diff options
Diffstat (limited to 'pkgs/applications/science')
20 files changed, 144 insertions, 105 deletions
diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix index aa6c95071b7..bc4f1677fc9 100644 --- a/pkgs/applications/science/biology/igv/default.nix +++ b/pkgs/applications/science/biology/igv/default.nix @@ -1,32 +1,34 @@ -{ stdenv, fetchurl, unzip, jre }: +{ stdenv, fetchzip, jdk11 }: stdenv.mkDerivation rec { pname = "igv"; - version = "2.4.19"; - - src = fetchurl { - url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip"; - sha256 = "048dgrhxcb854d24kyjkqz12bw04bsv49i5jawb75yzkswwfkb0z"; + version = "2.8.9"; + src = fetchzip { + url = "https://data.broadinstitute.org/igv/projects/downloads/2.8/IGV_${version}.zip"; + sha256 = "1874w1xprv91caz1ymfxilq6inhj36xzx8j9m0mcyp0qfvfvyjp7"; }; - buildInputs = [ unzip jre ]; - installPhase = '' mkdir -pv $out/{share,bin} cp -Rv * $out/share/ sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igv.sh - sed -i 's#java#${jre}/bin/java#g' $out/share/igv.sh + sed -i 's#java#${jdk11}/bin/java#g' $out/share/igv.sh + + sed -i "s#prefix=.*#prefix=$out/share#g" $out/share/igvtools + sed -i 's#java#${jdk11}/bin/java#g' $out/share/igvtools ln -s $out/share/igv.sh $out/bin/igv + ln -s $out/share/igvtools $out/bin/igvtools chmod +x $out/bin/igv + chmod +x $out/bin/igvtools ''; meta = with stdenv.lib; { homepage = "https://www.broadinstitute.org/igv/"; description = "A visualization tool for interactive exploration of genomic datasets"; - license = licenses.lgpl21; + license = licenses.mit; platforms = platforms.unix; maintainers = [ maintainers.mimame ]; }; diff --git a/pkgs/applications/science/chemistry/marvin/default.nix b/pkgs/applications/science/chemistry/marvin/default.nix index 88a55b52b5c..e8cd077afd2 100644 --- a/pkgs/applications/science/chemistry/marvin/default.nix +++ b/pkgs/applications/science/chemistry/marvin/default.nix @@ -4,12 +4,12 @@ with stdenv.lib; stdenv.mkDerivation rec { pname = "marvin"; - version = "20.16.0"; + version = "20.17.0"; src = fetchurl { name = "marvin-${version}.deb"; url = "http://dl.chemaxon.com/marvin/${version}/marvin_linux_${versions.majorMinor version}.deb"; - sha256 = "0wfg5zd8dvjy6x6al58jd5d53gar3ds326q3b6771h5p5jzv0x2g"; + sha256 = "0ip6ma9ivk5b74s9najn2rrkiha7hya1rjhgyrc71kwsj5gqgli0"; }; nativeBuildInputs = [ dpkg makeWrapper ]; diff --git a/pkgs/applications/science/electronics/kicad/base.nix b/pkgs/applications/science/electronics/kicad/base.nix index b7ab5fa70d9..2fd4c122041 100644 --- a/pkgs/applications/science/electronics/kicad/base.nix +++ b/pkgs/applications/science/electronics/kicad/base.nix @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { i18n = libraries.i18n; pname = "kicad-base"; - version = "${versions.${baseName}.kicadVersion.version}"; + version = "${builtins.substring 0 10 versions.