5 files changed, 21 insertions, 13 deletions
diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix
index d08078c356e..4bd237f8783 100644
--- a/pkgs/applications/science/math/R/default.nix
+++ b/pkgs/applications/science/math/R/default.nix
@@ -94,6 +94,11 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  # disable stackprotector on aarch64-darwin for now
+  # https://github.com/NixOS/nixpkgs/issues/158730
+  # see https://github.com/NixOS/nixpkgs/issues/127608 for a similar issue
+  hardeningDisable = lib.optionals (stdenv.isAarch64 && stdenv.isDarwin) [ "stackprotector" ];
+
   setupHook = ./setup-hook.sh;
 
   meta = with lib; {
diff --git a/pkgs/applications/science/math/bcal/default.nix b/pkgs/applications/science/math/bcal/default.nix
index 85bcd1b2d2f..b23b433becd 100644
--- a/pkgs/applications/science/math/bcal/default.nix
+++ b/pkgs/applications/science/math/bcal/default.nix
@@ -8,13 +8,13 @@
 
 stdenv.mkDerivation rec {
   pname = "bcal";
-  version = "2.3";
+  version = "2.4";
 
   src = fetchFromGitHub {
     owner = "jarun";
     repo = "bcal";
     rev = "v${version}";
-    sha256 = "sha256-1k8Q+I1Mc196QL+x4yXzRi7WLBf30U4sJyl0rXisW7k=";
+    sha256 = "sha256-PleWU2yyJzkUAZEvEYoCGdpEXqOgRvZK9zXTYrxRtQU=";
   };
 
   buildInputs = [ readline ];
diff --git a/pkgs/applications/science/math/ginac/default.nix b/pkgs/applications/science/math/ginac/default.nix
index 78b64d7f587..1fff1156c1a 100644
--- a/pkgs/applications/science/math/ginac/default.nix
+++ b/pkgs/applications/science/math/ginac/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   pname = "ginac";
-  version = "1.8.1";
+  version = "1.8.2";
 
   src = fetchurl {
     url = "https://www.ginac.de/ginac-${version}.tar.bz2";
-    sha256 = "sha256-8WldvWsYcGHvP7pQdkjJ1tukOPczsFjBb5J4y9z14as=";
+    sha256 = "sha256-v811Gryviv3bg5WMKtInY6deokAyVT5QPumzjj6jtsM=";
   };
 
   propagatedBuildInputs = [ cln ];
diff --git a/pkgs/applications/science/math/gmsh/default.nix b/pkgs/applications/science/math/gmsh/default.nix
index fe34a82679a..76fc20c4b04 100644
--- a/pkgs/applications/science/math/gmsh/default.nix
+++ b/pkgs/applications/science/math/gmsh/default.nix
@@ -5,25 +5,28 @@ assert (!blas.isILP64) && (!lapack.isILP64);
 
 stdenv.mkDerivation rec {
   pname = "gmsh";
-  version = "4.9.2";
+  version = "4.9.4";
 
   src = fetchurl {
     url = "https://gmsh.info/src/gmsh-${version}-source.tgz";
-    sha256 = "sha256-26KB4DNYT12gfi2Y1656PcSBcjyybCxye2X8ILMBYYw=";
+    sha256 = "sha256-rP8zQtGQfEKaS+PkWW7UT2zUP9WpSrdWZ/SGPNzy92k=";
   };
 
-  buildInputs = [ blas lapack gmm fltk libjpeg zlib libGLU libGL
-    libGLU xorg.libXrender xorg.libXcursor xorg.libXfixes xorg.libXext
-    xorg.libXft xorg.libXinerama xorg.libX11 xorg.libSM xorg.libICE
-    opencascade-occt
+  buildInputs = [
+    blas lapack gmm fltk libjpeg zlib opencascade-occt
+  ] ++ lib.optionals (!stdenv.isDarwin) [
+    libGL libGLU xorg.libXrender xorg.libXcursor xorg.libXfixes
+    xorg.libXext xorg.libXft xorg.libXinerama xorg.libX11 xorg.libSM
+    xorg.libICE
   ];
 
   nativeBuildInputs = [ cmake gfortran ];
 
+  doCheck = true;
+
   meta = {
     description = "A three-dimensional finite element mesh generator";
     homepage = "https://gmsh.info/";
-    platforms = [ "x86_64-linux" ];
     license = lib.licenses.gpl2Plus;
   };
 }
diff --git a/pkgs/applications/science/math/gretl/default.nix b/pkgs/applications/science/math/gretl/default.nix
index 175add544b5..b8b600c1874 100644
--- a/pkgs/applications/science/math/gretl/default.nix
+++ b/pkgs/applications/science/math/gretl/default.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   pname = "gretl";
-  version = "2021d";
+  version = "2022a";
 
   src = fetchurl {
     url = "mirror://sourceforge/gretl/${pname}-${version}.tar.xz";
-    sha256 = "sha256-zij337P/MemCwvMah2bUE3odv0Kf/KW6fUl2OgMzjuI=";
+    sha256 = "sha256-J+JcuCda2xYJ5aVz6UXR+nWiid6QxpDtt4DXlb6L4UA=";
   };
 
   buildInputs = [