summary refs log tree commit diff
path: root/pkgs/applications/science/biology/last/default.nix
diff options
context:
space:
mode:
Diffstat (limited to 'pkgs/applications/science/biology/last/default.nix')
-rw-r--r--pkgs/applications/science/biology/last/default.nix30
1 files changed, 30 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/last/default.nix b/pkgs/applications/science/biology/last/default.nix
new file mode 100644
index 00000000000..5ece9a463d4
--- /dev/null
+++ b/pkgs/applications/science/biology/last/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchurl, unzip, zlib, python3, parallel }:
+
+stdenv.mkDerivation rec {
+  pname = "last";
+  version = "1042";
+
+  src = fetchurl {
+    url = "http://last.cbrc.jp/last-${version}.zip";
+    sha256 = "0mgbhd01m9riqza2gx56qk6x5682kg71zflhisr6d3q05wrv103f";
+  };
+
+  nativeBuildInputs = [ unzip ];
+  buildInputs = [ zlib python3 ];
+
+  makeFlags = [ "prefix=${placeholder "out"}" ];
+
+  postFixup = ''
+    for f in $out/bin/parallel-* ; do
+      sed -i 's|parallel |${parallel}/bin/parallel |' $f
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Genomic sequence aligner";
+    homepage = "http://last.cbrc.jp/";
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ jbedo ];
+    platforms = platforms.x86_64;
+  };
+}