${baseName}.kicadVersion.src.rev}"; src = fetchFromGitLab ( { diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix index a8340a2c22c..e5ce1f0092e 100644 --- a/pkgs/applications/science/electronics/kicad/default.nix +++ b/pkgs/applications/science/electronics/kicad/default.nix @@ -9,7 +9,7 @@ , oceSupport ? false, opencascade , withOCCT ? true, opencascade-occt , ngspiceSupport ? true, libngspice -, scriptingSupport ? false, swig, python3 +, scriptingSupport ? true, swig, python3 , debug ? false, valgrind , with3d ? true , withI18n ? true diff --git a/pkgs/applications/science/electronics/kicad/libraries.nix b/pkgs/applications/science/electronics/kicad/libraries.nix index 4dde2a0a122..91ce30de5f0 100644 --- a/pkgs/applications/science/electronics/kicad/libraries.nix +++ b/pkgs/applications/science/electronics/kicad/libraries.nix @@ -15,7 +15,9 @@ let mkLib = name: stdenv.mkDerivation { pname = "kicad-${name}"; - version = "${version}"; + # Use the revision instead of `version` (which is an ISO 8601 date) + # to prevent duplicating the library when just the date changed + version = "${builtins.substring 0 10 libSources.${name}.rev}"; src = fetchFromGitHub ( { owner = "KiCad"; @@ -50,7 +52,7 @@ in i18n = let name = "i18n"; in stdenv.mkDerivation { pname = "kicad-${name}"; - version = "${version}"; + version = "${builtins.substring 0 10 libSources.${name}.rev}"; src = fetchFromGitLab ( { group = "kicad"; diff --git a/pkgs/applications/science/electronics/kicad/versions.nix b/pkgs/applications/science/electronics/kicad/versions.nix index 7299e8ee907..d001cc43367 100644 --- a/pkgs/applications/science/electronics/kicad/versions.nix +++ b/pkgs/applications/science/electronics/kicad/versions.nix @@ -27,25 +27,25 @@ }; "kicad-unstable" = { kicadVersion = { - version = "2020-07-21"; + version = "2020-08-22"; src = { - rev = "9a801d8b72f24e297a7d9d6e8cee2eef6cab2988"; - sha256 = "0yilmmng7y3rz1bxw2b0s0aqs8hdqr7ach2r45bx8v1f4bih4ka9"; + rev = "a2341f0f335b0abb9fc8cb86d19cbe6f9b38fade"; + sha256 = "0167yb39f800xarq3khn7sbdkgcx9j2ayhy8c7lhhks6kh7459g0"; }; }; libVersion = { - version = "2020-07-21"; + version = "2020-08-22"; libSources = { - i18n.rev = "a311975d139caf8be9848dd613a9800570adc245"; - i18n.sha256 = "1bkn2hhwcg8xdpn9yfm9nnqsg02c1nizhpxd4yhpxgifhh4psz1g"; - symbols.rev = "18572c4c118fe8ef779edf3131eebf2c33c6fa46"; - symbols.sha256 = "0hqx0aznzrnlbdkpsnl8mbs9bdgiv029d6zjh10nyjzcw27q3hxz"; + i18n.rev = "cbbb1efd940094bf0c3168280698b2b059a8c509"; + i18n.sha256 = "1q4jakn6m8smnr2mg7jgb520nrb6fag9mdvlcpx3smp3qbxka818"; + symbols.rev = "9ca6a5348cdeb88e699582d4ed051ff7303b44d3"; + symbols.sha256 = "13w6pb34rhz96rnar25z7kiscy6q1fm8l39hq1bpb8g9yn86ssz4"; templates.rev = "ae16953b81055855bcede4a33305413599d86a15"; templates.sha256 = "1pkv90p3liy3bj4nklxsvpzh9m56p0k5ldr22armvgqfaqaadx9v"; - footprints.rev = "4835f80b4a52256aa7a3eb650e6e0fef33a77d0d"; - footprints.sha256 = "00rc6phxmkry35i0xzry14axvh2akvvkly45s3xxi06vaydaw7i5"; - packages3d.rev = "9b560cf94a35b692ca516d37bdaf392ce10e549d"; - packages3d.sha256 = "0b9jglf77fy0n0r8xs4yqkv6zvipyfvp0z5dnqlzp32csy5aqpi1"; + footprints.rev = "f94c2d5d619d16033f69a555b449f59604d97865"; + footprints.sha256 = "1g71sk77jvqaf9xvgq6dkyvd9pij2lb4n0bn0dqnwddhwam935db"; + packages3d.rev = "f699b0e3c13fe75618086913e39279c85da14cc7"; + packages3d.sha256 = "0m5rb5axa946v729z35ga84in76y4zpk32qzi0hwqx957zy72hs9"; }; }; }; diff --git