diff options
Diffstat (limited to 'pkgs/applications/science/math/sage/default.nix')
| -rw-r--r-- | pkgs/applications/science/math/sage/default.nix | 173 |
1 files changed, 157 insertions, 16 deletions
diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix index bf3c7fcea98..24dc4436b0f 100644 --- a/pkgs/applications/science/math/sage/default.nix +++ b/pkgs/applications/science/math/sage/default.nix @@ -1,42 +1,183 @@ -{ stdenv, fetchurl, m4, perl, gfortran, texlive, ffmpeg, tk, gnused_422 -, imagemagick, liblapack, python, openssl, libpng +# TODO +# - consider writing a script to convert spkgs to nix packages, similar to vim +# or cabal2nix. This would allow a more efficient and "cleaner" build, greater +# flexibility and the possibility to select which dependencies to add and which +# to remove. It would also allow to use system packages for some dependencies +# and recompile others (optimized for the system) without recompiling everything. +# - add optdeps: +# - imagemagick +# - texlive full for documentation +# - ... +# - further seperate build outputs. Also maybe run `make doc`. +# Configure flags like --bindir and --libdir oculd also be used for that, see +# ./configure --help`. + +# Other resources: +# - https://wiki.debian.org/DebianScience/Sage +# - https://github.com/cschwan/sage-on-gentoo +# - https://git.archlinux.org/svntogit/community.git/tree/trunk?h=packages/sagemath + +{ stdenv +, fetchurl +, perl +, gfortran +, python +, autoreconfHook +, gettext , which +, texlive +, hevea }: stdenv.mkDerivation rec { - name = "sage-6.8"; + version = "8.0"; + name = "sage-${version}"; src = fetchurl { - url = "http://old.files.sagemath.org/src-old/${name}.tar.gz"; - sha256 = "102mrzzi215g1xn5zgcv501x9sghwg758jagx2jixvg1rj2jijj9"; - + # Note that the source is *not* fetched from github, since that doesn't + # the upstream folder with all the source tarballs of the spkgs. + # If those are not present they are fetched at build time, which breaks + # when building in a sandbox (and probably only works if you install the + # latest sage version). + urls = [ + "http://mirrors.mit.edu/sage/src/sage-${version}.tar.gz" + "ftp://ftp.fu-berlin.de/unix/misc/sage/src/sage-${version}.tar.gz" + "http://sagemath.polytechnic.edu.na/src/sage-${version}.tar.gz" + "ftp://ftp.sun.ac.za/pub/mirrors/www.sagemath.org/src/sage-${version}.tar.gz" + "http://sagemath.mirror.ac.za/src/sage-${version}.tar.gz" + "http://ftp.leg.uct.ac.za/pub/packages/sage/src/sage-${version}.tar.gz" + "http://mirror.ufs.ac.za/sagemath/src/sage-${version}.tar.gz" + "http://mirrors-usa.go-parts.com/sage/sagemath/src/sage-${version}.tar.gz" + "http://www.cecm.sfu.ca/sage/src/sage-${version}.tar.gz" + "http://files.sagemath.org/src/sage-${version}.tar.gz" + "http://mirrors.xmission.com/sage/src/sage-${version}.tar.gz" + "http://sagemath.c3sl.ufpr.br/src/sage-${version}.tar.gz" + "http://linorg.usp.br/sage/src/sage-${version}.tar.gz" + "http://mirror.hust.edu.cn/sagemath/src/sage-${version}.tar.gz" + "http://ftp.iitm.ac.in/sage/src/sage-${version}.tar.gz" + "http://ftp.kaist.ac.kr/sage/src/sage-${version}.tar.gz" + "http://ftp.riken.jp/sagemath/src/sage-${version}.tar.gz" + "http://mirrors.tuna.tsinghua.edu.cn/sagemath/src/sage-${version}.tar.gz" + "http://mirrors.ustc.edu.cn/sagemath/src/sage-${version}.tar.gz" + "http://ftp.tsukuba.wide.ad.jp/software/sage/src/sage-${version}.tar.gz" + "http://ftp.yz.yamagata-u.ac.jp/pub/math/sage/src/sage-${version}.tar.gz" + "http://mirror.yandex.ru/mirrors/sage.math.washington.edu/src/sage-${version}.tar.gz" + "http://mirror.aarnet.edu.au/pub/sage/src/sage-${version}.tar.gz" + "http://sage.mirror.garr.it/mirrors/sage/src/sage-${version}.tar.gz" + "http://www.mirrorservice.org/sites/www.sagemath.org/src/sage-${version}.tar.gz" + "http://mirror.switch.ch/mirror/sagemath/src/sage-${version}.tar.gz" + "https://mirrors.up.pt/pub/sage/src/sage-${version}.tar.gz" + "http://www-ftp.lip6.fr/pub/math/sagemath/src/sage-${version}.tar.gz" + "http://ftp.ntua.gr/pub/sagemath/src/sage-${version}.tar.gz" + ]; + sha256 = "1a9rhb8jby6fdqa2s7n2fl9jwqqlsl7qz7dbpbwvg6jwlrvni7fg"; }; - buildInputs = [ m4 perl gfortran texlive.combined.scheme-basic ffmpeg gnused_422 tk imagemagick liblapack - python openssl libpng which ]; + postPatch = '' + substituteAllInPlace src/bin/sage-env + ''; - patches = [ ./spkg-singular.patch ./spkg-python.patch ./spkg-git.patch ]; + installPhase = '' + # Sage installs during first `make`, `make install` is no-op and just takes time. + ''; + + outputs = [ "out" "doc" ]; + + buildInputs = [ + perl # needed for the build + python # needed for the build + gfortran # needed to build giac + autoreconfHook # needed to configure sage with prefix + gettext # needed to build the singular spkg + hevea # needed to build the docs of the giac spkg + which # needed in configure of mpir + # needed to build the docs of the giac spkg + (texlive.combine { inherit (texlive) + scheme-basic + collection-pstricks # needed by giac + times # font needed by giac + stmaryrd # needed by giac + babel-greek # optional for giac, otherwise throws a bunch of latex command not founds + ; + }) + ]; + + patches = [ + # fix usages of /bin/rm + ./spkg-singular.patch + # help python find the crypt library + ./spkg-python2.patch + ./spkg-python3.patch + # fix usages of /usr/bin/perl + ./spkg-git.patch + # fix usages of /bin/cp and add necessary argument to function call + ./spkg-giac.patch + # environment + ./env.patch + ]; enableParallelBuilding = true; - hardeningDisable = [ "format" ]; + hardeningDisable = [ + "format" # needed to build palp, for lines like `printf(ctime(&_NFL->TIME))` + # TODO could be patched with `sed s|printf(ctime(\(.*\)))|%s... or fixed upstream + ]; preConfigure = '' export SAGE_NUM_THREADS=$NIX_BUILD_CORES export SAGE_ATLAS_ARCH=fast - mkdir -p $out/sageHome - export HOME=$out/sageHome - export CPPFLAGS="-P" + + export HOME=$out/sage-home + mkdir -p $out/sage-home + + mkdir -p "$out" + + # we need to keep the source around + dir="$PWD" + cd .. + mv "$dir" "$out/sage-root" + + cd "$out/sage-root" # build in target dir, since `make` is also `make install` + ''; + + # for reference: http://doc.sagemath.org/html/en/installation/source.html + preBuild = '' + # TODO do this conditionally + export SAGE_SPKG_INSTALL_DOCS='no' + patchShebangs build + ''; + + postBuild = '' + rm -r "$out/sage-root/upstream" # don't keep the sources of all the spkgs + rm -r "$out/sage-root/src/build" + rm -rf "$out/sage-root/src/.git" + rm -r "$out/sage-root/logs" + # Fix dependency cycle between out and doc + rm -f "$out/sage-root/config.status" + rm -f "$out/sage-root/build/make/Makefile-auto" + rm -f "$out/sage-home/.sage/gap/libgap-workspace-"* ''; - preBuild = "patchShebangs build"; + # TODO there are some doctest failures, which seem harmless. + # We should figure out a way to fix the failures or ignore only those tests. + doCheck = false; - installPhase = ''DESTDIR=$out make install''; + checkTarget = "ptestalllong"; # all long tests in parallell + preCheck = '' + export SAGE_TIMEOUT=0 # no timeout + export SAGE_TIMEOUT_LONG=0 # no timeout + ''; meta = { homepage = http://www.sagemath.org; description = "A free open source mathematics software system"; + # taken from the homepage + longDescription = '' + SageMath is a free open-source mathematics software system licensed under the GPL. It builds on top of many existing open-source packages: NumPy, SciPy, matplotlib, Sympy, Maxima, GAP, FLINT, R and many more. Access their combined power through a common, Python-based language or directly via interfaces or wrappers. + Mission: Creating a viable free open source alternative to Magma, Maple, Mathematica and Matlab. + ''; license = stdenv.lib.licenses.gpl2Plus; - broken = true; + platforms = stdenv.lib.platforms.linux; + maintainers = with stdenv.lib.maintainers; [ timokau ]; }; } |