diff options
Diffstat (limited to 'pkgs/applications/science/biology')
5 files changed, 12 insertions, 12 deletions
diff --git a/pkgs/applications/science/biology/deeptools/default.nix b/pkgs/applications/science/biology/deeptools/default.nix index 78a6f483337..8787c96e5b0 100644 --- a/pkgs/applications/science/biology/deeptools/default.nix +++ b/pkgs/applications/science/biology/deeptools/default.nix @@ -4,11 +4,11 @@ with python.pkgs; buildPythonApplication rec { pname = "deepTools"; - version = "3.3.1"; + version = "3.4.1"; src = fetchPypi { inherit pname version; - sha256 = "08p36p9ncj5s8qf1r7h83x4rnmi63l3yk6mnr3wgpg2qgvwl0hji"; + sha256 = "05zw9gk17hz08hns5lnhn7l13idg9jdz4gdba6m6gbr84yz149gs"; }; propagatedBuildInputs = [ diff --git a/pkgs/applications/science/biology/last/default.nix b/pkgs/applications/science/biology/last/default.nix index b47ce6ac3a9..1a3762f4326 100644 --- a/pkgs/applications/science/biology/last/default.nix +++ b/pkgs/applications/science/biology/last/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "last"; - version = "1047"; + version = "1060"; src = fetchurl { url = "http://last.cbrc.jp/last-${version}.zip"; - sha256 = "06fj4qfw3dd35y3pky3dnr40v1alf43wjx373rbx1vr3hbgzvgf8"; + sha256 = "0h0604rxg0z0h21dykrnxsb4679zfhibg79gss1v2ik5xpdxl8kk"; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/science/biology/picard-tools/default.nix b/pkgs/applications/science/biology/picard-tools/default.nix index 93f66810549..246c9876810 100644 --- a/pkgs/applications/science/biology/picard-tools/default.nix +++ b/pkgs/applications/science/biology/picard-tools/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "picard-tools"; - version = "2.22.0"; + version = "2.22.2"; src = fetchurl { url = "https://github.com/broadinstitute/picard/releases/download/${version}/picard.jar"; - sha256 = "1qgg8r81xn2z965v78kfj05vycrd2cz48gxk5csr6kvwk3ba286c"; + sha256 = "11mzz483f89pb2s8jmwhl12d0m6k41kmi4xh0i6hq69rxrqi8l4s"; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/applications/science/biology/seaview/default.nix b/pkgs/applications/science/biology/seaview/default.nix index fea8da41d70..4192de714d0 100644 --- a/pkgs/applications/science/biology/seaview/default.nix +++ b/pkgs/applications/science/biology/seaview/default.nix @@ -1,12 +1,12 @@ { stdenv, fetchurl, coreutils, fltk, libjpeg }: stdenv.mkDerivation rec { - version = "5.0"; + version = "5.0.2"; pname = "seaview"; src = fetchurl { url = "ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_${version}.tar.gz"; - sha256 = "0gzjqf5mm91pa1drwxvz229bv6l995npdggngszh6z6j4pfh8j7c"; + sha256 = "0bad0nd18a36g6ysx28j68rbnwqn33ra8inx2lv2igqqcs6i5kif"; }; buildInputs = [ fltk libjpeg ]; @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { Gouy M., Guindon S. & Gascuel O. (2010) SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution 27(2):221-224. ''; - homepage = http://doua.prabi.fr/software/seaview; + homepage = "http://doua.prabi.fr/software/seaview"; license = licenses.gpl3; maintainers = [ maintainers.iimog ]; platforms = platforms.linux; diff --git a/pkgs/applications/science/biology/stacks/default.nix b/pkgs/applications/science/biology/stacks/default.nix index e778c3bd52c..93a02a46bd8 100644 --- a/pkgs/applications/science/biology/stacks/default.nix +++ b/pkgs/applications/science/biology/stacks/default.nix @@ -2,17 +2,17 @@ stdenv.mkDerivation rec { pname = "stacks"; - version = "2.41"; + version = "2.52"; src = fetchurl { url = "http://catchenlab.life.illinois.edu/stacks/source/${pname}-${version}.tar.gz"; - sha256 = "0q420rzjb05jfchcls3pysm4hxfgs6xj2jw246isx0il10g93gkq"; + sha256 = "0gq3kbj910jsq591wylzjmd23srjlsssmrckmf46m4ysjqdqd8vm"; }; buildInputs = [ zlib ]; meta = { description = "Software pipeline for building loci from short-read sequences"; - homepage = http://catchenlab.life.illinois.edu/stacks/; + homepage = "http://catchenlab.life.illinois.edu/stacks/"; maintainers = [ stdenv.lib.maintainers.bzizou ]; license = stdenv.lib.licenses.gpl3; }; |