a/pkgs/applications/science/electronics/openhantek6022/default.nix b/pkgs/applications/science/electronics/openhantek6022/default.nix index 5a70831d824..ad8fa3c7a7a 100644 --- a/pkgs/applications/science/electronics/openhantek6022/default.nix +++ b/pkgs/applications/science/electronics/openhantek6022/default.nix @@ -2,13 +2,13 @@ mkDerivation rec { pname = "openhantek6022"; - version = "3.1.1"; + version = "3.1.2"; src = fetchFromGitHub { owner = "OpenHantek"; repo = "OpenHantek6022"; rev = version; - sha256 = "17b0qmz7g0nk7n7jhbh5xhs135dpj9kv41n42vvpdzwr6z5rk4qm"; + sha256 = "104j7d3i5y6jd20c2z3l10sr6sgdy8iki3g9mlwhddnr8x6nzc03"; }; nativeBuildInputs = [ cmake makeWrapper ]; diff --git a/pkgs/applications/science/electronics/verilator/default.nix b/pkgs/applications/science/electronics/verilator/default.nix index 0613e22bbda..9c59ad3a394 100644 --- a/pkgs/applications/science/electronics/verilator/default.nix +++ b/pkgs/applications/science/electronics/verilator/default.nix @@ -1,22 +1,29 @@ -{ stdenv, fetchurl, perl, flex, bison }: +{ stdenv, fetchurl +, perl, flex, bison +}: stdenv.mkDerivation rec { pname = "verilator"; - version = "4.036"; + version = "4.040"; src = fetchurl { url = "https://www.veripool.org/ftp/${pname}-${version}.tgz"; - sha256 = "1sy02pgq3kvk8548l57hsh08vfbqdg8dghj8mwlybdi8fdjz4z1h"; + sha256 = "1qy0wllsmxva3c838spxwmacxx36r3njxwhgp172m4l3829785bf"; }; enableParallelBuilding = true; - buildInputs = [ perl flex bison ]; + buildInputs = [ perl ]; + nativeBuildInputs = [ flex bison ]; - meta = { + # these tests need some interpreter paths patched early on... + doCheck = false; + checkTarget = "test"; + + meta = with stdenv.lib; { description = "Fast and robust (System)Verilog simulator/compiler"; homepage = "https://www.veripool.org/wiki/verilator"; - license = stdenv.lib.licenses.lgpl3; - platforms = stdenv.lib.platforms.unix; - maintainers = with stdenv.lib.maintainers; [ thoughtpolice ]; + license = licenses.lgpl3; + platforms = platforms.unix; + maintainers = with maintainers; [ thoughtpolice ]; }; } diff --git a/pkgs/applications/science/logic/alt-ergo/default.nix b/pkgs/applications/science/logic/alt-ergo/default.nix index e396f1c4a91..519b1f98138 100644 --- a/pkgs/applications/science/logic/alt-ergo/default.nix +++ b/pkgs/applications/science/logic/alt-ergo/default.nix @@ -2,29 +2,27 @@ let pname = "alt-ergo"; - version = "2.3.2"; + version = "2.3.3"; src = fetchurl { url = "https://alt-ergo.ocamlpro.com/http/alt-ergo-${version}/alt-ergo-${version}.tar.gz"; - sha256 = "130hisjzkaslygipdaaqib92spzx9rapsd45dbh5ssczjn5qnhb9"; + sha256 = "124k2a4ikk4wdpmvgjpgl97x9skvr9qznk8m68dzsynzpv6yksaj"; }; - preConfigure = "patchShebangs ./configure"; - nativeBuildInputs = [ which ]; in let alt-ergo-lib = ocamlPackages.buildDunePackage rec { pname = "alt-ergo-lib"; - inherit version src preConfigure nativeBuildInputs; + inherit version src nativeBuildInputs; configureFlags = pname; propagatedBuildInputs = with ocamlPackages; [ num ocplib-simplex stdlib-shims zarith ]; }; in let alt-ergo-parsers = ocamlPackages.buildDunePackage rec { pname = "alt-ergo-parsers"; - inherit version src preConfigure