diff options
Diffstat (limited to 'pkgs/applications/science/math/sage/sage-src.nix')
| -rw-r--r-- | pkgs/applications/science/math/sage/sage-src.nix | 102 |
1 files changed, 70 insertions, 32 deletions
diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index 99a163eb0b8..3e4ed900a92 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -9,6 +9,20 @@ # This is done because multiple derivations rely on these sources and they should # all get the same sources with the same patches applied. +let + # Fetch a diff between `base` and `rev` on sage's git server. + # Used to fetch trac tickets by setting the `base` to the last release and the + # `rev` to the last commit of the ticket. + fetchSageDiff = { base, name, rev, sha256, ...}@args: ( + fetchpatch ({ + inherit name sha256; + url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}"; + # We don't care about sage's own build system (which builds all its dependencies). + # Exclude build system changes to avoid conflicts. + excludes = [ "build/*" ]; + } // builtins.removeAttrs args [ "rev" "base" "sha256" ]) + ); +in stdenv.mkDerivation rec { version = "9.2"; pname = "sage-src"; @@ -40,17 +54,13 @@ stdenv.mkDerivation rec { # https://groups.google.com/forum/#!topic/sage-packaging/YGOm8tkADrE ./patches/sphinx-docbuild-subprocesses.patch - # Sage's workaround to pretty print dicts (in - # src/sage/doctest/forker.py:init_sage) runs too late (after - # controller.load_environment(), which imports sage.all.*) to to - # affect sage.sandpiles.Sandpile{Config,Divisor}'s pretty printer. - # Due to the sandpiles module being lazily loaded, this only - # affects the first run (subsequent runs read from an import cache - # at ~/.sage/cache and are not affected), which is probably why - # other distributions don't hit this bug. This breaks two sandpile - # tests, so do the workaround a little bit earlier. - # https://trac.sagemath.org/ticket/31053 - ./patches/register-pretty-printer-earlier.patch + # Register sorted dict pprinter earlier (https://trac.sagemath.org/ticket/31053) + (fetchSageDiff { + base = "9.3.beta4"; + name = "register-pretty-printer-earlier.patch"; + rev = "d658230ce06ca19f4a3b3a4576297ee82f2d2151"; + sha256 = "sha256-9mPUV7K5PoLDH2vVaYaOfvDLDpmxU0Aj7m/eaXYotDs="; + }) ]; # Since sage unfortunately does not release bugfix releases, packagers must @@ -63,17 +73,20 @@ stdenv.mkDerivation rec { # fix intermittent errors in Sage 9.2's psage.py (this patch is # already included in Sage 9.3): https://trac.sagemath.org/ticket/30730 - (fetchpatch { + (fetchSageDiff { + base = "9.2.rc2"; name = "fix-psage-is-locked.patch"; - url = "https://git.sagemath.org/sage.git/patch/?id=75df605f216ddc7b6ca719be942d666b241520e9"; + rev = "75df605f216ddc7b6ca719be942d666b241520e9"; sha256 = "0g9pl1wbb3sgs26d3bvv70cpa77sfskylv4kd255y1794f1fgk4q"; }) # fix intermittent errors in sagespawn.pyx: https://trac.sagemath.org/ticket/31052 - ./patches/sagespawn-implicit-casting.patch - - # disable pexpect interrupt test (see https://trac.sagemath.org/ticket/30945) - ./patches/disable-pexpect-intermittent-failure.patch + (fetchSageDiff { + base = "9.2"; + name = "sagespawn-implicit-casting.patch"; + rev = "2959ac792ebd6107fe87c9af1541083de5ba02d6"; + sha256 = "sha256-bWIpEGir9Kawak5CJegBMNcHm/CqhWmdru+emeSsvO0="; + }) ]; # Patches needed because of package updates. We could just pin the versions of @@ -82,20 +95,7 @@ stdenv.mkDerivation rec { # compatible with never dependency versions when possible. All these changes # should come from or be proposed to upstream. This list will probably never # be empty since dependencies update all the time. - packageUpgradePatches = let - # Fetch a diff between `base` and `rev` on sage's git server. - # Used to fetch trac tickets by setting the `base` to the last release and the - # `rev` to the last commit of the ticket. - fetchSageDiff = { base, rev, name ? "sage-diff-${base}-${rev}.patch", ...}@args: ( - fetchpatch ({ - inherit name; - url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}"; - # We don't care about sage's own build system (which builds all its dependencies). - # Exclude build system changes to avoid conflicts. - excludes = [ "build/*" ]; - } // builtins.removeAttrs args [ "rev" "base" ]) - ); - in [ + packageUpgradePatches = [ # After updating smypow to (https://trac.sagemath.org/ticket/3360) we can # now set the cache dir to be withing the .sage directory. This is not # strictly necessary, but keeps us from littering in the user's HOME. @@ -105,7 +105,20 @@ stdenv.mkDerivation rec { ./patches/ignore-cmp-deprecation.patch # adapt sage's Image class to pillow 8.0.1 (https://trac.sagemath.org/ticket/30971) - ./patches/pillow-update.patch + (fetchSageDiff { + base = "9.3.beta2"; + name = "pillow-8.0.1-update.patch"; + rev = "f05f2d0aac9c4b5abe68105cee2cc7f2c8461847"; + sha256 = "sha256-uY2UlgSd5hhOUUukB4Xc3Gjy0/e7p/qyq9jdvz10IOs="; + }) + + # don't use deprecated numpy type aliases (https://trac.sagemath.org/ticket/31364) + (fetchSageDiff { + base = "9.3.beta7"; + name = "dont-use-deprecated-numpy-type-aliases.patch"; + rev = "dfdef60515d4a4269e82d91280f76a7fdf10bf97"; + sha256 = "sha256-77/3LkT5J7DQN8IPlGJKB6ZcJPaF7xwje06JNns+0AE="; + }) # fix test output with sympy 1.7 (https://trac.sagemath.org/ticket/30985) ./patches/sympy-1.7-update.patch @@ -115,6 +128,31 @@ stdenv.mkDerivation rec { # updated eclib output has punctuation changes and tidier whitespace ./patches/eclib-20210223-test-formatting.patch + + # upgrade arb to 2.18.1 (https://trac.sagemath.org/ticket/28623) + (fetchSageDiff { + base = "9.3.beta3"; + name = "arb-2.18.1-update.patch"; + rev = "0c9c4ed35c2eaf34ae0d19387c07b7f460e4abce"; + sha256 = "sha256-CjOJIsyyVCziAfvE6pWSihPO35IZMcY2/taXAsqhPLY="; + }) + + # giac 1.6.0-47 update (https://trac.sagemath.org/ticket/30537) + (fetchSageDiff { + base = "9.3.beta7"; + name = "giac-1.6.0-47-update.patch"; + rev = "f05720bf63dfaf33a4e3b6d3ed2c2c0ec46b5d31"; + sha256 = "sha256-gDUq+84eXd5GxLBWUSI61GMJpBF2KX4LBVOt3mS1NF8="; + }) + + # Make gcd/lcm interact better with pari and gmpy2 (https://trac.sagemath.org/ticket/30849) + # needed for pari 2.13.1 update, which we will do in the future + (fetchSageDiff { + base = "9.3.beta0"; + name = "make-gcd-lcm-interact-better-with-pari-and-gmpy2.patch"; + rev = "75c1516f0abb9e6f8c335e38e4031f6ef674ed30"; + sha256 = "sha256-RukkieIZcXNrju904H2oyGKdtpdE+9vNzvyjN2IBNg0="; + }) ]; patches = nixPatches ++ bugfixPatches ++ packageUpgradePatches; |