a9f3d1a"; - hash = "sha256-roPyRaT89I3HbyvBK/owiigMus1EeKEhhKHFsgfzp10="; + rev = "b0d822f10243ad5b1c88efb5a82b43a0bbf1bfbc"; + hash = "sha256-eJ/EmzV5UZGxwZNIna/XXkYY+vkLc610KcywBFPRfyM="; }; checkPhase = let emulator = stdenv.hostPlatform.emulator buildPackages; in '' diff --git a/pkgs/applications/science/math/readstat/default.nix b/pkgs/applications/science/math/readstat/default.nix index efbf80ba16e..08555d12640 100644 --- a/pkgs/applications/science/math/readstat/default.nix +++ b/pkgs/applications/science/math/readstat/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, libiconv }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, pkg-config, libiconv }: stdenv.mkDerivation rec { pname = "readstat"; @@ -11,6 +11,13 @@ stdenv.mkDerivation rec { sha256 = "sha256-4lRJgZPB2gfaQ9fQKvDDpGhy1eDNT/nT1QmeZlCmCis="; }; + patches = [ + (fetchpatch { + url = "https://github.com/WizardMac/ReadStat/commit/211c342a1cfe46fb7fb984730dd7a29ff4752f35.patch"; + hash = "sha256-nkaEgusylVu7NtzSzBklBuOnqO9qJPovf0qn9tTE6ls="; + }) + ]; + nativeBuildInputs = [ pkg-config autoreconfHook ]; buildInputs = [ libiconv ]; @@ -22,5 +29,6 @@ stdenv.mkDerivation rec { description = "Command-line tool (+ C library) for converting SAS, Stata, and SPSS files"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ swflint ]; + platforms = lib.platforms.all; }; } diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index 8064a965bd1..97754c04d95 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -104,11 +104,11 @@ stdenv.mkDerivation rec { sha256 = "sha256-GqMgoi0tsP7zcCcPumhdsbvhPB6fgw1ufx6gHlc6iSc="; }) - # https://github.com/sagemath/sage/pull/36006, positively reviewed + # https://github.com/sagemath/sage/pull/36006, landed in 10.2.beta2 (fetchpatch { name = "gmp-6.3-upgrade.patch"; - url = "https://github.com/sagemath/sage/commit/d88bc3815c0901bfdeaa3e4a31107c084199f614.diff"; - sha256 = "sha256-dXaEwk2wXxmx02sCw4Vu9mF0ZrydhFD4LRwNAiQsPgM="; + url = "https://github.com/sagemath/sage/commit/5e841de46c3baa99cd1145b36ff9163e9340a55c.diff"; + sha256 = "sha256-fJPDryLtGBQz9qHDiCkBwjiW2lN6v7HiHgxY7CTeHcs="; }) # https://github.com/sagemath/sage/pull/36279, landed in 10.2.beta4 @@ -117,6 +117,20 @@ stdenv.mkDerivation rec { url = "https://github.com/sagemath/sage/commit/0fcf88935908440930c5f79202155aca4ad57518.diff"; sha256 = "sha256-mvqAHaTCXsxPv901L8HSTnrfghfXYdq0wfLoP/cYQZI="; }) + + # https://github.com/sagemath/sage/pull/35658, landed in 10.1.beta2 + (fetchpatch { + name = "sphinx-7-upgrade.patch"; + url = "https://github.com/sagemath/sage/commit/cacd9a89b5c4fdcf84a8dd2b7d5bdc10cc78109a.diff"; + sha256 = "sha256-qJvliTJjR3XBc5pH6Q0jtm8c4bhtZcTcF3O04Ro1uaU="; + }) + + # https://github.com/sagemath/sage/pull/36296, landed in 10.2.beta4 + (fetchpatch { + name = "duplicate-args-region_plot.patch"; + url = "https://github.com/sagemath/sage/commit/461727b453712550a2c5dc0ae11933523255aaed.diff"; + sha256 = "sha256-mC8084VQoUBk4hocALF+Y9Cwb38Zt360eldi/SSjna8="; + }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; |