nativeBuildInputs; + inherit version src nativeBuildInputs; configureFlags = pname; buildInputs = with ocamlPackages; [ menhir ]; propagatedBuildInputs = [ alt-ergo-lib ] ++ (with ocamlPackages; [ camlzip psmt2-frontend ]); @@ -32,7 +30,7 @@ let alt-ergo-parsers = ocamlPackages.buildDunePackage rec { ocamlPackages.buildDunePackage { - inherit pname version src preConfigure nativeBuildInputs; + inherit pname version src nativeBuildInputs; configureFlags = pname; diff --git a/pkgs/applications/science/logic/isabelle/default.nix b/pkgs/applications/science/logic/isabelle/default.nix index d2e49d81783..a12d75eabbe 100644 --- a/pkgs/applications/science/logic/isabelle/default.nix +++ b/pkgs/applications/science/logic/isabelle/default.nix @@ -3,18 +3,18 @@ stdenv.mkDerivation rec { pname = "isabelle"; - version = "2018"; + version = "2020"; dirname = "Isabelle${version}"; src = if stdenv.isDarwin then fetchurl { - url = "http://isabelle.in.tum.de/website-${dirname}/dist/${dirname}.dmg"; - sha256 = "0jwnvsf5whklq14ihaxs7b9nbic94mm56nvxljrdbvl6y628j9r5"; + url = "https://isabelle.in.tum.de/website-${dirname}/dist/${dirname}_macos.tar.gz"; + sha256 = "1sfr5filsaqj93g5y4p9n8g5652dhr4whj25x4lifdxr2pp560xx"; } else fetchurl { url = "https://isabelle.in.tum.de/website-${dirname}/dist/${dirname}_linux.tar.gz"; - sha256 = "1928lwrw1v1p9s23kix30ncpqm8djmrnjixj82f3ni2a8sc3hrsp"; + sha256 = "1bibabhlsvf6qsjjkgxcpq3cvl1z7r8yfcgqbhbvsiv69n3gyfk3"; }; buildInputs = [ perl polyml z3 ] @@ -42,14 +42,14 @@ stdenv.mkDerivation rec { ML_SOURCES="\$POLYML_HOME/src" EOF - cat >contrib/jdk/etc/settings <<EOF + cat >contrib/jdk*/etc/settings <<EOF ISABELLE_JAVA_PLATFORM=${stdenv.system} ISABELLE_JDK_HOME=${java} EOF echo ISABELLE_LINE_EDITOR=${rlwrap}/bin/rlwrap >>etc/settings - for comp in contrib/jdk contrib/polyml-* contrib/z3-*; do + for comp in contrib/jdk* contrib/polyml-* contrib/z3-*; do rm -rf $comp/x86* done '' + (if ! stdenv.isLinux then "" else '' @@ -66,7 +66,7 @@ stdenv.mkDerivation rec { bin/isabelle install $out/bin ''; - meta = { + meta = with stdenv.lib; { description = "A generic proof assistant"; longDescription = '' @@ -74,9 +74,9 @@ stdenv.mkDerivation rec { to be expressed in a formal language and provides tools for proving those formulas in a logical calculus. ''; - homepage = "http://isabelle.in.tum.de/"; - license = "LGPL"; - maintainers = [ stdenv.lib.maintainers.jwiegley ]; - platforms = stdenv.lib.platforms.linux; + homepage = "https://isabelle.in.tum.de/"; + license = licenses.bsd3; + maintainers = [ maintainers.jwiegley ]; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/science/logic/lean/default.nix b/pkgs/applications/science/logic/lean/default.nix index 224795f2a66..32a75cabc13 100644 --- a/pkgs/applications/science/logic/lean/default.nix +++ b/pkgs/applications/science/logic/lean/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "lean"; - version = "3.18.4"; + version = "3.19.0"; src = fetchFromGitHub { owner = "leanprover-community"; repo = "lean"; rev = "v${version}"; - sha256 = "1pmc2wi1pa346w89ayrrjv9xk6v6myg2zmx1wj4pd9qxv7ivrbsn"; + sha256 = "1dybq6104vc62x620izgblfd8dqc4ynaiw8ml07km78lq38anm6v"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/logic/mcy/default.nix b/pkgs/applications/science/logic/mcy/default.nix index bbdcacf2b50..eba910e07eb 100644 --- a/pkgs/applications/science/logic/mcy/default.nix +++ b/pkgs/applications/science/logic/mcy/default.nix @@ -7,13 +7,13 @@ let in stdenv.mkDerivation { pname = "mcy"; - version = "2020.07.06"; + version = "2020.08.03"; src = fetchFromGitHub { owner = "YosysHQ"; repo = "mcy"; - rev = "6e8433ed9acbface5e080719110a957d89d849df"; - sha256 = "1vbzg0rgmf7kp735m6p4msxc51vpsrdwk24ir7z0zxsb8lv53gg7"; + rev = "62048e69df13f8e03670424626755ae8ef4c36ff"; + sha256 = "15xxgzx1zxzx5kshqyrxnfx33cz6cjzxcdcn6z98jhs9bwyvf96f"; }; buildInputs = [ python ]; diff --git a/pkgs/applications/science/logic/symbiyosys/default.nix b/pkgs/applications/science/logic/symbiyosys/default.nix index b3ae4580256..9cf8b0845d4 100644 --- a/pkgs/applications/science/logic/symbiyosys/default.nix +++ b/pkgs/applications/science/logic/symbiyosys/default.nix @@ -1,20 +1,20 @@ { stdenv, fetchFromGitHub , bash, python3, yosys -, yices, boolector, aiger +, yices, boolector, z3, aiger }: stdenv.mkDerivation { pname = "symbiyosys"; - version = "2020.07.03"; + version = "2020.08.22"; src = fetchFromGitHub { owner = "YosysHQ"; repo = "SymbiYosys"; - rev = "06e80194c77f5cc38c6999b1d3047a2d6ca82e15"; - sha256 = "1hl03qy98pgq24ijyimf9pf7qxp42l7cki66wx48jys4m1s6n8v9"; + rev = "33b0bb7d836fe2a73dc7b10587222f2a718beef4"; + sha256 = "03rbrbwsji1sqcp2yhgbc0fca04zsryv2g4izjhdzv64nqjzjyhn"; }; - buildInputs = [ python3 ]; + buildInputs = [ ]; patchPhase = '' patchShebangs . @@ -26,14 +26,15 @@ stdenv.mkDerivation { # Fix various executable references substituteInPlace sbysrc/sby_core.py \ --replace '"/usr/bin/env", "bash"' '"${bash}/bin/bash"' \ - --replace ': "btormc"' ': "${boolector}/bin/btormc"' \ - --replace ': "yosys"' ': "${yosys}/bin/yosys"' \ - --replace ': "yosys-smtbmc"' ': "${yosys}/bin/yosys-smtbmc"' \ - --replace ': "yosys-abc"' ': "${yosys}/bin/yosys-abc"' \ - --replace ': "aigbmc"' ': "${aiger}/bin/aigbmc"' \ + --replace ', "btormc"' ', "${boolector}/bin/btormc"' \ + --replace ', "aigbmc"' ', "${aiger}/bin/aigbmc"' + + substituteInPlace sbysrc/sby_core.py \ + --replace '##yosys-program-prefix##' '"${yosys}/bin/"' ''; buildPhase = "true"; + installPhase = '' mkdir -p $out/bin $out/share/yosys/python3 @@ -43,6 +44,10 @@ stdenv.mkDerivation { chmod +x $out/bin/sby ''; + doCheck = false; # not all provers are yet packaged... + checkInputs = [ python3 yosys boolector yices z3 aiger ]; + checkPhase = "make test"; + meta = { description = "Tooling for Yosys-based verification flows"; homepage = "https://symbiyosys.readthedocs.io/"; diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 52da3b4a1ac..717b240c1cc 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -12,11 +12,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { - name = "R-4.0.0"; + name = "R-4.0.2"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-4/${name}.tar.gz"; - sha256 = "0h1995smlyiyhx7gpg9paxsfqrcn6g9bbp5h9r47i6an3clv1gh6"; + sha256 = "0xdy3dy2bzdiba8z94hjykyra8si8a5q15s0bri7c26scjrymg6k"; }; dontUseImakeConfigure = true; diff --git a/pkgs/applications/science/math/mathematica/l10ns.nix b/pkgs/applications/science/math/mathematica/l10ns.nix index c75c91be059..8ec6ac5048d 100644 --- a/pkgs/applications/science/math/mathematica/l10ns.nix +++ b/pkgs/applications/science/math/mathematica/l10ns.nix @@ -8,6 +8,12 @@ let allVersions = with lib; flip map # N.B. Versions in this list should be ordered from newest to oldest. [ { + version = "12.1.1"; + lang = "en"; + language = "English"; + sha256 = "02mk8gmv8idnakva1nc7r7mx8ld02lk7jgsj1zbn962aps3bhixd"; + } + { version = "12.1.0"; lang = "en"; language = "English"; diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix index 002acbf3875..9d14df5a798 100644 --- a/pkgs/applications/science/math/nasc/default.nix +++ b/pkgs/applications/science/math/nasc/default.nix @@ -1,7 +1,9 @@ { stdenv , fetchFromGitHub -, fetchpatch , pkgconfig +, python3 +, meson +, ninja , vala , gtk3 , glib @@ -9,52 +11,67 @@ , libsoup , gtksourceview , libgee -, cmake +, nix-update-script +, webkitgtk , libqalculate -, cln +, intltool +, gnuplot , wrapGAppsHook }: stdenv.mkDerivation rec { pname = "nasc"; - version = "0.5.4"; + version = "0.7.5"; src = fetchFromGitHub { owner = "parnold-x"; repo = pname; rev = version; - sha256 = "036v3dx8yasp19j88lflibqnpfi5d0nk7qkcnr80zn1lvawf4wgn"; + sha256 = "kSRc5RLkI6SBJirUYw6swZi8IJhaL3y74b2Zw8kh2XA="; + fetchSubmodules = true; }; - patches = [ - # fix build with gcc9 - (fetchpatch { - url = "https://github.com/parnold-x/nasc/commit/46b9b80e228b6b86001bded45d85e073a9411549.patch"; - sha256 = "1sm2aw0xhw2chk036r231nmp2f2ypxcmzggwljkn7wfzgg3h1mx3"; - }) - ]; - nativeBuildInputs = [ - cmake - vala + glib # post_install.py + gtk3 # post_install.py + intltool # for libqalculate + meson + ninja pkgconfig + python3 + vala wrapGAppsHook ]; buildInputs = [ - cln - libsoup - gtk3 glib + gtk3 gtksourceview libgee - libqalculate pantheon.elementary-icon-theme pantheon.granite - ]; + webkitgtk + # We add libqalculate's runtime dependencies because nasc has it as a modified subproject. + ] ++ libqalculate.buildInputs ++ libqalculate.propagatedBuildInputs; + + postPatch = '' + chmod +x meson/post_install.py + patchShebangs meson/post_install.py + + # patch subproject. same code in libqalculate expression + substituteInPlace subprojects/libqalculate/libqalculate/Calculator-plot.cc \ + --replace 'commandline = "gnuplot"' 'commandline = "${gnuplot}/bin/gnuplot"' \ + --replace '"gnuplot - ' '"${gnuplot}/bin/gnuplot - ' + ''; + + passthru = { + updateScript = nix-update-script { + attrPath = pname; + }; + }; meta = with stdenv.lib; { - description = "Do maths like a normal person"; + description = "Do maths like a normal person, designed for elementary OS"; longDescription = '' It’s an app where you do maths like a normal person. It lets you type whatever you want and smartly figures out what is math and @@ -63,7 +80,7 @@ stdenv.mkDerivation rec { the equations it’s used in. ''; homepage = "https://github.com/parnold-x/nasc"; - maintainers = with maintainers; [ samdroid-apps ]; + maintainers = pantheon.maintainers; platforms = platforms.linux; license = licenses.gpl3Plus; }; diff --git a/pkgs/applications/science/math/nauty/default.nix b/pkgs/applications/science/math/nauty/default.nix index c1d408213b9..d75fc9731cd 100644 --- a/pkgs/applications/science/math/nauty/default.nix +++ b/pkgs/applications/science/math/nauty/default.nix @@ -10,15 +10,13 @@ stdenv.mkDerivation rec { sha256 = "1nym0p2djws8ylkpr0kgpxfa6fxdlh46cmvz0gn5vd02jzgs0aww"; }; outputs = [ "out" "dev" ]; - configureFlags = { + configureFlags = [ # Prevent nauty from sniffing some cpu features. While those are very # widely available, it can lead to nasty bugs when they are not available: # https://groups.google.com/forum/#!topic/sage-packaging/Pe4SRDNYlhA - default = [ "--disable-clz" "--disable-popcnt" ]; - westmere = [ "--disable-clz" ]; - sandybridge = [ "--disable-clz" ]; - ivybridge = [ "--disable-clz" ]; - }.${stdenv.hostPlatform.platform.gcc.arch or "default"} or []; + "--${if stdenv.hostPlatform.sse4_2Support then "enable" else "disable"}-popcnt" + "--${if stdenv.hostPlatform.sse4_aSupport then "enable" else "disable"}-clz" + ]; installPhase = '' mkdir -p "$out"/{bin,share/doc/nauty} "$dev"/{lib,include/nauty} diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index d1ab05d4cde..df622e7303d 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -12,7 +12,11 @@ stdenv.mkDerivation rec { }; patchPhase = '' + # The gnome-search-provider2.c file generated by gdbus-codegen depends + # on gio-unix-2.0, which is a Requires.private of gtk+-3.0, + # and private dependencies are dropped in our default patched pkg-config. # https://github.com/Qalculate/qalculate-gtk/pull/178 + # https://github.com/NixOS/nixpkgs/issues/292 substituteInPlace configure.ac --replace 'libxml-2.0' 'libxml-2.0 gio-unix-2.0' # https://github.com/Qalculate/qalculate-gtk/pull/179 diff --git a/pkgs/applications/science/math/rofi-calc/default.nix b/pkgs/applications/science/math/rofi-calc/default.nix index 84adb2358d2..40b2711ff65 100644 --- a/pkgs/applications/science/math/rofi-calc/default.nix +++ b/pkgs/applications/science/math/rofi-calc/default.nix @@ -12,13 +12,13 @@ stdenv.mkDerivation rec { pname = "rofi-calc"; - version = "1.7"; + version = "1.8"; src = fetchFromGitHub { owner = "svenstaro"; repo = pname; rev = "v${version}"; - sha256 = "046x2zpvza7n0m81s75qkvmnpkvsvvyqqqjxcqzj7by0llpqs7wa"; + sha256 = "0vwb9c3xvd2cms6cw8j8parg7w4bsxvvrd1wgggr8sz2p8rrvy5p"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/science/math/wxmaxima/default.nix b/pkgs/applications/science/math/wxmaxima/default.nix index a6afc95ac09..7a81a0d679a 100644 --- a/pkgs/applications/science/math/wxmaxima/default.nix +++ b/pkgs/applications/science/math/wxmaxima/default.nix @@ -4,13 +4,13 @@ stdenv.mkDerivation rec { pname = "wxmaxima"; - version = "20.04.0"; + version = "20.06.6"; src = fetchFromGitHub { owner = "wxMaxima-developers"; repo = "wxmaxima"; rev = "Version-${version}"; - sha256 = "0vrjxzfgmjdzm1rgl0crz4b4badl14jwh032y3xkcdvjl5j67lp3"; + sha256 = "054f7n5kx75ng5j20rd5q27n9xxk03mrd7sbxyym1lsswzimqh4w"; }; buildInputs = [ wxGTK maxima gnome3.adwaita-icon-theme ]; |